Citrus Sinensis ID: 034871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ
Secondary Structure (PSIPRED)
ccccccccEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccccccEccHHHHHHHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHHcEEEEEcccccccc
Coil and Loop (DISEMBL)
maysrtetyvllepgveekfVTEEELKARLKYWLENWagqvgkgglppdlakFATIDEAVAFLITNVCElelqgdvgsiq
Flexible Loop (DISEMBL)
maysrtetyvllepgveekfVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCElelqgdvgsiq
Low Complexity Region (SEG)
MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ
Disordered region (IsUnstruct)
*******TYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQ*******
Disordered Region (DISOPRED)
*****TETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGD*****
Disordered Region (DISEMBL)
MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ
Disordered Region (DISPRO)
****RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGD*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
359488522	151	PREDICTED: uncharacterized protein LOC10	0.937	0.496	0.696	5e-24
388494090	151	unknown [Lotus japonicus]	0.937	0.496	0.670	2e-21
356573538	152	PREDICTED: uncharacterized protein LOC10	0.937	0.493	0.658	2e-21
270342082	152	hypothetical protein [Phaseolus vulgaris	0.937	0.493	0.658	5e-21
326494344	151	predicted protein [Hordeum vulgare subsp	0.887	0.470	0.6	8e-20
297805830	157	hypothetical protein ARALYDRAFT_916402 [	0.95	0.484	0.575	2e-19
21553859	156	unknown [Arabidopsis thaliana]	0.925	0.474	0.589	4e-19
18421842	156	chlororespiratory reduction 7 [Arabidops	0.925	0.474	0.589	6e-19
118489214	162	unknown [Populus trichocarpa x Populus d	0.925	0.456	0.615	6e-19
357136583	154	PREDICTED: uncharacterized protein LOC10	0.9	0.467	0.592	1e-18

>gi|359488522|ref|XP_002280011.2| PREDICTED: uncharacterized protein LOC100249838 [Vitis vinifera] gi|296082204|emb|CBI21209.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%), Gaps = 4/79 (5%)

Query: 2   AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVA 61
           AYS+TETYVL+EPG +E+FV++EELKARLK WLENW G+     LPPDLAKF TID+AV 
Sbjct: 70  AYSQTETYVLMEPGKDEEFVSQEELKARLKGWLENWPGK----ALPPDLAKFQTIDDAVM 125

Query: 62  FLITNVCELELQGDVGSIQ 80
           +L+  VCELE+ GDVGSIQ
Sbjct: 126 YLVKAVCELEIDGDVGSIQ 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494090|gb|AFK35111.1| unknown [Lotus japonicus]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 63/79 (79%), Gaps = 4/79 (5%)

Query: 2   AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVA 61
           A  RTETYVLLEPG +EKFV+EEELKA LK  L NW G+     LPPDLA++ TIDEAV+
Sbjct: 70  ANERTETYVLLEPGEDEKFVSEEELKATLKERLTNWPGK----ALPPDLARYETIDEAVS 125

Query: 62  FLITNVCELELQGDVGSIQ 80
           FL+ +VCELE+ GDVGS+Q
Sbjct: 126 FLVRSVCELEIDGDVGSVQ 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573538|ref|XP_003554915.1| PREDICTED: uncharacterized protein LOC100801516 [Glycine max]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%), Gaps = 4/79 (5%)

Query: 2   AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVA 61
           A  RTETYVLLEPG +E+FV+EEELKA LK  LENW G+V    LPPDL+++  ID+AV+
Sbjct: 71  ANERTETYVLLEPGQDERFVSEEELKATLKELLENWPGKV----LPPDLSRYENIDDAVS 126

Query: 62  FLITNVCELELQGDVGSIQ 80
           FL+ +VCELE+ GDVGSIQ
Sbjct: 127 FLVRSVCELEIDGDVGSIQ 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270342082|gb|ACZ74666.1| hypothetical protein [Phaseolus vulgaris]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 63/79 (79%), Gaps = 4/79 (5%)

Query: 2   AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVA 61
           A  RTETYVLLEPG +E+FV+EEELKA LK  LENW G+V    LPPDL+++  IDEAV+
Sbjct: 71  ANERTETYVLLEPGKDERFVSEEELKATLKELLENWPGKV----LPPDLSRYEDIDEAVS 126

Query: 62  FLITNVCELELQGDVGSIQ 80
           FL+  VCELE+ GDVGS+Q
Sbjct: 127 FLVRYVCELEIDGDVGSVQ 145

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326494344|dbj|BAJ90441.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326520968|dbj|BAJ92847.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 63/75 (84%), Gaps = 4/75 (5%)

Query: 6   TETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLIT 65
           ++TYVLLEPG+EE+FV++EEL+ RL+ WLE W G    G LPPDLA+F T+D+AV++L+ 
Sbjct: 74  SDTYVLLEPGMEEEFVSKEELEERLRGWLERWPG----GALPPDLARFDTVDDAVSYLVR 129

