Citrus Sinensis ID: 034999


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70------
MERSVRLFSTVLLVLLLLASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC
cccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEcccccccHHHHHccccccccccccccccEEEEccc
cccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccHHHHcccccccccccccEEEEEEcccc
MERSVRLFSTVLLVLLLLASEMGLRAAEARICesqshrfkgpcvsksncaavcqtegfhgghcrgfrrrcfctkrc
MERSVRLFSTVLLVLLLLASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTegfhgghcrgfrrrcfctkrc
MERSVRLFSTvllvllllASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTEgfhgghcrgfrrrcfcTKRC
****VRLFSTVLLVLLLLASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCT***
*****RL*STVLLVLLLLASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC
MERSVRLFSTVLLVLLLLASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC
**RSVRLFSTVLLVLLLLASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MERSVRLFSTVLLVLLLLASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query76 2.2.26 [Sep-21-2011]
Q4090178 Defensin-like protein OS= N/A no 1.0 0.974 0.666 2e-22
Q3918277 Defensin-like protein 2 O yes no 1.0 0.987 0.636 8e-21
A3FPF277 Defensin-like protein OS= N/A no 1.0 0.987 0.688 4e-20
Q9ZUL777 Defensin-like protein 1 O no no 1.0 0.987 0.610 5e-20
O6574074 Defensin J1-2 OS=Capsicum N/A no 0.855 0.878 0.661 2e-19
Q9C94776 Defensin-like protein 5 O no no 1.0 1.0 0.578 2e-19
Q4191477 Defensin-like protein 4 O no no 1.0 0.987 0.610 2e-19
P2034674 Defensin-like protein P32 N/A no 0.947 0.972 0.648 3e-19
P8265978 Defensin SD2 OS=Helianthu N/A no 1.0 0.974 0.602 5e-19
P8278162 Putative defensin-like pr no no 0.815 1.0 0.532 4e-14
>sp|Q40901|DEF_PETIN Defensin-like protein OS=Petunia integrifolia PE=2 SV=1 Back     alignment and function desciption
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 64/78 (82%), Gaps = 2/78 (2%)

Query: 1  MERSVRLFSTVLLV-LLLLASEMG-LRAAEARICESQSHRFKGPCVSKSNCAAVCQTEGF 58
          M RS+RLF+T  L+ +L L++EMG + +AEAR CESQSHRF G CV +SNCA+VCQTEGF
Sbjct: 1  MGRSIRLFATFFLIAMLFLSTEMGPMTSAEARTCESQSHRFHGTCVRESNCASVCQTEGF 60

Query: 59 HGGHCRGFRRRCFCTKRC 76
           GG+CR FRRRCFCT+ C
Sbjct: 61 IGGNCRAFRRRCFCTRNC 78




May be involved in the defense of the pistil against pathogen infection.
Petunia integrifolia (taxid: 4103)
>sp|Q39182|DEF02_ARATH Defensin-like protein 2 OS=Arabidopsis thaliana GN=PDF2.2 PE=2 SV=1 Back     alignment and function description
>sp|A3FPF2|DEF_NELNU Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1 Back     alignment and function description
>sp|Q9ZUL7|DEF01_ARATH Defensin-like protein 1 OS=Arabidopsis thaliana GN=PDF2.3 PE=2 SV=1 Back     alignment and function description
>sp|O65740|DEF2_CAPAN Defensin J1-2 OS=Capsicum annuum PE=1 SV=1 Back     alignment and function description
>sp|Q9C947|DEF05_ARATH Defensin-like protein 5 OS=Arabidopsis thaliana GN=PDF2.4 PE=3 SV=2 Back     alignment and function description
>sp|Q41914|DEF04_ARATH Defensin-like protein 4 OS=Arabidopsis thaliana GN=PDF2.1 PE=2 SV=2 Back     alignment and function description
>sp|P20346|DF322_SOLTU Defensin-like protein P322 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P82659|DFSD2_HELAN Defensin SD2 OS=Helianthus annuus GN=SD2 PE=2 SV=1 Back     alignment and function description
>sp|P82781|DEF03_ARATH Putative defensin-like protein 3 OS=Arabidopsis thaliana GN=LCR71 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query76
22542595577 PREDICTED: defensin-like protein [Vitis 1.0 0.987 0.766 3e-24
356523850 235 PREDICTED: uncharacterized protein LOC10 0.973 0.314 0.710 6e-24
2862454679 defensin protein 1 [Prunus persica] 1.0 0.962 0.734 1e-23
31298241278 defensin D2 [Phaseolus vulgaris] 1.0 0.974 0.730 2e-22
30164135878 defensin [Pyrus pyrifolia] gi|440355212| 1.0 0.974 0.705 4e-22
13371182076 defensin protein [Solanum lycopersicum] 1.0 1.0 0.657 4e-22
38423623075 defensin [Malus x domestica] 0.986 1.0 0.723 7e-22
13371182576 defensin protein [Solanum pimpinellifoli 1.0 1.0 0.644 7e-22
22554830678 defensin precursor [Vigna unguiculata] 1.0 0.974 0.717 1e-21
1622542378 putative gamma-thionin [Castanea sativa] 1.0 0.974 0.769 2e-21
>gi|225425955|ref|XP_002274353.1| PREDICTED: defensin-like protein [Vitis vinifera] gi|297738306|emb|CBI27507.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 65/77 (84%), Gaps = 1/77 (1%)

Query: 1  MERSVRLFSTVLLVLLL-LASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTEGFH 59
          M+ S RLFS  LLV+LL +A+EMG   AEAR CESQSHRFKG CV +SNCAAVCQTEGFH
Sbjct: 1  MKGSQRLFSAFLLVILLFMATEMGPMVAEARTCESQSHRFKGTCVRQSNCAAVCQTEGFH 60

