Citrus Sinensis ID: 035011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYAPGP
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccEEEHHHccccHHHHHHHHHHHHHHHcHHEEEEEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccHHHHEEcccccHHHHHHHHHHHHHHcccEEEEEEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
MPSCCEICCEILIAIllpplgvclkhgcctvEFCICLLLTILGYVPGIIYALYAIVFVdrdeyfdeyrrplyapgp
Flexible Loop (DISEMBL)
MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYAPGP
Low Complexity Region (SEG)
MPScceicceiliaillpplGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYAPGP
Disordered region (IsUnstruct)
***CCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPL*****
Disordered Region (DISOPRED)
****CEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR****************
Disordered Region (DISEMBL)
MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYAPGP
Disordered Region (DISPRO)
**SCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLY****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYAPGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q9SUI0	74	UPF0057 membrane protein	no	no	0.960	0.986	0.794	9e-27
O82232	75	UPF0057 membrane protein	no	no	0.947	0.96	0.791	3e-26
Q9M095	73	UPF0057 membrane protein	no	no	0.947	0.986	0.712	1e-19
Q9LRI7	72	Hydrophobic protein OSR8	yes	no	0.776	0.819	0.711	7e-17
Q0DKW8	55	Hydrophobic protein LTI6B	no	no	0.631	0.872	0.734	2e-10
A2Y075	55	Hydrophobic protein LTI6B	N/A	no	0.631	0.872	0.734	2e-10
Q9ZNS6	54	Hydrophobic protein RCI2B	no	no	0.592	0.833	0.695	2e-09
Q8H5T6	56	Hydrophobic protein LTI6A	no	no	0.710	0.964	0.563	2e-09
Q9ZNQ7	54	Hydrophobic protein RCI2A	no	no	0.592	0.833	0.695	2e-09
Q9ARD5	54	Low temperature-induced p	N/A	no	0.605	0.851	0.638	3e-09

>sp|Q9SUI0|RC24_ARATH UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 65/73 (89%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEI CEI+IAILLPPLGVC + GCCTVEF ICL+LTILGYVPGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DEYFDEYRRPLYA 73
          +EYFDEYRRP+Y+
Sbjct: 61 EEYFDEYRRPIYS 73

Arabidopsis thaliana (taxid: 3702)

>sp|O82232|RC22_ARATH UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=3 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 65/72 (90%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          M S CE+CCEI IAILLPP+GVCL+HGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DEYFDEYRRPLY 72
          DEYFDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M095|RC23_ARATH UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          M S  E+ CEILIAILLPPLGVCLK GCCTVEF ICL+LTILGY+PGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 DEYFDEYRRPLYA 73
           E   E   PL +
Sbjct: 61 -EGSTELGAPLNS 72

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRI7|OSR8_ORYSJ Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYR 68
          EIL+AI+LPPLGV L+ GCC++EFCICLLLTILGYVPGIIYA+Y +V +D D+Y  EY 
Sbjct: 11 EILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQYQREYH 69

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DKW8|LTI6B_ORYSJ Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 8  CCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
          C +ILIAI+LPPLGV LK GC   EF ICLLLT LGY+PGIIYA+YAI 
Sbjct: 7  CIDILIAIILPPLGVFLKFGCGH-EFWICLLLTFLGYIPGIIYAIYAIT 54

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y075|LTI6B_ORYSI Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 8  CCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
          C +ILIAI+LPPLGV LK GC   EF ICLLLT LGY+PGIIYA+YAI 
Sbjct: 7  CIDILIAIILPPLGVFLKFGCGH-EFWICLLLTFLGYIPGIIYAIYAIT 54

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9ZNS6|RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 39/46 (84%), Gaps = 1/46 (2%)

Query: 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          EI++AI+LPPLGV LK GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct: 8  EIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H5T6|LTI6A_ORYSJ Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          M      C +I++AI+LPPLGV  K GC  +EF ICLLLT  GY+PGIIYA++ I
Sbjct: 1  MADSTATCIDIILAIILPPLGVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVI 54

