Citrus Sinensis ID: 035000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mapkpitspvpdawyptLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV
Flexible Loop (DISEMBL)
mapkpitspvpdaWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV
Low Complexity Region (SEG)
MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVasvflgfgslflllasgvYV
Disordered region (IsUnstruct)
**********PDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVY*
Disordered Region (DISOPRED)
***KPIT*PVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV
Disordered Region (DISEMBL)
MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV
Disordered Region (DISPRO)
*****ITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV
Transmembrane Helix (TMHMM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
P61166	79	Transmembrane protein 258	yes	no	0.921	0.886	0.571	7e-15
P61165	79	Transmembrane protein 258	yes	no	0.921	0.886	0.571	7e-15
Q76LT9	79	Transmembrane protein 258	yes	no	0.921	0.886	0.571	7e-15
Q6DDB3	79	Transmembrane protein 258	yes	no	0.921	0.886	0.571	9e-15
Q6GP81	79	Transmembrane protein 258	N/A	no	0.921	0.886	0.571	9e-15
Q32P84	79	Transmembrane protein 258	yes	no	0.921	0.886	0.557	9e-15
Q6PBS6	79	Transmembrane protein 258	yes	no	0.921	0.886	0.528	4e-13
Q965T1	79	Transmembrane protein 258	yes	no	0.921	0.886	0.5	2e-11
Q9VVA8	78	Transmembrane protein 258	yes	no	0.907	0.884	0.485	7e-09
Q60WL8	79	Transmembrane protein 258	N/A	no	0.907	0.873	0.434	1e-06

>sp|P61166|TM258_MOUSE Transmembrane protein 258 OS=Mus musculus GN=Tmem258 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 52/70 (74%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVL 69

Query: 67 FLLLASGVYV 76
          FLLL  G+YV
Sbjct: 70 FLLLWVGIYV 79

Mus musculus (taxid: 10090)

>sp|P61165|TM258_HUMAN Transmembrane protein 258 OS=Homo sapiens GN=TMEM258 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 52/70 (74%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVL 69

Query: 67 FLLLASGVYV 76
          FLLL  G+YV
Sbjct: 70 FLLLWVGIYV 79

Homo sapiens (taxid: 9606)

>sp|Q76LT9|TM258_CHICK Transmembrane protein 258 OS=Gallus gallus GN=TMEM258 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 52/70 (74%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVL 69

Query: 67 FLLLASGVYV 76
          FLLL  G+YV
Sbjct: 70 FLLLWVGIYV 79

Gallus gallus (taxid: 9031)

>sp|Q6DDB3|TM258_XENTR Transmembrane protein 258 OS=Xenopus tropicalis GN=tmem258 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 52/70 (74%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDVYKELLISLVASLFMGFGVL 69

Query: 67 FLLLASGVYV 76
          FLLL  G+YV
Sbjct: 70 FLLLWVGIYV 79

Xenopus tropicalis (taxid: 8364)

>sp|Q6GP81|TM258_XENLA Transmembrane protein 258 OS=Xenopus laevis GN=tmem258 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 52/70 (74%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDVYKELLISLVASLFMGFGVL 69

Query: 67 FLLLASGVYV 76
          FLLL  G+YV
Sbjct: 70 FLLLWVGIYV 79

Xenopus laevis (taxid: 8355)

>sp|Q32P84|TM258_BOVIN Transmembrane protein 258 OS=Bos taurus GN=TMEM258 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVL 69

Query: 67 FLLLASGVYV 76
          FLLL  G+Y+
Sbjct: 70 FLLLWVGIYI 79

Bos taurus (taxid: 9913)

>sp|Q6PBS6|TM258_DANRE Transmembrane protein 258 OS=Danio rerio GN=tmem258 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          TSPV  A +P L+V +LAIG+F  A FF+YE TS++  R + KEL+   VAS+F+GFG  
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFKAWFFVYEVTSTKYTRDVYKELLIALVASLFMGFGVH 69

Query: 67 FLLLASGVYV 76
          FLLL  G++V
Sbjct: 70 FLLLWVGIFV 79

Danio rerio (taxid: 7955)

