Citrus Sinensis ID: 035056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVLLE
Secondary Structure (PSIPRED)
cEEEEHHHHHHccEEEEEEEEEEEccccccEEEEEEEEEEccccccEEEEEEEEccccEEEEccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEHHHHHHHHccEEEccEEEEEccccccEEEEEEEEEccccccEEEEEEHEHcccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVTFILQELNNYLTVTTSTAVIvdkstdgdflridfnmsfpslpcefasidvsnvlgtvSYSSCQFLCSMVLLE
Flexible Loop (DISEMBL)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVLLE
Low Complexity Region (SEG)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVLLE
Disordered region (IsUnstruct)
**TFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVL**
Disordered Region (DISOPRED)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVLLE
Disordered Region (DISEMBL)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVLLE
Disordered Region (DISPRO)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVLLE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q9T042	480	Protein disulfide-isomera	yes	no	0.783	0.120	0.724	2e-18
Q69SA9	485	Protein disulfide isomera	yes	no	0.783	0.119	0.706	4e-18
Q9LJU2	483	Protein disulfide-isomera	no	no	0.783	0.120	0.706	5e-18
Q803I2	383	Endoplasmic reticulum-Gol	yes	no	0.756	0.146	0.403	0.0001
Q09895	390	Uncharacterized protein C	yes	no	0.756	0.143	0.368	0.0001
Q6NVS2	384	Endoplasmic reticulum-Gol	yes	no	0.756	0.145	0.403	0.0001
Q66KH2	389	Endoplasmic reticulum-Gol	N/A	no	0.756	0.143	0.403	0.0001
Q5EAE0	383	Endoplasmic reticulum-Gol	yes	no	0.608	0.117	0.456	0.0005

>sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          M+     ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT
Sbjct: 38 MIFLFGMELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGT 95

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)

>sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica GN=PDIL5-4 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 50/58 (86%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          MV     EL+NYL V TST+VIVD+S+DG+FLRIDFN+SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MVFLFGMELSNYLAVNTSTSVIVDRSSDGEFLRIDFNLSFPALSCEFASVDVSDVLGT 95

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 50/58 (86%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          M+     EL++YL V T+TAVIVDKS+DGDFLRIDFN+SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MMFLFGMELSSYLEVNTTTAVIVDKSSDGDFLRIDFNISFPALSCEFASVDVSDVLGT 95

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
          M+     EL  YLT      + VD S  GD LRI+ ++ FP +PC + SID  +V G
Sbjct: 38 MLILFFSELQYYLTKEVHPELFVDTSR-GDKLRINIDVIFPHMPCAYLSIDAMDVAG 93

Possible role in transport between endoplasmic reticulum and Golgi.

Danio rerio (taxid: 7955)

>sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
          ++  +L E  NY  V     +IV+ S  GD + I+FN++FP +PC+  ++DV +V G
Sbjct: 38 VIFIVLMEWINYRRVIAVHEIIVNPS-HGDRMEINFNITFPRIPCQILTVDVLDVSG 93

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
          M+     EL  YLT      + VDKS  GD L+I+ ++ FP +PC + SID  +V G
Sbjct: 38 MLILFFSELQYYLTKEIYPELFVDKSR-GDKLKINIDVIFPHMPCAYLSIDAMDVAG 93

Possible role in transport between endoplasmic reticulum and Golgi.

Xenopus tropicalis (taxid: 8364)

>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
          M+     EL  YLT      + VDKS  GD L+I+ ++ FP +PC + SID  +V G
Sbjct: 38 MLILFFSELQYYLTKEVYPELFVDKSR-GDKLKINIDVIFPHMPCAYLSIDAMDVAG 93

Possible role in transport between endoplasmic reticulum and Golgi.

Xenopus laevis (taxid: 8355)

>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
          YLT      + VDKS  GD L+I+ N+ FP +PC + SID  +V G
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKININVLFPHMPCAYLSIDAMDVAG 93

Possible role in transport between endoplasmic reticulum and Golgi.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
224126339	484	predicted protein [Populus trichocarpa]	0.783	0.119	0.758	3e-18
255563725	478	thioredoxin domain-containing protein, p	0.783	0.121	0.758	7e-18
224117462	484	predicted protein [Populus trichocarpa]	0.783	0.119	0.741	2e-17
388497088	457	unknown [Medicago truncatula]	0.783	0.126	0.741	2e-17
357474735	477	Endoplasmic reticulum-Golgi intermediate	0.783	0.121	0.724	8e-17
22328963	480	protein PDI-like 5-4 [Arabidopsis thalia	0.783	0.120	0.724	9e-17
297803392	480	hypothetical protein ARALYDRAFT_492089 [	0.783	0.120	0.724	9e-17
356549839	480	PREDICTED: protein disulfide-isomerase 5	0.783	0.120	0.706	9e-17
238480964	532	protein PDI-like 5-4 [Arabidopsis thalia	0.783	0.109	0.724	1e-16
115472445	485	Os07g0524100 [Oryza sativa Japonica Grou	0.783	0.119	0.706	2e-16

