Citrus Sinensis ID: 034969

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MYILIILSSGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQTVQ
Secondary Structure (PSIPRED)
cEEEEccccccccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHccccccHcccccccccEEEcccccc
Coil and Loop (DISEMBL)
MYILIILssgansvdgrrpfqlvyhgqfddsrpsnnlpvtgrDIRLAIECVlsgqpvssnqkpsvgcsikwhpqtvq
Flexible Loop (DISEMBL)
MYILIILssgansvdgrRPFQLVYhgqfddsrpsnnLPVTGRDIRLAIECVLSgqpvssnqkpsvgcsikwhpqtvq
Low Complexity Region (SEG)
MYILIILSSGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQTVQ
Disordered region (IsUnstruct)
*YILIILSSGANSVDGRRPFQLVYHGQF********LPVTGRDIRLAIECVLS************************
Disordered Region (DISOPRED)
MYIL**************PFQLVYHGQFDD***********RDIRLAIECVLSGQPVSSNQKPSVGCSI*WHP****
Disordered Region (DISEMBL)
MYILIILSSGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG************CSIKWHPQTVQ
Disordered Region (DISPRO)
MYILIILSSGA*SVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYILIILSSGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQTVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
225457739	248	PREDICTED: uncharacterized protein LOC10	0.792	0.245	0.836	3e-25
302142779	246	unnamed protein product [Vitis vinifera]	0.792	0.247	0.836	3e-25
449443822	245	PREDICTED: uncharacterized protein LOC10	0.766	0.240	0.864	2e-24
449475598	245	PREDICTED: uncharacterized protein LOC10	0.766	0.240	0.864	2e-24
297850556	253	electron carrier/ oxidoreductase [Arabid	0.792	0.241	0.819	2e-24
255645689	246	unknown [Glycine max]	0.766	0.239	0.864	2e-24
356515995	246	PREDICTED: uncharacterized protein LOC10	0.766	0.239	0.864	3e-24
356509312	252	PREDICTED: uncharacterized protein LOC10	0.779	0.238	0.833	7e-24
224066737	150	predicted protein [Populus trichocarpa]	0.766	0.393	0.813	2e-23
42571571	252	thioredoxin-like protein [Arabidopsis th	0.792	0.242	0.803	4e-23

>gi|225457739|ref|XP_002278020.1| PREDICTED: uncharacterized protein LOC100253998 [Vitis vinifera]

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 57/61 (93%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74
           DGRRPF+LVYHGQFDDSRPSNN+ VTGRD+ LAI+CVLSGQP+S  QKPSVGCSIKWHP+
Sbjct: 188 DGRRPFELVYHGQFDDSRPSNNVRVTGRDLSLAIDCVLSGQPISLVQKPSVGCSIKWHPE 247

Query: 75  T 75
           T
Sbjct: 248 T 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142779|emb|CBI19982.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 57/61 (93%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74
           DGRRPF+LVYHGQFDDSRPSNN+ VTGRD+ LAI+CVLSGQP+S  QKPSVGCSIKWHP+
Sbjct: 186 DGRRPFELVYHGQFDDSRPSNNVRVTGRDLSLAIDCVLSGQPISLVQKPSVGCSIKWHPE 245

Query: 75  T 75
           T
Sbjct: 246 T 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443822|ref|XP_004139675.1| PREDICTED: uncharacterized protein LOC101213663 [Cucumis sativus]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 56/59 (94%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           DGRRPF+LVYHGQFDDSRPSNN P+TGRD+ LA++CVLSGQPVSS QKPSVGCSIKWHP
Sbjct: 187 DGRRPFELVYHGQFDDSRPSNNKPITGRDLSLALDCVLSGQPVSSVQKPSVGCSIKWHP 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475598|ref|XP_004154498.1| PREDICTED: uncharacterized protein LOC101229282 [Cucumis sativus]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 56/59 (94%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           DGRRPF+LVYHGQFDDSRPSNN P+TGRD+ LA++CVLSGQPVSS QKPSVGCSIKWHP
Sbjct: 187 DGRRPFELVYHGQFDDSRPSNNKPITGRDLSLALDCVLSGQPVSSVQKPSVGCSIKWHP 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850556|ref|XP_002893159.1| electron carrier/ oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297339001|gb|EFH69418.1| electron carrier/ oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74
           DGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+  LS QP+ SNQKPSVGCSIKWHP+
Sbjct: 191 DGRRPFELVYHGQFDDSRPSNNIPVTGRDLSLAIDLALSCQPIPSNQKPSVGCSIKWHPE 250

