Citrus Sinensis ID: 035018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAMGTHETLECIVLHFELS
Secondary Structure (PSIPRED)
cccccccEEEEEcHHHHHHccccccccccccccccccccccccccccccccccHHHHHccccccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEcccEEEEEccHHHHHcccccccccccccEEccccccHccccccccccccHHHHHHHccccHHEEEEEEEEcc
Coil and Loop (DISEMBL)
MAELSQGILIdivdeewmrdtlpdddlplppvlvvrpddtedsnqepqqvnedtwhdlamgtHETLECIVLHFELS
Flexible Loop (DISEMBL)
MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAMGTHETLECIVLHFELS
Low Complexity Region (SEG)
MAELSQGILIDIVDEEWMrdtlpdddlplppvlvvrpddtEDSNQEPQQVNEDTWHDLAMGTHETLECIVLHFELS
Disordered region (IsUnstruct)
******GILIDIVDEEWMRDTLP********VL********************TWHDLAMGTHETLECIVLHF***
Disordered Region (DISOPRED)
****SQGILIDIVDEEWMRDTLPDDDLPLPPVL************************LAMGTHETLECIVLHFELS
Disordered Region (DISEMBL)
MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPD***********VNEDTWHDLAMGTHETLECIVLHFELS
Disordered Region (DISPRO)
***LSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDD************EDTWHDLAMGTHETLECIVLHFELS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAMGTHETLECIVLHFELS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
357511633	63	hypothetical protein MTR_7g111090 [Medic	0.802	0.968	0.852	3e-21
388501112	65	unknown [Lotus japonicus]	0.802	0.938	0.803	2e-20
225447868	63	PREDICTED: uncharacterized protein LOC10	0.828	1.0	0.809	3e-20
224079079	63	predicted protein [Populus trichocarpa]	0.828	1.0	0.793	4e-20
224116860	63	predicted protein [Populus trichocarpa]	0.828	1.0	0.761	3e-19
449460716	63	PREDICTED: uncharacterized protein LOC10	0.828	1.0	0.809	3e-19
297842059	96	hypothetical protein ARALYDRAFT_895176 [	0.828	0.656	0.5	4e-14
356571040	94	PREDICTED: uncharacterized protein LOC10	0.802	0.648	0.885	5e-13
356505713	63	PREDICTED: uncharacterized protein LOC10	0.802	0.968	0.885	7e-13
116778458	65	unknown [Picea sitchensis]	0.815	0.953	0.650	3e-12

>gi|357511633|ref|XP_003626105.1| hypothetical protein MTR_7g111090 [Medicago truncatula] gi|87240989|gb|ABD32847.1| hypothetical protein MtrDRAFT_AC149038g10v2 [Medicago truncatula] gi|355501120|gb|AES82323.1| hypothetical protein MTR_7g111090 [Medicago truncatula] gi|388518681|gb|AFK47402.1| unknown [Medicago truncatula]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 55/61 (90%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          MAELS GILIDIVDE+WMRDTLP DDLPLPP LVVR DDTEDSNQE QQVN+D WHDLA+
Sbjct: 1  MAELSLGILIDIVDEDWMRDTLPQDDLPLPPTLVVRTDDTEDSNQEAQQVNKDAWHDLAL 60

Query: 61 G 61
          G
Sbjct: 61 G 61

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501112|gb|AFK38622.1| unknown [Lotus japonicus]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 55/61 (90%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          MAE+S GILID+VDEEWMRDT+PDDDLPLPP LVVR DDTE++NQE Q VNED WHDLA+
Sbjct: 1  MAEVSLGILIDVVDEEWMRDTIPDDDLPLPPTLVVRTDDTEETNQETQHVNEDKWHDLAL 60