>gi|224126339|ref|XP_002319814.1| predicted protein [Populus trichocarpa] gi|222858190|gb|EEE95737.1| predicted protein [Populus trichocarpa]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 50/58 (86%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          MV     ELNNYLTV TST+VIVD S+DG+FLRIDFN+SFPSL CEFAS+DVS+VLGT
Sbjct: 38 MVFLFGMELNNYLTVNTSTSVIVDNSSDGEFLRIDFNLSFPSLSCEFASVDVSDVLGT 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563725|ref|XP_002522864.1| thioredoxin domain-containing protein, putative [Ricinus communis] gi|223537948|gb|EEF39562.1| thioredoxin domain-containing protein, putative [Ricinus communis]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 51/58 (87%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          MV     EL+NYLTV TST+VIVDKS+DGDFLRIDFN+SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MVFLFGMELSNYLTVNTSTSVIVDKSSDGDFLRIDFNLSFPALSCEFASVDVSDVLGT 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117462|ref|XP_002317580.1| predicted protein [Populus trichocarpa] gi|222860645|gb|EEE98192.1| predicted protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/58 (74%), Positives = 49/58 (84%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          M+     ELNNYLTV TST VIVD S+DG+FLRIDFN+SFPSL CEFAS+DVS+VLGT
Sbjct: 38 MMFLFGMELNNYLTVNTSTTVIVDNSSDGEFLRIDFNISFPSLSCEFASVDVSDVLGT 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497088|gb|AFK36610.1| unknown [Medicago truncatula]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/58 (74%), Positives = 50/58 (86%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          M+     EL+NYL VTTST+VIVDKS+DGDFLRIDFN SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MMFLFGMELSNYLAVTTSTSVIVDKSSDGDFLRIDFNFSFPALSCEFASVDVSDVLGT 95

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474735|ref|XP_003607653.1| Endoplasmic reticulum-Golgi intermediate compartment protein [Medicago truncatula] gi|355508708|gb|AES89850.1| Endoplasmic reticulum-Golgi intermediate compartment protein [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 49/58 (84%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          M+     EL+NY  VTTST+VIVDKS+DGDFLRIDFN SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MMFLFGMELSNYFAVTTSTSVIVDKSSDGDFLRIDFNFSFPALSCEFASVDVSDVLGT 95

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328963|ref|NP_567765.2| protein PDI-like 5-4 [Arabidopsis thaliana] gi|75213708|sp|Q9T042.1|PDI54_ARATH RecName: Full=Protein disulfide-isomerase 5-4; Short=AtPDIL5-4; AltName: Full=Protein disulfide-isomerase 7; Short=PDI7; AltName: Full=Protein disulfide-isomerase 8-2; Short=AtPDIL8-2; Flags: Precursor gi|4490704|emb|CAB38838.1| putative protein [Arabidopsis thaliana] gi|7269561|emb|CAB79563.1| putative protein [Arabidopsis thaliana] gi|15450832|gb|AAK96687.1| putative protein [Arabidopsis thaliana] gi|20259836|gb|AAM13265.1| putative protein [Arabidopsis thaliana] gi|332659897|gb|AEE85297.1| protein PDI-like 5-4 [Arabidopsis thaliana]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          M+     ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT
Sbjct: 38 MIFLFGMELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGT 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803392|ref|XP_002869580.1| hypothetical protein ARALYDRAFT_492089 [Arabidopsis lyrata subsp. lyrata] gi|297315416|gb|EFH45839.1| hypothetical protein ARALYDRAFT_492089 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          M+     ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT
Sbjct: 38 MIFLFGMELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGT 95