Query: 75  T 75
           T
Sbjct: 251 T 251

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645689|gb|ACU23338.1| unknown [Glycine max]

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/59 (86%), Positives = 55/59 (93%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           DGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+ VLSGQPV S QKPSVGCSIKWHP
Sbjct: 184 DGRRPFELVYHGQFDDSRPSNNVPVTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKWHP 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515995|ref|XP_003526682.1| PREDICTED: uncharacterized protein LOC100806693 [Glycine max]

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/59 (86%), Positives = 55/59 (93%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           DGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+ VLSGQPV S QKPSVGCSIKWHP
Sbjct: 184 DGRRPFELVYHGQFDDSRPSNNVPVTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKWHP 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509312|ref|XP_003523394.1| PREDICTED: uncharacterized protein LOC100780633 [Glycine max]

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74
           DGRRPF+LVYHGQFDDSRPSNN+P+TGRD+ LAI+ VLSGQPV S QKPSVGCSIKWHP+
Sbjct: 190 DGRRPFELVYHGQFDDSRPSNNVPLTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKWHPR 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066737|ref|XP_002302190.1| predicted protein [Populus trichocarpa] gi|222843916|gb|EEE81463.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 55/59 (93%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           DGRRPF+LVYHGQ+DDSRPSNN+P+TGRD+ LAI+CVLSGQPVS  QKPSVGC +KWHP
Sbjct: 89  DGRRPFELVYHGQYDDSRPSNNVPITGRDLSLAIDCVLSGQPVSPVQKPSVGCGVKWHP 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571571|ref|NP_973876.1| thioredoxin-like protein [Arabidopsis thaliana] gi|9454568|gb|AAF87891.1|AC015447_1 Hypothetical protein [Arabidopsis thaliana] gi|222424480|dbj|BAH20195.1| AT1G21350 [Arabidopsis thaliana] gi|332191971|gb|AEE30092.1| thioredoxin-like protein [Arabidopsis thaliana]

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/61 (80%), Positives = 55/61 (90%)

Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74
           DGRRPF+LVYHGQFDDSRPS+N PVTGRD+ LAI+  LS QP+ SNQKPSVGCSIKWHP+
Sbjct: 190 DGRRPFELVYHGQFDDSRPSSNSPVTGRDLSLAIDLSLSCQPIPSNQKPSVGCSIKWHPE 249

Query: 75  T 75
           T
Sbjct: 250 T 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
TAIR|locus:2027052	252	AT1G21350 [Arabidopsis thalian	0.792	0.242	0.803	6.8e-24
UNIPROTKB|Q83C53	185	CBU_1278 "Thiol-disulfide isom	0.636	0.264	0.510	2.5e-10
TIGR_CMR|CBU_1278	185	CBU_1278 "conserved hypothetic	0.636	0.264	0.510	2.5e-10
UNIPROTKB|Q2GII1	190	APH_1306 "Putative uncharacter	0.688	0.278	0.388	7.8e-06
TIGR_CMR|APH_1306	190	APH_1306 "conserved hypothetic	0.688	0.278	0.388	7.8e-06
UNIPROTKB|Q2GHV8	193	ECH_0147 "Putative uncharacter	0.701	0.279	0.4	5.5e-05
TIGR_CMR|ECH_0147	193	ECH_0147 "conserved hypothetic	0.701	0.279	0.4	5.5e-05
UNIPROTKB|Q2GCP6	176	NSE_0884 "Putative uncharacter	0.623	0.272	0.407	0.00035
TIGR_CMR|NSE_0884	176	NSE_0884 "conserved hypothetic	0.623	0.272	0.407	0.00035

TAIR|locus:2027052 AT1G21350 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 49/61 (80%), Positives = 55/61 (90%)

Query:    15 DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74
             DGRRPF+LVYHGQFDDSRPS+N PVTGRD+ LAI+  LS QP+ SNQKPSVGCSIKWHP+
Sbjct:   190 DGRRPFELVYHGQFDDSRPSSNSPVTGRDLSLAIDLSLSCQPIPSNQKPSVGCSIKWHPE 249

Query:    75 T 75
             T
Sbjct:   250 T 250

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

UNIPROTKB|Q83C53 CBU_1278 "Thiol-disulfide isomerase and thioredoxin" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query:    23 VYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
             VY G+FD + P  + PVTG D+R A++ +L+G  V  NQ+PS GC+IKW
Sbjct:   135 VYRGRFDSATPGRDTPVTGEDLRSALDNILAGNLVDPNQQPSQGCNIKW 183

