Citrus Sinensis ID: 034848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MVLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQGH
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mvlpfdlqdfIVRGRVLKLYRKALRtanrapphardELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQGH
Flexible Loop (DISEMBL)
mvlpfdlqdfivrgRVLKLYRKalrtanrapphardelkQTIRQemdkhrdckdrqkirYLISeglerlkgldemldmqgh
Low Complexity Region (SEG)
MVLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQGH
Disordered region (IsUnstruct)
***PFDLQDFIVRGRVLKLYRKALR********************************IRYLIS******************
Disordered Region (DISOPRED)
**LPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLD*MLD****
Disordered Region (DISEMBL)
MVLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQGH
Disordered Region (DISPRO)
*VLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDM***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLPFDLQDFIVRGRVLKLYRKALRTANRAPPHAxxxxxxxxxxxxxxxxxxxxxQKIRYLISEGLERLKGLDEMLDMQGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
145327713	80	LYR family of Fe/S cluster biogenesis pr	0.987	1.0	0.75	4e-28
297842347	80	hypothetical protein ARALYDRAFT_316527 [	0.987	1.0	0.737	3e-27
255580153	81	conserved hypothetical protein [Ricinus	0.987	0.987	0.75	6e-27
224129442	85	predicted protein [Populus trichocarpa]	1.0	0.952	0.753	8e-27
357438571	77	hypothetical protein MTR_1g026100 [Medic	0.938	0.987	0.710	1e-24
356564402	78	PREDICTED: uncharacterized protein LOC10	0.950	0.987	0.675	1e-23
449437174	81	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.666	2e-23
225459756	81	PREDICTED: uncharacterized protein LOC10	0.851	0.851	0.753	3e-23
302141713	140	unnamed protein product [Vitis vinifera]	0.851	0.492	0.753	3e-23
115447797	82	Os02g0667000 [Oryza sativa Japonica Grou	0.938	0.926	0.697	4e-23

>gi|145327713|ref|NP_001077832.1| LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana] gi|8778812|gb|AAF79817.1|AC007396_17 T4O12.27 [Arabidopsis thaliana] gi|62321766|dbj|BAD95391.1| hypothetical protein [Arabidopsis thaliana] gi|98961727|gb|ABF59193.1| unknown protein [Arabidopsis thaliana] gi|332197671|gb|AEE35792.1| LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/80 (75%), Positives = 71/80 (88%)

Query: 2  VLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYL 61
          ++  DLQ FI+R RVLKLYR+AL+ A+RAP H R ELKQT+RQEM+K+RDC D+QKIRYL
Sbjct: 1  MVQLDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYL 60

Query: 62 ISEGLERLKGLDEMLDMQGH 81
          ISEGLER+KGLDEMLDMQGH
Sbjct: 61 ISEGLERIKGLDEMLDMQGH 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842347|ref|XP_002889055.1| hypothetical protein ARALYDRAFT_316527 [Arabidopsis lyrata subsp. lyrata] gi|297334896|gb|EFH65314.1| hypothetical protein ARALYDRAFT_316527 [Arabidopsis lyrata subsp. lyrata]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/80 (73%), Positives = 69/80 (86%)

Query: 2  VLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYL 61
          ++  DLQ FI+R RVLKLYR+AL+ A RAP H R ELKQT+R EM+K+RDC D+QKIRYL
Sbjct: 1  MVQLDLQSFILRARVLKLYRQALKVAQRAPVHVRGELKQTVRHEMEKNRDCDDKQKIRYL 60

Query: 62 ISEGLERLKGLDEMLDMQGH 81
          ISEGLER+KGLDEMLDMQGH
Sbjct: 61 ISEGLERIKGLDEMLDMQGH 80

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580153|ref|XP_002530908.1| conserved hypothetical protein [Ricinus communis] gi|223529530|gb|EEF31484.1| conserved hypothetical protein [Ricinus communis]

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/80 (75%), Positives = 69/80 (86%)

Query: 1  MVLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRY 60
          MVL F+LQDFI+R  V KLYR+ALR A RAP HAR ELKQTIRQEM+ +R+CKD+Q+IR+
Sbjct: 1  MVLSFNLQDFILRACVFKLYRQALRIAQRAPSHARVELKQTIRQEMENNRNCKDKQRIRF 60