Query: 60 GGHCRGFRRRCFCTKRC 76
          GG+CRGFRRRCFCTK C
Sbjct: 61 GGNCRGFRRRCFCTKHC 77




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523850|ref|XP_003530547.1| PREDICTED: uncharacterized protein LOC100798577 [Glycine max] Back     alignment and taxonomy information
>gi|28624546|gb|AAL85480.1| defensin protein 1 [Prunus persica] Back     alignment and taxonomy information
>gi|312982412|gb|ADR30067.1| defensin D2 [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|301641358|gb|ADK87340.1| defensin [Pyrus pyrifolia] gi|440355212|gb|AGC00408.1| defensin 1 [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|133711820|gb|ABO36637.1| defensin protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|384236230|gb|AFH74424.1| defensin [Malus x domestica] Back     alignment and taxonomy information
>gi|133711825|gb|ABO36641.1| defensin protein [Solanum pimpinellifolium] Back     alignment and taxonomy information
>gi|225548306|gb|ACN93800.1| defensin precursor [Vigna unguiculata] Back     alignment and taxonomy information
>gi|16225423|gb|AAL15885.1|AF417297_1 putative gamma-thionin [Castanea sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query76
TAIR|locus:205166877 LCR69 "low-molecular-weight cy 0.736 0.727 0.543 2.2e-09
TAIR|locus:205163877 LCR68 "low-molecular-weight cy 0.736 0.727 0.526 2.9e-09
TAIR|locus:220605676 LCR66 "low-molecular-weight cy 0.736 0.736 0.482 4.2e-08
TAIR|locus:205164877 PDF2.1 [Arabidopsis thaliana ( 0.736 0.727 0.473 6.1e-07
UNIPROTKB|A4L7R883 Def2 "Defensin-2" [Pinus sylve 0.460 0.421 0.514 1.1e-05
UNIPROTKB|A4L7R783 Def1 "Defensin-1" [Pinus sylve 0.460 0.421 0.485 2.4e-05
TAIR|locus:205170373 LCR72 "low-molecular-weight cy 0.723 0.753 0.357 6.3e-05
TAIR|locus:216056973 PDF2.5 [Arabidopsis thaliana ( 0.486 0.506 0.459 0.0001
TAIR|locus:100902318280 LCR73 "low-molecular-weight cy 0.710 0.675 0.327 0.00035
TAIR|locus:2051668 LCR69 "low-molecular-weight cysteine-rich 69" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/57 (54%), Positives = 34/57 (59%)

Query:     1 MERSVRLFSTXXXXXXXX-ASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQTE 56
             M+ S+RL S          A+ MG    EAR CESQSHRFKG CVS SNCA VC  E
Sbjct:     1 MKLSMRLISAVLIMFMIFVATGMGPVTVEARTCESQSHRFKGTCVSASNCANVCHNE 57




GO:0005576 "extracellular region" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0030414 "peptidase inhibitor activity" evidence=ISS
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
TAIR|locus:2051638 LCR68 "low-molecular-weight cysteine-rich 68" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206056 LCR66 "low-molecular-weight cysteine-rich 66" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051648 PDF2.1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4L7R8 Def2 "Defensin-2" [Pinus sylvestris (taxid:3349)] Back     alignment and assigned GO terms
UNIPROTKB|A4L7R7 Def1 "Defensin-1" [Pinus sylvestris (taxid:3349)] Back     alignment and assigned GO terms
TAIR|locus:2051703 LCR72 "low-molecular-weight cysteine-rich 72" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160569 PDF2.5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023182 LCR73 "low-molecular-weight cysteine-rich 73" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39182DEF02_ARATHNo assigned EC number0.63631.00.9870yesno
P86518DEF1_ECHCGNo assigned EC number0.72340.61841.0N/Ano
P86519DEF2_ECHCGNo assigned EC number0.72340.61841.0N/Ano
Q40901DEF_PETINNo assigned EC number0.66661.00.9743N/Ano
A3FPF2DEF_NELNUNo assigned EC number0.68831.00.9870N/Ano
O65740DEF2_CAPANNo assigned EC number0.66170.85520.8783N/Ano
P20346DF322_SOLTUNo assigned EC number0.64860.94730.9729N/Ano
P83399DEF1_VIGUNNo assigned EC number0.70210.61841.0N/Ano
P82659DFSD2_HELANNo assigned EC number0.60251.00.9743N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00035146001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (77 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
pfam0030447 pfam00304, Gamma-thionin, Gamma-thionin family 4e-18
smart0050545 smart00505, Knot1, Knottins 1e-08
cd0010733 cd00107, Knot1, The "knottin" fold is stable cyste 2e-06
>gnl|CDD|109365 pfam00304, Gamma-thionin, Gamma-thionin family Back     alignment and domain information
 Score = 69.6 bits (171), Expect = 4e-18
 Identities = 35/47 (74%), Positives = 36/47 (76%)

Query: 30 RICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC 76
          R CES S  FKGPC S SNCA VC+ EGF GGHC GFRRRCFCTK C
Sbjct: 1  RTCESPSGTFKGPCFSDSNCAKVCRNEGFAGGHCSGFRRRCFCTKPC 47


Length = 47

>gnl|CDD|214700 smart00505, Knot1, Knottins Back     alignment and domain information
>gnl|CDD|238055 cd00107, Knot1, The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 76
PF0030447 Gamma-thionin: Gamma-thionin family; InterPro: IPR 99.72
smart0050545 Knot1 Knottins. Knottins, representing plant lecti 99.11
cd0010733 Knot1 The "knottin" fold is stable cysteine-rich s 98.88
PF0109734 Defensin_2: Arthropod defensin; InterPro: IPR00154 98.08
PF1086890 DUF2667: Protein of unknown function (DUF2667); In 98.02
PF0053754 Toxin_3: Scorpion toxin-like domain ; InterPro: IP 96.99
PF0733358 SLR1-BP: S locus-related glycoprotein 1 binding po 95.54
PF0045132 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IP 95.5
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 95.08
PF1486656 Toxin_38: Potassium channel toxin 94.77
PF0808641 Toxin_17: Ergtoxin family; InterPro: IPR012622 The 94.37
PF0712754 Nodulin_late: Late nodulin protein; InterPro: IPR0 93.58
PF0811937 Toxin_31: Scorpion acidic alpha-KTx toxin family; 91.3
PF1486559 Macin: Macin; PDB: 2K35_A 2LN8_A. 84.98
PF1069098 Myticin-prepro: Myticin pre-proprotein from the mu 84.45
>PF00304 Gamma-thionin: Gamma-thionin family; InterPro: IPR008176 The following small plant proteins are evolutionary related: Gamma-thionins from Triticum aestivum (Wheat) endosperm (gamma-purothionins) and gamma-hordothionins from Hordeum vulgare(Barley) are toxic to animal cells and inhibit protein synthesis in cell free systems [] Back     alignment and domain information
Probab=99.72  E-value=1.4e-18  Score=94.71  Aligned_cols=47  Identities=62%  Similarity=1.258  Sum_probs=42.4