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1278 CBU_1278 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query:    23 VYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
             VY G+FD + P  + PVTG D+R A++ +L+G  V  NQ+PS GC+IKW
Sbjct:   135 VYRGRFDSATPGRDTPVTGEDLRSALDNILAGNLVDPNQQPSQGCNIKW 183

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2GII1 APH_1306 "Putative uncharacterized protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 105 (42.0 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query:    18 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
             R  QL Y G+FDD +      +   ++  A++ + +   V  NQKPS+GCSIKW
Sbjct:   130 RDLQLCYRGRFDDQKAVEGA-LGASELYEAVKFIATTGGVPENQKPSIGCSIKW 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_1306 APH_1306 "conserved hypothetical protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 105 (42.0 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query:    18 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
             R  QL Y G+FDD +      +   ++  A++ + +   V  NQKPS+GCSIKW
Sbjct:   130 RDLQLCYRGRFDDQKAVEGA-LGASELYEAVKFIATTGGVPENQKPSIGCSIKW 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GHV8 ECH_0147 "Putative uncharacterized protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 98 (39.6 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query:    21 QLVYHGQFDDSRPSN-NLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74
             +L Y G+FD S  +  N     RD+  A++ +        NQKPS+GCSIKW  Q
Sbjct:   133 ELCYRGRFDASGKNQMNSKQEDRDLFNAMKLISKTGESPENQKPSIGCSIKWKSQ 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_0147 ECH_0147 "conserved hypothetical protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 98 (39.6 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query:    21 QLVYHGQFDDSRPSN-NLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 74
             +L Y G+FD S  +  N     RD+  A++ +        NQKPS+GCSIKW  Q
Sbjct:   133 ELCYRGRFDASGKNQMNSKQEDRDLFNAMKLISKTGESPENQKPSIGCSIKWKSQ 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GCP6 NSE_0884 "Putative uncharacterized protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 90 (36.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query:    18 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
             R  +L Y GQF D     +      D+  A+  +  G+ VS  QKPS+GCSIKW
Sbjct:   128 RNLELQYRGQFIDLASGTH------DLLDAMLEIAGGRKVSRKQKPSIGCSIKW 175

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|NSE_0884 NSE_0884 "conserved hypothetical protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 90 (36.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query:    18 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
             R  +L Y GQF D     +      D+  A+  +  G+ VS  QKPS+GCSIKW
Sbjct:   128 RNLELQYRGQFIDLASGTH------DLLDAMLEIAGGRKVSRKQKPSIGCSIKW 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       77        77   0.00091  102 3  11 22  0.40    29
                                                     29  0.50    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  103 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.27u 0.14s 8.41t   Elapsed:  00:00:01
  Total cpu time:  8.28u 0.14s 8.42t   Elapsed:  00:00:01
  Start:  Fri May 10 04:08:44 2013   End:  Fri May 10 04:08:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014275001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (246 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002136001	SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (681 aa)	•			•					0.536
	GSVIVG00030474001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (329 aa)	•								0.506
	GSVIVG00024616001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence;; GTPase of unknown phy [...] (462 aa)	•								0.490
	GSVIVG00023093001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (264 aa)	•								0.465
	GSVIVG00037524001	SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (396 aa)	•								0.444
	GSVIVG00020369001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (555 aa)	•			•					0.444
	GSVIVG00027605001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (230 aa)							•		0.430
	GSVIVG00021326001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (702 aa)	•								0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	77
cd02969	171	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 fam	2e-27

>gnl|CDD|239267 cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

 Score = 96.9 bits (242), Expect = 2e-27
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 17  RRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
               +LVY G+ DDSRP N+ PVTGRD+R A++ +L+G+PV   Q PS+GCSIKW
Sbjct: 117 DPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.05
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.68
smart00685	59	DM14 Repeats in fly CG4713, worm Y37H9A.3 and huma	80.76

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.05  E-value=4.1e-10  Score=75.75  Aligned_cols=52  Identities=60%  Similarity=1.122  Sum_probs=45.8

Q ss_pred             eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeee
Q 034969           20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW   71 (77)
Q Consensus        20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKw   71 (77)
                      ++|+|+|.+++.+.......+.++|++||+++|+|+..+.++|++.||+++|
T Consensus       120 G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  171 (171)
T cd02969         120 GKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW  171 (171)
T ss_pred             CeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence            5699999999875433345689999999999999999999999999999999