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 40/46 (86%), Gaps = 1/46 (2%)

Query: 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          +I+IAILLPPLGV L+ GC  VEF ICL+LT+LGY+PGIIYA+Y +
Sbjct: 8  DIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ARD5|LT02_HORVU Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 41/47 (87%), Gaps = 1/47 (2%)

Query: 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
          E+++AI+LPP+GV L++G   VEF ICLLLT+LGY+PGIIYA+Y +V
Sbjct: 8  EVILAIILPPVGVFLRYGLA-VEFWICLLLTLLGYIPGIIYAVYVLV 53

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
357480027	244	Stress-induced hydrophobic peptide [Medi	0.973	0.303	0.851	6e-31
118483765	75	unknown [Populus trichocarpa]	0.986	1.0	0.906	1e-30
224088316	73	stress-induced hydrophobic peptide [Popu	0.960	1.0	0.917	7e-30
449457875	75	PREDICTED: UPF0057 membrane protein At4g	0.986	1.0	0.893	8e-30
388495520	77	unknown [Medicago truncatula]	0.986	0.974	0.853	2e-29
388498092	78	unknown [Lotus japonicus] gi|388505686|g	0.986	0.961	0.853	2e-29
313586571	75	stress-induced hydrophobic peptide 1 [He	0.960	0.973	0.904	4e-29
388503944	77	unknown [Medicago truncatula]	0.986	0.974	0.84	4e-29
255577047	75	Hydrophobic protein OSR8, putative [Rici	0.960	0.973	0.904	7e-29
356500671	75	PREDICTED: UPF0057 membrane protein At4g	0.960	0.973	0.849	2e-28

>gi|357480027|ref|XP_003610299.1| Stress-induced hydrophobic peptide [Medicago truncatula] gi|355511354|gb|AES92496.1| Stress-induced hydrophobic peptide [Medicago truncatula]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 70/74 (94%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEI+IA+LLPPLGVCL+HGCCTVEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPLYAP 74
          D+YFDEYRRPLY  
Sbjct: 61 DQYFDEYRRPLYNS 74

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483765|gb|ABK93775.1| unknown [Populus trichocarpa]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/75 (90%), Positives = 72/75 (96%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEILIAILLPPLGVC +HGCC+VEFCICLLLTILGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPLYAPG 75
          +EYFDEYRRPLYAP 
Sbjct: 61 NEYFDEYRRPLYAPA 75

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088316|ref|XP_002308410.1| stress-induced hydrophobic peptide [Populus trichocarpa] gi|222854386|gb|EEE91933.1| stress-induced hydrophobic peptide [Populus trichocarpa]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 67/73 (91%), Positives = 71/73 (97%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEILIAILLPPLGVC +HGCC+VEFCICLLLTILGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPLYA 73
          +EYFDEYRRPLYA
Sbjct: 61 NEYFDEYRRPLYA 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457875|ref|XP_004146673.1| PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] gi|449503159|ref|XP_004161863.1| PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/75 (89%), Positives = 71/75 (94%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEI CEILIAIL+PPLGVCL+HGCCTVEFCICLLLT LGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPLYAPG 75
          +EYFDEYRRPLYAP 
Sbjct: 61 NEYFDEYRRPLYAPA 75

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495520|gb|AFK35826.1| unknown [Medicago truncatula]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 71/75 (94%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEI+IA+LLPPLGVCL+HGCCTVEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPLYAPG 75
          D+YFDEYRRPLYA  
Sbjct: 61 DQYFDEYRRPLYAQS 75

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498092|gb|AFK37112.1| unknown [Lotus japonicus] gi|388505686|gb|AFK40909.1| unknown [Lotus japonicus]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 71/75 (94%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS C ICCE+LIA+LLPPLGVCL+HGCCTVEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPLYAPG 75
          D+YFDE RRPLYAPG
Sbjct: 61 DQYFDESRRPLYAPG 75