Q ss_pred             ccccccCCceeecCCCccchhHHhhhcCCCceeecCCCCceEEecCC
Q 034999           30 RICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC   76 (76)
Q Consensus        30 ~~C~~~s~~~~G~C~~~~~C~~~C~~eg~~~G~C~~~~~~C~C~~~C   76 (76)
                      ++|+++|++|+|+|+++++|+++|++|+|++|+|+++.++|+|++||
T Consensus         1 k~C~~~S~tf~G~C~~~~~C~~~C~~eg~~~G~C~~~~~~C~C~~~C   47 (47)
T PF00304_consen    1 KTCERPSGTFKGLCFSDSNCANVCINEGFTGGKCSGPLRRCFCTKPC   47 (47)
T ss_dssp             EEEEEESSSS-SS-SSHHHHHHHHHHCTSSEEEEETTTTEEEEEEEE
T ss_pred             CcccccCCCceeECCCcchhhHHhccCCCCCCEeCCCCceEEEeCcC
Confidence            57999999999999999999999999999999999767899999997



A flower-specific thionin (FST) from Nicotiana tabacum (Common Tobacco)[]. Antifungal proteins (AFP) from the seeds of Brassicaceae species such as radish, mustard, turnip and Arabidopsis thaliana (Thale Cress)[]. Inhibitors of insect alpha-amylases from sorghum []. Probable protease inhibitor P322 from Solanum tuberosum (Potato). A germination-related protein from Vigna unguiculata (Cowpea) []. Anther-specific protein SF18 from sunflower. SF18 is a protein that contains a gamma-thionin domain at its N terminus and a proline-rich C-terminal domain. Glycine max (Soybean) sulphur-rich protein SE60 []. Vicia faba (Broad bean) antibacterial peptides fabatin-1 and -2. In their mature form, these proteins generally consist of about 45 to 50 amino-acid residues. As shown in the following schematic representation, these peptides contain eight conserved cysteines involved in disulphide bonds. +-------------------------------------------+ | +-------------------+ | | | | | xxCxxxxxxxxxxCxxxxxCxxxCxxxxxxxxxCxxxxxxCxCxxxC | | | | +---|----------------+ | +------------------+ 'C': conserved cysteine involved in a disulphide bond. The folded structure of Gamma-purothionin is characterised by a well-defined 3-stranded anti-parallel beta-sheet and a short alpha-helix []. Three disulphide bridges are located in the hydrophobic core between the helix and sheet, forming a cysteine-stabilised alpha-helical motif. This structure differs from that of the plant alpha- and beta- thionins, but is analogous to scorpion toxins and insect defensins.; GO: 0006952 defense response; PDB: 4AB0_A 4AAZ_B 1N4N_A 2KPY_A 1JKZ_A 1AYJ_A 1GPT_A 1BK8_A 2GL1_A 1GPS_A ....

>smart00505 Knot1 Knottins Back     alignment and domain information
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments Back     alignment and domain information
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ] Back     alignment and domain information
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana Back     alignment and domain information
>PF00537 Toxin_3: Scorpion toxin-like domain ; InterPro: IPR002061 Scorpion toxins, which may be mammal or insect specific, bind to sodium channels, inhibiting the inactivation of activated channels and blocking neuronal transmission Back     alignment and domain information
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins Back     alignment and domain information
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PF14866 Toxin_38: Potassium channel toxin Back     alignment and domain information
>PF08086 Toxin_17: Ergtoxin family; InterPro: IPR012622 The Ergtoxin (ErgTx) family is a class of peptides from scorpion venom that specifically block ERG (ether-a-go-go-related gene) K+ channels of the nerve, heart and endocrine cells [, , ] Back     alignment and domain information
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein Back     alignment and domain information
>PF08119 Toxin_31: Scorpion acidic alpha-KTx toxin family; InterPro: IPR012635 This entry represents proteins that are acidic alpha-KTx short chain scorpion toxins Back     alignment and domain information
>PF14865 Macin: Macin; PDB: 2K35_A 2LN8_A Back     alignment and domain information
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
2lr3_A47 Solution Structure Of The Anti-Fungal Defensin Def4 5e-07
>pdb|2LR3|A Chain A, Solution Structure Of The Anti-Fungal Defensin Def4 (Mtr_8g070770) From Medicago Truncatula (Barrel Clover) Length = 47 Back     alignment and structure

Iteration: 1

Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 21/27 (77%), Positives = 23/27 (85%) Query: 30 RICESQSHRFKGPCVSKSNCAAVCQTE 56 R CESQSH+FKGPC S NCA+VCQTE Sbjct: 1 RTCESQSHKFKGPCASDHNCASVCQTE 27

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
1gps_A47 Gamma-1-P thionin; plant toxin; NMR {Triticum turg 2e-21
1mr4_A47 Nicotiana alata plant defensin 1 (NAD1); cysteine- 1e-19
2ksk_A71 Sugarcane defensin 5; csalphabeta motif, antimicro 1e-09
1n4n_A47 PHD1, floral defensin-like protein 1; cysteine-sta 4e-06
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 1e-04
>1gps_A Gamma-1-P thionin; plant toxin; NMR {Triticum turgidum} SCOP: g.3.7.5 PDB: 1gpt_A Length = 47 Back     alignment and structure
 Score = 77.4 bits (191), Expect = 2e-21
 Identities = 26/47 (55%), Positives = 33/47 (70%)

Query: 30 RICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC 76
          +IC  +S  FKGPC+S  NCA VCQ EG+ GG+C G  RRC C ++C
Sbjct: 1  KICRRRSAGFKGPCMSNKNCAQVCQQEGWGGGNCDGPFRRCKCIRQC 47