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.68  E-value=2e-05  Score=54.88  Aligned_cols=50  Identities=22%  Similarity=0.435  Sum_probs=36.2

Q ss_pred             EEEeee--ccCCCC-----CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           22 LVYHGQ--FDDSRP-----SNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        22 L~Y~Gr--IDD~~~-----~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      +.|+|.  ||.+..     ..+.+ ..++++++++.|.+.+.++.   +++||++||++++
T Consensus       125 ~~~r~~fiID~~G~i~~~~~~~~~-~~r~~~e~l~~l~a~~~~~~---~~~~cp~~w~~g~  181 (199)
T PTZ00253        125 VAYRGLFIIDPKGMLRQITVNDMP-VGRNVEEVLRLLEAFQFVEK---HGEVCPANWKKGD  181 (199)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHhhhhHHh---cCCEeCCCCCcCC
Confidence            456666  665532     02223 45688999999999999886   5899999999865

>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A

Probab=80.76  E-value=1.9  Score=25.83  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCC
Q 034969           42 RDIRLAIECVLSGQPVSSNQKPS   64 (77)
Q Consensus        42 ~yL~~AI~allaGk~v~~~~T~s   64 (77)
                      .-+++||++.-+|++|+....|+
T Consensus        35 K~~~~~I~~~~aG~pVd~~~lP~   57 (59)
T smart00685       35 KQFDDAIKAARAGRPVDLSELPP   57 (59)
T ss_pred             hhHHHHHHHHHCCCCCChhcCCC
Confidence            34778999999999999998876

3 and human FLJ20241.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	77
2ywi_A	196	Crystal Structure Of Uncharacterized Conserved Prot		1e-15
3u5r_E	218	Crystal Structure Of A Hypothetical Protein Smc0235		2e-14
2cvb_A	188	Crystal Structure Of A Thioredoxin-Like Protein Fro		7e-06

>pdb|2YWI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Geobacillus Kaustophilus Length = 196

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 18  RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           R  + VY GQ DDSRP+N +PVTG  IR A++ +L G+PV   QKPS+GCSIKW P
Sbjct: 139 RDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKP 194

>pdb|3U5R|E Chain E, Crystal Structure Of A Hypothetical Protein Smc02350 From Sinorhizobium Meliloti 1021 Length = 218

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 18  RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 71
           R  +LVYHGQFDD+RP N   VTG D+R A++ VL G+ V + Q PS+GC+IKW
Sbjct: 152 RERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKW 205

>pdb|2CVB|A Chain A, Crystal Structure Of A Thioredoxin-Like Protein From Thermus Thermophilus Hb8 Length = 188

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 15  DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           D RR   L YHG+ +D+ P +   V   D+  AIE +L G+     + P++GC+IKW P
Sbjct: 124 DERR--LLRYHGRVNDN-PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRP 179
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	77
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	3e-27
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	7e-27
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	6e-24

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Length = 196

 Score = 96.4 bits (240), Expect = 3e-27
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 20  FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
            + VY GQ DDSRP+N +PVTG  IR A++ +L G+PV   QKPS+GCSIKW P
Sbjct: 141 LKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKP 194

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Length = 218

 Score = 96.3 bits (240), Expect = 7e-27
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 21  QLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
           +LVYHGQFDD+RP N   VTG D+R A++ VL G+ V + Q PS+GC+IKW  
Sbjct: 155 RLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTA 207

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Length = 188

 Score = 87.8 bits (218), Expect = 6e-24
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 20  FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
             L YHG+ +D+ P +   V   D+  AIE +L G+     + P++GC+IKW P
Sbjct: 127 RLLRYHGRVNDN-PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRP 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.44
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.2
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.14
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	96.57
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	96.53
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	96.48
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	96.0
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	95.95
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	95.45
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	95.32
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	94.68
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	94.43
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	94.21
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	94.12
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	93.14
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	89.59
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	87.39
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	82.18

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.44  E-value=1.6e-13  Score=93.83  Aligned_cols=55  Identities=55%  Similarity=1.005  Sum_probs=49.5

Q ss_pred             eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCC
Q 034969           20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ   74 (77)
Q Consensus        20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~   74 (77)
                      |+++|+|++|++++......+..+|+++|+++++|++++.++|+++||+|+|+++
T Consensus       154 G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~  208 (218)
T 3u5r_E          154 RRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAG  208 (218)
T ss_dssp             CBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC
T ss_pred             CcEEEeccccccccccccccCHHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCC
Confidence            5599999999997655556788999999999999999999999999999999864