>sp|Q965T1|TM258_CAEEL Transmembrane protein 258 homolog OS=Caenorhabditis elegans GN=Y57E12AM.1 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          T+PV  A  P L+ F+  +GL + A+F + + TS++ NR+L KEL   A +SVFLGFGS+
Sbjct: 10 TAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATSSVFLGFGSV 69

Query: 67 FLLLASGVYV 76
          FLLL  G+YV
Sbjct: 70 FLLLWVGIYV 79

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VVA8|TM258_DROME Transmembrane protein 258 homolog OS=Drosophila melanogaster GN=CG9669 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 8  SPVPDAWYPTLSVFMLAIGLFVTASFFIYEAT-SSRQNRSLGKELITGAVASVFLGFGSL 66
          SPV  A +P L+  +L IG F TA FFI+  +  S +  +L KEL+    AS+FLGFG +
Sbjct: 9  SPVNPAVFPHLATVLLVIGTFFTAWFFIFVVSRKSSKESTLIKELLISLCASIFLGFGIV 68

Query: 67 FLLLASGVYV 76
          FLLL  G+YV
Sbjct: 69 FLLLTVGIYV 78

Drosophila melanogaster (taxid: 7227)

>sp|Q60WL8|TM258_CAEBR Transmembrane protein 258 homolog OS=Caenorhabditis briggsae GN=CBG19073 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 47/69 (68%)

Query: 8  SPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLF 67
          +PV  +  P L+  +  +GL + A+F + + TS++ NR++ KEL   A +S+FLGFGS+F
Sbjct: 11 APVHFSSLPLLATVLCGVGLLLLAAFTMLQVTSTKYNRNVFKELFIAATSSIFLGFGSVF 70

Query: 68 LLLASGVYV 76
          LLL  G+YV
Sbjct: 71 LLLWVGIYV 79

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
326528217	76	predicted protein [Hordeum vulgare subsp	1.0	1.0	0.723	7e-25
118485365	78	unknown [Populus trichocarpa]	0.934	0.910	0.816	1e-24
115468596	76	Os06g0567000 [Oryza sativa Japonica Grou	1.0	1.0	0.75	2e-24
242093376	76	hypothetical protein SORBIDRAFT_10g02241	1.0	1.0	0.75	3e-24
357124075	76	PREDICTED: UPF0197 transmembrane protein	1.0	1.0	0.710	1e-23
413943837	76	hypothetical protein ZEAMMB73_019756 [Ze	1.0	1.0	0.723	4e-23
195610454	76	hypothetical protein [Zea mays]	1.0	1.0	0.723	4e-23
388492390	76	unknown [Lotus japonicus]	1.0	1.0	0.881	7e-23
356561951	76	PREDICTED: UPF0197 transmembrane protein	1.0	1.0	0.881	4e-22
149391911	70	unknown [Oryza sativa Indica Group]	0.921	1.0	0.757	4e-22

>gi|326528217|dbj|BAJ93290.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326529999|dbj|BAK08279.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 68/76 (89%)

Query: 1  MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
          MA K I+SPVP  WYPTL+V M+++GL +TASFFIYEAT+SR+NRSL KE++T ++ASVF
Sbjct: 1  MAAKAISSPVPVEWYPTLAVVMVSVGLMLTASFFIYEATTSRRNRSLAKEMVTASIASVF 60

Query: 61 LGFGSLFLLLASGVYV 76
          LGFGSLF+LLASGVYV
Sbjct: 61 LGFGSLFVLLASGVYV 76

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485365|gb|ABK94540.1| unknown [Populus trichocarpa]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 65/71 (91%)

Query: 6  ITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGS 65
          ITSPVP  WYPTL++FMLAIGL V+ASFFIYEATSSR++RSL KEL TGA+AS FLGFGS
Sbjct: 8  ITSPVPVTWYPTLAIFMLAIGLMVSASFFIYEATSSRRSRSLAKELTTGALASFFLGFGS 67