>1mr4_A Nicotiana alata plant defensin 1 (NAD1); cysteine-stabilized alpha-beta motif, plant defensin fold, plant protein; NMR {Nicotiana tabacum} SCOP: g.3.7.5 PDB: 4aaz_A 4ab0_A Length = 47 Back     alignment and structure
>2ksk_A Sugarcane defensin 5; csalphabeta motif, antimicrobial protein; NMR {Saccharum officinarum} Length = 71 Back     alignment and structure
>1n4n_A PHD1, floral defensin-like protein 1; cysteine-stabilised alpha-beta motif, fifth disulfide bond, plant protein; NMR {Petunia x hybrida} SCOP: g.3.7.5 Length = 47 Back     alignment and structure
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query76
2ksk_A71 Sugarcane defensin 5; csalphabeta motif, antimicro 99.81
1n4n_A47 PHD1, floral defensin-like protein 1; cysteine-sta 99.79
1mr4_A47 Nicotiana alata plant defensin 1 (NAD1); cysteine- 99.79
2lr3_A47 Defensin; fungal disease, antifungal agent, antifu 99.79
1gps_A47 Gamma-1-P thionin; plant toxin; NMR {Triticum turg 99.79
1ayj_A51 RS-AFP1, antifungal protein 1; fungicide, plant de 99.77
1ti5_A46 Plant defensin; insecticidal activity, MUNG bean, 99.77
1jkz_A46 PSD1, defense-related peptide 1; plant defensin, C 99.73
3psm_A47 Defensin, SPE10; dimer, antimicrobial protein; 0.9 99.72
1bk8_A50 AH-AMP1, antimicrobial protein 1; plant defensin, 99.71
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 99.7
1myn_A44 Drosomycin; insect immunity, antifungal, csalpha-b 99.23
1i2u_A44 Defensin heliomicin; alpha-beta protein, CSAB moti 98.61
2e3e_A45 Defensin, mutant DEF-BBB; insect defensin, CSAB mo 98.21
2ln4_A44 Coprisin; antimicrobial protein, defensin-like pep 98.11
2lr5_A38 Micasin; antimicrobial protein; NMR {Arthroderma o 97.26
1zfu_A40 Plectasin; defensin,antimicrobial peptide,cysteine 97.97
1fjn_A39 Defensin MGD-1; cystine stabilized alpha-beta moti 97.95
2e3g_A40 Defensin, mutant DEF-DAA; insect defensin, CSAB mo 97.93
2b68_A43 Defensin; antibacterial peptide, cysteine-rich pep 97.86
1ica_A40 Insect defensin A; antibacterial protein; NMR {Pro 97.81
2koz_A33 Nasonin-1; alpha/beta structure, disulfide bonds, 97.49
1t1t_A63 Kurtoxin, KTX; cysteine stabilized alpha-beta; NMR 97.02
2k9o_A36 VM24 scorpion toxin; ALFA/beta scaffold, beta shee 96.92
2i61_A62 Insect toxin 2; scorpion toxin, depressant, anti-i 96.83
1nra_A63 Neurotoxin V, CSE-V; NMR {Centruroides sculpturatu 96.82
1c49_A35 Toxin K-beta; scorpion toxin, potassium channels b 96.78
1quz_A35 HSTX1 toxin; scorpion toxin, alpha beta, molecular 96.73
1wt7_A41 BUTX-MTX; maurotoxin, butantoxin, scorpion toxin, 96.64
1wmt_A41 ISTX; neurotoxin, potassium channel blocker, solut 96.63
1qky_A38 PI7, toxin 7 from pandinus imperator; neurotoxin; 96.44
1n8m_A38 PI4, potassium channel blocking toxin 4; potassium 96.42
2yeo_A65 Alpha-insect toxin lqhait; defense response; HET: 96.32
1dq7_A64 Neurotoxin; 2.20A {Mesobuthus tamulus} SCOP: g.3.7 96.27
1aho_A64 Toxin II; scorpion, AB initio phasing, neurotoxin; 96.27
1snb_A64 Neurotoxin BMK M8; sodium channel inhibitor, scorp 96.27
1i6f_A60 Neurotoxin V-5, CSE-V5; scorpion, sodium channel, 96.18
1kv0_A66 BMK M7, BMKM7, alpha-like toxin BMK-M7; non-prolyl 96.14
1c55_A40 Butantoxin; structure; NMR {Tityus serrulatus} SCO 96.12
1agt_A38 Agitoxin 2; potassium channel blocker, neurotoxin; 95.99
1j5j_A36 BEKM-1 toxin; alpha-beta motif, cysteine-knot moti 95.99
1wz5_A35 Potassium channel blocking toxin 1; ionic channel 95.95
1bmr_A68 LQH III alpha-like toxin; scorpion toxin, sodium c 95.89
2axk_A38 Discrepin; scorpion toxin, A-current, K+-channel,; 95.82
1pe4_A67 Neurotoxin CN11, CN12; scorpion toxin, sodium chan 95.81
1hp2_A37 Tityustoxin K alpha; K+ channel, scorpion toxin, a 95.73
1npi_A61 Toxin VII, TSTX-VII; xcitatory neurotoxin; 1.16A { 95.63
1hly_A39 Hongotoxin 1; scorpion, centruroides limbatus HGTX 95.57
2ljm_A82 CSS II, cssii, beta-mammal toxin CSS2; CS ALFA bet 95.54
1m2s_A37 Toxin BMTX3, neurotoxin TX3; alpha/beta scaffold; 95.5
1big_A37 Toxin BMTX1; scorpion, neurotoxin, structure, larg 95.47
1b3c_A64 Protein (neurotoxin CSE-I); scorpion neurotoxin, N 95.46
1pjv_A32 Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroi 95.43
2yc1_C66 Beta-mammal toxin CN2; immune system-toxin complex 95.41
1cmr_A31 Charybdotoxin, alpha chimera; antagonist of nicoti 95.37
1bah_A37 Charybdotoxin, chabii; neurotoxin, potassium chann 95.29
1t0z_A72 Insect neurotoxin; alpha-beta; 2.60A {Mesobuthus m 95.29
2sn3_A65 Scorpion neurotoxin (variant 3); 1.20A {Centruroid 95.27
1r1g_A31 Neurotoxin BMK37, BMBKTTX1; siras from S atoms, sc 95.21
1bcg_A77 Toxin BJXTR-IT; excitatory neurotoxin; 2.10A {Hott 94.57
1ne5_A42 Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stran 94.27
2ddl_A33 Leiurotoxin, LEI4P; scorpion toxin analog; NMR {Sy 94.21
2lt8_A42 Eurocin; A/B-fold, cysteine stabilised, antimicrob 94.19
1tsk_A35 TS KAPA; scorpion, toxin, potassium channel, neuro 93.89
1brz_A54 Brazzein; sweet protein, cysteine-stabilized alpha 93.03
1jxc_A68 Putative trypsin inhibitor ATTI-2; chymotrypsin in 89.97
1pvz_A31 K+ toxin-like peptide; alpha/beta scaffold; NMR {M 85.21
>2ksk_A Sugarcane defensin 5; csalphabeta motif, antimicrobial protein; NMR {Saccharum officinarum} Back     alignment and structure
Probab=99.81  E-value=7e-21  Score=110.98  Aligned_cols=51  Identities=43%  Similarity=1.093  Sum_probs=48.7

