Citrus Sinensis ID: 034961

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MPLMAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLVSTRRQ
Secondary Structure (PSIPRED)
ccccccccccccHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHcccHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mplmapgmggslyEVLRVEPTAMISEIKTVYRSLAKVYhhdlssngwdftEIHNAyetlsdpkaravydmslvstrrq
Flexible Loop (DISEMBL)
mplmapgmggSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYetlsdpkaravYDMSLVSTRRQ
Low Complexity Region (SEG)
MPLMAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLVSTRRQ
Disordered region (IsUnstruct)
**********SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLS******VY**********
Disordered Region (DISOPRED)
********GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM********
Disordered Region (DISEMBL)
MPLMAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLVSTRRQ
Disordered Region (DISPRO)
*********GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLVS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPLMAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLVSTRRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q50312	309	DnaJ-like protein MG002 h	yes	no	0.794	0.200	0.476	5e-09
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.743	0.151	0.516	6e-09
O35824	412	DnaJ homolog subfamily A	yes	no	0.846	0.160	0.477	9e-09
Q9QYJ0	412	DnaJ homolog subfamily A	yes	no	0.846	0.160	0.477	9e-09
O60884	412	DnaJ homolog subfamily A	yes	no	0.846	0.160	0.477	9e-09
Q2HJ94	412	DnaJ homolog subfamily A	yes	no	0.846	0.160	0.477	9e-09
Q71ZJ8	376	Chaperone protein DnaJ OS	yes	no	0.730	0.151	0.533	1e-08
C1KVB9	376	Chaperone protein DnaJ OS	yes	no	0.730	0.151	0.533	1e-08
O74752	407	Mitochondrial protein imp	yes	no	0.743	0.142	0.525	2e-08
P0DJM1	377	Chaperone protein DnaJ OS	yes	no	0.730	0.151	0.516	2e-08

>sp|Q50312|DNAJL_MYCPN DnaJ-like protein MG002 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_002 PE=4 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYD 69
          +LY++L +  TA + EIKT Y+ LAK YH D++  G D F +I+NAY  LSD   +A YD
Sbjct: 2  TLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYD 61

Query: 70 MSL 72
            L
Sbjct: 62 AML 64

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAV 67
          LYE+L V+  A   EIK  YR LAK YH DL+    +    F EI+ AYE LSDP+ RA 
Sbjct: 6  LYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 65

Query: 68 YD 69
          YD
Sbjct: 66 YD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 4  MAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDP 62
          MA      LY++L V P A  +E+K  YR LAK YH D + N  D F EI  AYE LS+P
Sbjct: 1  MANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNP 60

Query: 63 KARAVYD 69
          + R +YD
Sbjct: 61 EKRELYD 67

Rattus norvegicus (taxid: 10116)

>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 4  MAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDP 62
          MA      LY++L V P A  +E+K  YR LAK YH D + N  D F EI  AYE LS+P
Sbjct: 1  MANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNP 60

Query: 63 KARAVYD 69
          + R +YD
Sbjct: 61 EKRELYD 67

Co-chaperone of Hsc70.

Mus musculus (taxid: 10090)

>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 4  MAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDP 62
          MA      LY++L V P A  +E+K  YR LAK YH D + N  D F EI  AYE LS+P
Sbjct: 1  MANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNP 60

Query: 63 KARAVYD 69
          + R +YD
Sbjct: 61 EKRELYD 67

Co-chaperone of Hsc70.

Homo sapiens (taxid: 9606)

>sp|Q2HJ94|DNJA2_BOVIN DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 4  MAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDP 62
          MA      LY++L V P A  +E+K  YR LAK YH D + N  D F EI  AYE LS+P
Sbjct: 1  MANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNP 60

Query: 63 KARAVYD 69
          + R +YD
Sbjct: 61 EKRELYD 67

Co-chaperone of Hsc70.

Bos taurus (taxid: 9913)

>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKARAVYD 69
          YEVL V  +A   EIK  YR L+K YH D++   G D  F EI  AYE LSDP+ RA YD
Sbjct: 7  YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=dnaJ PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKARAVYD 69
          YEVL V  +A   EIK  YR L+K YH D++   G D  F EI  AYE LSDP+ RA YD
Sbjct: 7  YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

>sp|O74752|MAS5_SCHPO Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mas5 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYD 69
          LYEVL V+ TA  +E+K  YR LA  YH D + N  D F EI  AYE L+D + RA YD
Sbjct: 7  LYEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAGDKFKEISRAYEILADEEKRATYD 65

Probably involved in mitochondrial protein import.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKARAVYD 69
          YEVL +  +A   EIK  YR L+K YH D++   G D  F EI  AYE LSDP+ RA YD
Sbjct: 7  YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
225462060	148	PREDICTED: chaperone protein dnaJ 11, ch	0.871	0.459	0.690	2e-17
224061637	99	predicted protein [Populus trichocarpa]	0.871	0.686	0.666	6e-17
255579560	168	chaperone protein DNAj, putative [Ricinu	0.871	0.404	0.594	3e-16
297834156	157	DNAJ heat shock N-terminal domain-contai	0.871	0.433	0.623	2e-15
15231204	157	chaperone DnaJ-domain containing protein	0.871	0.433	0.623	5e-15
118487648	171	unknown [Populus trichocarpa]	0.858	0.391	0.576	6e-15
224122088	171	predicted protein [Populus trichocarpa]	0.858	0.391	0.576	6e-15
224093380	142	predicted protein [Populus trichocarpa]	0.794	0.436	0.608	1e-14
356552398	142	PREDICTED: chaperone protein dnaJ 11, ch	0.871	0.478	0.575	3e-14
357460317	161	Chaperone protein dnaJ [Medicago truncat	0.807	0.391	0.594	7e-14

>gi|225462060|ref|XP_002275924.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera] gi|296090000|emb|CBI39819.3| unnamed protein product [Vitis vinifera]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 57/71 (80%), Gaps = 3/71 (4%)

Query: 11  SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAV 67
           SLYEVLRV+ TA  +EIKT YRSLAK+YH D S   S+G +F +IHNAYETLSDP ARAV
Sbjct: 49  SLYEVLRVKQTASPTEIKTAYRSLAKMYHPDASPVDSDGRNFIQIHNAYETLSDPAARAV 108

Query: 68  YDMSLVSTRRQ 78
           YD+SL ST R+
Sbjct: 109 YDLSLGSTGRR 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061637|ref|XP_002300579.1| predicted protein [Populus trichocarpa] gi|222847837|gb|EEE85384.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 52/75 (69%), Gaps = 7/75 (9%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYH-------HDLSSNGWDFTEIHNAYETLSDPK 63
          SLYE+LRV PTA   EIKT YRSLAKVYH        D  S G DF EIHNAYETLSDP 
Sbjct: 1  SLYEILRVNPTASQVEIKTAYRSLAKVYHPDAMLDRDDEPSEGVDFIEIHNAYETLSDPA 60

Query: 64 ARAVYDMSLVSTRRQ 78
          ARAVYDMSL +  R 
Sbjct: 61 ARAVYDMSLSAAARD 75

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579560|ref|XP_002530622.1| chaperone protein DNAj, putative [Ricinus communis] gi|223529832|gb|EEF31765.1| chaperone protein DNAj, putative [Ricinus communis]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 6/74 (8%)

Query: 11  SLYEVLRVEPTAMISEIKTVYRSLAKVYH------HDLSSNGWDFTEIHNAYETLSDPKA 64
           SLYE+LR++ TA + EIKT YRSLAK+YH       D+ ++G DF EIHNAYETLSDP A
Sbjct: 72  SLYEILRIKRTASLMEIKTAYRSLAKLYHPDAAVREDVETDGRDFMEIHNAYETLSDPAA 131

Query: 65  RAVYDMSLVSTRRQ 78
           RA+YD+SL +  R+
Sbjct: 132 RALYDLSLDAASRR 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834156|ref|XP_002884960.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330800|gb|EFH61219.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 11  SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARAVYD 69
           SLYE+L+V  TA ++EIKT YRSLAKVYH D S S+G DF EIH AY TL+DP  RA+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 70  MSLVSTRRQ 78
            +L + RR+
Sbjct: 124 STLRAPRRR 132

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231204|ref|NP_187939.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|9294537|dbj|BAB02800.1| DnaJ-like protein [Arabidopsis thaliana] gi|21592683|gb|AAM64632.1| DnaJ protein, putative [Arabidopsis thaliana] gi|32815917|gb|AAP88343.1| At3g13310 [Arabidopsis thaliana] gi|332641811|gb|AEE75332.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 11  SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARAVYD 69
           SLYE+L+V  TA ++EIKT YRSLAKVYH D S S+G DF EIH AY TL+DP  RA+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 70  MSLVSTRRQ 78
            +L   RR+
Sbjct: 124 STLRVPRRR 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487648|gb|ABK95649.1| unknown [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 52/78 (66%), Gaps = 11/78 (14%)

Query: 11  SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDL-----------SSNGWDFTEIHNAYETL 59
           SLY+VLRV P A   EIK+ YRSLAK+YH D             S+G DF EIH+AYETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 60  SDPKARAVYDMSLVSTRR 77
           SDP ARAVYD+SL +  R
Sbjct: 129 SDPTARAVYDLSLSAAAR 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122088|ref|XP_002330538.1| predicted protein [Populus trichocarpa] gi|222872096|gb|EEF09227.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 52/78 (66%), Gaps = 11/78 (14%)

Query: 11  SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDL-----------SSNGWDFTEIHNAYETL 59
           SLY+VLRV P A   EIK+ YRSLAK+YH D             S+G DF EIH+AYETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 60  SDPKARAVYDMSLVSTRR 77
           SDP ARAVYD+SL +  R
Sbjct: 129 SDPTARAVYDLSLSAAAR 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093380|ref|XP_002309904.1| predicted protein [Populus trichocarpa] gi|222852807|gb|EEE90354.1| predicted protein [Populus trichocarpa]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 52/69 (75%), Gaps = 7/69 (10%)

Query: 11  SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPK 63
           SLYE+L+V+ TA ++EIK  +RSLAKVYH D+S        +G DF EI NAYETLSDP 
Sbjct: 46  SLYEILQVKRTASLTEIKGAFRSLAKVYHPDVSGSDGGEQLDGLDFVEICNAYETLSDPA 105

Query: 64  ARAVYDMSL 72
           ARA+YD+SL
Sbjct: 106 ARAMYDLSL 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552398|ref|XP_003544555.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 5/73 (6%)

Query: 9   GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS-----SNGWDFTEIHNAYETLSDPK 63
             SLYEVLR++  A   EIK+ YR+LAKVYH D +     S+  DF EIH+AYETLSDP 
Sbjct: 38  AASLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSALRRSESDERDFIEIHDAYETLSDPS 97

Query: 64  ARAVYDMSLVSTR 76
           ARA+YD+SL++ R
Sbjct: 98  ARALYDLSLMAAR 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460317|ref|XP_003600440.1| Chaperone protein dnaJ [Medicago truncatula] gi|358349362|ref|XP_003638707.1| Chaperone protein dnaJ [Medicago truncatula] gi|355489488|gb|AES70691.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504642|gb|AES85845.1| Chaperone protein dnaJ [Medicago truncatula] gi|388517361|gb|AFK46742.1| unknown [Medicago truncatula]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 6/69 (8%)

Query: 11  SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS------NGWDFTEIHNAYETLSDPKA 64
           SLYEVLR+ P A   EIK+ YRSLAKVYH D ++      N  DF EI NAYETLSDP +
Sbjct: 59  SLYEVLRLNPGASAMEIKSAYRSLAKVYHPDAAARRLQECNDGDFIEIRNAYETLSDPSS 118

