Citrus Sinensis ID: 034904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MRRIPRIKFPQRHPKSSASGSVSQTQSASNQNLSARSSSDVPAAPANTAVGGKASLQPKRTPVSNREIEAIMMGFTEEA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mrriprikfpqrhpkssasgsvsqtqsasnqnlsarsssdvpaapantavggkaslqpkrtpvsnREIEAIMMGFTEEA
Flexible Loop (DISEMBL)
mrriprikfpqrhpkssasgsvsqtqSASNQNLSARSSSDVPAAPANtavggkaslqpkrtpvsnrEIEAIMMGFTEEA
Low Complexity Region (SEG)
MRRIPRIKFPQRHPKssasgsvsqtqsasNQNLSARSSSDVPAAPANTAVGGKASLQPKRTPVSNREIEAIMMGFTEEA
Disordered region (IsUnstruct)
*******************************************************************************
Disordered Region (DISOPRED)
*RRIPRI**********************************************************REIEAIMMGFT***
Disordered Region (DISEMBL)
MRRIPRIKF*****************************************GGKASLQPKRTPVSNREIEAIMMGFTEEA
Disordered Region (DISPRO)
**RIPRIKFP****************************************************VSNREIE*IMMGFTEE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRIPRIKFPQRHPKSSASGSVSQTQSASNQNLSARSSSDVPAAPANTAVGGKASLQPKRTPVSNREIEAIMMGFTEEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
18420758	75	uncharacterized protein [Arabidopsis tha	0.911	0.96	0.689	5e-19
224112667	91	predicted protein [Populus trichocarpa]	0.936	0.813	0.675	5e-19
302144041	75	unnamed protein product [Vitis vinifera]	0.886	0.933	0.662	2e-18
225455090	82	PREDICTED: uncharacterized protein LOC10	0.886	0.853	0.662	2e-18
297808421	75	hypothetical protein ARALYDRAFT_489276 [	0.911	0.96	0.675	1e-16
356497315	80	PREDICTED: uncharacterized protein LOC10	0.860	0.85	0.623	1e-14
449456385	100	PREDICTED: uncharacterized protein LOC10	0.924	0.73	0.605	2e-14
255537799	80	conserved hypothetical protein [Ricinus	0.873	0.862	0.608	3e-14
255638041	80	unknown [Glycine max]	0.860	0.85	0.610	3e-14
388495966	79	unknown [Lotus japonicus]	0.873	0.873	0.6	2e-13

>gi|18420758|ref|NP_568440.1| uncharacterized protein [Arabidopsis thaliana] gi|21553990|gb|AAM63071.1| unknown [Arabidopsis thaliana] gi|28466789|gb|AAO44003.1| At5g24165 [Arabidopsis thaliana] gi|110743430|dbj|BAE99601.1| hypothetical protein [Arabidopsis thaliana] gi|332005883|gb|AED93266.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 59/74 (79%), Gaps = 2/74 (2%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQTQSASNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
          MRRIPRIKFPQRH  SS SG    + S   +N++A  SSDVPAAP NTA GGKASLQPKR
Sbjct: 1  MRRIPRIKFPQRHSISSGSGPAPGSVSGVKKNVTA--SSDVPAAPKNTADGGKASLQPKR 58

Query: 61 TPVSNREIEAIMMG 74
          TPVS++EIE+IM+G
Sbjct: 59 TPVSDKEIESIMLG 72

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112667|ref|XP_002332733.1| predicted protein [Populus trichocarpa] gi|224118240|ref|XP_002317768.1| predicted protein [Populus trichocarpa] gi|118488727|gb|ABK96174.1| unknown [Populus trichocarpa] gi|222837543|gb|EEE75908.1| predicted protein [Populus trichocarpa] gi|222858441|gb|EEE95988.1| predicted protein [Populus trichocarpa]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 61/77 (79%), Gaps = 3/77 (3%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQTQSASNQ---NLSARSSSDVPAAPANTAVGGKASLQ 57
          ++RIPRIKFPQRH KSS+SG V QTQ+AS     +    SSS+VPA+PAN A GGKASLQ
Sbjct: 12 VKRIPRIKFPQRHAKSSSSGFVPQTQAASTDTEIHHFIMSSSEVPASPANIAEGGKASLQ 71

Query: 58 PKRTPVSNREIEAIMMG 74
          PKRTPVS REIEA+ +G
Sbjct: 72 PKRTPVSEREIEAVQLG 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144041|emb|CBI23146.3| unnamed protein product [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 4/74 (5%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQTQSASNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
          M+RIPRIKFPQRHPKSSAS       +  + +L   S+S+VPA P NTA+GGKASLQPKR
Sbjct: 1  MKRIPRIKFPQRHPKSSASA----MPTNEDAHLIFTSTSEVPAPPINTAMGGKASLQPKR 56