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.20  E-value=3e-11  Score=79.26  Aligned_cols=55  Identities=58%  Similarity=1.145  Sum_probs=46.7

Q ss_pred             eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCC
Q 034969           20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ   74 (77)
Q Consensus        20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~   74 (77)
                      |+++|+|++|+.++......+..+|+++|++++++++++.++++++||+|+|+++
T Consensus       141 G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~  195 (196)
T 2ywi_A          141 LKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKPS  195 (196)
T ss_dssp             CBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCC
T ss_pred             CeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccC
Confidence            4599999999985422223467899999999999999999999999999999876

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.14  E-value=5e-11  Score=78.17  Aligned_cols=55  Identities=35%  Similarity=0.716  Sum_probs=46.2

Q ss_pred             eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      |+++|+|.+|+.++ .....+..+|+++|++++++++++.++++++||+|+|++++
T Consensus       127 G~i~~~g~~~~~~~-~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~  181 (188)
T 2cvb_A          127 RLLRYHGRVNDNPK-DPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN  181 (188)
T ss_dssp             CBEEEEECSSSCTT-CGGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred             CcEEEEEecCCccc-cccccCHHHHHHHHHHHHcCCCCCcccCCCCceEEEecCCC
Confidence            45999999998753 22234567899999999999999999999999999998765

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=96.57  E-value=0.002  Score=42.38  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=25.2

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      ...+|.++|++|..     ..++|+.||+++|+++.
T Consensus       143 ~~~~l~~~l~~l~~-----~~~~p~~~~p~~w~~~~  173 (186)
T 1n8j_A          143 DASDLLRKIKAAQY-----VAAHPGEVCPAKWKEGE  173 (186)
T ss_dssp             CHHHHHHHHHHHHH-----HHHSTTCBBCTTCCTTS
T ss_pred             CHHHHHHHHHHHHH-----HhhcCCCccCCCCCCCC
Confidence            46789999999986     44577999999999764

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=96.53  E-value=0.0041  Score=42.18  Aligned_cols=45  Identities=7%  Similarity=0.007  Sum_probs=20.4

Q ss_pred             eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      |+++|+.. .+...    .....++.++|++|+..      +.++.+|+++|+++.
T Consensus       157 G~I~~~~~-g~~~~----~~~~~ell~~l~~l~~~------~~~~~~cp~~W~~g~  201 (220)
T 1zye_A          157 GVIKHLSV-NDLPV----GRSVEETLRLVKAFQFV------EAHGEVSPANWTPES  201 (220)
T ss_dssp             SBEEEEEE-ECTTC----CCCHHHHHHHHHHHHHT------TC-------------
T ss_pred             CEEEEEEe-cCCCC----CCCHHHHHHHHHHhhhh------cccCCccCCCCCCCC
Confidence            45777653 22211    13577899999999976      467899999998764

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=96.48  E-value=0.0013  Score=44.58  Aligned_cols=52  Identities=12%  Similarity=-0.001  Sum_probs=34.5

Q ss_pred             eeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           11 ANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        11 ~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      .|..|.+  |+++|+..-+.. .    .....+|.++|+++...+      ++++||++||+++.
T Consensus       145 ~~lID~~--G~i~~~~~~~~~-~----~~~~~ell~~l~~l~~~~------~~~~~cp~~w~~g~  196 (213)
T 2i81_A          145 FVLIDMN--GIVQHLLVNNLA-I----GRSVDEILRIIDAIQHHE------KYGDVCPANWQKGK  196 (213)
T ss_dssp             EEEECTT--SBEEEEEEECTT-C----CCCHHHHHHHHHHHHHHH------HHCCBCCTTCCTTS
T ss_pred             EEEECCC--CEEEEEEecCCC-C----CCCHHHHHHHHHHHHhhh------hcCCCcCCCCCcCC
Confidence            3444443  558888532222 1    125778999999998643      46899999998764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=96.00  E-value=0.0039  Score=42.13  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=33.8

Q ss_pred             ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      ..|..|.+  |+++|+..=+.. .    .....++.++|++|...      +++++||+++|++++
T Consensus       141 ~~~lID~~--G~I~~~~~g~~~-~----~~~~~ell~~l~~l~~~------~~~~~~~p~~w~~g~  193 (211)
T 2pn8_A          141 GLFIIDDK--GILRQITLNDLP-V----GRSVDETLRLVQAFQYT------DKHGEVCPAGWKPGS  193 (211)
T ss_dssp             EEEEECTT--SBEEEEEEECTT-B----CCCHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred             eEEEECCC--CEEEEEEecCCC-C----CCCHHHHHHHHHHhhhc------ccCCcccCCCCCCCC
Confidence            34444443  457776432111 1    12466889999998865      556899999998764