Query: 65  RAVYDMSLV 73
           R +YD+SL+
Sbjct: 119 RQIYDLSLM 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.871	0.433	0.623	6.7e-17
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.846	0.412	0.452	1.4e-09
FB|FBgn0032474	389	DnaJ-H "DnaJ homolog" [Drosoph	0.756	0.151	0.533	1.8e-09
UNIPROTKB|F1NLH8	402	DNAJA4 "Uncharacterized protei	0.730	0.141	0.534	5.3e-09
UNIPROTKB|C9JDE6	211	DNAJA4 "DnaJ homolog subfamily	0.730	0.270	0.517	5.9e-09
UNIPROTKB|F5H170	219	DNAJA4 "DnaJ homolog subfamily	0.730	0.260	0.517	6.8e-09
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.858	0.416	0.432	7.6e-09
UNIPROTKB|Q5ZJV3	397	DNAJA1 "Uncharacterized protei	0.730	0.143	0.517	8.6e-09
POMBASE|SPBC1734.11	407	mas5 "DNAJ domain protein Mas5	0.743	0.142	0.525	9e-09
UNIPROTKB|Q2HJ94	412	DNAJA2 "DnaJ homolog subfamily	0.743	0.140	0.508	9.2e-09

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/69 (62%), Positives = 52/69 (75%)

Query:    11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARAVYD 69
             SLYE+L+V  TA ++EIKT YRSLAKVYH D S S+G DF EIH AY TL+DP  RA+YD
Sbjct:    64 SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query:    70 MSLVSTRRQ 78
              +L   RR+
Sbjct:   124 STLRVPRRR 132

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query:    11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD------FTEIHNAYETLSDPKA 64
             SLYE+L +   +   EIK+ YR LA++ H D++ N  D      F +IH AY TLSDP+ 
Sbjct:    68 SLYEILEIPVGSTSQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEK 127

Query:    65 RAVYDM-SLVSTR 76
             RAVYD  +L+ +R
Sbjct:   128 RAVYDRRTLLRSR 140

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

FB|FBgn0032474 DnaJ-H "DnaJ homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 32/60 (53%), Positives = 39/60 (65%)

Query:    11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYD 69
             +LY+VLRV P A   EIK  YR LAK +H D + +  D F EI  AYE LSDP+ R +YD
Sbjct:     5 NLYDVLRVAPDATDEEIKKNYRKLAKEFHPDKNPDAGDKFKEISFAYEVLSDPEKRRIYD 64

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|F1NLH8 DNAJA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 31/58 (53%), Positives = 37/58 (63%)

Query:    13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARAVYD 69
             Y++L+V+PTA   EIK  YR LA  YH D + S G  F  I  AYE LSDPK R +YD
Sbjct:    12 YDILQVKPTASSEEIKRAYRKLALKYHPDKNPSEGERFKLISQAYEVLSDPKKRDLYD 69

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|C9JDE6 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/58 (51%), Positives = 36/58 (62%)

Query:    13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWDFTEIHNAYETLSDPKARAVYD 69
             Y++L V+P+A   EIK  YR LA  YH D + + G  F  I  AYE LSDPK R VYD
Sbjct:     8 YDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYD 65

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F5H170 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 30/58 (51%), Positives = 36/58 (62%)

Query:    13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWDFTEIHNAYETLSDPKARAVYD 69
             Y++L V+P+A   EIK  YR LA  YH D + + G  F  I  AYE LSDPK R VYD
Sbjct:     8 YDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYD 65

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query:    11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDL-------SSNGWDFTEIHNAYETLSDPK 63
             SLY+VL V   A   +IK+ YR LA++ H D+       SS+  +F +IH AY TLSDP+
Sbjct:    65 SLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPE 124

Query:    64 ARAVYDMSLVSTRR 77
              R+VYD  ++   R
Sbjct:   125 KRSVYDRRMLRRSR 138

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q5ZJV3 DNAJA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 139 (54.0 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 30/58 (51%), Positives = 35/58 (60%)

Query:    13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWDFTEIHNAYETLSDPKARAVYD 69
             Y+VL V P A   E+K  YR LA  YH D + N G  F +I  AYE LSDPK R +YD
Sbjct:     8 YDVLGVSPNASAEELKKAYRKLALKYHPDKNHNEGEKFKQISQAYEVLSDPKKRDLYD 65

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0030317 "sperm motility" evidence=ISS

GO:0030521 "androgen receptor signaling pathway" evidence=ISS

POMBASE|SPBC1734.11 mas5 "DNAJ domain protein Mas5 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 139 (54.0 bits), Expect = 9.0e-09, P = 9.0e-09
 Identities = 31/59 (52%), Positives = 37/59 (62%)

Query:    12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYD 69
             LYEVL V+ TA  +E+K  YR LA  YH D + N  D F EI  AYE L+D + RA YD
Sbjct:     7 LYEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAGDKFKEISRAYEILADEEKRATYD 65

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=ISM

GO:0034605 "cellular response to heat" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q2HJ94 DNAJA2 "DnaJ homolog subfamily A member 2" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 30/59 (50%), Positives = 38/59 (64%)

Query:    12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYD 69
             LY++L V P A  +E+K  YR LAK YH D + N  D F EI  AYE LS+P+ R +YD
Sbjct:     9 LYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYD 67

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033470001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (148 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.498
	GSVIVG00022013001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)			•						0.497
	GSVIVG00022731001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)			•						0.495
	GSVIVG00006687001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa)			•						0.495
	GSVIVG00001482001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)			•						0.495
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)			•						0.494
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.494
	GSVIVG00019978001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (574 aa)			•						0.490
	GSVIVG00024357001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (652 aa)			•						0.489
	GSVIVG00018506001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)			•						0.489

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	78
pfam00226	63	pfam00226, DnaJ, DnaJ domain	4e-16
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	6e-16
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-15
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-14
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-13
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-13
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-13
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	4e-13
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	6e-13
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-12
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-12
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	4e-12
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	5e-12
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	1e-11
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-11
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-11
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-11
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	8e-11
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	8e-11
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	9e-11
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	3e-10
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	3e-10
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-10
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-10
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	4e-10
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	6e-10
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-09
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-09
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-09
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-09
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	5e-09
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	9e-09
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	5e-08
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-07
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	3e-06
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	3e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.002
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	0.002

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 65.2 bits (160), Expect = 4e-16
 Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAV 67
           YE+L V   A   EIK  YR LA  YH D +         F EI+ AYE LSDP+ RA+
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 68 YD 69
          YD
Sbjct: 62 YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 69.6 bits (171), Expect = 6e-16
 Identities = 32/69 (46%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD------FTEIHNAYETLSD 61
               YE+L V   A   EIK  YR LAK YH D   N  D      F EI+ AYE LSD
Sbjct: 2  AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPD--RNPGDKEAEEKFKEINEAYEVLSD 59

Query: 62 PKARAVYDM 70
          P+ RA YD 
Sbjct: 60 PEKRAAYDQ 68

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 68.8 bits (169), Expect = 1e-15
 Identities = 30/61 (49%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD---FTEIHNAYETLSDPKARAVYD 69
          YE+L V   A   EIK  YR LAK YH D + +      F EI+ AYE LSDP+ RA YD
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62

Query: 70 M 70
           
Sbjct: 63 Q 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 65.6 bits (160), Expect = 2e-14
 Identities = 31/62 (50%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAV 67
           YE+L V+  A   EIK  YR LAK YH DL+    +    F EI+ AYE LSDP+ RA 
Sbjct: 7  YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66

Query: 68 YD 69
          YD
Sbjct: 67 YD 68

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 31/60 (51%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKARAVYD 69
          YEVL V  +A   EIK  YR L+K YH D++   G D  F EI  AYE LSD + RA YD
Sbjct: 7  YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66

Length = 376

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 63.2 bits (154), Expect = 1e-13
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGW---DFTEIHNAYETLSDPKARAVYD 69
          YE+L V   A   EIK  YR LA+ YH D + N      F EI+ AY+ LSDP+ R +YD
Sbjct: 6  YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65

Query: 70 M 70
           
Sbjct: 66 Q 66

Length = 382

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 62.5 bits (153), Expect = 2e-13
 Identities = 32/63 (50%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD------FTEIHNAYETLSDPKARA 66
          YEVL V   A   EIK  YR LA  YH D   N  D      F EI  AYE LSDP+ RA
Sbjct: 7  YEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 67 VYD 69
           YD
Sbjct: 65 AYD 67

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 62.0 bits (151), Expect = 4e-13
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKARAVY 68
           Y+ L V   A   EIK  YR L+K YH D++   G +  + E+  AYETLSDP+ RA Y
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAY 65

Query: 69 D 69
          D
Sbjct: 66 D 66

Length = 380

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 61.4 bits (149), Expect = 6e-13
 Identities = 28/58 (48%), Positives = 33/58 (56%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69
          LYEVL +      SEIK  YR LA  +H D   +   F EI  AYE LSDP+ R +YD
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 55.7 bits (135), Expect = 2e-12
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPK 63
            YE+L V   A + EIK  YR LA  YH D +    +     F EI+ AYE LSDP+
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKA 64
          M    YE+L V   A   E+K  YR LA+ YH D++   G +  F EI+ AYE LSDP+ 
Sbjct: 1  MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPET 60

Query: 65 RAVYD 69
          RA YD
Sbjct: 61 RARYD 65

Length = 374

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG---WDFTEIHNAYETLSDPKARAVYD 69
          Y ++ V+PT  +  IKT YR LA+ YH D+S        F E+  A+E LSD + RA YD
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66

Length = 306

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 54.5 bits (132), Expect = 5e-12
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSD 61
          Y++L V P A   EIK  YR LA  YH D + +  +    F EI+ AYE LSD
Sbjct: 3  YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 57.9 bits (140), Expect = 1e-11
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          Y +L V  TA   EIK  YR LA  YH D +    +    F E+  AYE LSD + R  Y
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 69 D 69
          D
Sbjct: 64 D 64

Length = 391

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YEVL ++  A   EIK  +R LAK YH D  +   D    F EI+ A + LS+PK RA Y
Sbjct: 5  YEVLGIDRDADEQEIKKAFRKLAKKYHPD-RNKAPDAASIFAEINEANDVLSNPKKRANY 63

Query: 69 D 69
          D
Sbjct: 64 D 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS--NGWD-FTEIHNAYETLSDPKARAVYD 69
          YEVL V+  A + E+K  YR LA+ YH D++   +  D F E+  AY+TLSDP+ +A YD
Sbjct: 7  YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYD 66

Length = 371

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 56.2 bits (136), Expect = 4e-11
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDP 62
          M    Y +L V   A  +EIK  YR LA+  H D+  N  +     F EI  AYE LSDP
Sbjct: 1  MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDV--NPDEEAQEKFKEISVAYEVLSDP 58

Query: 63 KARAVYDM 70
          + R + D+
Sbjct: 59 EKRRIVDL 66

Length = 378

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 55.6 bits (134), Expect = 8e-11
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YEVL +E  A   EIK  +R LA  YH D +    +    F EI+ AY+ LSDP+ +A Y
Sbjct: 7  YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQY 66

Query: 69 D 69
          D
Sbjct: 67 D 67

Length = 380

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 55.6 bits (134), Expect = 8e-11
 Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD------FTEIHNAYETLSDPKARA 66
          Y+VL V   A  +EIK  YR LA+ YH D  +N  D      F EI  AY+ LSD K R 
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPD--ANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 67 VYD 69
           YD
Sbjct: 70 EYD 72

Length = 389

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 55.3 bits (133), Expect = 9e-11
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDP 62
          M    Y++L V+  A   +IK  +R LAK +H DL           F EI  AYE LSDP
Sbjct: 1  MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60

Query: 63 KARAVYD 69
          + R  YD
Sbjct: 61 QKRRQYD 67

Length = 365

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 53.7 bits (128), Expect = 3e-10
 Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG-----WDFTEIHNAYETLSDPKAR 65
            YE+L V P A + EIK  YR LA  YH D +          F EI+ AYE LSDP+ R
Sbjct: 7  DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66