Query: 61 LISEGLERLKGLDEMLDMQG 80
          LISEG ERLK LDEMLDMQG
Sbjct: 61 LISEGRERLKHLDEMLDMQG 80

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129442|ref|XP_002320587.1| predicted protein [Populus trichocarpa] gi|118482473|gb|ABK93159.1| unknown [Populus trichocarpa] gi|222861360|gb|EEE98902.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 69/81 (85%)

Query: 1  MVLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRY 60
          MVL F LQDFI+R RVLKLYR+ALRT  RAP  AR +LKQTIRQEM+ +R C D+Q+IR+
Sbjct: 1  MVLSFGLQDFILRARVLKLYRQALRTTRRAPGDARADLKQTIRQEMENNRHCNDKQRIRF 60

Query: 61 LISEGLERLKGLDEMLDMQGH 81
          LISEGLERLK LDEMLDMQGH
Sbjct: 61 LISEGLERLKRLDEMLDMQGH 81

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438571|ref|XP_003589561.1| hypothetical protein MTR_1g026100 [Medicago truncatula] gi|355478609|gb|AES59812.1| hypothetical protein MTR_1g026100 [Medicago truncatula]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 67/76 (88%)

Query: 6  DLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
          DLQDF++R R+ KLYR+ALR A RAPP AR EL+QTIRQE++ +R+C D+Q+IR+LISEG
Sbjct: 2  DLQDFLIRARIFKLYRQALRVAARAPPPARGELRQTIRQEIEINRNCNDKQRIRFLISEG 61

Query: 66 LERLKGLDEMLDMQGH 81
          LE+LK LDEMLDMQGH
Sbjct: 62 LEKLKRLDEMLDMQGH 77

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564402|ref|XP_003550443.1| PREDICTED: uncharacterized protein LOC100782536 [Glycine max]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 67/77 (87%)

Query: 5  FDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISE 64
           DLQDF++R RVL+LYR+ALR A RAP  A+ EL+QTIRQEM+ +R+C D+Q+IR+LISE
Sbjct: 1  MDLQDFLIRARVLRLYRQALRIAGRAPSSAKAELRQTIRQEMENNRNCNDKQRIRFLISE 60

Query: 65 GLERLKGLDEMLDMQGH 81
          GL++LK LDEMLDMQG+
Sbjct: 61 GLDKLKRLDEMLDMQGY 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437174|ref|XP_004136367.1| PREDICTED: uncharacterized protein LOC101211729 [Cucumis sativus] gi|449519958|ref|XP_004167001.1| PREDICTED: uncharacterized protein LOC101225559 [Cucumis sativus]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 67/81 (82%)

Query: 1  MVLPFDLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRY 60
          MV   DL++FI+R RVLKLYR+ LRTA +AP   RDEL+  +R+EM+K+R C DRQKIR+
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LISEGLERLKGLDEMLDMQGH 81
          L+SEG+ERLK LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459756|ref|XP_002285901.1| PREDICTED: uncharacterized protein LOC100242024 [Vitis vinifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 61/69 (88%)

Query: 13 RGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
          R RVLKLYR+ALR A RAP HAR EL+QT+RQEM+ +R+C D+Q+IR+LISEGL RLKGL
Sbjct: 13 RARVLKLYRQALRVAGRAPEHARAELRQTVRQEMENNRNCNDKQRIRFLISEGLARLKGL 72

Query: 73 DEMLDMQGH 81
          DEMLDMQGH
Sbjct: 73 DEMLDMQGH 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141713|emb|CBI18916.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 61/69 (88%)

Query: 13  RGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
           R RVLKLYR+ALR A RAP HAR EL+QT+RQEM+ +R+C D+Q+IR+LISEGL RLKGL
Sbjct: 72  RARVLKLYRQALRVAGRAPEHARAELRQTVRQEMENNRNCNDKQRIRFLISEGLARLKGL 131

Query: 73  DEMLDMQGH 81
           DEMLDMQGH
Sbjct: 132 DEMLDMQGH 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115447797|ref|NP_001047678.1| Os02g0667000 [Oryza sativa Japonica Group] gi|50251855|dbj|BAD27784.1| unknown protein [Oryza sativa Japonica Group] gi|113537209|dbj|BAF09592.1| Os02g0667000 [Oryza sativa Japonica Group] gi|218191322|gb|EEC73749.1| hypothetical protein OsI_08395 [Oryza sativa Indica Group] gi|218192133|gb|EEC74560.1| hypothetical protein OsI_10105 [Oryza sativa Indica Group] gi|222623404|gb|EEE57536.1| hypothetical protein OsJ_07857 [Oryza sativa Japonica Group]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 66/76 (86%)