Q ss_pred             eeecccccccCCceeecCCCccchhHHhhh--cCCCceeecCC--CCceEEecCC
Q 034999           26 AAEARICESQSHRFKGPCVSKSNCAAVCQT--EGFHGGHCRGF--RRRCFCTKRC   76 (76)
Q Consensus        26 ~~ea~~C~~~s~~~~G~C~~~~~C~~~C~~--eg~~~G~C~~~--~~~C~C~~~C   76 (76)
                      ++||++|+++|++|+|+|++|++|+++|++  |||++|+|+++  .++|+|+++|
T Consensus         3 ~aEAr~C~s~S~~fkG~C~~~~nC~~vC~~~~Egf~~G~C~g~~~~rrC~Ctk~C   57 (71)
T 2ksk_A            3 PTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC   57 (71)
T ss_dssp             CCSSCCEEEECSSSCSSCCCHHHHHHHHHHHCSSCCEEEEECCSSSCEEEEEECC
T ss_pred             cccchhhhccCCCCeEEcCCCccHHHhccCcCCCCCCCCcCCCCCCceEEEECCc
Confidence            589999999999999999999999999999  99999999986  7899999998



>1n4n_A PHD1, floral defensin-like protein 1; cysteine-stabilised alpha-beta motif, fifth disulfide bond, plant protein; NMR {Petunia x hybrida} SCOP: g.3.7.5 Back     alignment and structure
>1mr4_A Nicotiana alata plant defensin 1 (NAD1); cysteine-stabilized alpha-beta motif, plant defensin fold, plant protein; NMR {Nicotiana tabacum} SCOP: g.3.7.5 PDB: 4aaz_A 4ab0_A Back     alignment and structure
>2lr3_A Defensin; fungal disease, antifungal agent, antifungal protein; NMR {Medicago truncatula} Back     alignment and structure
>1gps_A Gamma-1-P thionin; plant toxin; NMR {Triticum turgidum} SCOP: g.3.7.5 PDB: 1gpt_A Back     alignment and structure
>1ayj_A RS-AFP1, antifungal protein 1; fungicide, plant defensin, cysteine-stabilized ALFA/beta motif; HET: PCA; NMR {Raphanus sativus var} SCOP: g.3.7.5 Back     alignment and structure
>1ti5_A Plant defensin; insecticidal activity, MUNG bean, plant protein; NMR {Vigna radiata} Back     alignment and structure
>1jkz_A PSD1, defense-related peptide 1; plant defensin, Cys-rich, antifungal, antifungal protein; NMR {Pisum sativum} SCOP: g.3.7.5 Back     alignment and structure
>3psm_A Defensin, SPE10; dimer, antimicrobial protein; 0.98A {Pachyrhizus erosus} SCOP: g.3.7.5 PDB: 2gl1_A 2lj7_A Back     alignment and structure
>1bk8_A AH-AMP1, antimicrobial protein 1; plant defensin, cysteine-stabilized ALFA/ beta motif; NMR {Aesculus hippocastanum} SCOP: g.3.7.5 Back     alignment and structure
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Back     alignment and structure
>1myn_A Drosomycin; insect immunity, antifungal, csalpha-beta motif, signal protein; NMR {Drosophila melanogaster} SCOP: g.3.7.4 Back     alignment and structure
>1i2u_A Defensin heliomicin; alpha-beta protein, CSAB motif (cysteine stabilized alpha- helix beta-sheet motif), antifungal protein; NMR {Heliothis virescens} SCOP: g.3.7.4 PDB: 1ozz_A 1i2v_A 1p0a_A 1p00_A Back     alignment and structure
>2e3e_A Defensin, mutant DEF-BBB; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2e3f_A 2ny9_X Back     alignment and structure
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus} Back     alignment and structure
>2lr5_A Micasin; antimicrobial protein; NMR {Arthroderma otae} Back     alignment and structure
>1zfu_A Plectasin; defensin,antimicrobial peptide,cysteine stabilized alpha- beta motif, antimicrobial protein; NMR {Pseudoplectania nigrella} PDB: 3e7r_L 3e7u_X Back     alignment and structure
>1fjn_A Defensin MGD-1; cystine stabilized alpha-beta motif, antibacterial, disulfide bond, synthesis, antimicrobial protein; NMR {Synthetic} SCOP: g.3.7.3 Back     alignment and structure
>2e3g_A Defensin, mutant DEF-DAA; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2nz3_A Back     alignment and structure
>2b68_A Defensin; antibacterial peptide, cysteine-rich peptide, antimicrobial protein; NMR {Crassostrea gigas} Back     alignment and structure
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X Back     alignment and structure
>2koz_A Nasonin-1; alpha/beta structure, disulfide bonds, de novo protein; NMR {Synthetic construct} PDB: 2kp0_A Back     alignment and structure
>1t1t_A Kurtoxin, KTX; cysteine stabilized alpha-beta; NMR {Parabuthus transvaalicus} Back     alignment and structure
>2k9o_A VM24 scorpion toxin; ALFA/beta scaffold, beta sheet, ALFA helix, scorpion K+ toxin; NMR {Synthetic} Back     alignment and structure
>2i61_A Insect toxin 2; scorpion toxin, depressant, anti-insect, sodium channel modifer; 1.20A {Leiurus quinquestriatus hebraeus} Back     alignment and structure
>1nra_A Neurotoxin V, CSE-V; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 1nrb_A Back     alignment and structure
>1c49_A Toxin K-beta; scorpion toxin, potassium channels blockers, alpha-K toxin family, neurotoxin, solution structure; NMR {Pandinus imperator} SCOP: g.3.7.2 PDB: 2pta_A Back     alignment and structure
>1quz_A HSTX1 toxin; scorpion toxin, alpha beta, molecular modeling, potassium channel; NMR {Synthetic} SCOP: k.23.1.1 PDB: 1y2p_A 1wpd_A Back     alignment and structure
>1wt7_A BUTX-MTX; maurotoxin, butantoxin, scorpion toxin, K+ channels, molecular contacts, toxin affinity; NMR {Synthetic} SCOP: g.3.7.2 PDB: 2z3s_A Back     alignment and structure
>1wmt_A ISTX; neurotoxin, potassium channel blocker, solution structure, alpha-K toxin family, scorpion toxin; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>1qky_A PI7, toxin 7 from pandinus imperator; neurotoxin; NMR {Pandinus imperator} SCOP: g.3.7.2 Back     alignment and structure
>1n8m_A PI4, potassium channel blocking toxin 4; potassium channel blocker, disulfide bridge stabilized alpha beta motif; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1v56_A 1txm_A Back     alignment and structure
>2yeo_A Alpha-insect toxin lqhait; defense response; HET: DR8 DR0 EDO; 1.08A {Leiurus quinquestriatus hebraeus} PDB: 1lqh_A 1lqi_A 2asc_A* 2atb_A 1lqq_A 1t7e_A 1djt_A 1sn1_A 1zvg_A 1t7b_A 1zut_A 1t7a_A 1zu3_A 1chz_A 1zve_A 1zyv_A 1zyw_A 1omy_A 2e0h_A 2kbk_A ... Back     alignment and structure