Query: 66 AVYDMSL 72
          A YD   
Sbjct: 67 AEYDKIG 73

Length = 237

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG-----WDFTEIHNAYETLSDPKARAV 67
          YE+L V   A   EIK  Y+ L K +H D            F EI  AYE LSDP+ RA+
Sbjct: 7  YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66

Query: 68 YD 69
          YD
Sbjct: 67 YD 68

Length = 369

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YE+L V   A   EIK  YR LA  YH D +    +    F E   AYE LSDPK R +Y
Sbjct: 7  YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 69 D 69
          D
Sbjct: 67 D 67

Length = 366

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 53.7 bits (129), Expect = 3e-10
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YEVL V  TA + EIK  YR  A  YH D +    +    F E   AY+ LSDP  R+ Y
Sbjct: 8  YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRY 67

Query: 69 D 69
          D
Sbjct: 68 D 68

Length = 386

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN---GWDFTEIHNAYETLSDPKARAVYD 69
          YEVL V+  A   EIK  YR LA+ YH D+S        F EI  AY  LSD + R  YD
Sbjct: 8  YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYD 67

Length = 378

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 53.0 bits (127), Expect = 6e-10
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN---GWDFTEIHNAYETLSDPKARAVYD 69
          YE+L V  TA   EIK+ YR LA  YH D +        F +I+ AY  LSD + RA YD
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64

Length = 371

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDL--SSNGWD-FTEIHNAYETLSDPKARAVYD 69
          YEVL V  TA   EI+  YR LAK YH DL  S +  D   EI+ A + L D   R  YD
Sbjct: 7  YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG---WDFTEIHNAYETLSDPKA 64
          M    Y++L V  TA  +++K  Y  LAK YH D +        F EI+ AY+ L D + 
Sbjct: 1  MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK 60

Query: 65 RAVYD 69
          RA YD
Sbjct: 61 RAAYD 65

Length = 372

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPK 63
          M    YEVL V  +A   EIK  YR LA  YH D + +  +    F E++ AYE LS+  
Sbjct: 1  MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDD 60

Query: 64 ARAVYD 69
           R  YD
Sbjct: 61 KRRRYD 66

Length = 397

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG---WDFTEIHNAYETLSDPKARAVYD 69
          YE+L +   A + +IK  YR LA  YH D +        F EI  AY  LSD + RA YD
Sbjct: 8  YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYD 67

Length = 377

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 50.4 bits (120), Expect = 5e-09
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARA 66
          S Y++L V  +A   EIK+ YR LA  YH D +    +    F E   AYE L DPK R 
Sbjct: 5  SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64

Query: 67 VYD 69
           YD
Sbjct: 65 AYD 67

Length = 372

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 49.7 bits (119), Expect = 9e-09
 Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YEVL V   A   EIK  YR LA  YH D + +  +    F E   AYE L D + RA Y
Sbjct: 7  YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARY 66

Query: 69 D 69
          D
Sbjct: 67 D 67

Length = 373

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGW---DFTEIHNAYETLSDPKARAVYD 69
          Y +L V   A   EIK  ++ LA+ YH D++ +      F EI+ AY  LSDP+ R +YD
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66

Length = 291

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARA 66
          S YE+L VE  +    IK  YR LA  YH D ++   +    F  I+ AY  LSD K RA
Sbjct: 4  SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 67 VYD 69
          +YD
Sbjct: 64 LYD 66

Length = 369

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPK 63
          M    YE+L +   A   EIK  YR +A  YH D +    +    F E   AYE L D  
Sbjct: 1  MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN 60

Query: 64 ARAVYD 69
           RA YD
Sbjct: 61 KRAQYD 66

Length = 365

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 12/71 (16%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD------FTEIHNAYETLSDPKARA 66
          Y+ L V   A   EIK  YR LA+  H D  +N  D      F  +  A++ LSDP  R 
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPD--ANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 67 VYDMSLVSTRR 77
           YD     TRR
Sbjct: 70 EYD----ETRR 76

Length = 392

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 31 YRSLAKVYHHDLSSNGWDF-------TEIHNAYETLSDPKARAVYDMSL 72
          YR L   YH D S    +        T ++ AY TL DP  RA Y + L
Sbjct: 12 YRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKL 60

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 16  LRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD------FTEIHNAYETLSDPKARAVYD 69
            R +      +I   ++     YH D ++ G +      F  I  A E L D K R  YD
Sbjct: 54  YRTKAIP--PQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYD 111

Length = 379

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 13  YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD---------FTEIHNAYETLSDPK 63
           YE+L ++      +IK  YR L+  +H D +    +         +  I  AY  L+D K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 64  ARAVY 68
            R  Y
Sbjct: 161 RRENY 165

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.94
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.92
PRK14288	369	chaperone protein DnaJ; Provisional	99.9
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.89
PRK14296	372	chaperone protein DnaJ; Provisional	99.88
PRK14279	392	chaperone protein DnaJ; Provisional	99.88
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.88
PRK14286	372	chaperone protein DnaJ; Provisional	99.87
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.86
PRK14287	371	chaperone protein DnaJ; Provisional	99.86
PRK14295	389	chaperone protein DnaJ; Provisional	99.86
PRK14282	369	chaperone protein DnaJ; Provisional	99.86
PRK14285	365	chaperone protein DnaJ; Provisional	99.85
PRK14299	291	chaperone protein DnaJ; Provisional	99.85
PRK14276	380	chaperone protein DnaJ; Provisional	99.85
PRK14278	378	chaperone protein DnaJ; Provisional	99.85
PRK14291	382	chaperone protein DnaJ; Provisional	99.85
PRK14298	377	chaperone protein DnaJ; Provisional	99.85
PRK14283	378	chaperone protein DnaJ; Provisional	99.85
PRK14277	386	chaperone protein DnaJ; Provisional	99.85
PRK14294	366	chaperone protein DnaJ; Provisional	99.84
PRK14280	376	chaperone protein DnaJ; Provisional	99.84
PRK14301	373	chaperone protein DnaJ; Provisional	99.84
PRK14297	380	chaperone protein DnaJ; Provisional	99.84
PRK14284	391	chaperone protein DnaJ; Provisional	99.84
PRK14281	397	chaperone protein DnaJ; Provisional	99.84
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK10767	371	chaperone protein DnaJ; Provisional	99.83
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK14300	372	chaperone protein DnaJ; Provisional	99.83
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.82
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.82
PRK14293	374	chaperone protein DnaJ; Provisional	99.82
PRK14290	365	chaperone protein DnaJ; Provisional	99.82
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.82
PRK14289	386	chaperone protein DnaJ; Provisional	99.81
PRK14292	371	chaperone protein DnaJ; Provisional	99.81
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.81
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.81
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.79
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.79
PHA03102	153	Small T antigen; Reviewed	99.77
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.77
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.73
PRK05014	171	hscB co-chaperone HscB; Provisional	99.73
PRK01356	166	hscB co-chaperone HscB; Provisional	99.73
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.72
PRK03578	176	hscB co-chaperone HscB; Provisional	99.7
PRK00294	173	hscB co-chaperone HscB; Provisional	99.69
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.68
PTZ00100	116	DnaJ chaperone protein; Provisional	99.66
PHA02624	647	large T antigen; Provisional	99.6
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.6
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PRK01773	173	hscB co-chaperone HscB; Provisional	99.52
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.47
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.43
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.36
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.31
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.28
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.17
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	99.12
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.94
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.6
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.4
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.83
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.53
KOG0431	453	consensus Auxilin-like protein and related protein	97.49
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.44
PF13446	62	RPT: A repeated domain in UCH-protein	95.47
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	95.35
KOG3442	132	consensus Uncharacterized conserved protein [Funct	93.41
KOG0724	335	consensus Zuotin and related molecular chaperones	92.15
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	87.05
COG5552	88	Uncharacterized conserved protein [Function unknow	84.43

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.5e-27  Score=159.03  Aligned_cols=67  Identities=45%  Similarity=0.599  Sum_probs=62.7

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      +..|||+||||+++|+.++||+|||+|+++||||+++    ++++|++|++||+||+||.+|+.||++...
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~   72 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHA   72 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcc
Confidence            4679999999999999999999999999999999995    789999999999999999999999987644

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.5e-25  Score=149.19  Aligned_cols=70  Identities=41%  Similarity=0.527  Sum_probs=64.5

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961            6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVST   75 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~   75 (78)
                      .....|||+||||+++|+..+||+|||+|++++|||+++    +.+.|+.|+.||+||+||.+|+.||+.....
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEeg   85 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEG   85 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhh
Confidence            345689999999999999999999999999999999995    6899999999999999999999999987544

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=9.6e-24  Score=143.52  Aligned_cols=64  Identities=42%  Similarity=0.518  Sum_probs=60.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++    +++.|++|++||+||+||.+|+.||+..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G   69 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYG   69 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence            479999999999999999999999999999999984    5689999999999999999999999864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.89  E-value=3.4e-23  Score=142.77  Aligned_cols=65  Identities=43%  Similarity=0.577  Sum_probs=61.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ..|||+||||+++|+.++||+|||++++++|||++++.+.|++|++||+||+||.+|+.||+...
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~   91 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGE   91 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence            57999999999999999999999999999999999888999999999999999999999998643

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=7e-23  Score=139.42  Aligned_cols=64  Identities=41%  Similarity=0.494  Sum_probs=60.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++   +.+.|++|++||+||+||.+|+.||+..
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G   69 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFG   69 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence            469999999999999999999999999999999973   6789999999999999999999999854

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=9.1e-23  Score=139.62  Aligned_cols=65  Identities=34%  Similarity=0.489  Sum_probs=60.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      +..|||+||||+++|+.++||+|||++++++|||+++    +.+.|++|++||+||+||.+|+.||+..
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G   75 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR   75 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence            4579999999999999999999999999999999984    5689999999999999999999999864

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.5e-22  Score=135.63  Aligned_cols=67  Identities=45%  Similarity=0.665  Sum_probs=62.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-NGWDFTEIHNAYETLSDPKARAVYDMSLVST   75 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~   75 (78)
                      .+.+|+||||+++|+.++||+|||++++++|||+++ +.++|++|..||+||+||++|..||+..+..
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~   70 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEG   70 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            568999999999999999999999999999999996 6799999999999999999999999987543

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=4.1e-22  Score=135.68  Aligned_cols=64  Identities=42%  Similarity=0.573  Sum_probs=59.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++    +.+.|++|++||+||+||.+|+.||+..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G   70 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG   70 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence            369999999999999999999999999999999974    5689999999999999999999999864

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.86  E-value=4.8e-22  Score=105.47  Aligned_cols=59  Identities=47%  Similarity=0.718  Sum_probs=55.5

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHH
Q 034961           11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYD   69 (78)
Q Consensus        11 d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd   69 (78)
                      |||+||||+++++.++|+++|+++++.+|||+.+     +...|..|++||++|++|.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999963     3479999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1.1e-21  Score=133.61  Aligned_cols=64  Identities=42%  Similarity=0.671  Sum_probs=59.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||++.   +++.|+.|++||++|+||.+|+.||+..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G   69 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFG   69 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhC
Confidence            369999999999999999999999999999999983   5688999999999999999999999864

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1.1e-21  Score=134.14  Aligned_cols=63  Identities=43%  Similarity=0.613  Sum_probs=59.5

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDM   70 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~   70 (78)
                      +..|||+||||+++|+.++||+|||++++++|||+++    +++.|+.|++||+||+||.+|+.||+
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            3579999999999999999999999999999999973    56899999999999999999999998

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1.2e-21  Score=133.18  Aligned_cols=64  Identities=42%  Similarity=0.607  Sum_probs=59.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++     +.+.|++|++||+||+||.+|+.||+..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g   71 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG   71 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence            469999999999999999999999999999999974     4679999999999999999999999854

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.3e-21  Score=132.97  Aligned_cols=64  Identities=38%  Similarity=0.463  Sum_probs=59.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++    +.+.|++|++||+||+||.+|..||+..
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g   69 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFG   69 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcC
Confidence            369999999999999999999999999999999984    5678999999999999999999999854