Query: 6  DLQDFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
          DL+ FI+R RVLKLYR+ALR   RAP HARDEL+QT+R E++K+R C D+QKI++LISEG
Sbjct: 6  DLRAFILRARVLKLYRQALRMTRRAPVHARDELRQTVRAEIEKNRRCDDKQKIKFLISEG 65

Query: 66 LERLKGLDEMLDMQGH 81
          L+RLKGLDEMLDM G+
Sbjct: 66 LQRLKGLDEMLDMTGN 81

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
UNIPROTKB|E1C4T4	88	LYRM2 "Uncharacterized protein	0.888	0.818	0.342	1.6e-06
UNIPROTKB|Q9NU23	88	LYRM2 "LYR motif-containing pr	0.864	0.795	0.338	9e-06
MGI|MGI:1917573	88	Lyrm2 "LYR motif containing 2"	0.864	0.795	0.338	1.9e-05
UNIPROTKB|E2R4P7	88	LYRM2 "Uncharacterized protein	0.864	0.795	0.323	2.4e-05
RGD|1597334	88	Lyrm2 "LYR motif containing 2"	0.864	0.795	0.338	2.4e-05
UNIPROTKB|Q32LM5	88	LYRM2 "LYR motif-containing pr	0.864	0.795	0.323	3.9e-05
UNIPROTKB|F1S0C3	88	LYRM2 "Uncharacterized protein	0.864	0.795	0.323	3.9e-05
ASPGD|ASPL0000032293	78	AN10717 [Emericella nidulans (	0.679	0.705	0.385	0.00017
UNIPROTKB|J3KPI7	90	LYRM5 "LYR motif-containing pr	0.777	0.7	0.343	0.00035
UNIPROTKB|F1SFJ7	90	LYRM5 "Uncharacterized protein	0.777	0.7	0.343	0.00035

UNIPROTKB|E1C4T4 LYRM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/73 (34%), Positives = 43/73 (58%)

Query:     7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
             L+ F+ R +VL+LYR+ LR     P  A R  L+Q  R+E  +++D  +   IR +I++G
Sbjct:    13 LRQFLRRQQVLQLYRRILRALRDVPAEADRRHLQQWAREEFRRNKDATEEDAIRMMITQG 72

Query:    66 LERLKGLDEMLDM 78
               +L+ L + L +
Sbjct:    73 HMQLRELQKALKL 85

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9NU23 LYRM2 "LYR motif-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 24/71 (33%), Positives = 42/71 (59%)

Query:     7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
             L+ F+ R +VL LYR+ L+T  + P  + R  LK   R+E  +++   +   IR +I++G
Sbjct:    13 LKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMMITQG 72

Query:    66 LERLKGLDEML 76
               +LK L++ L
Sbjct:    73 NMQLKELEKTL 83

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1917573 Lyrm2 "LYR motif containing 2" [Mus musculus (taxid:10090)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query:     7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
             L+ F+ R +VL LYRK LR   + P  + R  L+   R+E  +++   +   IR +I++G
Sbjct:    13 LKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSATEEDTIRMMITQG 72

Query:    66 LERLKGLDEML 76
               +LK L+  L
Sbjct:    73 NMQLKELERTL 83

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2R4P7 LYRM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query:     7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
             L+ F+ R +VL LYR+ L+   + P  + R  LK   R+E  +++   +   IR +I++G
Sbjct:    13 LKQFLRRQQVLLLYRRILQAIRQVPDDSDRKYLKDWAREEFKRNKSATEEDTIRMMITQG 72

Query:    66 LERLKGLDEML 76
               +LK L++ L
Sbjct:    73 NMQLKELEKTL 83

GO:0005739 "mitochondrion" evidence=IEA

RGD|1597334 Lyrm2 "LYR motif containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query:     7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
             L+ F+ R +VL LYRK LR   + P  + R  L+   R+E  +++   +   IR +I++G
Sbjct:    13 LKQFMRRQQVLLLYRKILRAIKQIPSDSDRKYLQDWAREEFKRNKSATEEDTIRMMITQG 72