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549839|ref|XP_003543298.1| PREDICTED: protein disulfide-isomerase 5-4-like [Glycine max]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 51/58 (87%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          M+     ELN+YL+VTTST VIVDKS+DGD+LRIDFN+SFP+L CEFA++DVS+VLGT
Sbjct: 38 MIFLFGMELNSYLSVTTSTQVIVDKSSDGDYLRIDFNISFPALSCEFAAVDVSDVLGT 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238480964|ref|NP_680742.2| protein PDI-like 5-4 [Arabidopsis thaliana] gi|332659898|gb|AEE85298.1| protein PDI-like 5-4 [Arabidopsis thaliana]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
           M+     ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT
Sbjct: 90  MIFLFGMELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGT 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115472445|ref|NP_001059821.1| Os07g0524100 [Oryza sativa Japonica Group] gi|75118816|sp|Q69SA9.1|PDI54_ORYSJ RecName: Full=Protein disulfide isomerase-like 5-4; Short=OsPDIL5-4; AltName: Full=Protein disulfide isomerase-like 8-1; Short=OsPDIL8-1; Flags: Precursor gi|50508559|dbj|BAD30858.1| thioredoxin family-like protein [Oryza sativa Japonica Group] gi|113611357|dbj|BAF21735.1| Os07g0524100 [Oryza sativa Japonica Group] gi|215704615|dbj|BAG94243.1| unnamed protein product [Oryza sativa Japonica Group] gi|218199742|gb|EEC82169.1| hypothetical protein OsI_26259 [Oryza sativa Indica Group] gi|222637167|gb|EEE67299.1| hypothetical protein OsJ_24505 [Oryza sativa Japonica Group]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 50/58 (86%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          MV     EL+NYL V TST+VIVD+S+DG+FLRIDFN+SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MVFLFGMELSNYLAVNTSTSVIVDRSSDGEFLRIDFNLSFPALSCEFASVDVSDVLGT 95

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2136491	532	PDIL5-4 "PDI-like 5-4" [Arabid	0.783	0.109	0.724	2e-17
TAIR|locus:2085750	483	PDIL5-3 "PDI-like 5-3" [Arabid	0.689	0.105	0.784	2.4e-16
TAIR|locus:2036371	484	AT1G50950 [Arabidopsis thalian	0.689	0.105	0.725	2.3e-15
UNIPROTKB|Q5EAE0	383	ERGIC3 "Endoplasmic reticulum-	0.756	0.146	0.438	2.5e-06
UNIPROTKB|Q9Y282	383	ERGIC3 "Endoplasmic reticulum-	0.756	0.146	0.421	8.9e-06
MGI|MGI:1913616	383	Ergic3 "ERGIC and golgi 3" [Mu	0.756	0.146	0.421	8.9e-06
TAIR|locus:2034330	489	AT1G36050 "AT1G36050" [Arabido	0.756	0.114	0.423	1.3e-05
TAIR|locus:2087817	354	AT3G22290 "AT3G22290" [Arabido	0.756	0.158	0.421	3.5e-05
POMBASE|SPAC24B11.08c	390	SPAC24B11.08c "COPII-coated ve	0.756	0.143	0.368	5.3e-05
ZFIN|ZDB-GENE-040426-795	383	ergic3 "ERGIC and golgi 3" [Da	0.756	0.146	0.403	6.5e-05

TAIR|locus:2136491 PDIL5-4 "PDI-like 5-4" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
             M+     ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT
Sbjct:    90 MIFLFGMELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGT 147

GO:0005634 "nucleus" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2085750 PDIL5-3 "PDI-like 5-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 40/51 (78%), Positives = 48/51 (94%)

Query:     8 ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
             EL++YL V T+TAVIVDKS+DGDFLRIDFN+SFP+L CEFAS+DVS+VLGT
Sbjct:    45 ELSSYLEVNTTTAVIVDKSSDGDFLRIDFNISFPALSCEFASVDVSDVLGT 95

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2036371 AT1G50950 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 37/51 (72%), Positives = 46/51 (90%)

Query:     8 ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
             EL++YL + TST+VIVDKS+DGDFL IDFN+SFP+L CEFAS+DVS+V GT
Sbjct:    45 ELSSYLAINTSTSVIVDKSSDGDFLNIDFNISFPALSCEFASVDVSDVFGT 95

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q5EAE0 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
             M+   L EL  YLT      + VDKS  GD L+I+ N+ FP +PC + SID  +V G
Sbjct:    38 MLLLFLSELQYYLTTEVHPELYVDKSR-GDKLKININVLFPHMPCAYLSIDAMDVAG 93

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Y282 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
             M+   L EL  YLT      + VDKS  GD L+I+ ++ FP +PC + SID  +V G
Sbjct:    38 MLLLFLSELQYYLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAG 93

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

MGI|MGI:1913616 Ergic3 "ERGIC and golgi 3" [Mus musculus (taxid:10090)]

 Score = 111 (44.1 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
             M+   L EL  YLT      + VDKS  GD L+I+ ++ FP +PC + SID  +V G
Sbjct:    38 MLLLFLSELQYYLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAG 93

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

TAIR|locus:2034330 AT1G36050 "AT1G36050" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query:     1 MVTFIL--QELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
             +V F+L   EL  YL   T T +IVD S  G+ LRI+F+++FP+L C   S+D  ++ G
Sbjct:    37 VVMFLLFFSELRLYLHTVTETKLIVDTSR-GETLRINFDITFPALACSILSVDAMDISG 94