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.8e-21  Score=128.96  Aligned_cols=65  Identities=37%  Similarity=0.576  Sum_probs=60.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++   +.+.|+.|++||++|+||.+|+.||+...
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            469999999999999999999999999999999984   57899999999999999999999998543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.8e-21  Score=132.76  Aligned_cols=64  Identities=42%  Similarity=0.638  Sum_probs=59.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++   +.+.|+.|++||+||+||.+|+.||+..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G   69 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYG   69 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence            469999999999999999999999999999999974   5789999999999999999999999854

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.7e-21  Score=132.90  Aligned_cols=64  Identities=39%  Similarity=0.555  Sum_probs=59.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++   +.+.|+.|++||+||+||.+|+.||+..
T Consensus         2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G   68 (378)
T PRK14278          2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGG   68 (378)
T ss_pred             CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence            369999999999999999999999999999999984   5678999999999999999999999753

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.1e-21  Score=132.54  Aligned_cols=65  Identities=42%  Similarity=0.625  Sum_probs=60.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++   +.+.|+.|++||+||+||.+|+.||+...
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~   69 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGH   69 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence            469999999999999999999999999999999984   57899999999999999999999998653

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.9e-21  Score=132.60  Aligned_cols=64  Identities=39%  Similarity=0.552  Sum_probs=59.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++   +.+.|++|++||++|+||.+|+.||+..
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G   70 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFG   70 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence            369999999999999999999999999999999984   5689999999999999999999999854

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.6e-21  Score=131.93  Aligned_cols=64  Identities=44%  Similarity=0.576  Sum_probs=60.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+||+++++++|||+++   +.+.|++|++||++|+||.+|+.||+..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G   70 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFG   70 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence            569999999999999999999999999999999973   6789999999999999999999999854

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=3.3e-21  Score=131.71  Aligned_cols=64  Identities=48%  Similarity=0.682  Sum_probs=59.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++    +++.|++|++||+||+||.+|+.||+..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G   71 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG   71 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence            369999999999999999999999999999999974    5678999999999999999999999854

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.9e-21  Score=130.63  Aligned_cols=64  Identities=44%  Similarity=0.565  Sum_probs=60.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++    +.+.|+.|++||+||+||.+|+.||+..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G   70 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG   70 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence            469999999999999999999999999999999984    5688999999999999999999999864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4e-21  Score=130.96  Aligned_cols=63  Identities=46%  Similarity=0.630  Sum_probs=59.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      .|||+||||+++|+.++||+||+++++++|||+++   +.+.|++|++||+||+||.+|+.||+..
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G   69 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFG   69 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence            69999999999999999999999999999999973   6789999999999999999999999854

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.1e-21  Score=131.40  Aligned_cols=64  Identities=42%  Similarity=0.519  Sum_probs=59.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++    +++.|++|++||+||+||.+|+.||+..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g   70 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFG   70 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence            469999999999999999999999999999999974    4679999999999999999999999854

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.7e-21  Score=131.22  Aligned_cols=64  Identities=42%  Similarity=0.574  Sum_probs=59.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++    +++.|+.|++||+||+||.+|+.||+..
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G   70 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFG   70 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence            369999999999999999999999999999999984    5689999999999999999999999853

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=6.8e-21  Score=130.37  Aligned_cols=63  Identities=41%  Similarity=0.540  Sum_probs=59.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      .|||+||||+++|+.++||+|||++++++|||+++    +.+.|+.|++||++|+||.+|+.||+..
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G   67 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG   67 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            48999999999999999999999999999999984    5688999999999999999999999864

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=6e-21  Score=130.85  Aligned_cols=65  Identities=40%  Similarity=0.503  Sum_probs=60.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++    +.+.|+.|++||++|+||.+|+.||+...
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~   70 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH   70 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            369999999999999999999999999999999984    46889999999999999999999998643

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.1e-20  Score=125.27  Aligned_cols=65  Identities=43%  Similarity=0.641  Sum_probs=61.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .|||+||||+++|+..+||+||+++++++|||.+   .+.+.|++|.+||+||+|+++|..||..+..
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~  110 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE  110 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence            3999999999999999999999999999999998   4789999999999999999999999998765

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=8.6e-21  Score=129.06  Aligned_cols=64  Identities=47%  Similarity=0.619  Sum_probs=59.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+||+++++++|||+++    +.+.|+.|++||++|+||.+|..||+..
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g   70 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG   70 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence            469999999999999999999999999999999974    4678999999999999999999999854

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=8.7e-21  Score=130.55  Aligned_cols=70  Identities=44%  Similarity=0.527  Sum_probs=63.6

Q ss_pred             CCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            5 APGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         5 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .+.+-..||+||||.++++..+||++||++++++|||+++     +.+.|+.|+.||+|||||..|++||.-..+
T Consensus         3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq   77 (508)
T KOG0717|consen    3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ   77 (508)
T ss_pred             CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence            4556679999999999999999999999999999999974     689999999999999999999999975543

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.3e-20  Score=125.00  Aligned_cols=68  Identities=37%  Similarity=0.510  Sum_probs=63.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHHhh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVSTR   76 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~~   76 (78)
                      +.|||+||||+++++..+|+++|+..++.+|||+++    +.+.|+.|.+||+||+|+..|..||+.+....
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~   75 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS   75 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence            679999999999999999999999999999999995    67889999999999999999999999887643

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.5e-20  Score=128.05  Aligned_cols=64  Identities=38%  Similarity=0.556  Sum_probs=59.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+||+++++++|||+++   +++.|++|++||++|+|+.+|+.||+..
T Consensus         2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G   68 (372)
T PRK14300          2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFG   68 (372)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence            369999999999999999999999999999999873   5789999999999999999999999853

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.1e-20  Score=121.79  Aligned_cols=65  Identities=45%  Similarity=0.567  Sum_probs=60.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ..|+|+|||++++++.++||++||++++++|||+++    +...|.+|++||.||+||.+|..||....
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~   98 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE   98 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence            357999999999999999999999999999999984    56899999999999999999999998853

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.82  E-value=2.8e-20  Score=125.83  Aligned_cols=62  Identities=48%  Similarity=0.657  Sum_probs=58.5

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961           11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus        11 d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      |||+||||+++|+.++||+||+++++++|||+++   +.+.|+.|++||++|+|+.+|..||+..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g   65 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFG   65 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence            7999999999999999999999999999999984   5689999999999999999999999854

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=3.8e-20  Score=126.08  Aligned_cols=64  Identities=44%  Similarity=0.636  Sum_probs=59.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++++.++|++||+++++++|||+++   +.+.|+.|++||++|+||.+|+.||...
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g   68 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFG   68 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence            369999999999999999999999999999999973   6789999999999999999999999854

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=3e-20  Score=126.28  Aligned_cols=62  Identities=42%  Similarity=0.672  Sum_probs=58.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMS   71 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~   71 (78)
                      .|||+||||+++|+.++|++|||++++++|||+++     +.+.|+.|++||++|+||.+|+.||+.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~   69 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQT   69 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhccc
Confidence            69999999999999999999999999999999974     458899999999999999999999974

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.82  E-value=4.8e-20  Score=122.87  Aligned_cols=63  Identities=41%  Similarity=0.643  Sum_probs=59.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      .|||+||||+++++.++||+|||++++++|||++.   +.+.|++|++||++|+||.+|+.||+..
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            69999999999999999999999999999999873   6789999999999999999999999854

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.5e-20  Score=125.68  Aligned_cols=64  Identities=42%  Similarity=0.567  Sum_probs=59.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++|++||+++++++|||+++    +.+.|+.|++||++|+||.+|+.||+..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G   71 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG   71 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence            469999999999999999999999999999999984    5688999999999999999999999854

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.5e-20  Score=125.54  Aligned_cols=63  Identities=43%  Similarity=0.559  Sum_probs=59.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      .|||+||||+++|+.++||+||+++++++|||+++   +.+.|+.|++||++|+||.+|+.||+..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G   67 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFG   67 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence            48999999999999999999999999999999984   6789999999999999999999999853

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=5e-20  Score=118.22  Aligned_cols=70  Identities=37%  Similarity=0.451  Sum_probs=63.4

Q ss_pred             CCCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC------ccHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            3 LMAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS------SNGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         3 ~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~------~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      +--.+...|+|+||||.++|+..+|++||+++++.+|||++      .+...|+.|+.||.||+|..+|+.||...
T Consensus         7 ~~~~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG   82 (264)
T KOG0719|consen    7 CTGSFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETG   82 (264)
T ss_pred             ccccccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence            33456677999999999999999999999999999999998      36788999999999999999999999754

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.81  E-value=7.5e-20  Score=95.68  Aligned_cols=54  Identities=46%  Similarity=0.688  Sum_probs=50.9

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChh
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPK   63 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~   63 (78)
                      .|||+||||+++++.++|+++|+++++.+|||+++     +.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999999999999999986     6789999999999999985

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=6.2e-20  Score=126.70  Aligned_cols=67  Identities=37%  Similarity=0.554  Sum_probs=61.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVYDMSLVST   75 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~   75 (78)
                      +.+||.+|+|+++|+.++|++|||++++.+|||+..       +++.|++|+.||+||+||.+|+.||....++
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG   81 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG   81 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence            348999999999999999999999999999999972       6788999999999999999999999876654

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.79  E-value=1.5e-19  Score=132.89  Aligned_cols=66  Identities=27%  Similarity=0.355  Sum_probs=61.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .++||+||||+++|+..+||+|||++++++|||+++   +...|+.|++||+||+||.+|+.||+....
T Consensus       572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~  640 (1136)
T PTZ00341        572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD  640 (1136)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence            579999999999999999999999999999999985   578899999999999999999999986543

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.79  E-value=3.1e-19  Score=91.78  Aligned_cols=51  Identities=47%  Similarity=0.683  Sum_probs=48.4

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCC
Q 034961           11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSD   61 (78)
Q Consensus        11 d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d   61 (78)
                      |||+||||+++++.++|+++|+++++.+|||+.+    +...|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999986    57899999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PHA03102 Small T antigen; Reviewed

Probab=99.77  E-value=4.5e-19  Score=108.32  Aligned_cols=65  Identities=12%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            9 GGSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ...+|+||||+++|  +..+||+||+++++.+|||++++.+.|+.|++||++|+|+..|..||....
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~   70 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEE   70 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCC
Confidence            34689999999999  999999999999999999999999999999999999999999999997643

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=8.8e-19  Score=111.36  Aligned_cols=65  Identities=34%  Similarity=0.455  Sum_probs=60.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS----SNGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~----~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ..|+|+||||+++++..+||+|||+++.++|||+.    ++++.|..|.+||+.|+|+..|..|+....
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~  166 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN  166 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence            35999999999999999999999999999999995    578889999999999999999999987653

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=9.8e-18  Score=104.47  Aligned_cols=64  Identities=47%  Similarity=0.639  Sum_probs=59.8

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMS   71 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~   71 (78)
                      ...++|+||||+++++..+|+++|+++++++|||+++     +.+.|..|++||++|+|+..|..||+.
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            4569999999999999999999999999999999984     458999999999999999999999985

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.73  E-value=1.2e-17  Score=103.76  Aligned_cols=65  Identities=23%  Similarity=0.345  Sum_probs=57.2

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961           10 GSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus        10 ~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .|||+||||++.  ++..+|+++|+++++.+|||+..         +...+..|++||++|+||.+|+.|+-.+.+
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g   76 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG   76 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcC
Confidence            489999999996  57899999999999999999962         245789999999999999999999876653

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.73  E-value=1.7e-17  Score=102.68  Aligned_cols=64  Identities=25%  Similarity=0.349  Sum_probs=56.4

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961           10 GSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSSN-------GWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus        10 ~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      .|||++|||++.  ++..+|+++|+++++++|||+...       ...+..|++||+||+||.+|+.|...+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~   74 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ   74 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            489999999997  579999999999999999999732       2347899999999999999999987764