Query: 61 TPVSNREIEAIMMG 74
          TPVS+REIEAI++G
Sbjct: 57 TPVSDREIEAILLG 70

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455090|ref|XP_002264511.1| PREDICTED: uncharacterized protein LOC100265804 [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 4/74 (5%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQTQSASNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
          M+RIPRIKFPQRHPKSSAS       +  + +L   S+S+VPA P NTA+GGKASLQPKR
Sbjct: 8  MKRIPRIKFPQRHPKSSASA----MPTNEDAHLIFTSTSEVPAPPINTAMGGKASLQPKR 63

Query: 61 TPVSNREIEAIMMG 74
          TPVS+REIEAI++G
Sbjct: 64 TPVSDREIEAILLG 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808421|ref|XP_002872094.1| hypothetical protein ARALYDRAFT_489276 [Arabidopsis lyrata subsp. lyrata] gi|297317931|gb|EFH48353.1| hypothetical protein ARALYDRAFT_489276 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 60/74 (81%), Gaps = 2/74 (2%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQTQSASNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
          M+RIPRIKFPQRH  SS SGS   + +   +N++A  SSDVPAAP NTA GGKASLQPKR
Sbjct: 1  MKRIPRIKFPQRHSISSGSGSAPGSVAGGKKNVTA--SSDVPAAPKNTAEGGKASLQPKR 58

Query: 61 TPVSNREIEAIMMG 74
          TPVS++EIE+IM+G
Sbjct: 59 TPVSDKEIESIMLG 72

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497315|ref|XP_003517506.1| PREDICTED: uncharacterized protein LOC100816379 [Glycine max]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 9/77 (11%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQTQSAS---NQNLSARSSSDVPAAPANTAVGGKASLQ 57
          M+RIPRIKFPQRHPK S SGS  +TQ++S   + +L+  SSS+     A+T+VGGKASLQ
Sbjct: 7  MKRIPRIKFPQRHPKPS-SGSTPETQASSSTTDVSLAFFSSSN-----ASTSVGGKASLQ 60

Query: 58 PKRTPVSNREIEAIMMG 74
          PKRTPVS  EIEAI++G
Sbjct: 61 PKRTPVSKEEIEAILLG 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456385|ref|XP_004145930.1| PREDICTED: uncharacterized protein LOC101222729 [Cucumis sativus] gi|449497339|ref|XP_004160375.1| PREDICTED: uncharacterized protein LOC101228345 [Cucumis sativus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 59/76 (77%), Gaps = 3/76 (3%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVS-QTQSASNQNLS--ARSSSDVPAAPANTAVGGKASLQ 57
          ++RIPRIKFP RHPKSS+S   + Q+Q   ++++   A S S+VPA P N AVGGKASL 
Sbjct: 8  LKRIPRIKFPDRHPKSSSSSGSALQSQHNPDKDIGYYALSGSNVPAPPQNMAVGGKASLL 67

Query: 58 PKRTPVSNREIEAIMM 73
          PKRTPVS+REIEAI++
Sbjct: 68 PKRTPVSDREIEAILV 83

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537799|ref|XP_002509966.1| conserved hypothetical protein [Ricinus communis] gi|223549865|gb|EEF51353.1| conserved hypothetical protein [Ricinus communis]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 51/74 (68%), Gaps = 5/74 (6%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQTQSASNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
          ++RIP IKFPQRH KSS S S S   +  N NL   SSS      A+  VGGKASLQPKR
Sbjct: 9  LKRIPLIKFPQRHLKSSGSASKSHESAVGNGNLPFFSSSK-----ASMTVGGKASLQPKR 63

Query: 61 TPVSNREIEAIMMG 74
          TPVSN EIEAI++G
Sbjct: 64 TPVSNDEIEAILLG 77

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638041|gb|ACU19335.1| unknown [Glycine max]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 59/77 (76%), Gaps = 9/77 (11%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQTQSAS---NQNLSARSSSDVPAAPANTAVGGKASLQ 57
          M+RIPRIKFPQRHPK   SGS  +TQ++S   + +L+  SSS+     A+T+VGGKASLQ
Sbjct: 7  MKRIPRIKFPQRHPKP-FSGSTPETQASSSTTDVSLAFFSSSN-----ASTSVGGKASLQ 60

Query: 58 PKRTPVSNREIEAIMMG 74
          PKRTPVS  EIEAI++G
Sbjct: 61 PKRTPVSKEEIEAILLG 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495966|gb|AFK36049.1| unknown [Lotus japonicus]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 6/75 (8%)