Query:    66 LERLKGLDEML 76
               +LK L+  L
Sbjct:    73 NMQLKELERTL 83

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|Q32LM5 LYRM2 "LYR motif-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query:     7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
             L+ F+ R +VL LYR+ L+   + P  + R  LK   R+E  +++   +   IR +I++G
Sbjct:    13 LKQFMRRQQVLLLYRRILQAIRQVPNDSDRKYLKDWAREEFKRNKSATEEDTIRMMITQG 72

Query:    66 LERLKGLDEML 76
               +LK L++ L
Sbjct:    73 NMQLKELEKTL 83

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1S0C3 LYRM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/71 (32%), Positives = 42/71 (59%)

Query:     7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65
             L+ F+ R +VL LYR+ L+   + P  + R  LK   R+E  ++++  +   IR +I++G
Sbjct:    13 LKQFMRRQQVLLLYRRILQAIRQVPNDSDRRYLKDWAREEFKRNKNATEEDTIRMMITQG 72

Query:    66 LERLKGLDEML 76
               +LK L++ L
Sbjct:    73 NMQLKELEKTL 83

GO:0005739 "mitochondrion" evidence=IEA

ASPGD|ASPL0000032293 AN10717 [Emericella nidulans (taxid:162425)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 22/57 (38%), Positives = 29/57 (50%)

Query:    16 VLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDC--KDRQKIRYLISEGLERLK 70
             VL LYRK LR   + P  +R+  K   R E  KH     KD   I YL+ +G  +L+
Sbjct:    11 VLSLYRKCLREIRKKPIESRNNFKSYARAEFQKHISISKKDFSAIEYLLRKGSRQLE 67

GO:0005739 "mitochondrion" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0034553 "mitochondrial respiratory chain complex II assembly" evidence=IEA

UNIPROTKB|J3KPI7 LYRM5 "LYR motif-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query:    12 VRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKG 71
             +RG VLKLY+  L    R  P   D  K+ ++    K++D K+ +KI+ LI++G   +K 
Sbjct:     7 LRGEVLKLYKNLLYLG-RDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKE 65

Query:    72 LDEM 75
             L+ +
Sbjct:    66 LEAL 69

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SFJ7 LYRM5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query:    12 VRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKG 71
             +RG VL LY+  L    R  P   D  K+ ++    K++D KD +KI+ LI+ G   +K 
Sbjct:     7 LRGEVLNLYKNLLYLG-RDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIARGKFVMKE 65

Query:    72 LDEM 75
             L+ +
Sbjct:    66 LEAL 69

GO:0005739 "mitochondrion" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	81
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	3e-11
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	5e-11

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 53.0 bits (128), Expect = 3e-11
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 15 RVLKLYRKALRTANRAPPH-ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL 72
           VL LYR+ LR A + P +  R+ +++ IR E  K++D  D +KI  L+ EG ++L+ L
Sbjct: 2  EVLSLYRQLLRAARKFPDYNFREYIRRRIRDEFRKNKDLTDPEKIEKLLKEGKKQLELL 60

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 52.2 bits (126), Expect = 5e-11
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 15 RVLKLYRKALRTANRAP-PHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLK 70
           VL LYR+ LR A + P  +AR+  ++ IR E  K+++  D +KI  L+ EG ++L+
Sbjct: 2  EVLSLYRQLLREARKFPDYNAREYFRRRIRDEFRKNKNLTDPEKIEALLKEGKKQLE 58

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.78
KOG3801	94	consensus Uncharacterized conserved protein BCN92	99.77
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.76
KOG4620	80	consensus Uncharacterized conserved protein [Funct	99.6
KOG3426	124	consensus NADH:ubiquinone oxidoreductase, NDUFA6/B	99.27
KOG4100	125	consensus Uncharacterized conserved protein [Funct	98.8
KOG3466	157	consensus NADH:ubiquinone oxidoreductase, NDUFB9/B	98.64
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	98.21
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	95.88
KOG3365	145	consensus NADH:ubiquinone oxidoreductase, NDUFA5/B	80.46