Query: 61 G 61
          G
Sbjct: 61 G 61

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447868|ref|XP_002272289.1| PREDICTED: uncharacterized protein LOC100267427 isoform 2 [Vitis vinifera] gi|225447870|ref|XP_002272257.1| PREDICTED: uncharacterized protein LOC100267427 isoform 1 [Vitis vinifera] gi|296081529|emb|CBI20052.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 55/63 (87%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          MAELS G+LIDIVDEEWMRDTLP DDLPLPPVLV R +DTEDSNQE QQV+ DTWHDLA+
Sbjct: 1  MAELSLGVLIDIVDEEWMRDTLPVDDLPLPPVLVARTEDTEDSNQENQQVDGDTWHDLAL 60

Query: 61 GTH 63
          G  
Sbjct: 61 GAQ 63

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079079|ref|XP_002305741.1| predicted protein [Populus trichocarpa] gi|222848705|gb|EEE86252.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 54/63 (85%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          MAEL+ GILIDIVDEEWMRDTLPDDDL LPPV+VVR DDTEDSNQE Q V+ D WHDLA+
Sbjct: 1  MAELNMGILIDIVDEEWMRDTLPDDDLALPPVMVVRTDDTEDSNQETQHVDTDAWHDLAL 60

Query: 61 GTH 63
          G  
Sbjct: 61 GNQ 63

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116860|ref|XP_002317412.1| predicted protein [Populus trichocarpa] gi|224116864|ref|XP_002317413.1| predicted protein [Populus trichocarpa] gi|118482505|gb|ABK93175.1| unknown [Populus trichocarpa] gi|222860477|gb|EEE98024.1| predicted protein [Populus trichocarpa] gi|222860478|gb|EEE98025.1| predicted protein [Populus trichocarpa]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 53/63 (84%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          MAEL+ GILIDIVDEEWMRDTLPDDDL LPPV+VVR DD EDSNQ+ Q V+ D WHDLA+
Sbjct: 1  MAELNMGILIDIVDEEWMRDTLPDDDLALPPVMVVRTDDAEDSNQDTQHVDADAWHDLAL 60

Query: 61 GTH 63
          G  
Sbjct: 61 GNQ 63

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460716|ref|XP_004148091.1| PREDICTED: uncharacterized protein LOC101219832 [Cucumis sativus]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 54/63 (85%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          MAELS GILIDI+DEEWMRDTLP DDL LPPVLVVR DDTEDSNQE Q V+ DTWHDLA+
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 60

Query: 61 GTH 63
          G  
Sbjct: 61 GNQ 63

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842059|ref|XP_002888911.1| hypothetical protein ARALYDRAFT_895176 [Arabidopsis lyrata subsp. lyrata] gi|297334752|gb|EFH65170.1| hypothetical protein ARALYDRAFT_895176 [Arabidopsis lyrata subsp. lyrata]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 55/96 (57%), Gaps = 33/96 (34%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDD---------------------------------DL 27
          MAE+S G+LIDIVDEEWMRDTLPDD                                 DL
Sbjct: 1  MAEVSLGMLIDIVDEEWMRDTLPDDGITIFFLLPTLYLKIIVFPFVHFIRNYCCVVVADL 60

Query: 28 PLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAMGTH 63
          PLPPVLVVR DDTE++NQE QQ + +TW DLA+ T 
Sbjct: 61 PLPPVLVVRTDDTEETNQENQQADAETWRDLALDTQ 96

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571040|ref|XP_003553689.1| PREDICTED: uncharacterized protein LOC100527611 [Glycine max]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 54/61 (88%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          MAELS GILIDIVDEEWMRDTLPDDDLPLPP LVVR DDTEDSNQE QQVN D WHDLA 
Sbjct: 32 MAELSLGILIDIVDEEWMRDTLPDDDLPLPPTLVVRTDDTEDSNQETQQVNLDAWHDLAF 91