>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*

Probab=95.95  E-value=0.0044  Score=40.70  Aligned_cols=30  Identities=10%  Similarity=0.269  Sum_probs=23.1

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      ...++.++|+++...      ++++.||+++|+++.
T Consensus       150 ~~~e~l~~l~~l~~~------~~~~~~cp~~w~~g~  179 (197)
T 1qmv_A          150 SVDEALRLVQAFQYT------DEHGEVCPAGWKPGS  179 (197)
T ss_dssp             CHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred             CHHHHHHHHHhcchh------hccCCccCCCcCcCC
Confidence            456788888888653      367999999999864

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=95.45  E-value=0.0075  Score=40.83  Aligned_cols=29  Identities=17%  Similarity=0.335  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           41 GRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        41 ~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      ...+.++|+++   +.+   +++++||+|+|+++.
T Consensus       186 ~~~il~~l~~l---~~~---~~~~~~c~~~w~~~~  214 (222)
T 3ztl_A          186 VDETLRLLDAF---QFV---EKHGEVCPVNWKRGQ  214 (222)
T ss_dssp             HHHHHHHHHHH---HHH---HHHSCBBCTTCCTTS
T ss_pred             HHHHHHHHHHh---hcc---cccCccCCcCcCCCC
Confidence            34444444444   333   678999999999764

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=95.32  E-value=0.007  Score=39.45  Aligned_cols=45  Identities=11%  Similarity=0.006  Sum_probs=30.1

Q ss_pred             eEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           20 FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        20 ~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      |+++|+..=+.. .    .....++.++|+++...      ++.+.||+++|+++.
T Consensus       131 G~i~~~~~g~~~-~----~~~~~~l~~~l~~l~~~------~~~~~~cp~~w~~~~  175 (192)
T 2h01_A          131 GVVQHLLVNNLA-L----GRSVDEILRLIDALQHH------EKYGDVCPANWQKGK  175 (192)
T ss_dssp             SBEEEEEEGGGS-S----GGGHHHHHHHHHHHHHH------HHHCCCCCSSCCCC-
T ss_pred             CEEEEEEeCCCC-C----CCCHHHHHHHHHHHhhh------hhcCCCccCCCCCCC
Confidence            457777542221 1    13567899999998864      345899999998764

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=94.68  E-value=0.022  Score=38.99  Aligned_cols=52  Identities=12%  Similarity=0.116  Sum_probs=27.3

Q ss_pred             eeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           11 ANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        11 ~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      .|..|.+  |+++|+-.=+.. .    ......+.++|++|...      ++.++||+++|+++.
T Consensus       149 ~~lID~~--G~I~~~~~g~~~-~----~~~~~ell~~l~~L~~~------~~~~~~cp~~W~~g~  200 (221)
T 2c0d_A          149 LFIIDKN--GCVRHQTVNDLP-I----GRNVQEVLRTIDSIIHV------DTSGEVCPINWKKGQ  200 (221)
T ss_dssp             EEEECTT--SBEEEEEEECTT-C----CCCHHHHHHHHHHHHHH------HHHCCSCC-------
T ss_pred             EEEECCC--CeEEEEEecCCC-C----CCCHHHHHHHHHHHhhh------hcCCCcCCCCCCCCC
Confidence            4444543  457776321111 1    12567899999998864      446899999998764

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=94.43  E-value=0.0035  Score=43.53  Aligned_cols=52  Identities=13%  Similarity=0.082  Sum_probs=29.6

Q ss_pred             eeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           11 ANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        11 ~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      .|..|.+  |+|+|+..-+.. .    .....++.++|+++..   +.   ...+||++||++++
T Consensus       171 ~flID~~--G~I~~~~~~~~~-~----~~~~~eil~~l~~lq~---~~---~~~~~cp~~W~~g~  222 (240)
T 3qpm_A          171 LFIIDEK--GVLRQITMNDLP-V----GRSVDETLRLVQAFQY---TD---KHGEVCPAGWKPGS  222 (240)
T ss_dssp             EEEECTT--SBEEEEEEECTT-B----CCCHHHHHHHHHHHHH---HH---HHSCBBCTTCCTTS
T ss_pred             EEEEcCC--CeEEEEEecCCC-C----CCCHHHHHHHHHHhhh---hh---hcCCccCCCCCCCC
Confidence            4445553  568887543222 1    1234556666666542   21   23899999999874