Query: 1  MRRIPRIKFPQRHPKSSASGSVSQ-TQSASNQNLSARSSSDVPAAPANTAVGGKASLQPK 59
          ++RIPRIKFP RH KSS S    Q + SA++ NLS  SSS      A+T++GGKASLQPK
Sbjct: 7  LKRIPRIKFPNRHGKSSGSAPDKQPSSSATDANLSFFSSSK-----ASTSLGGKASLQPK 61

Query: 60 RTPVSNREIEAIMMG 74
          RTPVS  EIEAI++G
Sbjct: 62 RTPVSKEEIEAILLG 76

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
TAIR|locus:505006633	75	AT5G24165 "AT5G24165" [Arabido	0.911	0.96	0.621	9.5e-18
TAIR|locus:505006518	77	AT4G23885 "AT4G23885" [Arabido	0.860	0.883	0.418	1.2e-08

TAIR|locus:505006633 AT5G24165 "AT5G24165" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 46/74 (62%), Positives = 53/74 (71%)

Query:     1 MRRIPRIKFPQRHPKXXXXXXXXXXXXXXNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
             MRRIPRIKFPQRH                 +N++A  SSDVPAAP NTA GGKASLQPKR
Sbjct:     1 MRRIPRIKFPQRHSISSGSGPAPGSVSGVKKNVTA--SSDVPAAPKNTADGGKASLQPKR 58

Query:    61 TPVSNREIEAIMMG 74
             TPVS++EIE+IM+G
Sbjct:    59 TPVSDKEIESIMLG 72

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:505006518 AT4G23885 "AT4G23885" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:     1 MRRIPRIKFPQRHPKXXXXXXXXXXXXXXNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
             ++RIPRIKFPQRH                +  L   + +++         GGKAS QPKR
Sbjct:     7 LKRIPRIKFPQRHINPSASEGKSQVANEAD-TLFFSNLNNI-----QKTTGGKASSQPKR 60

Query:    61 TPVSNREIEAIMMG 74
             TPVSN E+EAI++G
Sbjct:    61 TPVSNEEMEAILLG 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.126   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       79        65   0.00091  102 3  11 23  0.44    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  397 (42 KB)
  Total size of DFA:  66 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.02u 0.20s 8.22t   Elapsed:  00:00:00
  Total cpu time:  8.02u 0.20s 8.22t   Elapsed:  00:00:00
  Start:  Fri May 10 03:25:21 2013   End:  Fri May 10 03:25:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G24165	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G23885.1); Has 20 Blast hits to 20 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (75 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G01170	ozone-responsive stress-related protein, putative; ozone-responsive stress-related protein, put [...] (83 aa)				•					0.694
	AT2G05310	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (125 aa)				•					0.548
	PSAN	PSAN; calmodulin binding; Encodes the only subunit of photosystem I located entirely in the thy [...] (181 aa)				•					0.546
	AT4G16410	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (185 aa)				•					0.546
	AT1G75690	chaperone protein dnaJ-related; chaperone protein dnaJ-related; FUNCTIONS IN- unfolded protein [...] (154 aa)				•					0.501
	PSRP5	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5); PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5 (PSR [...] (148 aa)				•					0.492
	AT5G54600	50S ribosomal protein L24, chloroplast (CL24); 50S ribosomal protein L24, chloroplast (CL24); F [...] (198 aa)				•					0.488
	AT5G38980	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (92 aa)				•					0.486
	PSAE-1	PSAE-1 (PSA E1 KNOCKOUT); catalytic; mutant has Decreased effective quantum yield of photosyste [...] (143 aa)				•					0.484
	PSAE-2	PSAE-2 (photosystem I subunit E-2); catalytic; Encodes subunit E of photosystem I. ; Stabilizes [...] (145 aa)				•					0.474

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
PF10937	112	DUF2638: Protein of unknown function (DUF2638); In	97.63

>PF10937 DUF2638: Protein of unknown function (DUF2638); InterPro: IPR020373 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.63  E-value=0.00022  Score=48.79  Aligned_cols=17  Identities=53%  Similarity=0.687  Sum_probs=15.9

Q ss_pred             cccCCHHHHHHHHhccc
Q 034904           60 RTPVSNREIEAIMMGFT   76 (79)
Q Consensus        60 RtpvS~~EIEAIllGG~   76 (79)
                      |.|++|+|||+|+-||+
T Consensus        96 r~p~se~EiE~InsGGA  112 (112)
T PF10937_consen   96 RKPISEEEIEAINSGGA  112 (112)
T ss_pred             cCCCCHHHHHHHHcCCC
Confidence            78999999999999995

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36 [, , ].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00