Query: 61 G 61
          G
Sbjct: 92 G 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505713|ref|XP_003521634.1| PREDICTED: uncharacterized protein LOC100779178 [Glycine max] gi|255645642|gb|ACU23315.1| unknown [Glycine max]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 54/61 (88%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          MAELS GILIDIVDEEWMRDTLPDDDLPLPP LVVR DDTEDSNQE QQVN D WHDLA 
Sbjct: 1  MAELSLGILIDIVDEEWMRDTLPDDDLPLPPTLVVRTDDTEDSNQEIQQVNVDAWHDLAF 60

Query: 61 G 61
          G
Sbjct: 61 G 61

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116778458|gb|ABK20876.1| unknown [Picea sitchensis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 1  MAELSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEP-QQVNEDTWHDLA 59
          MAELS G+LIDIVDEEWMRDTL DDD+PLPP +   PD+ ED+ QE   Q +ED W DLA
Sbjct: 1  MAELSMGVLIDIVDEEWMRDTLDDDDVPLPPGMAPLPDEIEDAGQEELPQGSEDKWQDLA 60

Query: 60 MGT 62
          + T
Sbjct: 61 LHT 63

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:505006219	63	BNS "AT1G73177" [Arabidopsis t	0.815	0.984	0.435	2.6e-08

TAIR|locus:505006219 BNS "AT1G73177" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 27/62 (43%), Positives = 34/62 (54%)

Query:     1 MAELSQGILIDIVDEEWMXXXXXXXXXXXXXXXXXXXXXXEDSNQEPQQVNEDTWHDLAM 60
             MAE+S G+LIDIVDEEWM                      E++NQE QQ + +TW DLA+
Sbjct:     1 MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEETNQETQQADAETWRDLAL 60

Query:    61 GT 62
              T
Sbjct:    61 DT 62


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        54   0.00091  102 3  11 23  0.49    27
                                                     29  0.38    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  512 (54 KB)
  Total size of DFA:  102 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.76u 0.13s 5.89t   Elapsed:  00:00:00
  Total cpu time:  5.76u 0.13s 5.89t   Elapsed:  00:00:00
  Start:  Fri May 10 04:49:00 2013   End:  Fri May 10 04:49:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0010229 "inflorescence development" evidence=IMP

GO:0048827 "phyllome development" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0046008901 hypothetical protein (63 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
PF05839	88	Apc13p: Apc13p protein; InterPro: IPR008401 The an	99.7

>PF05839 Apc13p: Apc13p protein; InterPro: IPR008401 The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators

Probab=99.70  E-value=2.3e-18  Score=111.60  Aligned_cols=61  Identities=38%  Similarity=0.714  Sum_probs=50.4

Q ss_pred             cCCcEEEeechhhhhcCCCCCCCCCC-CCCcCC-CCCCCC----------CCCCccccCcccccccccccccc
Q 035018            5 SQGILIDIVDEEWMRDTLPDDDLPLP-PVLVVR-PDDTED----------SNQEPQQVNEDTWHDLAMGTHET   65 (76)
Q Consensus         5 ~dGrLiDIVDe~W~~DtLP~DdI~vP-~~~~p~-pE~~d~----------~~qet~k~qe~kW~DLAL~~l~~   65 (76)
                      .+|+++||||++|++|+||.|+|+|| +..+|. ||++++          ..+.+++.+|++|+||||.+|++
T Consensus        10 ~~~~~~~il~eeW~~D~LP~DdIeip~~~~~~~~pe~ed~~vp~~~~~~g~~~~~~~~~E~~W~Dl~l~~L~~   82 (88)
T PF05839_consen   10 LDGSHHDILDEEWNQDKLPFDDIEIPLPQLQNVNPEDEDDVVPDQSAAFGNKKNRQKEKEKDWNDLGLEELMS   82 (88)
T ss_pred             cccchHHHHHHHHHhCcCCcccccCcccccCCCCcccccCcCCCccccchhhhhchhcchhhhhhhchhHHhh
Confidence            46889999999999999999999999 666666 665555          12235789999999999999975

Members of this family are components of the anaphase-promoting complex homologous to Apc13p [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00