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586571|gb|ADR71296.1| stress-induced hydrophobic peptide 1 [Hevea brasiliensis]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+ CEICCEILIAILLPPLGVC +HGCC+VEFCICLLLTILGYVPGIIYALYAIVFVDR
Sbjct: 1  MPTRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60

Query: 61 DEYFDEYRRPLYA 73
          DEYFDE RRPLY+
Sbjct: 61 DEYFDESRRPLYS 73

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503944|gb|AFK40038.1| unknown [Medicago truncatula]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 70/75 (93%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEI+IA+LLPPLGVC +HGCCTVEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCFRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPLYAPG 75
          D+YFDEYRRPLYA  
Sbjct: 61 DQYFDEYRRPLYAQS 75

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577047|ref|XP_002529408.1| Hydrophobic protein OSR8, putative [Ricinus communis] gi|223531156|gb|EEF33004.1| Hydrophobic protein OSR8, putative [Ricinus communis]

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEI CEILIAILLPPLGVCL+HGCC+VEF ICLLLTILGYVPGIIYALYAIVFV+R
Sbjct: 1  MPSKCEILCEILIAILLPPLGVCLRHGCCSVEFWICLLLTILGYVPGIIYALYAIVFVNR 60

Query: 61 DEYFDEYRRPLYA 73
          DE+FDEYRRPLYA
Sbjct: 61 DEFFDEYRRPLYA 73

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500671|ref|XP_003519155.1| PREDICTED: UPF0057 membrane protein At4g30660 [Glycine max] gi|255628505|gb|ACU14597.1| unknown [Glycine max]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 70/73 (95%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+ CEICCEI+IAIL+PPLGVC +HGCC+VEF ICLLLTILGY+PGIIYALYAI+FVDR
Sbjct: 1  MPTRCEICCEIMIAILIPPLGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIIFVDR 60

Query: 61 DEYFDEYRRPLYA 73
          D+YFDEYRRPLYA
Sbjct: 61 DQYFDEYRRPLYA 73

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:1006230338	77	AT4G28088 "AT4G28088" [Arabido	0.736	0.727	0.807	2.1e-22
TAIR|locus:2061501	75	AT2G24040 [Arabidopsis thalian	0.684	0.693	0.807	4.9e-21
TAIR|locus:2131964	74	AT4G30660 "AT4G30660" [Arabido	0.697	0.716	0.773	5.7e-20
TAIR|locus:2118741	73	AT4G30650 "AT4G30650" [Arabido	0.539	0.561	0.804	1.8e-14
TAIR|locus:505006307	54	AT2G38905 "AT2G38905" [Arabido	0.460	0.648	0.722	4.7e-09
TAIR|locus:2074509	54	RCI2A "AT3G05880" [Arabidopsis	0.447	0.629	0.657	8.7e-08
TAIR|locus:2074419	54	RCI2B "RARE-COLD-INDUCIBLE 2B"	0.447	0.629	0.685	8.7e-08
WB|WBGene00020737	57	T23F2.4 [Caenorhabditis elegan	0.460	0.614	0.638	6.1e-07
UNIPROTKB|Q8H5T6	56	LTI6A "Hydrophobic protein LTI	0.447	0.607	0.628	1.3e-06
WB|WBGene00020736	57	T23F2.3 [Caenorhabditis elegan	0.460	0.614	0.611	1.3e-06

TAIR|locus:1006230338 AT4G28088 "AT4G28088" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 46/57 (80%), Positives = 52/57 (91%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPL-YAPGP 76
             GVCL+HGCCT EF ICL+LT+LGYVPGIIYALYAIV+VDRD++FDEYRRPL YA  P
Sbjct:    21 GVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDRDQFFDEYRRPLFYAQSP 77

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2061501 AT2G24040 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 42/52 (80%), Positives = 48/52 (92%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLY 72
             GVCL+HGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ RDEYFDEYRRP+Y
Sbjct:    21 GVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHRDEYFDEYRRPIY 72