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=94.21  E-value=0.024  Score=39.87  Aligned_cols=53  Identities=13%  Similarity=0.048  Sum_probs=20.3

Q ss_pred             ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      ..|..|.+  |+|+|+-.-+.. .    .....++.++|+++....      ...+||+++|++++
T Consensus       184 ~tflID~~--G~I~~~~~~~~~-~----~~~~~eil~~L~alq~~~------~~~~~cp~~W~~g~  236 (254)
T 3tjj_A          184 GLFIIDDK--GILRQITLNDLP-V----GRSVDETLRLVQAFQYTD------KHGEVAPAGWKPGS  236 (254)
T ss_dssp             EEEEECTT--SBEEEEEEECTT-C----CCCHHHHHHHHHHHHHHH------HHC-----------
T ss_pred             eEEEECCC--CeEEEEEecCCC-C----CCCHHHHHHHHHhhcccc------ccCccccCCCCCCC
Confidence            34555553  568877543222 1    123455666666654321      12789999999875

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=94.12  E-value=0.032  Score=36.74  Aligned_cols=30  Identities=13%  Similarity=0.248  Sum_probs=24.5

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      +..+|.++|+++...      +....+|+++|+++.
T Consensus       152 ~~~ell~~l~~l~~~------~~~~~~~p~~w~~g~  181 (202)
T 1uul_A          152 DVDEALRLVKAFQFV------EKHGEVCPANWKPGD  181 (202)
T ss_dssp             CHHHHHHHHHHHHHH------HHHSCBBCTTCCTTS
T ss_pred             CHHHHHHHHHHhhhh------hhcCCccCCCcCCCC
Confidence            577899999999864      346899999998764

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=93.14  E-value=0.086  Score=33.92  Aligned_cols=31  Identities=13%  Similarity=0.308  Sum_probs=17.9

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      +..+|.++|++++..+     ++|..+|+++|.++.
T Consensus       144 ~~~~l~~~l~~l~~~~-----~~~~~~~p~~w~~~~  174 (187)
T 1we0_A          144 DASTLINKVKAAQYVR-----ENPGEVCPAKWEEGG  174 (187)
T ss_dssp             CTTHHHHHHHHHHHHH-----TSTTCCC--------
T ss_pred             CHHHHHHHHHHHhhhh-----hCCCcccccccccCC
Confidence            3457889999998753     577899999998764

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=89.59  E-value=0.25  Score=34.16  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=34.9

Q ss_pred             cceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969            9 SGANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus         9 ~~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      -.+|..|.+  ++|+|+-.-+... .    -...++.++|++|....      ...++|+++|+++.
T Consensus       128 p~~fiID~~--G~I~~~~~~~~~~-g----r~~~eilr~l~~Lq~~~------~~~~~~p~~W~~g~  181 (233)
T 2v2g_A          128 RAVFIIGPD--KKLKLSILYPATT-G----RNFSEILRVIDSLQLTA------QKKVATPADWQPGD  181 (233)
T ss_dssp             EEEEEECTT--SBEEEEEEECTTB-C----CCHHHHHHHHHHHHHHH------HSSEEBCTTCCTTS
T ss_pred             ceEEEECCC--CEEEEEEecCCCC-C----CCHHHHHHHHHHHHhhc------cCCccCCCCcCcCC
Confidence            456666665  4465554322221 1    14678999999998753      34899999998764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=87.39  E-value=1.2  Score=28.75  Aligned_cols=26  Identities=12%  Similarity=0.332  Sum_probs=12.2

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           40 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        40 t~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      ...+|.++|+++++          ..+|+++|+++.
T Consensus       157 ~~~~l~~~l~~l~~----------~~~~p~~w~~~~  182 (195)
T 2bmx_A          157 NVDEVLRVLDALQS----------DELCASNWRKGD  182 (195)
T ss_dssp             CHHHHHHHHHHHHC----------------------
T ss_pred             CHHHHHHHHHHHhh----------CCCcCcccccCC
Confidence            46789999999987          348999998653

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=82.18  E-value=0.73  Score=31.31  Aligned_cols=53  Identities=8%  Similarity=0.019  Sum_probs=33.5