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.78  E-value=5e-19  Score=99.19  Aligned_cols=58  Identities=41%  Similarity=0.624  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhhcCChhh-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 034848           14 GRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKG   71 (81)
Q Consensus        14 ~~VL~LYR~~LR~~~~~~~~~-r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~   71 (81)
                      ++||+|||++||+++.+|+.. +.++...||++|++|+++|||..|+.++..|+..|++
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~   59 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM   59 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence            479999999999999999854 9999999999999999999999999999999999874

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]

Probab=99.77  E-value=4.4e-18  Score=103.22  Aligned_cols=69  Identities=23%  Similarity=0.387  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHHHHHHhhcCChh-hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034848           11 IVRGRVLKLYRKALRTANRAPPH-ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQ   79 (81)
Q Consensus        11 ~~r~~VL~LYR~~LR~~~~~~~~-~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~~~~   79 (81)
                      +.+++|++|||.+||.++.+|++ .|+|+.+++|+.|++|++++||.+|+.++++|+++|+.++++.-..
T Consensus         4 ~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~   73 (94)
T KOG3801|consen    4 VSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIG   73 (94)
T ss_pred             ccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999985 6999999999999999999999999999999999999999987653

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.76  E-value=2.1e-18  Score=97.74  Aligned_cols=60  Identities=33%  Similarity=0.571  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHhhcCCh-hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 034848           14 GRVLKLYRKALRTANRAPP-HARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLD   73 (81)
Q Consensus        14 ~~VL~LYR~~LR~~~~~~~-~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~   73 (81)
                      ++||+|||++||.++.||+ ..|.++...||++|++|+++|||+.|+.++..|+++|+.++
T Consensus         1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~   61 (61)
T PF13232_consen    1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR   61 (61)
T ss_pred             ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            4799999999999999997 46899999999999999999999999999999999998763

>KOG4620 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=7.4e-15  Score=86.04  Aligned_cols=66  Identities=27%  Similarity=0.331  Sum_probs=59.8

Q ss_pred             HhhHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 034848           10 FIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCK--DRQKIRYLISEGLERLKGLDEM   75 (81)
Q Consensus        10 f~~r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr~~t--D~~~I~~ll~~g~~~l~~~~~~   75 (81)
                      .-++++||+|||++||+++..|..+..-|..+|++||++|+++.  |.-.|+.|+..|+++++.+...
T Consensus         5 SgLQrqVlhlYR~~lraa~~Kp~~~~~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~p   72 (80)
T KOG4620|consen    5 SGLQRQVLHLYRDLLRAARGKPGAEARRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSP   72 (80)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCc
Confidence            35789999999999999999998777778899999999999996  9999999999999999988654

>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]

Probab=99.27  E-value=3.7e-11  Score=75.78  Aligned_cols=73  Identities=27%  Similarity=0.363  Sum_probs=65.0

Q ss_pred             CCCCChhhHhhHHHHHHHHHHHHHHhhcCChh------hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 034848            2 VLPFDLQDFIVRGRVLKLYRKALRTANRAPPH------ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDE   74 (81)
Q Consensus         2 ~~~~sl~~f~~r~~VL~LYR~~LR~~~~~~~~------~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~   74 (81)
                      +|-.|.+--..|++|+.|||.+.|.+..+...      .-..++..||++|.+|.|+|||..|+.|+-+|..+|+.+-.
T Consensus        12 ~Pi~S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv~   90 (124)
T KOG3426|consen   12 VPINSANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIVD   90 (124)
T ss_pred             CCCccCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHHH
Confidence            57788899999999999999999999887541      35678999999999999999999999999999999988754

>KOG4100 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=8e-08  Score=60.82  Aligned_cols=66  Identities=23%  Similarity=0.322  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034848           14 GRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEMLDMQG   80 (81)
Q Consensus        14 ~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~~~~~   80 (81)
                      .+|--|||++||..+-.|.+.|...-.+||+||+.|+++ +|..+.-.+.+=+.=..++..+.+.+|
T Consensus        10 ~rvrlLYkriLrlHr~lp~~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~~g   75 (125)
T KOG4100|consen   10 PRVRLLYKRILRLHRGLPAELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSSAG   75 (125)
T ss_pred             chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            456669999999999999988999999999999999999 888888887655555555555554444

>KOG3466 consensus NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Energy production and conversion]

Probab=98.64  E-value=1.8e-07  Score=61.08  Aligned_cols=67  Identities=25%  Similarity=0.312  Sum_probs=57.0