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.72  E-value=1.2e-17  Score=120.85  Aligned_cols=64  Identities=42%  Similarity=0.546  Sum_probs=59.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      .|||+||||+++|+..+||++||++++++|||+++   +...|+.|++||++|+||.+|+.||....
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~   68 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH   68 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence            58999999999999999999999999999999984   45689999999999999999999998653

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.70  E-value=8e-17  Score=100.49  Aligned_cols=66  Identities=23%  Similarity=0.283  Sum_probs=57.3

Q ss_pred             ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            9 GGSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         9 ~~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      ..|||+||||++.  ++..+|+++|+++++.+|||+..         +.+.+..|++||++|+||.+|+.|.-.+.+
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G   81 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG   81 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence            4799999999996  57899999999999999999973         234468999999999999999999976653

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.69  E-value=9e-17  Score=100.02  Aligned_cols=67  Identities=25%  Similarity=0.377  Sum_probs=59.2

Q ss_pred             CccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            8 MGGSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      ...|||++||+++..  +..+|+++|+++++.+|||+..         +...+..|++||++|+||.+|+.|+-.+.+
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g   79 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG   79 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            467999999999985  6799999999999999999973         245689999999999999999999987754

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=4.9e-17  Score=112.11  Aligned_cols=66  Identities=24%  Similarity=0.348  Sum_probs=62.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      ..|+|.+|||+.+++.++||+.||+++..+|||++   .+++.|+.|+.||++|+|+.+|..||..+..
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            57999999999999999999999999999999998   4889999999999999999999999988764

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.66  E-value=2.2e-16  Score=92.51  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=49.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLS   60 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~   60 (78)
                      ..++|+||||+++++.++|+++|+++++.+|||++++...|.+|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            3589999999999999999999999999999999988999999999999985

>PHA02624 large T antigen; Provisional

Probab=99.60  E-value=7.4e-16  Score=109.96  Aligned_cols=65  Identities=17%  Similarity=0.268  Sum_probs=60.6

Q ss_pred             CCCCCccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 034961            4 MAPGMGGSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVY   68 (78)
Q Consensus         4 ~~~~~~~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Y   68 (78)
                      |......++|++|||++++  +..+||+|||++++++|||++++.+.|++|+.||++|+|+.+|..|
T Consensus         5 Ltree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          5 LSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             hchHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            4455567899999999999  9999999999999999999999999999999999999999999988

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.60  E-value=8.8e-16  Score=104.23  Aligned_cols=64  Identities=34%  Similarity=0.472  Sum_probs=59.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||.++|+..+|.+|||+++.++|||...       ++.+|.-|..|-+||+||.+|+.||..-
T Consensus       393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe  463 (504)
T KOG0624|consen  393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE  463 (504)
T ss_pred             cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence            469999999999999999999999999999999873       5678999999999999999999999753

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.4e-15  Score=99.18  Aligned_cols=66  Identities=38%  Similarity=0.476  Sum_probs=60.4

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ...|+|+||||++.++..+|.+|||++++++|||+.   +..+.|..|..||++|.|...|..||-.++
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence            346999999999999999999999999999999998   356789999999999999999999997664

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.52  E-value=6.2e-14  Score=87.31  Aligned_cols=64  Identities=20%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961           10 GSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus        10 ~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      .|||++||+++.  .+...+++.|+++.+.+|||+..         +.+....||+||.+|.||.+|+.|--.+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            489999999987  58999999999999999999972         24567899999999999999999987665

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.49  E-value=2.4e-14  Score=94.25  Aligned_cols=53  Identities=32%  Similarity=0.323  Sum_probs=48.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHcCC
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----------NGWDFTEIHNAYETLSD   61 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----------~~~~~~~i~~Ay~~L~d   61 (78)
                      ..++|+||||+++++.++||++||++++++|||+..           +.+.|+.|++||++|..
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999999999999999951           45789999999999975

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=3.6e-14  Score=97.57  Aligned_cols=65  Identities=35%  Similarity=0.493  Sum_probs=59.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ...|||.||||+++++..+|+++|+++++.+|||++.     ++..|.++-+||.+|+||.+|..||...
T Consensus       371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence            3569999999999999999999999999999999983     5788999999999999999999999654

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1e-13  Score=89.82  Aligned_cols=65  Identities=42%  Similarity=0.624  Sum_probs=58.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ..|+|.||||.++++..+|++||+.+++.+|||+++     +...|.+|.+||++|+|+.+|..||+...
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            469999999999999999999999999999999963     33468999999999999999999998654

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.36  E-value=4.7e-13  Score=93.03  Aligned_cols=63  Identities=30%  Similarity=0.426  Sum_probs=57.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMS   71 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~   71 (78)
                      .-|+|+|||++.+++..+||++||+++.++|||+.+         -++.+..|++||+.|+|...|..|-..
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~y  168 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY  168 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence            359999999999999999999999999999999973         368899999999999999999999764

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.31  E-value=8.2e-12  Score=76.76  Aligned_cols=53  Identities=32%  Similarity=0.427  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961           22 AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus        22 a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .+..+|+++|+++++.+|||+..         +...+..|++||++|+||.+|+.|.-.+.+
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g   64 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG   64 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            47789999999999999999852         346799999999999999999999988753

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1e-11  Score=78.84  Aligned_cols=62  Identities=27%  Similarity=0.409  Sum_probs=55.4

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHH
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYD   69 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd   69 (78)
                      -..|+|+||.|.|..+.++|++.||+++..+|||+++     +...|..|.+||..|.|+..|..-+
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            4569999999999999999999999999999999995     4678999999999999998665443

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=3.5e-11  Score=79.54  Aligned_cols=62  Identities=29%  Similarity=0.324  Sum_probs=55.8

Q ss_pred             ccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCC------ccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961            9 GGSLYEVLRVEP---TAMISEIKTVYRSLAKVYHHDLS------SNGWDFTEIHNAYETLSDPKARAVYDM   70 (78)
Q Consensus         9 ~~d~Y~iLgv~~---~a~~~~Ik~ay~~~~~~~hPd~~------~~~~~~~~i~~Ay~~L~d~~~R~~Yd~   70 (78)
                      ..|+|.+||++.   .+++.+|.+++++.+.++|||+.      +..+.|..|+.||+||+|+..|..||-
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS  112 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS  112 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence            469999999985   66889999999999999999986      346889999999999999999999984

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.8e-10  Score=66.37  Aligned_cols=51  Identities=22%  Similarity=0.238  Sum_probs=47.4

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 034961           12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDP   62 (78)
Q Consensus        12 ~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~   62 (78)
                      -=.||||+++++.+.||.++|+++...|||+++......+|++|+++|...
T Consensus        58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence            346999999999999999999999999999999999999999999999754

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.3e-09  Score=70.99  Aligned_cols=52  Identities=29%  Similarity=0.456  Sum_probs=47.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHH-HcCC
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYE-TLSD   61 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~-~L~d   61 (78)
                      ..||.||||..+|+.++++.+|..+++.+|||.+.   +.+.|.+|.+||. ||+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999983   6788999999999 6664

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=8.1e-08  Score=73.03  Aligned_cols=52  Identities=31%  Similarity=0.403  Sum_probs=44.9

Q ss_pred             cCcccccccCC----CCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCC
Q 034961           10 GSLYEVLRVEP----TAMISEIKTVYRSLAKVYHHDLSS-NGWDFTEIHNAYETLSD   61 (78)
Q Consensus        10 ~d~Y~iLgv~~----~a~~~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i~~Ay~~L~d   61 (78)
                      .+-|+||.|+-    ....++||++|++++.+||||+++ ..+.|..+++||+.|+.
T Consensus      1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence            36899999874    335588999999999999999996 67889999999999983

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=7.1e-07  Score=54.78  Aligned_cols=68  Identities=28%  Similarity=0.449  Sum_probs=55.6

Q ss_pred             CCccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            7 GMGGSLYEVLRVEP--TAMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         7 ~~~~d~Y~iLgv~~--~a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      +...+||.++|...  ..++..+..-|....+++|||...         +.+....|++||.+|.||..|+.|--.+..
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g   83 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG   83 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence            34568999998654  446777887999999999999852         467789999999999999999999866654

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.83  E-value=5.2e-05  Score=45.31  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=43.1

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhH
Q 034961           11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKA   64 (78)
Q Consensus        11 d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~   64 (78)
                      .-..||||++..+.++|.+.|.++....+|++++....-..|..|.+.|..+..
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999999999999886553

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=6.1e-05  Score=46.91  Aligned_cols=50  Identities=34%  Similarity=0.388  Sum_probs=43.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHc
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----------NGWDFTEIHNAYETL   59 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----------~~~~~~~i~~Ay~~L   59 (78)
                      .+.|.+||+....+..+|+++|+.+....|||+..           ..+.++.|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            58899999999999999999999999999999851           456788888888643

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.49  E-value=0.00015  Score=51.27  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHc
Q 034961           14 EVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----------NGWDFTEIHNAYETL   59 (78)
Q Consensus        14 ~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----------~~~~~~~i~~Ay~~L   59 (78)
                      +=+++..-.+..+||++||+.++.+||||..           +++.|..+++||...
T Consensus       392 qpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  392 QPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             ccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            3345566679999999999999999999972           345566666666543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00011  Score=45.78  Aligned_cols=63  Identities=29%  Similarity=0.420  Sum_probs=50.3

Q ss_pred             CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961           11 SLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus        11 d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      +++..+|..+.+  ..+.++..|+.+.+.+|||+..         ....+..++.||.+|.+|..|+.|-..+.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            456666766655  4566899999999999999973         23568889999999999999999976554

>PF13446 RPT: A repeated domain in UCH-protein

Probab=95.47  E-value=0.041  Score=28.54  Aligned_cols=45  Identities=13%  Similarity=0.201  Sum_probs=33.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCC
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSD   61 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d   61 (78)
                      .+-|+.|||+++.+.+.|-.+|..... ..|      .....+.+|..++.+
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia~   49 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIAE   49 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHHH
Confidence            357999999999999999999998887 333      334555666666654

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=95.35  E-value=0.065  Score=34.16  Aligned_cols=38  Identities=21%  Similarity=0.264  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 034961           19 EPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLS   60 (78)
Q Consensus        19 ~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~   60 (78)
                      +++|+.+||.+|+.++..++--    ++..-..|..||+.+.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~g----d~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAG----DEKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Confidence            5789999999999999999954    4678889999999543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.41  E-value=0.17  Score=30.23  Aligned_cols=53  Identities=19%  Similarity=0.202  Sum_probs=43.1

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhH
Q 034961           12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKA   64 (78)
Q Consensus        12 ~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~   64 (78)
                      --+||+|++..+.++|.+.|..+-....+.+++....-..|..|-+-|..+..
T Consensus        61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~El~  113 (132)
T KOG3442|consen   61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK  113 (132)
T ss_pred             HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999998876666667777776654433

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=92.15  E-value=0.25  Score=33.44  Aligned_cols=48  Identities=27%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCC--------ccHHHHHHHHHHHHHcCChhHHHHHH
Q 034961           22 AMISEIKTVYRSLAKVYHHDLS--------SNGWDFTEIHNAYETLSDPKARAVYD   69 (78)
Q Consensus        22 a~~~~Ik~ay~~~~~~~hPd~~--------~~~~~~~~i~~Ay~~L~d~~~R~~Yd   69 (78)
                      ++...|..+|+..+...||+..        ...+.+.+|.+||.+|.+...|...|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~   59 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPD   59 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchh
Confidence            5677899999999999999976        24567999999999999865544444