GO:0005576 "extracellular region" evidence=ISM

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2131964 AT4G30660 "AT4G30660" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 41/53 (77%), Positives = 47/53 (88%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLYA 73
             GVC + GCCTVEF ICL+LTILGYVPGIIYA+Y IVF  R+EYFDEYRRP+Y+
Sbjct:    21 GVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHREEYFDEYRRPIYS 73

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2118741 AT4G30650 "AT4G30650" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 33/41 (80%), Positives = 37/41 (90%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRD 61
             GVCLK GCCTVEF ICL+LTILGY+PGIIYALY IVF +R+
Sbjct:    21 GVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNRE 61

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:505006307 AT2G38905 "AT2G38905" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
             GV L++GC  VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct:    19 GVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 53

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2074509 RCI2A "AT3G05880" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
             GV L+ GC  VEF ICL+LT+LGY+PGIIYA+Y +
Sbjct:    19 GVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0042538 "hyperosmotic salinity response" evidence=IGI;TAS

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009409 "response to cold" evidence=TAS

TAIR|locus:2074419 RCI2B "RARE-COLD-INDUCIBLE 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 24/35 (68%), Positives = 28/35 (80%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
             GV LK GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct:    19 GVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IMP

WB|WBGene00020737 T23F2.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
             GV L+ GC T    IC+LLTILGY+PGIIYA Y I+
Sbjct:    21 GVFLEKGC-THHLAICILLTILGYIPGIIYACYIIL 55

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8H5T6 LTI6A "Hydrophobic protein LTI6A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
             GV  K GC  +EF ICLLLT  GY+PGIIYA++ I
Sbjct:    21 GVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVI 54

GO:0005886 "plasma membrane" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

WB|WBGene00020736 T23F2.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
             GV L+ GC      IC+LLTILGY+PGIIYA Y I+
Sbjct:    21 GVFLEKGC-DYHLAICILLTILGYIPGIIYACYVIL 55

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M095	RC23_ARATH	No assigned EC number	0.7123	0.9473	0.9863	no	no
Q4HXT6	PMP3_GIBZE	No assigned EC number	0.5535	0.7236	0.9649	yes	no
Q9LRI7	OSR8_ORYSJ	No assigned EC number	0.7118	0.7763	0.8194	yes	no
Q22701	YCU4_CAEEL	No assigned EC number	0.6170	0.6052	0.8070	yes	no
Q9SUI0	RC24_ARATH	No assigned EC number	0.7945	0.9605	0.9864	no	no
A2Y075	LTI6B_ORYSI	No assigned EC number	0.7346	0.6315	0.8727	N/A	no
O82232	RC22_ARATH	No assigned EC number	0.7916	0.9473	0.96	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.330.1 SubName- Full=Putative uncharacterized protein; (73 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	76
pfam01679	51	pfam01679, Pmp3, Proteolipid membrane potential mo	3e-14
COG0401	56	COG0401, COG0401, Uncharacterized homolog of Blt10	3e-11

>gnl|CDD|201919 pfam01679, Pmp3, Proteolipid membrane potential modulator

 Score = 59.7 bits (146), Expect = 3e-14
 Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 8  CCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVF 57
             I++AI LPPL V LK GC   +F I +LLT+LGY+PGII+ALY I+ 
Sbjct: 3  ILLIILAIFLPPLAVFLKRGC-GKDFLINILLTLLGYIPGIIHALYIILK 51

Pmp3 is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Length = 51

>gnl|CDD|223478 COG0401, COG0401, Uncharacterized homolog of Blt101 [Function unknown]

 Score = 52.3 bits (126), Expect = 3e-11
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 11 ILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          I++AI LPPLGV L+ G    +F I +LLT+LGY+PGII+ALY I
Sbjct: 9  IVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVI 53

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
KOG1773	63	consensus Stress responsive protein [General funct	99.95
COG0401	56	Uncharacterized homolog of Blt101 [Function unknow	99.93
PF01679	51	Pmp3: Proteolipid membrane potential modulator; In	99.88
PF14373	43	Imm_superinfect: Superinfection immunity protein	89.46