GO:0003674 "molecular_function" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2087817 AT3G22290 "AT3G22290" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
             M T  L EL+ YL   T   + VD    G+ L I  NM+FPSLPC+  S+D  ++ G
Sbjct:    38 MATLFLHELSYYLNTLTVHQMSVDLKR-GETLPIHVNMTFPSLPCDVLSVDAIDMSG 93

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

POMBASE|SPAC24B11.08c SPAC24B11.08c "COPII-coated vesicle component Erv46 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 104 (41.7 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
             ++  +L E  NY  V     +IV+ S  GD + I+FN++FP +PC+  ++DV +V G
Sbjct:    38 VIFIVLMEWINYRRVIAVHEIIVNPS-HGDRMEINFNITFPRIPCQILTVDVLDVSG 93

GO:0000139 "Golgi membrane" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030134 "ER to Golgi transport vesicle" evidence=ISO

ZFIN|ZDB-GENE-040426-795 ergic3 "ERGIC and golgi 3" [Danio rerio (taxid:7955)]

 Score = 103 (41.3 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
             M+     EL  YLT      + VD S  GD LRI+ ++ FP +PC + SID  +V G
Sbjct:    38 MLILFFSELQYYLTKEVHPELFVDTSR-GDKLRINIDVIFPHMPCAYLSIDAMDVAG 93

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q69SA9	PDI54_ORYSJ	No assigned EC number	0.7068	0.7837	0.1195	yes	no
Q9T042	PDI54_ARATH	No assigned EC number	0.7241	0.7837	0.1208	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	74
pfam13850	105	pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi In	5e-14

>gnl|CDD|206021 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

 Score = 60.6 bits (148), Expect = 5e-14
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
          ++   + EL +YLT  T   ++VD S  G+ LRI+ +++FP LPC+  S+DV +V G 
Sbjct: 33 IIILFVSELRDYLTPVTRPELVVDTS-RGEKLRINLDITFPRLPCDLLSLDVMDVSGE 89

This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
PF13850	96	ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate	99.91
KOG2667	379	consensus COPII vesicle protein [Intracellular tra	99.83

>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

Probab=99.91  E-value=4e-25  Score=134.62  Aligned_cols=64  Identities=33%  Similarity=0.695  Sum_probs=60.9

Q ss_pred             CEEEeeehhhhccccceEEEEEEcCCCCCceEEEEEeEEEccccceeeeeeeeecCCceeecccC
Q 035056            1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQ   65 (74)
Q Consensus         1 ~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~~l~In~DItfp~~pC~~lsvDv~D~~G~~~~~i~~   65 (74)
                      |++|+++|+++|+++++++++.||++++ ++++||||||||+|||++|++|++|++|+++.|++|
T Consensus        33 ~~~L~~~E~~~y~~~~~~~~~~VD~~~~-~~l~in~ditf~~~pC~~l~vDv~D~~G~~~~dv~h   96 (96)
T PF13850_consen   33 IVILFISELYSYLSGEIKYQLVVDTSRD-EKLQINFDITFPHMPCDFLSVDVQDASGDHQLDVTH   96 (96)
T ss_pred             HHHHHHHHHHHHcccceeEEEEEcCCCC-ceEEEEEEEEECCCccCeeeeEeEccCCCeeccccC
Confidence            3578999999999999999999999888 999999999999999999999999999999999976

>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.2e-21  Score=142.54  Aligned_cols=71  Identities=37%  Similarity=0.696  Sum_probs=67.7

Q ss_pred             CEEEeeehhhhccccceEEEEEEcCCCCCceEEEEEeEEEccccceeeeeeeeecCCceeecccCCEEEEEE
Q 035056            1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVL   72 (74)
Q Consensus         1 ~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~~l~In~DItfp~~pC~~lsvDv~D~~G~~~~~i~~~i~k~~~   72 (74)
                      |++|+++|+..|+.+...++++||.+++ ++++||||||||+|||+++++|++|.+|+.+.++.++|+|-||
T Consensus        38 i~~L~~~E~~~y~~~~~~~~~~vd~s~~-e~l~in~DItfp~lpC~~lsVDv~D~sg~~~l~i~~~i~k~rl  108 (379)
T KOG2667|consen   38 ILFLFFMELSQYLSVITSTELFVDDSRD-EKLQINFDITFPALPCSILSVDVMDVSGEMVLDIDHLIYKLRL  108 (379)
T ss_pred             HHHHHHHHHHHHhhhcceeEEEEeCCCC-ceeeeeeeEEeccCccceEEEEeeccccccccchhhhhhhccc
Confidence            4678999999999999999999999996 9999999999999999999999999999999999999999876

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00