Query: 66  NVCELELQGDVGSIQ 80
           +VCELE+ G+VGS+Q
Sbjct: 130 SVCELEVDGEVGSVQ 144

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805830|ref|XP_002870799.1| hypothetical protein ARALYDRAFT_916402 [Arabidopsis lyrata subsp. lyrata] gi|297316635|gb|EFH47058.1| hypothetical protein ARALYDRAFT_916402 [Arabidopsis lyrata subsp. lyrata]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1   MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAV 60
           + YS ++TYVLLE G +E+FV+E+ELKA+L+ WLENW        LPPDLA+F  +DEAV
Sbjct: 75  VHYSNSDTYVLLEAGQDEQFVSEDELKAKLRGWLENWPV----NSLPPDLARFNDLDEAV 130

Query: 61  AFLITNVCELELQGDVGSIQ 80
            FL+  VCELE+ G+VGS+Q
Sbjct: 131 DFLVKAVCELEIHGEVGSVQ 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553859|gb|AAM62952.1| unknown [Arabidopsis thaliana]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 4/78 (5%)

Query: 3   YSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAF 62
           +S ++TYVLLE G +E+FVTE+ELKA+L+ WLENW        LPPDLA+F  +DEAV F
Sbjct: 76  HSNSDTYVLLEAGQDEQFVTEDELKAKLREWLENWPV----NSLPPDLARFDDLDEAVDF 131

Query: 63  LITNVCELELQGDVGSIQ 80
           L+  VCELE+ G+VGS+Q
Sbjct: 132 LVKAVCELEIDGEVGSVQ 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18421842|ref|NP_568563.1| chlororespiratory reduction 7 [Arabidopsis thaliana] gi|9758849|dbj|BAB09375.1| unnamed protein product [Arabidopsis thaliana] gi|17529164|gb|AAL38808.1| unknown protein [Arabidopsis thaliana] gi|21281014|gb|AAM45076.1| unknown protein [Arabidopsis thaliana] gi|332007025|gb|AED94408.1| chlororespiratory reduction 7 [Arabidopsis thaliana]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 4/78 (5%)

Query: 3   YSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAF 62
           +S ++TYVLLE G +E+FVTE+ELKA+L+ WLENW        LPPDLA+F  +DEAV F
Sbjct: 76  HSNSDTYVLLEAGQDEQFVTEDELKAKLRGWLENWPV----NSLPPDLARFDDLDEAVDF 131

Query: 63  LITNVCELELQGDVGSIQ 80
           L+  VCELE+ G+VGS+Q
Sbjct: 132 LVKAVCELEIDGEVGSVQ 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489214|gb|ABK96413.1| unknown [Populus trichocarpa x Populus deltoides]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 62/78 (79%), Gaps = 4/78 (5%)

Query: 3   YSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAF 62
           + +T TYVLLEPG +EKFV+EEELKA LK +LENW     +  LP DLAKF T+D+A +F
Sbjct: 82  HQKTGTYVLLEPGEDEKFVSEEELKAVLKGYLENWP----RPTLPLDLAKFETVDDAASF 137

Query: 63  LITNVCELELQGDVGSIQ 80
           L+++VCELE+ GDVGS+Q
Sbjct: 138 LVSSVCELEIDGDVGSVQ 155

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357136583|ref|XP_003569883.1| PREDICTED: uncharacterized protein LOC100831735 [Brachypodium distachyon]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 63/76 (82%), Gaps = 4/76 (5%)

Query: 5   RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLI 64
           +++TYVLLEPG+EE+FV++EEL+ARL+ WLE W G      LPPDLA F T+D+AV++L+
Sbjct: 76  QSDTYVLLEPGMEEEFVSKEELEARLRGWLERWPGD----ELPPDLAVFDTLDDAVSYLV 131

Query: 65  TNVCELELQGDVGSIQ 80
            +VCELE+ G+VGS+Q
Sbjct: 132 RSVCELEIDGEVGSVQ 147

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2157250	156	CRR7 "AT5G39210" [Arabidopsis	0.925	0.474	0.589	4.4e-20

TAIR|locus:2157250 CRR7 "AT5G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 46/78 (58%), Positives = 60/78 (76%)

Query:     3 YSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAF 62
             +S ++TYVLLE G +E+FVTE+ELKA+L+ WLENW        LPPDLA+F  +DEAV F
Sbjct:    76 HSNSDTYVLLEAGQDEQFVTEDELKAKLRGWLENWP----VNSLPPDLARFDDLDEAVDF 131

