Citrus Sinensis ID: 035076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccEEEEEEccccccccccccccccEEEEEEEEHHHcccccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccccHHHHcHHHHccccHHHcccccccccEEEEEEcHHHcccccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
mgvlaasedpcllvsaasfkaPLLKAVSWMEnnsekffcsqsdgahcwtlfstaaygkrnkvpqVFLHINVCLV
Flexible Loop (DISEMBL)
mgvlaasedpcLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAygkrnkvpqVFLHINVCLV
Low Complexity Region (SEG)
MGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Disordered region (IsUnstruct)
*********PCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCL*
Disordered Region (DISOPRED)
*GVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Disordered Region (DISEMBL)
MGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Disordered Region (DISPRO)
*GVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
255580905	467	conserved hypothetical protein [Ricinus	0.824	0.130	0.606	2e-11
224130614	496	predicted protein [Populus trichocarpa]	0.851	0.127	0.537	3e-11
226530158	505	uncharacterized protein LOC100272440 [Ze	0.851	0.124	0.536	6e-11
414868816	384	TPA: hypothetical protein ZEAMMB73_11144	0.851	0.164	0.536	8e-11
147823103	2691	hypothetical protein VITISV_000598 [Viti	0.837	0.023	0.523	9e-11
449443231	545	PREDICTED: uncharacterized protein LOC10	0.837	0.113	0.529	2e-10
449483109	536	PREDICTED: uncharacterized protein LOC10	0.837	0.115	0.529	2e-10
194699268	310	unknown [Zea mays]	0.837	0.2	0.544	2e-10
225463946	467	PREDICTED: uncharacterized protein LOC10	0.824	0.130	0.516	1e-09
296087896	518	unnamed protein product [Vitis vinifera]	0.824	0.117	0.516	1e-09

>gi|255580905|ref|XP_002531271.1| conserved hypothetical protein [Ricinus communis] gi|223529104|gb|EEF31084.1| conserved hypothetical protein [Ricinus communis]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 47/66 (71%), Gaps = 5/66 (7%)

Query: 3   VLAASEDPCLLVSAAS-FKAPLLKAV---SWMENNSEKFFCSQSDGAHCWTLFSTAAYGK 58
           +LAA E+P  + S AS F+   +K V   SWM NNS K F SQS+G HCWT FSTAA+GK
Sbjct: 267 LLAAFEEPLPIPSGASPFEGAFVKGVDSISWMGNNSMKLF-SQSNGPHCWTFFSTAAFGK 325

Query: 59  RNKVPQ 64
           RNKVPQ
Sbjct: 326 RNKVPQ 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 2   GVLAASEDPCLLVSAAS-FKAPLLKAV---SWMENNSEKFFCSQSDGAHCWTLFSTAAYG 57
            +LAA EDP  + + A+ F+   +K V   SWM NNS K   S+++  HCWT FSTAAYG
Sbjct: 290 ALLAAFEDPLPIPTGATPFEGAFVKGVDSLSWMGNNSAKLLGSKTNSPHCWTFFSTAAYG 349

Query: 58  KRNKVPQ 64
           KRNKVPQ
Sbjct: 350 KRNKVPQ 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226530158|ref|NP_001140386.1| uncharacterized protein LOC100272440 [Zea mays] gi|223973745|gb|ACN31060.1| unknown [Zea mays]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 2   GVLAASEDPC---LLVSAASFKAPLLKAV---SWMENNSEKFFCSQSDGAHCWTLFSTAA 55
            +LAA EDP    LL S A+F+   ++ V   SWM NN+ K F  Q+    CWT FSTAA
Sbjct: 297 ALLAAFEDPLPIPLLDSNAAFEGAFVRDVDSLSWMGNNTRKLFPMQTGAPECWTFFSTAA 356

Query: 56  YGKRNKVPQ 64
           YGKRNKVPQ
Sbjct: 357 YGKRNKVPQ 365

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414868816|tpg|DAA47373.1| TPA: hypothetical protein ZEAMMB73_111446, partial [Zea mays]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 2   GVLAASEDPC---LLVSAASFKAPLLKAV---SWMENNSEKFFCSQSDGAHCWTLFSTAA 55
            +LAA EDP    LL S A+F+   ++ V   SWM NN+ K F  Q+    CWT FSTAA
Sbjct: 297 ALLAAFEDPLPIPLLDSNAAFEGAFVRDVDSLSWMGNNTRKLFPMQTGAPECWTFFSTAA 356

Query: 56  YGKRNKVPQ 64
           YGKRNKVPQ
Sbjct: 357 YGKRNKVPQ 365

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823103|emb|CAN66330.1| hypothetical protein VITISV_000598 [Vitis vinifera]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 2   GVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNK 61
            +LAA EDP  +    +F    + ++SWM NN++K   S S G HCWT FSTAA+GKRNK
Sbjct: 581 ALLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKKLLHSLSSGPHCWTFFSTAAFGKRNK 639

Query: 62  VPQ 64
           VPQ
Sbjct: 640 VPQ 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 3   VLAASEDPCLLVSAAS---FKAPLLKAV---SWMENNSEKFFCSQSDGAHCWTLFSTAAY 56
           +LAA EDP      A    F+   +K V   SWM NN++KF   Q DG HCWT  STAAY
Sbjct: 293 LLAAFEDPLPFPDTAEKFPFEGAFVKGVDSLSWMANNNKKFLNFQKDGPHCWTFLSTAAY 352