Q ss_pred             CChhhHhhHHHHHHHHHHHHHHhhcCChh--hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 034848            5 FDLQDFIVRGRVLKLYRKALRTANRAPPH--ARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGL   72 (81)
Q Consensus         5 ~sl~~f~~r~~VL~LYR~~LR~~~~~~~~--~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~   72 (81)
                      .+....-++++|++|||++||....|...  --.|..--||..|+.|++ .|..++..||..|++++-..
T Consensus         5 ~f~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~   73 (157)
T KOG3466|consen    5 YFARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEW   73 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhh
Confidence            34455668899999999999999999862  255677889999999999 99999999999999998654

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=98.21  E-value=9.2e-06  Score=49.75  Aligned_cols=60  Identities=28%  Similarity=0.411  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhhcCChhh--------HHHHHHHH----HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034848           16 VLKLYRKALRTANRAPPHA--------RDELKQTI----RQEMDKHRDCKDRQKIRYLISEGLERLKGLDEM   75 (81)
Q Consensus        16 VL~LYR~~LR~~~~~~~~~--------r~~~~~~i----R~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~   75 (81)
                      |++|||.+||..+.+|...        +..+..+|    +.+|+.|.+.+++......+...+.-+..++.+
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~q   72 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQ   72 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999988522        26777889    999999999997777777776666655555543

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=95.88  E-value=0.087  Score=29.46  Aligned_cols=51  Identities=22%  Similarity=0.353  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCChh--hHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 034848           12 VRGRVLKLYRKALRTANRAPPH--ARDELKQTIRQEMDKHRDCKDRQKIRYLI   62 (81)
Q Consensus        12 ~r~~VL~LYR~~LR~~~~~~~~--~r~~~~~~iR~eF~~nr~~tD~~~I~~ll   62 (81)
                      .|.....||.++|+....+|.+  .|.+.-.-+++.+.--...+|.++|+..|
T Consensus         3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i   55 (57)
T PF04716_consen    3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI   55 (57)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence            4667889999999999999974  59999999999998888899999998876

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]

Probab=80.46  E-value=14  Score=24.35  Aligned_cols=65  Identities=20%  Similarity=0.270  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHhhcCChh--hHHHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHHHHHHHHHHH
Q 034848           13 RGRVLKLYRKALRTANRAPPH--ARDELKQTIRQEMDKHRDCKDRQ---------KIRYLISEGLERLKGLDEMLD   77 (81)
Q Consensus        13 r~~VL~LYR~~LR~~~~~~~~--~r~~~~~~iR~eF~~nr~~tD~~---------~I~~ll~~g~~~l~~~~~~~~   77 (81)
                      +++...||-++|.....+|.+  .|.+.....++...--+.+.|..         .|+..+.++..+|++.+-++.
T Consensus        50 ~~rl~~ly~kil~~~eqIpkn~ayRk~Tesit~~kLa~~k~E~d~K~ledql~gGqIEE~i~qa~~el~m~~k~~~  125 (145)
T KOG3365|consen   50 HERLRDLYTKILDVLEQIPKNAAYRKYTESITNQKLAMLKAEPDVKKLEDQLQGGQIEEVIEQAEAELNMGRKMFE  125 (145)
T ss_pred             HHHHHHHHHHhHHHHHHcchhhhhhHHHHHHHHHHHHHHHcchHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhc
Confidence            467778999999999999974  47777666666665555555543         466778888888888877664

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
4b6x_A	90	AVRRPS4, avirulence protein; toxin, type 3 secrete	86.53

>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}

Probab=86.53  E-value=2.1  Score=24.96  Aligned_cols=47  Identities=11%  Similarity=0.172  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHHHHHHHHHHHHHhcC
Q 034848           34 ARDELKQTIRQEMDKHRDCKDRQKI---RYLISEGLERLKGLDEMLDMQG   80 (81)
Q Consensus        34 ~r~~~~~~iR~eF~~nr~~tD~~~I---~~ll~~g~~~l~~~~~~~~~~~   80 (81)
                      +.+.++..+++|.....++.+|..|   +.+|++++.+|..+.+.+..-|
T Consensus        33 DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g   82 (90)
T 4b6x_A           33 DKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLR   82 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3556778899999999999999877   5789999999999998876543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00