Citrus Sinensis ID: 035087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MCFFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLIFSIAEVFADKFLTG
Secondary Structure (PSIPRED)
cccccccHHHHHEEEEEccccccEEEEEEEEEEEEEcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEccccHHHHHEEEccccccEEEEEEEEEEEEEccEHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mcffchfysqVGLRLLfcplgsniilrTACCSVVVAlpvystfkaierkdeDEQQKWLIFSIAEVFADKFLTG
Flexible Loop (DISEMBL)
MCFFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLIFSIAEVFADKFLTG
Low Complexity Region (SEG)
MCFFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLIFSIAEVFADKFLTG
Disordered region (IsUnstruct)
*CFFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLIFSIAEVFADKFL**
Disordered Region (DISOPRED)
*******YSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIER**EDEQQKWLIFSIAEVFADKFLTG
Disordered Region (DISEMBL)
MCFFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLIFSIAEVFADKFLTG
Disordered Region (DISPRO)
MCFFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLIFSIAEVFADKFLT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCFFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLIFSIAEVFADKFLTG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q6NLY8	200	HVA22-like protein k OS=A	yes	no	0.876	0.32	0.619	1e-18

>sp|Q6NLY8|HA22K_ARATH HVA22-like protein k OS=Arabidopsis thaliana GN=HVA22K PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 7/71 (9%)

Query: 9  SQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FS 61
           +VGLR+LF PL SNI+LRTACCS+ + LPVYSTFKAIE  DE+EQQK LI       FS
Sbjct: 20 GEVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKMLIYWAAYGSFS 79

Query: 62 IAEVFADKFLT 72
          + EVF DK ++
Sbjct: 80 LVEVFTDKIIS 90

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
255568265	192	Receptor expression-enhancing protein, p	0.863	0.328	0.714	1e-20
359475272	214	PREDICTED: HVA22-like protein k-like [Vi	0.945	0.322	0.618	4e-20
224096944	196	predicted protein [Populus trichocarpa]	0.876	0.326	0.633	8e-20
297735194	142	unnamed protein product [Vitis vinifera]	0.863	0.443	0.647	2e-18
224103445	189	predicted protein [Populus trichocarpa]	0.904	0.349	0.630	3e-18
358248064	193	uncharacterized protein LOC100811809 [Gl	0.876	0.331	0.647	4e-18
388498046	209	unknown [Lotus japonicus]	0.931	0.325	0.586	2e-17
4006895	227	putative protein [Arabidopsis thaliana]	0.863	0.277	0.628	2e-17
397746449	201	bZIP13 [Tamarix hispida]	0.876	0.318	0.619	3e-17
79497359	200	HVA22-like protein k [Arabidopsis thalia	0.876	0.32	0.619	6e-17

>gi|255568265|ref|XP_002525107.1| Receptor expression-enhancing protein, putative [Ricinus communis] gi|223535566|gb|EEF37234.1| Receptor expression-enhancing protein, putative [Ricinus communis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 56/70 (80%), Gaps = 7/70 (10%)

Query: 9  SQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FS 61
          S+VGLRLL CPLGSNI++RTACCSV V LPVYST KAIERKD++EQQKWLI       FS
Sbjct: 10 SEVGLRLLLCPLGSNIVIRTACCSVGVVLPVYSTLKAIERKDQNEQQKWLIYWAAYGSFS 69

Query: 62 IAEVFADKFL 71
          + EVF DK L
Sbjct: 70 LVEVFTDKLL 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475272|ref|XP_002280949.2| PREDICTED: HVA22-like protein k-like [Vitis vinifera] gi|297741427|emb|CBI32558.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 7/76 (9%)

Query: 3  FFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI--- 59
          F  +  S+VGLRLL CPLGSN+++RTACCSV +  PVYSTFKAIE+KD++EQQ+WL+   
Sbjct: 4  FGSNVSSEVGLRLLLCPLGSNVVVRTACCSVGIVFPVYSTFKAIEKKDQNEQQRWLVYWA 63

Query: 60 ----FSIAEVFADKFL 71
              FS+AE FADK L
Sbjct: 64 AYGSFSLAEAFADKVL 79

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096944|ref|XP_002310796.1| predicted protein [Populus trichocarpa] gi|222853699|gb|EEE91246.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 58/71 (81%), Gaps = 7/71 (9%)

Query: 9  SQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FS 61
          ++VGLRLL CPLGSNI++RTACCSV + +PVY TFKAIERKDE+E+QKWL+       F+
Sbjct: 10 NEVGLRLLLCPLGSNIVVRTACCSVGIVIPVYHTFKAIERKDENEEQKWLMYWAAYGSFT 69

Query: 62 IAEVFADKFLT 72
          +AEVF DK ++
Sbjct: 70 LAEVFTDKLIS 80

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735194|emb|CBI17556.3| unnamed protein product [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 8/71 (11%)