Query: 66 LFLLLASGVYV 76
          LF+LLASGVYV
Sbjct: 68 LFMLLASGVYV 78

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115468596|ref|NP_001057897.1| Os06g0567000 [Oryza sativa Japonica Group] gi|53793323|dbj|BAD54544.1| unknown protein [Oryza sativa Japonica Group] gi|113595937|dbj|BAF19811.1| Os06g0567000 [Oryza sativa Japonica Group] gi|125555771|gb|EAZ01377.1| hypothetical protein OsI_23410 [Oryza sativa Indica Group] gi|125597617|gb|EAZ37397.1| hypothetical protein OsJ_21735 [Oryza sativa Japonica Group] gi|215768204|dbj|BAH00433.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 65/76 (85%)

Query: 1  MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
          MA K I+SPVP  WYPTL+V M+A+GL  TASFFIYEATSSR+NRSL KE+ T  +ASVF
Sbjct: 1  MAAKAISSPVPVDWYPTLAVVMVAVGLMFTASFFIYEATSSRRNRSLAKEIATATIASVF 60

Query: 61 LGFGSLFLLLASGVYV 76
          LGFGSLF+LLASGVYV
Sbjct: 61 LGFGSLFVLLASGVYV 76

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093376|ref|XP_002437178.1| hypothetical protein SORBIDRAFT_10g022410 [Sorghum bicolor] gi|241915401|gb|EER88545.1| hypothetical protein SORBIDRAFT_10g022410 [Sorghum bicolor]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 66/76 (86%)

Query: 1  MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
          MA K I+SPVP  WYPTL+V M+++GL  TASFFIYEATSSR++RSL KE+ T AVASVF
Sbjct: 1  MAAKAISSPVPVEWYPTLAVLMVSVGLMFTASFFIYEATSSRRSRSLAKEIATAAVASVF 60

Query: 61 LGFGSLFLLLASGVYV 76
          LGFGSLF+LLASGVYV
Sbjct: 61 LGFGSLFVLLASGVYV 76

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357124075|ref|XP_003563732.1| PREDICTED: UPF0197 transmembrane protein Y57E12AM.1-like [Brachypodium distachyon]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 66/76 (86%)

Query: 1  MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
          MA K I+SPVP  WYPTL+V  +++GL +TASFFIYEAT+SR+NRSL KE++T + ASVF
Sbjct: 1  MAAKAISSPVPVEWYPTLAVVTVSVGLMLTASFFIYEATTSRRNRSLAKEIVTASTASVF 60

Query: 61 LGFGSLFLLLASGVYV 76
          LGFGSLF+LLASGVYV
Sbjct: 61 LGFGSLFVLLASGVYV 76

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413943837|gb|AFW76486.1| hypothetical protein ZEAMMB73_019756 [Zea mays]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 65/76 (85%)

Query: 1  MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
          MA K I+SPVP  WYPTL+V M+++GL  TASFFIYEATSS+++RSL KE+ T AVASV 
Sbjct: 1  MAAKAISSPVPVEWYPTLAVVMVSVGLMFTASFFIYEATSSKRSRSLAKEITTAAVASVL 60

Query: 61 LGFGSLFLLLASGVYV 76
          LGFGSLF+LLASGVYV
Sbjct: 61 LGFGSLFVLLASGVYV 76

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195610454|gb|ACG27057.1| hypothetical protein [Zea mays]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 65/76 (85%)

Query: 1  MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
          MA K I+SPVP  WY TL+V M+++GL  TASFFIYEATSS+++RSL KE+ T AVASVF
Sbjct: 1  MAAKAISSPVPVEWYSTLAVVMVSVGLMFTASFFIYEATSSKRSRSLAKEITTAAVASVF 60

Query: 61 LGFGSLFLLLASGVYV 76
          LGFGSLF+LLASGVYV
Sbjct: 61 LGFGSLFVLLASGVYV 76

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492390|gb|AFK34261.1| unknown [Lotus japonicus]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 70/76 (92%)

Query: 1  MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
          MAPKPITSPVPDAWYPTLSVF LAIGL +TASFFIYEATSSR+ RSL +EL TGAVASVF
Sbjct: 1  MAPKPITSPVPDAWYPTLSVFTLAIGLVLTASFFIYEATSSRKTRSLAQELTTGAVASVF 60

Query: 61 LGFGSLFLLLASGVYV 76
          LGFG LFLLLASGVYV
Sbjct: 61 LGFGPLFLLLASGVYV 76

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561951|ref|XP_003549239.1| PREDICTED: UPF0197 transmembrane protein C11orf10 [Glycine max]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 72/76 (94%)