>1dq7_A Neurotoxin; 2.20A {Mesobuthus tamulus} SCOP: g.3.7.1 PDB: 2a7t_A Back     alignment and structure
>1aho_A Toxin II; scorpion, AB initio phasing, neurotoxin; 0.96A {Androctonus australis} SCOP: g.3.7.1 PDB: 1ptx_A 4aei_A* 1seg_A 2kbh_A 2kbj_A Back     alignment and structure
>1snb_A Neurotoxin BMK M8; sodium channel inhibitor, scorpion; 1.90A {Mesobuthus martensii} SCOP: g.3.7.1 Back     alignment and structure
>1i6f_A Neurotoxin V-5, CSE-V5; scorpion, sodium channel, alpha helix, beta sheet, disulfide linkages; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 1i6g_A 1nh5_A Back     alignment and structure
>1kv0_A BMK M7, BMKM7, alpha-like toxin BMK-M7; non-prolyl CIS peptide bond, CIS/trans isomerization, dimeric structure, scorpion toxin; 1.40A {Mesobuthus martensii} SCOP: g.3.7.1 Back     alignment and structure
>1c55_A Butantoxin; structure; NMR {Tityus serrulatus} SCOP: g.3.7.2 PDB: 1c56_A Back     alignment and structure
>1agt_A Agitoxin 2; potassium channel blocker, neurotoxin; NMR {Leiurus quinquestriatus hebraeus} SCOP: g.3.7.2 PDB: 1xsw_A 2ktx_A 2uvs_A 3odv_A* 1ktx_A 2ck4_A 1sco_A 2k4u_A 1bkt_A 2ck5_A 2kir_A Back     alignment and structure
>1j5j_A BEKM-1 toxin; alpha-beta motif, cysteine-knot motif; NMR {Mesobuthus eupeus} SCOP: g.3.7.2 PDB: 1lgl_A Back     alignment and structure
>1wz5_A Potassium channel blocking toxin 1; ionic channel inhibitor; HET: ABA; NMR {Pandinus imperator} Back     alignment and structure
>1bmr_A LQH III alpha-like toxin; scorpion toxin, sodium channel inhibitor; NMR {Leiurus quinquestriatus hebraeus} SCOP: g.3.7.1 PDB: 1fh3_A Back     alignment and structure
>2axk_A Discrepin; scorpion toxin, A-current, K+-channel,; HET: PCA; NMR {Synthetic} Back     alignment and structure
>1pe4_A Neurotoxin CN11, CN12; scorpion toxin, sodium channels alpha toxin; NMR {Centruroides noxius} SCOP: g.3.7.1 Back     alignment and structure
>1hp2_A Tityustoxin K alpha; K+ channel, scorpion toxin, alpha-K toxin,; NMR {Tityus serrulatus} SCOP: g.3.7.2 Back     alignment and structure
>1npi_A Toxin VII, TSTX-VII; xcitatory neurotoxin; 1.16A {Tityus serrulatus} SCOP: g.3.7.1 PDB: 1b7d_A Back     alignment and structure
>1hly_A Hongotoxin 1; scorpion, centruroides limbatus HGTX1, potassium channel; NMR {Centruroides limbatus} SCOP: g.3.7.2 PDB: 1mtx_A 1sxm_A Back     alignment and structure
>2ljm_A CSS II, cssii, beta-mammal toxin CSS2; CS ALFA beta; NMR {Centruroides suffusus suffusus} Back     alignment and structure
>1m2s_A Toxin BMTX3, neurotoxin TX3; alpha/beta scaffold; NMR {Mesobuthus martensii} SCOP: g.3.7.2 Back     alignment and structure
>1big_A Toxin BMTX1; scorpion, neurotoxin, structure, large conductance potassium channel, voltage gated potassium channel; HET: PCA; NMR {Mesobuthus martensii} SCOP: g.3.7.2 PDB: 2bmt_A* Back     alignment and structure
>1b3c_A Protein (neurotoxin CSE-I); scorpion neurotoxin, NEW world toxin; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 2b3c_A Back     alignment and structure
>1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>2yc1_C Beta-mammal toxin CN2; immune system-toxin complex, scorpion toxin; 1.90A {Centruroides noxius hoffmann} PDB: 2ybr_C 1cn2_A 2li7_A Back     alignment and structure
>1cmr_A Charybdotoxin, alpha chimera; antagonist of nicotinic acetylcholine receptor, curaremimetic protein; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>1bah_A Charybdotoxin, chabii; neurotoxin, potassium channel inhibitor; HET: PCA ABA; NMR {Leiurus quinquestriatus} SCOP: g.3.7.2 PDB: 2a9h_E* 2crd_A* 1lir_A* Back     alignment and structure
>1t0z_A Insect neurotoxin; alpha-beta; 2.60A {Mesobuthus martensii} SCOP: g.3.7.1 PDB: 1wwn_A Back     alignment and structure
>2sn3_A Scorpion neurotoxin (variant 3); 1.20A {Centruroides exilicauda} SCOP: g.3.7.1 PDB: 1jza_A 1jzb_A 1vna_A 1vnb_A 2kja_A Back     alignment and structure
>1r1g_A Neurotoxin BMK37, BMBKTTX1; siras from S atoms, scorpion toxin, reductive dimethylation; HET: MLY; 1.72A {Synthetic} SCOP: g.3.7.2 PDB: 1q2k_A 3e8y_X Back     alignment and structure
>1bcg_A Toxin BJXTR-IT; excitatory neurotoxin; 2.10A {Hottentotta judaicus} SCOP: g.3.7.1 Back     alignment and structure
>1ne5_A Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stranded beta-sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1px9_A Back     alignment and structure
>2ddl_A Leiurotoxin, LEI4P; scorpion toxin analog; NMR {Synthetic} Back     alignment and structure
>2lt8_A Eurocin; A/B-fold, cysteine stabilised, antimicrobial protein; NMR {Eurotium amstelodami} Back     alignment and structure
>1tsk_A TS KAPA; scorpion, toxin, potassium channel, neurotoxin; NMR {Tityus serrulatus} SCOP: g.3.7.2 Back     alignment and structure
>1brz_A Brazzein; sweet protein, cysteine-stabilized alpha-beta; HET: PCA; NMR {Pentadiplandra brazzeana} SCOP: g.3.7.5 PDB: 2brz_A* 2kgq_A 2kyq_A Back     alignment and structure
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5 Back     alignment and structure
>1pvz_A K+ toxin-like peptide; alpha/beta scaffold; NMR {Mesobuthus martensii} SCOP: g.3.7.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 76
d1mr4a_47 g.3.7.5 (A:) Floral defensin 1 {Common tobacco (Ni 6e-21
d1gpsa_47 g.3.7.5 (A:) gamma-Thionin {English wheat (Triticu 2e-20
d1n4na_47 g.3.7.5 (A:) Floral defensin 1 {Garden petunia (Pe 8e-20
d1jkza_46 g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum 4e-05
>d1mr4a_ g.3.7.5 (A:) Floral defensin 1 {Common tobacco (Nicotiana tabacum), NAD1 [TaxId: 4097]} Length = 47 Back     information, alignment and structure