Query:    63 LITNVCELELQGDVGSIQ 80
             L+  VCELE+ G+VGS+Q
Sbjct:   132 LVKAVCELEIDGEVGSVQ 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        80   0.00091  102 3  11 22  0.46    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  108 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.55u 0.14s 9.69t   Elapsed:  00:00:01
  Total cpu time:  9.55u 0.14s 9.69t   Elapsed:  00:00:01
  Start:  Mon May 20 17:53:56 2013   End:  Mon May 20 17:53:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0010275 "NAD(P)H dehydrogenase complex assembly" evidence=IGI;IMP

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=IGI

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038032001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (158 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•			•		0.702
	ndhM	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; NDH-1 shuttles elect [...] (208 aa)			•				•		0.616
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•	•			•		0.604
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•					0.600
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.581
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•	•			•		0.575
	GSVIVG00005655001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole gen [...] (254 aa)				•			•		0.568
	GSVIVG00023239001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa)			•	•					0.550
	GSVIVG00038203001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (175 aa)			•	•					0.537
	GSVIVG00030316001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (102 aa)			•	•					0.537

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
pfam12095	83	pfam12095, DUF3571, Protein of unknown function (D	9e-17

>gnl|CDD|192936 pfam12095, DUF3571, Protein of unknown function (DUF3571)

 Score = 67.3 bits (165), Expect = 9e-17
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 7  ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66
          + YV+LEPG  E+F+T  EL A LK WL           LP DLAK  ++D     L+  
Sbjct: 10 DHYVVLEPGQPEQFLTPAELLAWLKEWLTR------LDSLPADLAKLPSLDAQAQRLLDT 63

Query: 67 VCELELQGDVGSIQ 80
           CELE+ G   ++Q
Sbjct: 64 ACELEI-GPGLTLQ 76

This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
PF12095	83	DUF3571: Protein of unknown function (DUF3571); In	100.0

>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised

Probab=100.00  E-value=5.6e-37  Score=201.69  Aligned_cols=71  Identities=46%  Similarity=0.869  Sum_probs=53.7

Q ss_pred             CccccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcccccccCCcccCC
Q 034871            2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ   80 (80)
Q Consensus         2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pG~~~~~   80 (80)
                      || ++|||||||||+||||||++||++|||+||++.      ++||+||+||+|+++||+||++|+|||||+||. +||
T Consensus         6 m~-~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~------~~LP~dL~~~~s~~~qa~~Lldt~CeLeigpg~-~lQ   76 (83)
T PF12095_consen    6 MY-QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQ------DDLPPDLAKFSSVEEQAQYLLDTACELEIGPGG-YLQ   76 (83)
T ss_dssp             S------EEEEESSS-SEEE-HHHHHHHHHHHHHHT------TTS-HHHHH---HHHHHHHHHHH---EEEETTE-EEE
T ss_pred             hh-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcC------CCCCHHHHhCCCHHHHHHHHHHhceeeecCCCC-EEE
Confidence            89 999999999999999999999999999999994      489999999999999999999999999999996 665

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
2krx_A	94	ASL3597 protein; structural genomics, PSI-2, prote	1e-22

>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP} Length = 94

 Score = 81.8 bits (202), Expect = 1e-22
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 7  ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66
          + +V+LE    E+F+T  EL  +LK  LE  +       LP +L K  ++      LI  
Sbjct: 10 DNFVVLETNQPEQFLTTIELLEKLKGELEKISFSD----LPLELQKLDSLPAQAQHLIDT 65

Query: 67 VCELELQGDVGSIQ 80
           CEL++ G    +Q
Sbjct: 66 SCELDV-GAGKYLQ 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
2krx_A	94	ASL3597 protein; structural genomics, PSI-2, prote	100.0

>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}

Probab=100.00  E-value=9.5e-39  Score=213.14  Aligned_cols=73  Identities=32%  Similarity=0.496  Sum_probs=70.6

Q ss_pred             CccccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcccccccCCcccCC
Q 034871            2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ   80 (80)
Q Consensus         2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pG~~~~~   80 (80)
                      || |+|||||||||+||||||++||++|||+||+++|+    ++||+||+||+|+++||+||++|+|||||+||+ +||
T Consensus         6 my-q~D~yVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~----~~LP~dL~~~~s~~~qaq~Lldt~CELei~pG~-~lQ   78 (94)
T 2krx_A            6 MY-QQDNFVVLETNQPEQFLTTIELLEKLKGELEKISF----SDLPLELQKLDSLPAQAQHLIDTSCELDVGAGK-YLQ   78 (94)
T ss_dssp             SC-CCCCEEEEESSSCSEEECHHHHHHHHHHHHHHSCT----TTSCHHHHHCCCHHHHHHHHHHHCCCEEEETTE-EEE
T ss_pred             hc-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHhCcc----ccCCHHHHhCCCHHHHHHHHHHheeeeeeCCCC-EEE
Confidence            89 99999999999999999999999999999999985    499999999999999999999999999999998 776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00