Query: 1  MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
          MAPKPITSPVPD+WYPTLSVF LAIGL +TASFFIYEATSSR++RSL +EL TGAVASVF
Sbjct: 1  MAPKPITSPVPDSWYPTLSVFTLAIGLVLTASFFIYEATSSRKSRSLVQELTTGAVASVF 60

Query: 61 LGFGSLFLLLASGVYV 76
          LGFGSLFLLLASGVYV
Sbjct: 61 LGFGSLFLLLASGVYV 76

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149391911|gb|ABR25858.1| unknown [Oryza sativa Indica Group]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 61/70 (87%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
          +SPVP  WYPTL+V M+A+GL  TASFFIYEATSSR+NRSL KE+ T  +ASVFLGFGSL
Sbjct: 1  SSPVPVDWYPTLAVVMVAVGLMFTASFFIYEATSSRRNRSLAKEIATATIASVFLGFGSL 60

Query: 67 FLLLASGVYV 76
          F+LLASGVYV
Sbjct: 61 FVLLASGVYV 70

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:505006534	98	AT4G29735 "AT4G29735" [Arabido	0.486	0.377	0.729	1.6e-16
UNIPROTKB|Q76LT9	79	TMEM258 "Transmembrane protein	0.657	0.632	0.52	2.6e-08
UNIPROTKB|Q32P84	79	TMEM258 "Transmembrane protein	0.657	0.632	0.52	2.6e-08
UNIPROTKB|P61165	79	TMEM258 "Transmembrane protein	0.657	0.632	0.52	2.6e-08
MGI|MGI:1916288	79	Tmem258 "transmembrane protein	0.657	0.632	0.52	2.6e-08
ZFIN|ZDB-GENE-040426-1739	79	tmem258 "transmembrane protein	0.657	0.632	0.5	1.4e-07
WB|WBGene00021960	79	Y57E12AM.1 [Caenorhabditis ele	0.644	0.620	0.408	8.1e-05

TAIR|locus:505006534 AT4G29735 "AT4G29735" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 27/37 (72%), Positives = 29/37 (78%)

Query:     1 MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYE 37
             MA KPI SP+P A YPTLSVF LAIGL +TA FFI E
Sbjct:     1 MAAKPIASPIPVALYPTLSVFTLAIGLVITAIFFIVE 37

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q76LT9 TMEM258 "Transmembrane protein 258" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query:     7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAV 56
             TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   V
Sbjct:    10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLV 59

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q32P84 TMEM258 "Transmembrane protein 258" [Bos taurus (taxid:9913)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query:     7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAV 56
             TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   V
Sbjct:    10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLV 59

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P61165 TMEM258 "Transmembrane protein 258" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query:     7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAV 56
             TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   V
Sbjct:    10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLV 59

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1916288 Tmem258 "transmembrane protein 258" [Mus musculus (taxid:10090)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query:     7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAV 56
             TSPV  A +P L+V +LAIG+F TA FF+YE TS++  R + KEL+   V
Sbjct:    10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLV 59

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-1739 tmem258 "transmembrane protein 258" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 25/50 (50%), Positives = 34/50 (68%)

Query:     7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAV 56
             TSPV  A +P L+V +LAIG+F  A FF+YE TS++  R + KEL+   V
Sbjct:    10 TSPVNPAVFPHLTVVLLAIGMFFKAWFFVYEVTSTKYTRDVYKELLIALV 59

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00021960 Y57E12AM.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query:     7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGA 55
             T+PV  A  P L+ F+  +GL + A+F + + TS++ NR+L KEL   A
Sbjct:    10 TAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAA 58


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        58   0.00091  102 3  11 22  0.45    27
                                                     29  0.47    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  431 (46 KB)
  Total size of DFA:  72 KB (2061 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.41u 0.18s 7.59t   Elapsed:  00:00:01
  Total cpu time:  7.41u 0.18s 7.59t   Elapsed:  00:00:01
  Start:  Fri May 10 04:34:11 2013   End:  Fri May 10 04:34:12 2013