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=87.05  E-value=1.2  Score=26.00  Aligned_cols=42  Identities=14%  Similarity=0.218  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHHHHHcCC
Q 034961           20 PTAMISEIKTVYRSLAKVYHHDLSS--------NGWDFTEIHNAYETLSD   61 (78)
Q Consensus        20 ~~a~~~~Ik~ay~~~~~~~hPd~~~--------~~~~~~~i~~Ay~~L~d   61 (78)
                      +..+..+++.+.|..-+.+|||-.+        +++-++.++.-.+.|..
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~   53 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK   53 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence            3456778999999999999999763        34445555555444443

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=84.43  E-value=5  Score=22.02  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=26.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCC
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHD   41 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd   41 (78)
                      ..|--+++|+.|-++..+|+.+-++.++++.-.
T Consensus         2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt   34 (88)
T COG5552           2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGT   34 (88)
T ss_pred             ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence            345567899999999999999988887776433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		5e-09
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		3e-08
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		6e-07
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-06
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-06
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-06
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-06
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-06
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		8e-06
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		1e-05
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-05
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		9e-05
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		9e-05
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		1e-04
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		4e-04
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		4e-04
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		8e-04
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		8e-04

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWDFTEIHNAYETLSDPKARAVYD 69
          + Y+VL V+P A   E+K  YR LA  YH D + N G  F +I  AYE LSD K R +YD
Sbjct: 7  TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYDM 70
          Y+VL V+P A  +E+K  YR +A  +H D + +G + F +I  AYE LSD K R +YD 
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYDM 70
          LY++L V P+A   E+K  YR  A  YH D  +   + F EI  A+E L+DP+ R +YD 
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YE+L V  TA   EI+  Y+ LA  YH D +    +    F EI  AYE L+D + RA Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 69 DM 70
          D 
Sbjct: 66 DQ 67

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YE+L V  TA   EI+  Y+ LA  YH D +    +    F EI  AYE L+D + RA Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 69 DM 70
          D 
Sbjct: 66 DQ 67

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN---GWDFTEIHNAYETLSDPKARAVYD 69
          Y ++ V+PT  +  IKT YR LA+ YH D+S        F E+  A+E LSD + RA YD
Sbjct: 8  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 67
Query: 70 M 70
Sbjct: 68 Q 68

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          YE+L V  TA   EI+  Y+ LA  YH D +    +    F EI  AYE L+D + RA Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 69 DM 70
          D 
Sbjct: 66 DQ 67

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG---WDFTEIHNAYETLSDPKARAVYD 69
          Y +L V+PT  +  IKT YR LA+ YH D+S        F ++  A+E L D + RA YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 9  GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKA 64
          G SLY VL ++  A   +IK  YR LA  YH D + +  +    F EI+NA+  L+D   
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75
Query: 65 RAVYD 69
          R +YD
Sbjct: 76 RNIYD 80

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 7  GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG----WDFTEIHNAYETLSDP 62
          G  G  Y++L V   A   EIK  Y  LAK YH D + +       F+++  AYE LSD 
Sbjct: 4  GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 63 KARAVYD 69
            R  YD
Sbjct: 64 VKRKQYD 70

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPKARAV 67
          YEVL V+ +A   +IK  YR LA  +H D + +  +     F  +  AYE LSD K R++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 68 YDMSLVSTRR 77
          YD +   + R
Sbjct: 72 YDRAGCDSWR 81

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 9  GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKAR 65
          G   Y+ L +   A   EIK  YR  A  YH D +   G +  F EI  AY+ LSDP+ R
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 66 AVYD 69
           ++D
Sbjct: 62 EIFD 65

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFT-----EIHNAYETLSDPKAR 65
          S YE+L V  +A   +IK  YR  A  +H D + +  +F      E+  AYE LSD   R
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 66 AVYD 69
           +YD
Sbjct: 63 EIYD 66

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPKARAV 67
          YEVL V   A    IK  YR LA  +H D +    +     F ++  AYE LSD K R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 68 YD 69
          YD
Sbjct: 72 YD 73

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKARAVYD 69
          Y VL V  TA  ++IK  Y+ LA+ +H D + + G +  F +I  AYE LS+ + R  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN---GWDFTEIHNAYETLSDPKARAVYD 69
          Y++L V  +A   +IK  +  LA  YH D + +      F EI  AYETLSD   R  YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 7  GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPK 63
          G  G  YE+L V   A   ++K  YR LA  +H D +        F  I  AY  LS+P+
Sbjct: 4  GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 64 ARAVYDM 70
           R  YD 
Sbjct: 64 KRKQYDQ 70

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 11 SLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG----WDFTEIHNAYETLSDPKARA 66
          + Y +L V  TA   EI+  ++ LA   H D + N      DF +I+ AYE L D   R 
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 67 VYD 69
           YD
Sbjct: 63 KYD 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-16
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-16
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	1e-16
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-16
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	3e-16
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	3e-16
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	4e-16
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	9e-16
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-15
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-15
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-15
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	4e-15
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-15
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	4e-15
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	6e-15
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	7e-15
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-14
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-14
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-14
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-14
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	4e-14
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-13
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-13
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	1e-11
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-11
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-10
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-09
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	4e-09
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-07
2guz_A	71	Mitochondrial import inner membrane translocase su	4e-07

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 66.4 bits (163), Expect = 1e-16
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGW---DFTEIHNAYETLSDPKA 64
          MG   Y+ L +   A   EIK  YR  A  YH D +        F EI  AY+ LSDP+ 
Sbjct: 1  MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 65 RAVYD 69
          R ++D
Sbjct: 61 REIFD 65

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 66.6 bits (163), Expect = 1e-16
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYD 69
          LY++L V P+A   E+K  YR  A  YH D  +   + F EI  A+E L+DP+ R +YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 66.1 bits (162), Expect = 1e-16
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYD 69
           Y+VL V+P A  +E+K  YR +A  +H D + +G + F +I  AYE LSD K R +YD
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 66.3 bits (162), Expect = 3e-16
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPK 63
           G SLY VL ++  A   +IK  YR LA  YH D + +  +    F EI+NA+  L+D  
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74

Query: 64 ARAVYD 69
           R +YD
Sbjct: 75 KRNIYD 80

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 68.0 bits (166), Expect = 3e-16
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 12 LYEVLRVEPTAMIS--EIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69
          L ++L +E +A  +   ++  Y    K +H D   +     +++  Y+ + D    A   
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 72

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 67.2 bits (164), Expect = 3e-16
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----------FTEIHNAYETLSDP 62
          Y +L  +P+A IS++K  Y+ L  +YH D  S              F EI  A++ L + 
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 63 KARAVYDM 70
          + +  YD+
Sbjct: 73 ETKREYDL 80

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 66.0 bits (161), Expect = 4e-16
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 12 LYEVLRVEPTAMIS--EIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69
          L ++L +E +A  +   ++  Y    K +H D   +     +++  Y+ + D    A   
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 64.7 bits (158), Expect = 9e-16
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAV 67
          LY++L V  TA  ++IK  Y     +YH D +S   +    FT I  AY  L     R  
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78

Query: 68 YD 69
          YD
Sbjct: 79 YD 80

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 63.5 bits (155), Expect = 2e-15
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 6  PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGW---DFTEIHNAYETLSDP 62
            +    Y VL V  TA  ++IK  Y+ LA+ +H D + +      F +I  AYE LS+ 
Sbjct: 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNE 72

Query: 63 KARAVYD 69
          + R  YD
Sbjct: 73 EKRTNYD 79

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 67.3 bits (165), Expect = 2e-15
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 9/63 (14%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD------FTEIHNAYETLSDPKARA 66
          Y +L V+PT  +  IKT YR LA+ YH D+S    +      F ++  A+E L D + RA
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSK---ENDAEAKFKDLAEAWEVLKDEQRRA 87

Query: 67 VYD 69
           YD
Sbjct: 88 EYD 90

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 62.6 bits (153), Expect = 3e-15
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          Y++L V   A   EIK  Y  LAK YH D + +       F+++  AYE LSD   R  Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69

Query: 69 D 69
          D
Sbjct: 70 D 70

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 63.0 bits (154), Expect = 4e-15
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD------FTEIHNAYETLSDPKARA 66
          YE+L V  TA   EI+  Y+ LA  YH D   N  D      F EI  AYE L+D + RA
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPD--RNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 67 VYD 69
           YD
Sbjct: 64 AYD 66

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 65.7 bits (160), Expect = 4e-15
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          Y +L V  TA   EI+  ++ LA   H D + N  +    F +I+ AYE L D   R  Y
Sbjct: 5  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

Query: 69 D 69
          D
Sbjct: 65 D 65

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 62.8 bits (153), Expect = 4e-15
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----------FTEIHNAYETLSDP 62
          Y +L  +P+A +S++K  Y+ L  +YH D  S              F EI  A++ L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 63 KARAVYDM 70
          + +  YD+
Sbjct: 79 ETKKKYDL 86

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 61.9 bits (151), Expect = 6e-15
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGW---DFTEIHNAYETLSDPKARAVYD 69
          YE+L V   A   ++K  YR LA  +H D +        F  I  AY  LS+P+ R  YD
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 62.9 bits (153), Expect = 7e-15
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          Y +L  +  + + +I   ++  A   H D           F ++  A E L++ ++RA Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82

Query: 69 D 69
          D
Sbjct: 83 D 83

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 62.4 bits (152), Expect = 1e-14
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 13 YEVLRVEPTAM-ISEIKTVYRSLAKVYHHDLSSNGWD-------FTEIHNAYETLSDPKA 64
          Y+VL V        ++   YR+LA+ +H D   N  +       F  I  AYETL D +A
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 65 RAVYD 69
          +  YD
Sbjct: 78 KTNYD 82

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 60.8 bits (148), Expect = 2e-14
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGW---DFTEIHNAYETLSDPKARAVYD 69
          Y++L V  +A   +IK  +  LA  YH D + +      F EI  AYETLSD   R  YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 60.8 bits (148), Expect = 2e-14
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPKARAV 67
          YEVL V+ +A   +IK  YR LA  +H D + +  +     F  +  AYE LSD K R++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 68 YD 69
          YD
Sbjct: 72 YD 73

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 60.8 bits (148), Expect = 3e-14
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPKARAV 67
          YE+L V  +A   +IK  YR  A  +H D + +  +     F E+  AYE LSD   R +
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 68 YD 69
          YD
Sbjct: 65 YD 66

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 60.0 bits (146), Expect = 4e-14
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPKARAV 67
          YEVL V   A    IK  YR LA  +H D +    +     F ++  AYE LSD K R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 68 YD 69
          YD
Sbjct: 72 YD 73

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 59.0 bits (143), Expect = 1e-13
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSN-GWD--FTEIHNAYETLSDPKARAVYD 69
          +++L V+P A   E+   YR LA + H D     G +  F  + NA   L          
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPSS 89

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 62.1 bits (150), Expect = 2e-13
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD----FTEIHNAYETLSDPKARAVY 68
          Y +L V  TA   EI+  ++ LA   H D + N  +    F +I+ AYE L D   R  Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 69 DM 70
          D 
Sbjct: 84 DK 85

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 55.7 bits (134), Expect = 1e-11
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 13 YEVLRVEPTAMI--SEIKTVYRSLAKVYHHDLSSNGWD---------FTEIHNAYETLSD 61
          + +  +     +    +   ++ L + YH D  ++G              I+ A++TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 62 PKARAVYDMSL 72
          P  RA Y +SL
Sbjct: 64 PLMRAEYLLSL 74

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 52.3 bits (125), Expect = 3e-10
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 25 SEIKTVYRSLAKVYHHDLSSNGWD-FTEIHNAYETLSDPKARAVYDMSL 72
          S ++  YR L   +H D++  G +  + ++ AY TL DP  R+ Y + L
Sbjct: 33 SRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.8 bits (127), Expect = 4e-10
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 13  YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-------FTEIHNAYETLSDPKAR 65
           Y++L V+  A   EI   YR LA  +H D   N  +       F +I  A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 66  AVYDM 70
             +D 
Sbjct: 445 KKFDD 449