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Plant defensins
domain: Floral defensin 1
species: Common tobacco (Nicotiana tabacum), NAD1 [TaxId: 4097]
 Score = 75.1 bits (185), Expect = 6e-21
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 30 RICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC 76
          R C+++S+ F G C++K  C   C +E F  GHC    RRC CTK C
Sbjct: 1  RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC 47


>d1gpsa_ g.3.7.5 (A:) gamma-Thionin {English wheat (Triticum turgidum) [TaxId: 4571]} Length = 47 Back     information, alignment and structure
>d1n4na_ g.3.7.5 (A:) Floral defensin 1 {Garden petunia (Petunia x hybrida), PHD1 [TaxId: 4102]} Length = 47 Back     information, alignment and structure
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 3888]} Length = 46 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query76
d1mr4a_47 Floral defensin 1 {Common tobacco (Nicotiana tabac 99.8
d1gpsa_47 gamma-Thionin {English wheat (Triticum turgidum) [ 99.8
d1n4na_47 Floral defensin 1 {Garden petunia (Petunia x hybri 99.79
d1ayja_51 Antifungal protein 1 (RS-AFP1) {Radish (Raphanus s 99.61
d1jkza_46 Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 388 99.52
d1bk8a_50 Antimicrobial protein 1 (AH-AMP1) {Horse chestnut 99.51
d1myna_44 Drosomycin {Fruit fly (Drosophila melanogaster) [T 98.67
d1fjna_39 Defensin MGD-1 {Mediterranean mussel (Mytilus gall 97.91
d1ozza_44 Defensin ARD1 {Archaeoprepona demophon [TaxId: 191 97.86
d1icaa_40 Defensin A {Flesh fly (Phormia terranovae) [TaxId: 97.41
d1nraa_63 Scorpion toxin {Centruroides sculpturatus, variant 96.79
d1kv0a_66 Tx10 alpha-like toxin {Chinese scorpion (Buthus ma 96.69
d2asca165 alpha toxin {Scorpion (Leiurus quinquestriatus heb 96.66
d1snba_64 Scorpion toxin {Scorpion (Buthus martensii), toxin 96.63
d1pjva_32 Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId 96.62
d1nh5a_60 Scorpion toxin {Bark scorpion (Centruroides sculpt 96.6
d1ahoa_64 Scorpion toxin {Scorpion (Androctonus australis he 96.39
d1dq7a_64 Scorpion toxin {Indian red scorpion (Buthus tamulu 96.25
d1r1ga_31 Neurotoxin bmk37 {Chinese scorpion (Buthus martens 96.12
d1npia_61 Scorpion toxin {Brazilian scorpion (Tityus serrula 96.04
d1bmra_67 LQH III alpha-like toxin, LQH {Hebraei scorpion (L 96.0
d1t0za_72 Scorpion toxin {Scorpion (Buthus martensii), BmK I 94.35
d1px9a_42 Ergtoxin (HERG specific toxin CnErg1) {Scorpion (C 94.13
d2b3ca_64 Scorpion toxin {Centruroides sculpturatus, beta [T 93.76
d1bcga_74 Scorpion toxin {Scorpion (Buthotus judaicus), BJXT 93.75
d2sn3a_65 Scorpion toxin {Centruroides sculpturatus, variant 93.73
d2ptaa_35 Pandinus toxin {Emperor scorpion (Pandinus imperat 93.54
d1cn2a_66 Scorpion toxin {Mexican scorpion (Centruroides nox 93.32
d1m2sa_37 Bmtx3 {Buthus martensii karsch [TaxId: 34649]} 92.06
d1j5ja_36 Bekm-1 {Lesser asian scorpion (Buthus eupeus) [Tax 91.51
d1pe4a_67 Scorpion toxin {Mexican scorpion (Centruroides nox 91.32
d1jxca_68 Trypsin/chymotrypsin inhibitor ATT {Mouse-ear cres 91.02
d2crda_37 Charybdotoxin {Scorpion (Leiurus quinquestriatus h 90.7
d1wpda_34 Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 5395 88.99
d1biga_37 Bmtx1 {Buthus martensii [TaxId: 34649]} 88.27
d1tska_35 Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxI 88.16
d1agta_38 Agitoxin {Scorpion (Leiurus quinquestriatus hebrae 87.7
d1hp2a_37 alpha-KTX, K+-channel blocker {Brazilian scorpion 85.83
d1cmra_31 Charybdotoxin {Scorpion (Leiurus quinquestriatus h 85.53
d1c55a_40 Butantoxin {Brazilian scorpion (Tityus serrulatus) 84.69
d1jlza_26 alpha-KTX, K+-channel blocker {Scorpion (Tityus ca 84.21
d1wmta_41 Istx {Scorpion (Opisthacanthus madagascariensis) [ 83.72
d1wt7a_41 Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 5395 80.49
>d1mr4a_ g.3.7.5 (A:) Floral defensin 1 {Common tobacco (Nicotiana tabacum), NAD1 [TaxId: 4097]} Back     information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Plant defensins
domain: Floral defensin 1
species: Common tobacco (Nicotiana tabacum), NAD1 [TaxId: 4097]
Probab=99.80  E-value=6.3e-21  Score=101.68  Aligned_cols=47  Identities=45%  Similarity=1.088  Sum_probs=45.5