>KOG1773 consensus Stress responsive protein [General function prediction only]

Probab=99.95  E-value=6.3e-28  Score=147.23  Aligned_cols=61  Identities=49%  Similarity=0.921  Sum_probs=59.6

Q ss_pred             CCcchHHHHHHHHHhhcchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheeeeeCcc
Q 035011            1 MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRD   61 (76)
Q Consensus         1 m~~~~~~~~~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~~~~~~   61 (76)
                      |++|+++++++++|+|+||+||++++|.|++|++||++||++||+||+|||+|++++++|+
T Consensus         1 m~~~~~~~~~iilai~lPP~aV~l~~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~~r~   61 (63)
T KOG1773|consen    1 MATDCDDILLIILAIFLPPLAVFLRRGGCTVDVLINILLTLLGFIPGIIHAIYIIFFRGRE   61 (63)
T ss_pred             CCCcHHHHHHHHHHHHcCchheeeecCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEecCC
Confidence            7899999999999999999999999999999999999999999999999999999999986

>COG0401 Uncharacterized homolog of Blt101 [Function unknown]

Probab=99.93  E-value=4.4e-26  Score=136.15  Aligned_cols=55  Identities=49%  Similarity=0.790  Sum_probs=52.4

Q ss_pred             chHHHHHHHHHhhcchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheeeee
Q 035011            4 CCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFV   58 (76)
Q Consensus         4 ~~~~~~~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~~~   58 (76)
                      +..|++++++|+|+||++|++++|.|++|+++|++||++||+||++||+|++.++
T Consensus         2 ~~~d~~~iilaiflPP~~VfL~~G~~~~df~iNiLLtlLg~~PGiiHA~yvi~~~   56 (56)
T COG0401           2 TLMDFIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD   56 (56)
T ss_pred             cHHHHHHHHHHHHcCchhhhhhccCCcHHHHHHHHHHHHHhhhhhHhheEEEEeC
Confidence            5789999999999999999999999999999999999999999999999999764

>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S

Probab=99.88  E-value=1.1e-23  Score=123.74  Aligned_cols=50  Identities=54%  Similarity=0.931  Sum_probs=48.0

Q ss_pred             HHHHHHHHhhcchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheeee
Q 035011            7 ICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVF   57 (76)
Q Consensus         7 ~~~~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~~   57 (76)
                      |++++++|+++||+||++++| |++|+++|++||++||+||++||+|++++
T Consensus         2 ~~~~~ilai~lPPlaV~~~~g-~~~~~~inl~Ltl~g~iPg~ihA~y~i~~   51 (51)
T PF01679_consen    2 DILLIILAIFLPPLAVFLKKG-CSKDFWINLLLTLLGWIPGVIHALYVIYK   51 (51)
T ss_pred             cHHHHHHHHHcccHHHHHHcC-CchhhHHHHHHHHHHHHHHHHHeeEEEeC
Confidence            689999999999999999999 99999999999999999999999999864

pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane

>PF14373 Imm_superinfect: Superinfection immunity protein

Probab=89.46  E-value=0.39  Score=27.21  Aligned_cols=23  Identities=43%  Similarity=0.658  Sum_probs=19.6

Q ss_pred             ChhHHHHHHH--HHHHhhhhhhhhh
Q 035011           30 TVEFCICLLL--TILGYVPGIIYAL   52 (76)
Q Consensus        30 ~~~~~In~lL--tllg~iPg~ihA~   52 (76)
                      ..=+++|++|  |.+||+-+.++|+
T Consensus        18 ~~I~~~Nl~lGWT~iGWv~aLiwA~   42 (43)
T PF14373_consen   18 WAIFLLNLLLGWTGIGWVAALIWAL   42 (43)
T ss_pred             hhhHhHHHHHHhHHHHHHHHHHHhc
Confidence            4457899998  9999999999885

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00