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 50.5 bits (120), Expect = 2e-09
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 13  YEVLRVEPTAMIS--EIKTVYRSLAKVYHHDLSSNGWD---------FTEIHNAYETLSD 61
           + ++    +  +   +++  Y+ L ++ H D  S              T +++AY+TL  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 62  PKARAVYDMS 71
           P +R +Y + 
Sbjct: 106 PLSRGLYLLK 115

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 47.4 bits (113), Expect = 4e-09
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 8/62 (12%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-----FTEIHNAYETLSDPKARAV 67
            V+        SE K + R L   +H D +    D     F  + N    L     +A 
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAF 75

Query: 68 YD 69
           D
Sbjct: 76 LD 77

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 46.1 bits (109), Expect = 1e-08
 Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 12 LYEVLRVEPTAM--ISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69
          L E+L++          ++  Y+  + + H D   +     E+++ + T          +
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN 72

Query: 70 MSLVSTR 76
          +     +
Sbjct: 73 LGGTGFQ 79

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 44.5 bits (104), Expect = 3e-07
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 9   GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-------FTEIHNAYETLSD 61
           G + ++ + +       ++K VYR    V H D ++           F E+++A+    +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175

Query: 62  PKARAVY 68
              + +Y
Sbjct: 176 QGQKPLY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 42.0 bits (99), Expect = 4e-07
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 13 YEVLRVEPTAM-ISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKAR 65
           ++L +    +   ++K V+R +    H D   + +  T+I+ A + L      
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.91
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.91
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.91
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.91
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.91
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.91
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.9
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.9
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.9
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.9
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.9
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.89
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.89
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.89
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.89
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.89
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.87
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.85
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.85
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.85
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.85
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.84
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.84
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.83
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.83
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.81
2guz_A	71	Mitochondrial import inner membrane translocase su	99.81
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.81
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.78
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.77
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.76
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.73
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.72
2guz_B	65	Mitochondrial import inner membrane translocase su	99.44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.39

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.91  E-value=6.8e-25  Score=119.68  Aligned_cols=68  Identities=37%  Similarity=0.522  Sum_probs=62.5

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVST   75 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~   75 (78)
                      +..|||+||||+++++.++|+++|+++++.+|||+++   +.+.|+.|++||++|+||.+|..||+.....
T Consensus         1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A            1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            3579999999999999999999999999999999984   6789999999999999999999999876544

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1.1e-24  Score=119.22  Aligned_cols=69  Identities=38%  Similarity=0.534  Sum_probs=62.9

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .+...|||+||||+++++.++|+++|+++++.+|||+++    +.+.|+.|++||++|+||.+|..||+....
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            456779999999999999999999999999999999985    468999999999999999999999987643

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=9.3e-25  Score=119.38  Aligned_cols=69  Identities=35%  Similarity=0.508  Sum_probs=63.2

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .+...|||+||||+++++.++|+++|+++++.+|||++   .+.+.|+.|++||++|+||.+|..||+.+..
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   74 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG   74 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            45567999999999999999999999999999999998   4678999999999999999999999987644

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=2.1e-24  Score=120.47  Aligned_cols=70  Identities=40%  Similarity=0.545  Sum_probs=63.8

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961            6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVST   75 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~   75 (78)
                      ++...|||+||||+++++.++|+++|+++++.+|||+++   +.+.|+.|++||++|+||.+|..||..+...
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            456679999999999999999999999999999999985   4788999999999999999999999877543

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.91  E-value=2.2e-24  Score=116.68  Aligned_cols=64  Identities=39%  Similarity=0.606  Sum_probs=60.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++++.++|+++|+++++.+|||+++ +.+.|+.|++||++|+||.+|..||+..
T Consensus         7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g   71 (73)
T 2och_A            7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGG   71 (73)
T ss_dssp             CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            469999999999999999999999999999999985 4789999999999999999999999865

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=2.6e-24  Score=122.39  Aligned_cols=68  Identities=34%  Similarity=0.457  Sum_probs=62.4

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      .....|||+||||+++++.++||++|+++++.+|||+++    +.+.|+.|++||++|+||.+|..||+.+.
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            455679999999999999999999999999999999984    47899999999999999999999998663

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.6e-24  Score=119.61  Aligned_cols=68  Identities=37%  Similarity=0.570  Sum_probs=62.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS-SNGWDFTEIHNAYETLSDPKARAVYDMSLVST   75 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~-~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~   75 (78)
                      ...|+|+||||+++++.++|+++|+++++.+|||++ .+.+.|+.|++||++|+||.+|..||+.....
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   74 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEA   74 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence            456999999999999999999999999999999998 46789999999999999999999999887554

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=7.2e-24  Score=122.89  Aligned_cols=69  Identities=22%  Similarity=0.256  Sum_probs=63.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961            7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVST   75 (78)
Q Consensus         7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~   75 (78)
                      ....|||+||||+++++.++||++|+++++.+|||+++    +.+.|+.|++||++|+||.+|..||+.+...
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~   89 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ   89 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence            34579999999999999999999999999999999985    4789999999999999999999999987654

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.90  E-value=1e-23  Score=117.69  Aligned_cols=68  Identities=34%  Similarity=0.453  Sum_probs=62.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      ....|||+||||+++++.++||++|+++++.+|||+++   +.+.|+.|++||++|+||.+|..||+....
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            34679999999999999999999999999999999984   678999999999999999999999987643

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.90  E-value=2.3e-24  Score=121.31  Aligned_cols=68  Identities=28%  Similarity=0.506  Sum_probs=62.1

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      ....|||+||||+++++.++||++|+++++.+|||+++          +.+.|+.|++||++|+||.+|..||..+..
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            34569999999999999999999999999999999963          468899999999999999999999998754

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=6.9e-24  Score=116.81  Aligned_cols=68  Identities=37%  Similarity=0.463  Sum_probs=61.6

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      .....|||+||||+++++.++|+++|+++++.+|||+++     +.+.|+.|++||++|+||.+|..||+...
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            344579999999999999999999999999999999985     35689999999999999999999998754

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=2.7e-23  Score=120.01  Aligned_cols=69  Identities=38%  Similarity=0.505  Sum_probs=62.6

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .....|+|+||||+++++.++||++|+++++++|||+++    +.+.|+.|++||++|+||.+|..||+....
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            445679999999999999999999999999999999985    378899999999999999999999986543

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.89  E-value=2e-23  Score=118.84  Aligned_cols=65  Identities=37%  Similarity=0.522  Sum_probs=60.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .|||+||||+++++.++||++|+++++.+|||+++     +.+.|+.|++||++|+||.+|..||.....
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~   71 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE   71 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            48999999999999999999999999999999984     457899999999999999999999998754

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.89  E-value=2.6e-23  Score=126.15  Aligned_cols=71  Identities=28%  Similarity=0.465  Sum_probs=63.9

Q ss_pred             CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            4 MAPGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----------NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         4 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      +......|||+||||+++++.++||++|+++++++|||+++          +.+.|..|++||++|+||.+|+.||..+.
T Consensus         4 ~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            4 VEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             cccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            44556679999999999999999999999999999999984          24889999999999999999999998876


Q ss_pred             H
Q 034961           74 S   74 (78)
Q Consensus        74 ~   74 (78)
                      .
T Consensus        84 ~   84 (155)
T 2l6l_A           84 E   84 (155)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=3e-23  Score=116.48  Aligned_cols=67  Identities=37%  Similarity=0.513  Sum_probs=61.3

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      ....|||+||||+++++.++|+++|+++++.+|||+++     +.+.|+.|++||++|+||.+|..||+...
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   77 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC   77 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            34569999999999999999999999999999999984     36789999999999999999999998764

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.89  E-value=2.4e-23  Score=120.08  Aligned_cols=67  Identities=33%  Similarity=0.398  Sum_probs=62.1

Q ss_pred             CccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            8 MGGSLYEVLRVEPTA-MISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a-~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      ...|||+||||++++ +.++||++|+++++.+|||+++       +.+.|+.|++||++|+||.+|..||+.+..
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            457999999999999 9999999999999999999875       368899999999999999999999998864

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.87  E-value=1e-23  Score=120.58  Aligned_cols=66  Identities=39%  Similarity=0.548  Sum_probs=60.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      ..|||+||||+++++.++||++|+++++++|||+++    +.+.|+.|++||++|+||.+|..||+....
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence            569999999999999999999999999999999974    468899999999999999999999986643

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=6.5e-22  Score=110.82  Aligned_cols=58  Identities=26%  Similarity=0.353  Sum_probs=54.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHcCChhHHH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLS---SNGWDFTEIHNAYETLSDPKARA   66 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~---~~~~~~~~i~~Ay~~L~d~~~R~   66 (78)
                      ..|||+||||+++++.++||++|+++++.+|||++   .+.+.|+.|++||++|+||.+|+
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            47999999999999999999999999999999998   57889999999999999998764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.85  E-value=1.4e-21  Score=121.96  Aligned_cols=65  Identities=34%  Similarity=0.449  Sum_probs=60.4

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      .|||+||||+++++.++||++||++++.+|||+++    +.+.|+.|++||++|+||.+|+.||+....
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~   70 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   70 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence            48999999999999999999999999999999984    578999999999999999999999987643

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.85  E-value=1.4e-22  Score=111.24  Aligned_cols=61  Identities=13%  Similarity=0.189  Sum_probs=57.0

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 034961            8 MGGSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVY   68 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Y   68 (78)
                      ...++|+||||+++  ++..+||++||++++++|||++++.+.|++|++||++|+|+..|..+
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33589999999999  99999999999999999999999999999999999999999988764

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.84  E-value=3.2e-23  Score=128.01  Aligned_cols=69  Identities=17%  Similarity=0.205  Sum_probs=60.0

Q ss_pred             CCCCCccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            4 MAPGMGGSLYEVLRVEPTAM--ISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         4 ~~~~~~~d~Y~iLgv~~~a~--~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      +.+....|+|+||||+++++  .++||+|||++++.+|||++++.+.|++|++||++|+||.+|+.||+..
T Consensus         5 l~~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G   75 (174)
T 2pf4_E            5 LNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFG   75 (174)
T ss_dssp             SCHHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred             hcccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccC
Confidence            33444579999999999998  6999999999999999999988899999999999999999999999865

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.84  E-value=1.9e-21  Score=119.80  Aligned_cols=64  Identities=22%  Similarity=0.333  Sum_probs=58.9

Q ss_pred             CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961           11 SLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus        11 d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      |||+||||++++  +..+|+++|+++++.+|||+++         +...|..|++||+||+||.+|+.||..+.+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g   76 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence            899999999999  9999999999999999999974         236899999999999999999999988753

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.83  E-value=7.7e-21  Score=120.13  Aligned_cols=68  Identities=21%  Similarity=0.366  Sum_probs=59.9

Q ss_pred             CCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 034961            7 GMGGSLYEVLRVEPT--AMISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLVS   74 (78)
Q Consensus         7 ~~~~d~Y~iLgv~~~--a~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~   74 (78)
                      ....|||+||||+++  ++..+|+++||++++++|||+++         +.+.|..|++||+||+||.+|+.||..+.+
T Consensus        40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G  118 (207)
T 3bvo_A           40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG  118 (207)
T ss_dssp             CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence            346799999999986  68999999999999999999974         246789999999999999999999987643

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.83  E-value=7.6e-23  Score=119.09  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHH
Q 034961            9 GGSLYEVLRVEPTAMI--SEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDM   70 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~--~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~   70 (78)
                      ..++|+||||+++++.  .+||++||++++++|||+++..+.|+.|++||+||+||.+|+.||.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~   70 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPD   70 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhh
Confidence            4589999999999998  9999999999999999999988999999999999999999999873

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.81  E-value=1.3e-20  Score=117.08  Aligned_cols=68  Identities=26%  Similarity=0.450  Sum_probs=61.0