Q ss_pred             ccccccCCceeecCCCccchhHHhhhcCCCceeecCCCCceEEecCC
Q 034999           30 RICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC   76 (76)
Q Consensus        30 ~~C~~~s~~~~G~C~~~~~C~~~C~~eg~~~G~C~~~~~~C~C~~~C   76 (76)
                      ++|+++|++|+|+|+++++|+++|++|||++|+|.+|.++|+|++||
T Consensus         1 R~C~s~S~~FkG~C~~~~nCa~vC~~EgF~gG~C~g~~RrC~Ctk~C   47 (47)
T d1mr4a_           1 RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC   47 (47)
T ss_dssp             CCEEEECSSCCSCCCCHHHHHHHHHHTTCSEEEECTTSSSEEEEECC
T ss_pred             CcccccCCCceeeecCCccHHHHHhhCCCCCCEecCcccceeEeCCC
Confidence            57999999999999999999999999999999999999999999998



>d1gpsa_ g.3.7.5 (A:) gamma-Thionin {English wheat (Triticum turgidum) [TaxId: 4571]} Back     information, alignment and structure
>d1n4na_ g.3.7.5 (A:) Floral defensin 1 {Garden petunia (Petunia x hybrida), PHD1 [TaxId: 4102]} Back     information, alignment and structure
>d1ayja_ g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radish (Raphanus sativus) [TaxId: 3726]} Back     information, alignment and structure
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]} Back     information, alignment and structure
>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fjna_ g.3.7.3 (A:) Defensin MGD-1 {Mediterranean mussel (Mytilus galloprovincialis) [TaxId: 29158]} Back     information, alignment and structure
>d1ozza_ g.3.7.4 (A:) Defensin ARD1 {Archaeoprepona demophon [TaxId: 191427]} Back     information, alignment and structure
>d1icaa_ g.3.7.4 (A:) Defensin A {Flesh fly (Phormia terranovae) [TaxId: 34676]} Back     information, alignment and structure
>d1nraa_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, variant V [TaxId: 218467]} Back     information, alignment and structure
>d1kv0a_ g.3.7.1 (A:) Tx10 alpha-like toxin {Chinese scorpion (Buthus martensii) [TaxId: 34649]} Back     information, alignment and structure
>d2asca1 g.3.7.1 (A:1-65) alpha toxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1snba_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthus martensii), toxin m8 [TaxId: 34649]} Back     information, alignment and structure
>d1pjva_ g.3.7.2 (A:) Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d1nh5a_ g.3.7.1 (A:) Scorpion toxin {Bark scorpion (Centruroides sculpturatus), cse-v5 [TaxId: 218467]} Back     information, alignment and structure
>d1ahoa_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Androctonus australis hector), Toxin II [TaxId: 70175]} Back     information, alignment and structure
>d1dq7a_ g.3.7.1 (A:) Scorpion toxin {Indian red scorpion (Buthus tamulus), neurotoxin [TaxId: 34647]} Back     information, alignment and structure
>d1r1ga_ g.3.7.2 (A:) Neurotoxin bmk37 {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]} Back     information, alignment and structure
>d1npia_ g.3.7.1 (A:) Scorpion toxin {Brazilian scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1bmra_ g.3.7.1 (A:) LQH III alpha-like toxin, LQH {Hebraei scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1t0za_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthus martensii), BmK IT-AP [TaxId: 34649]} Back     information, alignment and structure
>d1px9a_ g.3.7.2 (A:) Ergtoxin (HERG specific toxin CnErg1) {Scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d2b3ca_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, beta [TaxId: 218467]} Back     information, alignment and structure
>d1bcga_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthotus judaicus), BJXTR-IT [TaxId: 6863]} Back     information, alignment and structure
>d2sn3a_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, variant 3 [TaxId: 218467]} Back     information, alignment and structure
>d2ptaa_ g.3.7.2 (A:) Pandinus toxin {Emperor scorpion (Pandinus imperator), PITX-Ka [TaxId: 55084]} Back     information, alignment and structure
>d1cn2a_ g.3.7.1 (A:) Scorpion toxin {Mexican scorpion (Centruroides noxius), toxin II [TaxId: 6878]} Back     information, alignment and structure
>d1m2sa_ g.3.7.2 (A:) Bmtx3 {Buthus martensii karsch [TaxId: 34649]} Back     information, alignment and structure
>d1j5ja_ g.3.7.2 (A:) Bekm-1 {Lesser asian scorpion (Buthus eupeus) [TaxId: 34648]} Back     information, alignment and structure
>d1pe4a_ g.3.7.1 (A:) Scorpion toxin {Mexican scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d1jxca_ g.3.7.5 (A:) Trypsin/chymotrypsin inhibitor ATT {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2crda_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1wpda_ g.3.7.2 (A:) Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 53956]} Back     information, alignment and structure
>d1biga_ g.3.7.2 (A:) Bmtx1 {Buthus martensii [TaxId: 34649]} Back     information, alignment and structure
>d1tska_ g.3.7.2 (A:) Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1agta_ g.3.7.2 (A:) Agitoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1hp2a_ g.3.7.2 (A:) alpha-KTX, K+-channel blocker {Brazilian scorpion (Tityus serrulatus), Tstx-k alpha [TaxId: 6887]} Back     information, alignment and structure
>d1cmra_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1c55a_ g.3.7.2 (A:) Butantoxin {Brazilian scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1jlza_ g.3.7.2 (A:) alpha-KTX, K+-channel blocker {Scorpion (Tityus cambridgei) [TaxId: 184226]} Back     information, alignment and structure
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]} Back     information, alignment and structure
>d1wt7a_ g.3.7.2 (A:) Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 53956]} Back     information, alignment and structure