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61165	TM258_HUMAN	No assigned EC number	0.5714	0.9210	0.8860	yes	no
P61166	TM258_MOUSE	No assigned EC number	0.5714	0.9210	0.8860	yes	no
Q32P84	TM258_BOVIN	No assigned EC number	0.5571	0.9210	0.8860	yes	no
Q965T1	TM258_CAEEL	No assigned EC number	0.5	0.9210	0.8860	yes	no
Q6DDB3	TM258_XENTR	No assigned EC number	0.5714	0.9210	0.8860	yes	no
Q76LT9	TM258_CHICK	No assigned EC number	0.5714	0.9210	0.8860	yes	no
Q6GP81	TM258_XENLA	No assigned EC number	0.5714	0.9210	0.8860	N/A	no
Q6PBS6	TM258_DANRE	No assigned EC number	0.5285	0.9210	0.8860	yes	no
Q9VVA8	TM258_DROME	No assigned EC number	0.4857	0.9078	0.8846	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsI_23410	Os06g0567000 (147 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
	DAD1	Defender against cell death 1 (DAD-1) (Defender against apoptotic death 1 protein); Possesses c [...] (114 aa)				•					0.487

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	76
pfam05251	77	pfam05251, UPF0197, Uncharacterized protein family	5e-19

>gnl|CDD|147446 pfam05251, UPF0197, Uncharacterized protein family (UPF0197)

 Score = 72.9 bits (179), Expect = 5e-19
 Identities = 39/70 (55%), Positives = 48/70 (68%)

Query: 7  TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
           SPV  A +P L+  +L IG F TA FF+YE TS++  R L KEL+   VAS+FLGFG L
Sbjct: 8  VSPVNPAVFPHLATVLLGIGTFFTAWFFVYEVTSTKYERVLFKELLISLVASIFLGFGIL 67

Query: 67 FLLLASGVYV 76
          FLLL  G+YV
Sbjct: 68 FLLLWVGIYV 77

This family of proteins is functionally uncharacterized. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
PF05251	77	UPF0197: Uncharacterised protein family (UPF0197);	100.0
KOG4452	79	consensus Predicted membrane protein [Function unk	100.0

>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein

Probab=100.00  E-value=4.5e-37  Score=192.73  Aligned_cols=74  Identities=62%  Similarity=0.961  Sum_probs=72.8

Q ss_pred             CCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 035000            3 PKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV   76 (76)
Q Consensus         3 ~~py~~pV~~~~~p~la~~lL~igl~~~~~F~i~~vt~~k~~r~l~ke~~la~~ASlflGfG~vFl~l~~GVYV   76 (76)
                      -+||+|||||+.||++|+++|+||+++++||++||+|++|++||+.||+++|++||+|+|||++|++||+||||
T Consensus         4 m~~Y~sPV~p~~~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~flGfG~lFLlL~vGIYV   77 (77)
T PF05251_consen    4 MSRYTSPVNPALYPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFLGFGSLFLLLWVGIYV   77 (77)
T ss_pred             ccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHhHHHHHHHHHCCCcC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999998

>KOG4452 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=7.2e-35  Score=181.07  Aligned_cols=73  Identities=55%  Similarity=0.850  Sum_probs=72.2

Q ss_pred             CCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 035000            4 KPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLLLASGVYV   76 (76)
Q Consensus         4 ~py~~pV~~~~~p~la~~lL~igl~~~~~F~i~~vt~~k~~r~l~ke~~la~~ASlflGfG~vFl~l~~GVYV   76 (76)
                      +||++||||+.+||++.+||.||+++++||+++|||++|+||+++||+++++.||+|+|||++|+++|+||||
T Consensus         7 ~RYtsPVNpAvfPhLttvLl~iG~fftAwFf~~~VtStKy~r~l~KELlIsl~aSvFlGFG~vFLLLwVGIYV   79 (79)
T KOG4452|consen    7 NRYTSPVNPAVFPHLTTVLLGIGLFFTAWFFMIQVTSTKYNRNLLKELLISLTASVFLGFGSVFLLLWVGIYV   79 (79)
T ss_pred             hhhcCCCChhHhHHHHHHHHHHHHHHHHHHHheeEecchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00