Query: 57  GKRNKVPQ 64
           GK+NKVPQ
Sbjct: 353 GKQNKVPQ 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483109|ref|XP_004156495.1| PREDICTED: uncharacterized protein LOC101226129 [Cucumis sativus]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 3   VLAASEDPCLLVSAAS---FKAPLLKAV---SWMENNSEKFFCSQSDGAHCWTLFSTAAY 56
           +LAA EDP      A    F+   +K V   SWM NN++KF   Q DG HCWT  STAAY
Sbjct: 293 LLAAFEDPLPFPDTAEKFPFEGAFVKGVDSLSWMANNNKKFLNFQKDGPHCWTFLSTAAY 352

Query: 57  GKRNKVPQ 64
           GK+NKVPQ
Sbjct: 353 GKQNKVPQ 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194699268|gb|ACF83718.1| unknown [Zea mays]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 44/68 (64%), Gaps = 6/68 (8%)

Query: 3   VLAASEDPC---LLVSAASFKAPLLKAV---SWMENNSEKFFCSQSDGAHCWTLFSTAAY 56
           +LAA EDP    LL S A+F+   ++ V   SWM NN+ K F  Q+    CWT FSTAAY
Sbjct: 103 LLAAFEDPLPIPLLDSNAAFEGAFVRDVDSLSWMGNNTRKLFPMQTGAPECWTFFSTAAY 162

Query: 57  GKRNKVPQ 64
           GKRNKVPQ
Sbjct: 163 GKRNKVPQ 170

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 3   VLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKV 62
           +LAA EDP  +    +F    + ++SWM NN++K   S   G HCWT FSTAA+GKRNKV
Sbjct: 267 LLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKKLLHSLGSGPHCWTFFSTAAFGKRNKV 325

Query: 63  PQ 64
           PQ
Sbjct: 326 PQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 3   VLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKV 62
           +LAA EDP  +    +F    + ++SWM NN++K   S   G HCWT FSTAA+GKRNKV
Sbjct: 267 LLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKKLLHSLGSGPHCWTFFSTAAFGKRNKV 325

Query: 63  PQ 64
           PQ
Sbjct: 326 PQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.824	0.125	0.483	5.8e-09

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query:     3 VLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKV 62
             +LAA +DP   V+        ++++SWM NNS K    ++   HCWT FSTAAYGK+NKV
Sbjct:   287 LLAAFDDPLPTVNFEGAFVKGVESLSWMGNNSAKLGNGRTP-PHCWTFFSTAAYGKQNKV 345

Query:    63 PQ 64
             PQ
Sbjct:   346 PQ 347


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.131   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        74   0.00091  102 3  11 22  0.45    28
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  113 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.31u 0.22s 8.53t   Elapsed:  00:00:01
  Total cpu time:  8.31u 0.22s 8.53t   Elapsed:  00:00:01
  Start:  Fri May 10 05:20:48 2013   End:  Fri May 10 05:20:49 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.35

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.35  E-value=3.5e-13  Score=102.74  Aligned_cols=55  Identities=7%  Similarity=0.274  Sum_probs=49.6

Q ss_pred             CeeEEeecCCcccccccccccccc--ceeeeEeeCCCCCCCCCCCCCcEEEEEeChhhHhhcC
Q 035076            1 MGVLAASEDPCLLVSAASFKAPLL--KAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNK   61 (74)
Q Consensus         1 ~alm~aF~~Pl~~~~~~~~~gafv--~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~wS~~Hk   61 (74)
                      +++|+.|++||+.|    +.|.|+  ++|.||+||.+|||  +....+.||+||+++||++|=
T Consensus       189 ~s~~lg~~q~l~~P----~~G~~vdg~~laWla~d~sK~g--~~p~~~~~vvqasp~wSr~h~  245 (331)
T COG3380         189 WSAVLGYPQPLDRP----WPGNFVDGHPLAWLARDASKKG--HVPDGEIWVVQASPDWSREHL  245 (331)
T ss_pred             HHHHhcCCccCCCC----CCCcccCCCeeeeeeccccCCC--CCCcCceEEEEeCchHHHHhh
Confidence            36899999999999    999999  79999999999999  455678999999999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.3
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.76

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.30  E-value=4.6e-07  Score=63.54  Aligned_cols=56  Identities=9%  Similarity=0.085  Sum_probs=42.5

Q ss_pred             eeEEeecCC--cccccccccccccc---ceeeeEeeCCCCCCCCCCCCCcEEEEEeChhhHhhcC
Q 035076            2 GVLAASEDP--CLLVSAASFKAPLL---KAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNK   61 (74)
Q Consensus         2 alm~aF~~P--l~~~~~~~~~gafv---~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~wS~~Hk   61 (74)
                      ++|++|+++  ++.+    ++|.++   +.|.|++++++|||+...++..+||+|++.+|+++|.
T Consensus       195 ~v~l~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~  255 (342)
T 3qj4_A          195 ALGLFYEAGTKIDVP----WAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYL  255 (342)
T ss_dssp             EEEEECSSCC--CCS----CSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTT
T ss_pred             EEEEEECCCCccCCc----eeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhh
Confidence            689999976  5556    888887   3499999999999821112346999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00