Q ss_pred             ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      .+|..|.+  |+|+++-.-+...     .-...++.++|++|....      ...+.|.++|++|.
T Consensus       133 ~~fiID~~--G~I~~~~~~~~~~-----gr~~~eil~~i~~l~~~~------~~~~~~p~~W~~g~  185 (224)
T 1prx_A          133 VVFVFGPD--KKLKLSILYPATT-----GRNFDEILRVVISLQLTA------EKRVATPVDWKDGD  185 (224)
T ss_dssp             EEEEECTT--SBEEEEEECCTTB-----CCCHHHHHHHHHHHHHHH------HHCEEBCTTCCTTS
T ss_pred             EEEEECCC--CEEEEEEecCCCC-----CCCHHHHHHHHHHHHhhc------cCCcCCCCCCCCCC
Confidence            45666665  4465554322221     114678999999998753      23689999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	77
d2cvba1	187	c.47.1.10 (A:2-188) Probable thiol-disulfide isome	1e-19

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Length = 187

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

 Score = 76.1 bits (186), Expect = 1e-19
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 17  RRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 73
                L YHG+ +D+ P +   V   D+  AIE +L G+     + P++GC+IKW P
Sbjct: 123 DERRLLRYHGRVNDN-PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRP 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	77
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.84
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	85.68
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	83.11

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=4.8e-22  Score=134.84  Aligned_cols=57  Identities=33%  Similarity=0.679  Sum_probs=51.0

Q ss_pred             CeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCCC
Q 034969           19 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQTV   76 (77)
Q Consensus        19 ~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~~   76 (77)
                      +|+|+|||||||++ .....++.+||++||+++|+|+++++++|+|+||+|||++|+.
T Consensus       125 ~G~i~y~G~idd~~-~~~~~~~~~~L~~Ai~~ll~g~~~~~~~t~~~GC~ik~~~~~~  181 (187)
T d2cvba1         125 RRLLRYHGRVNDNP-KDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGNE  181 (187)
T ss_dssp             TCBEEEEECSSSCT-TCGGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTCC
T ss_pred             CCeEEEEeeecCCC-CCCCCCCHHHHHHHHHHHHcCCCCCccccCCCCcceeECCCCC
Confidence            36799999999995 4555678999999999999999999999999999999999863

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.15  Score=33.23  Aligned_cols=53  Identities=15%  Similarity=0.170  Sum_probs=30.8

Q ss_pred             ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCCC
Q 034969           10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   75 (77)
Q Consensus        10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~~   75 (77)
                      +.|.-|.+  ++++|.-.-+..     ......++-.+|++|..-.      ....+|+++|++|+
T Consensus       127 ~tfiID~~--g~Ir~~~~~~~~-----~~r~~~E~lr~l~alq~~~------~~g~~cp~~W~pG~  179 (197)
T d1qmva_         127 GLFIIDGK--GVLRQITVNDLP-----VGRSVDEALRLVQAFQYTD------EHGEVCPAGWKPGS  179 (197)
T ss_dssp             EEEEECTT--SBEEEEEEECTT-----BCCCHHHHHHHHHHHHHHH------HHCCBBCTTCCTTS
T ss_pred             EEEEECCC--CcEEEEEecCCC-----cccCHHHHHHHHHhhcccc------ccCcCcCCCCCCCC
Confidence            34555553  556665221111     1235667888888885411      12458999999986

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=83.11  E-value=0.26  Score=30.85  Aligned_cols=52  Identities=12%  Similarity=0.078  Sum_probs=31.3

Q ss_pred             ceeecCCCCCeEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCccceeeeeCC
Q 034969           10 GANSVDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ   74 (77)
Q Consensus        10 ~~~~~~~~~~~~L~Y~GrIDD~~~~~~~~vt~~yL~~AI~allaGk~v~~~~T~siGCsIKwk~~   74 (77)
                      +.|..|.+  ++++|.= +.+.. ..   ....++.+||++|...+      ....+|+++|++|
T Consensus       119 ~tfiId~~--G~I~~~~-~~~~~-~~---~~~~eil~~l~~lq~~~------~~~~~~~~~w~~g  170 (170)
T d2h01a1         119 AFVLIDKQ--GVVQHLL-VNNLA-LG---RSVDEILRLIDALQHHE------KYGDVCPANWQKG  170 (170)
T ss_dssp             EEEEECTT--SBEEEEE-EGGGS-SG---GGHHHHHHHHHHHHHHH------HHCCCCCSSCCCC
T ss_pred             eeEEEcCC--CeEEEEE-EecCC-CC---CCHHHHHHHHHHhhhhh------hcCCccCCCCCCC
Confidence            55666664  6677652 22221 11   13456888888886532      2345999999986