Q ss_pred             CCCCccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            5 APGMGGSLYEVL------RVEP-TAMISEIKTVYRSLAKVYHHDLSS-NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         5 ~~~~~~d~Y~iL------gv~~-~a~~~~Ik~ay~~~~~~~hPd~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      .+....|||+||      |+++ +++..+|+++||++++.+|||+++ +.+.|..|++||+||+||.+|..||..+
T Consensus         6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            445567999999      4655 899999999999999999999986 7788999999999999999999999988

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.81  E-value=5.7e-21  Score=102.88  Aligned_cols=57  Identities=19%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHH
Q 034961            9 GGSLYEVLRVEP-TAMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKAR   65 (78)
Q Consensus         9 ~~d~Y~iLgv~~-~a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R   65 (78)
                      ..++|+||||++ +++.++|+++|+++++.+|||++++.+.|++|++||++|+++..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            358999999999 799999999999999999999999999999999999999987544

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.81  E-value=1.5e-21  Score=130.23  Aligned_cols=64  Identities=39%  Similarity=0.606  Sum_probs=0.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSL   72 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l   72 (78)
                      ..|||+||||+++|+.++||+|||++++++|||+++   +.+.|++|++||++|+||.+|+.||+.+
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   93 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLW   93 (329)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence            469999999999999999999999999999999874   5788999999999999999999999874

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.78  E-value=2.8e-20  Score=103.91  Aligned_cols=59  Identities=19%  Similarity=0.132  Sum_probs=53.2

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHH
Q 034961            7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKAR   65 (78)
Q Consensus         7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R   65 (78)
                      ....++|+||||+++++.++||++|+++++++|||+++     +.+.|+.|++||++|++...|
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            34468999999999999999999999999999999985     468999999999999987655

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.77  E-value=5e-20  Score=114.41  Aligned_cols=59  Identities=19%  Similarity=0.369  Sum_probs=54.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHH
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVY   68 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Y   68 (78)
                      .|+|+||||+++++..+||++||++++.+|||++.       +.+.|+.|++||++|+|+.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            59999999999999999999999999999999973       467999999999999999998765

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.76  E-value=4.3e-19  Score=102.04  Aligned_cols=54  Identities=13%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHcCChh
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----------NGWDFTEIHNAYETLSDPK   63 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----------~~~~~~~i~~Ay~~L~d~~   63 (78)
                      ..|||+|||++. ++..+||+|||++++.+|||+++           +.+.|+.|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            469999999996 99999999999999999999963           2678999999999999985

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.73  E-value=6.7e-19  Score=98.98  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=47.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCC
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSD   61 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d   61 (78)
                      .++|++|||+++++.++||+|||++++.+|||+++       ++..|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999873       46789999999999974

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.72  E-value=3.6e-19  Score=127.40  Aligned_cols=68  Identities=32%  Similarity=0.410  Sum_probs=40.3

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            6 PGMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      .....|||+||||+++|+.++||+|||++++.+|||+++    +.+.|+.|++||++|+||.+|+.||+...
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~   88 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   88 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence            345679999999999999999999999999999999983    46789999999999999999999998654

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.1e-13  Score=73.19  Aligned_cols=52  Identities=15%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             CcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 034961           11 SLYEVLRVEPT---AMISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDP   62 (78)
Q Consensus        11 d~Y~iLgv~~~---a~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~   62 (78)
                      .-|.||||+++   ++.++|+++|++++..+|||++++......|++|+++|...
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45789999999   99999999999999999999999999999999999998743

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.33  E-value=8.8e-13  Score=86.90  Aligned_cols=62  Identities=35%  Similarity=0.472  Sum_probs=52.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961           10 GSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVYDMS   71 (78)
Q Consensus        10 ~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~   71 (78)
                      .++|.+||+.++++.++|+++|+++++.+|||+.+       +...|..|.+||++|+||.+|..||+.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            48999999999999999999999999999999874       456899999999999999999999973

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.39  E-value=0.039  Score=39.14  Aligned_cols=46  Identities=22%  Similarity=0.168  Sum_probs=35.6

Q ss_pred             ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 034961            9 GGSLYEVLRVEPTAMI--SEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYET   58 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~--~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~   58 (78)
                      ..++|.+||++.+...  ..|+++||++++..+++    ...+..|..|..|
T Consensus       628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV  675 (681)
T ss_dssp             CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence            4469999999776655  66999999999966554    5678888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-14
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-13
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-12
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-11
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-11
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	9e-11
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-10
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-07

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 58.9 bits (142), Expect = 4e-14
 Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 11 SLYEVLRVEPTAMIS--EIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVY 68
           L E+L++          ++  Y+  + + H D   +     E+++ + T          
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM 71

Query: 69 DM 70
          ++
Sbjct: 72 NL 73

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (140), Expect = 1e-13
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 13 YEVLRVEPTAMISEIKTVYRSLAKVYH----------HDLSSNGWDFTEIHNAYETLSDP 62
          Y +L  +P+A +S++K  Y+ L  +YH            +      F EI  A++ L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 63 KARAVYDM 70
          + +  YD+
Sbjct: 79 ETKKKYDL 86

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 54.6 bits (131), Expect = 1e-12
 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNG----WDFTEIHNAYETLSDPKARAV 67
           YE+L V  TA   EI+  Y+ LA  YH D +         F EI  AYE L+D + RA 
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 68 YDM 70
          YD 
Sbjct: 65 YDQ 67

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 52.5 bits (125), Expect = 2e-11
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 12 LYEVLRVEPTAMIS--EIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYD 69
          L ++L +E +A  +   ++  Y    K +H D   +     +++  Y+ + D    A   
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 51.2 bits (122), Expect = 4e-11
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 13 YEVLRVEPTAMIS--EIKTVYRSLAKVYHHDLSSNG---------WDFTEIHNAYETLSD 61
          + +  +     +    +   ++ L + YH D  ++G              I+ A++TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 62 PKARAVYDMSL 72
          P  RA Y +SL
Sbjct: 64 PLMRAEYLLSL 74

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 9e-11
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 8  MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDF---TEIHNAYETLSDPKA 64
          MG   Y+ L +   A   EIK  YR  A  YH D +          EI  AY+ LSDP+ 
Sbjct: 1  MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 65 RAVYDM 70
          R ++D 
Sbjct: 61 REIFDR 66

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.3 bits (120), Expect = 1e-10
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 9  GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWD-------FTEIHNAYETLSD 61
          G + ++ + +       ++K VYR    V H D ++           F E+++A+    +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 62 PKARAVY 68
             + +Y
Sbjct: 92 QGQKPLY 98

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 1e-07
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 8/72 (11%)

Query: 12 LYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSSNGWDFTE-----IHNAYETLSDPKARA 66
          +  V+        SE K + R L   +H D +    D        + N    L     +A
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QA 74

Query: 67 VYDMSLVSTRRQ 78
            D +     R+
Sbjct: 75 FLDQNADRASRR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.94
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.9
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.89
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.87
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.85
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.72
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	81.57

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.9e-27  Score=126.41  Aligned_cols=70  Identities=39%  Similarity=0.519  Sum_probs=63.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHHHHhHHhhcC
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----NGWDFTEIHNAYETLSDPKARAVYDMSLVSTRRQ   78 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~~~q   78 (78)
                      ..|||+||||+++|+.++|++||+++++.+|||+++    +...|..|++||+||+||.+|..||+......+|
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~eq   75 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ   75 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCCC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccCC
Confidence            469999999999999999999999999999999973    4577999999999999999999999987665443

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.6e-26  Score=122.74  Aligned_cols=68  Identities=37%  Similarity=0.522  Sum_probs=62.2

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 034961            8 MGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS---NGWDFTEIHNAYETLSDPKARAVYDMSLVST   75 (78)
Q Consensus         8 ~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~~~   75 (78)
                      |..|||+||||+++++.++|+++|+++++.+|||+..   +.+.|..|++||+||+||.+|..||+.....
T Consensus         1 m~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~   71 (77)
T d1hdja_           1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            4679999999999999999999999999999999973   5678999999999999999999999876553

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.9e-25  Score=122.90  Aligned_cols=67  Identities=28%  Similarity=0.512  Sum_probs=60.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961            7 GMGGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS----------NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus         7 ~~~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~----------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      .+..|||+||||+++++.++|+++|+++++.+|||++.          +.+.|+.|++||+||+||.+|..||....
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            34579999999999999999999999999999999862          45779999999999999999999998754

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.89  E-value=1e-25  Score=129.78  Aligned_cols=63  Identities=19%  Similarity=0.248  Sum_probs=59.4

Q ss_pred             ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961            9 GGSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMS   71 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~   71 (78)
                      ..++|+||||+++|  +.++||+||+++++++|||++++.+.|+.|++||+||+||.+|..||..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~   71 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            45899999999999  7889999999999999999999999999999999999999999999864

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.87  E-value=5.1e-24  Score=115.73  Aligned_cols=66  Identities=12%  Similarity=0.191  Sum_probs=60.8

Q ss_pred             CCCccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961            6 PGMGGSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSSNGWDFTEIHNAYETLSDPKARAVYDMS   71 (78)
Q Consensus         6 ~~~~~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~   71 (78)
                      .....++|+||||++++  +..+|++||+++++.+|||++++.+.|++|++||++|.|+..|..||..
T Consensus         7 ~~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~~   74 (79)
T d1fafa_           7 RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHccC
Confidence            34556999999999988  8999999999999999999999999999999999999999999998753

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.3e-22  Score=108.26  Aligned_cols=64  Identities=22%  Similarity=0.313  Sum_probs=56.6

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCc---------cHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 034961           10 GSLYEVLRVEPTA--MISEIKTVYRSLAKVYHHDLSS---------NGWDFTEIHNAYETLSDPKARAVYDMSLV   73 (78)
Q Consensus        10 ~d~Y~iLgv~~~a--~~~~Ik~ay~~~~~~~hPd~~~---------~~~~~~~i~~Ay~~L~d~~~R~~Yd~~l~   73 (78)
                      .|||+||||++++  +.++|+++|+++++.+|||+..         +...|..|++||+||+||.+|..|+..|.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            3899999999865  5899999999999999999862         35678999999999999999999987764

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=2.2e-20  Score=104.81  Aligned_cols=60  Identities=20%  Similarity=0.399  Sum_probs=54.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHcCChhHHHHH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-------NGWDFTEIHNAYETLSDPKARAVY   68 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-------~~~~~~~i~~Ay~~L~d~~~R~~Y   68 (78)
                      +.+.|++||+++.++.++||++|+++++.+|||++.       +...|+.|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            457899999999999999999999999999999863       467899999999999999999766

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.7e-19  Score=96.71  Aligned_cols=60  Identities=22%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhHHHHHHHH
Q 034961            9 GGSLYEVLRVEPTAMISEIKTVYRSLAKVYHHDLSS-----NGWDFTEIHNAYETLSDPKARAVYDMS   71 (78)
Q Consensus         9 ~~d~Y~iLgv~~~a~~~~Ik~ay~~~~~~~hPd~~~-----~~~~~~~i~~Ay~~L~d~~~R~~Yd~~   71 (78)
                      -.++|+||||+.+++.++||+||+++++.+|||+++     +.+.|+.|++||++|++   +..||+.
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~   79 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQN   79 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhcc
Confidence            369999999999999999999999999999999984     46789999999999974   4445443

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.57  E-value=1.7  Score=20.50  Aligned_cols=49  Identities=16%  Similarity=0.260  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHhCCCCCcc-HHHHHHH---HHHHHHc-CCh-hHHHHHHHHhHH
Q 034961           26 EIKTVYRSLAKVYHHDLSSN-GWDFTEI---HNAYETL-SDP-KARAVYDMSLVS   74 (78)
Q Consensus        26 ~Ik~ay~~~~~~~hPd~~~~-~~~~~~i---~~Ay~~L-~d~-~~R~~Yd~~l~~   74 (78)
                      +.+++|..+.+..+-+.... ++....|   ..-|..| .+| .++..|+..+..
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~   55 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN   55 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhc
Confidence            45789999998877666532 3444533   3689999 577 689999988754