Query: 10 QVGLRLLFCPLGSN-IILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FS 61
          +VGLRLL CPLGSN I++RTACCSV + LPVYSTFKAIERKD++E+Q+WL+       FS
Sbjct: 11 EVGLRLLLCPLGSNNIVIRTACCSVGIVLPVYSTFKAIERKDQNEEQRWLLYWAAYGSFS 70

Query: 62 IAEVFADKFLT 72
          + EVFADK ++
Sbjct: 71 LVEVFADKLIS 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103445|ref|XP_002313060.1| predicted protein [Populus trichocarpa] gi|222849468|gb|EEE87015.1| predicted protein [Populus trichocarpa]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 7/73 (9%)

Query: 7  FYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI------- 59
          F  +VGL+LL  PL SNI++RTACCSV +ALP+YSTFKAIE KD+ EQQ+WL+       
Sbjct: 3  FPGEVGLQLLLSPLNSNIVVRTACCSVGIALPIYSTFKAIENKDQIEQQRWLLYWAAYGS 62

Query: 60 FSIAEVFADKFLT 72
          FS+AEVFADK L+
Sbjct: 63 FSLAEVFADKILS 75

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248064|ref|NP_001239804.1| uncharacterized protein LOC100811809 [Glycine max] gi|255636485|gb|ACU18581.1| unknown [Glycine max]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 56/71 (78%), Gaps = 7/71 (9%)

Query: 9  SQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FS 61
          S+VGLRLL CPLGSN+++RTACC+V VALPVYSTFKAIE KD+D Q K L+       FS
Sbjct: 10 SEVGLRLLLCPLGSNVVIRTACCTVGVALPVYSTFKAIESKDQDAQHKCLLYWAAYGSFS 69

Query: 62 IAEVFADKFLT 72
          +AEVF DK ++
Sbjct: 70 LAEVFTDKLIS 80

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498046|gb|AFK37089.1| unknown [Lotus japonicus]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 7/75 (9%)

Query: 5  CHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI----- 59
           +  S+VGLRLL CPLGSN+++RTACCSV +ALPVYSTFKAIE KD+D Q + L+     
Sbjct: 7  SNLTSEVGLRLLLCPLGSNVVIRTACCSVGIALPVYSTFKAIESKDQDAQNRCLLYWAAY 66

Query: 60 --FSIAEVFADKFLT 72
            FS+ EVF DK ++
Sbjct: 67 GSFSLVEVFTDKLIS 81

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4006895|emb|CAB16825.1| putative protein [Arabidopsis thaliana] gi|7270620|emb|CAB80338.1| putative protein [Arabidopsis thaliana]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 7/70 (10%)

Query: 10 QVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FSI 62
          +VGLR+LF PL SNI+LRTACCS+ + LPVYSTFKAIE  DE+EQQK LI       FS+
Sbjct: 21 EVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKMLIYWAAYGSFSL 80

Query: 63 AEVFADKFLT 72
           EVF DK ++
Sbjct: 81 VEVFTDKIIS 90

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397746449|gb|AFO63292.1| bZIP13 [Tamarix hispida]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 7/71 (9%)

Query: 9  SQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FS 61
          S VGLRLL  PL +NI++RTACC+V   LPVY+TFKAIERKD++EQ+KWLI       FS
Sbjct: 10 SDVGLRLLLGPLDTNIVVRTACCTVGTVLPVYTTFKAIERKDQNEQEKWLIYWAAYGSFS 69

Query: 62 IAEVFADKFLT 72
          + EVF DK L+
Sbjct: 70 LIEVFTDKLLS 80

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79497359|ref|NP_195390.2| HVA22-like protein k [Arabidopsis thaliana] gi|57012586|sp|Q6NLY8.1|HA22K_ARATH RecName: Full=HVA22-like protein k; Short=AtHVA22k gi|45752772|gb|AAS76284.1| At4g36720 [Arabidopsis thaliana] gi|332661293|gb|AEE86693.1| HVA22-like protein k [Arabidopsis thaliana]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 7/71 (9%)

Query: 9  SQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FS 61
           +VGLR+LF PL SNI+LRTACCS+ + LPVYSTFKAIE  DE+EQQK LI       FS
Sbjct: 20 GEVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKMLIYWAAYGSFS 79

Query: 62 IAEVFADKFLT 72
          + EVF DK ++
Sbjct: 80 LVEVFTDKIIS 90

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
TAIR|locus:2115315	200	HVA22K "AT4G36720" [Arabidopsi	0.863	0.315	0.628	2e-17
MGI|MGI:1270152	185	Reep5 "receptor accessory prot	0.821	0.324	0.347	0.00068
RGD|1306047	189	Reep5 "receptor accessory prot	0.821	0.317	0.347	0.00072

TAIR|locus:2115315 HVA22K "AT4G36720" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/70 (62%), Positives = 53/70 (75%)

Query:    10 QVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FSI 62
             +VGLR+LF PL SNI+LRTACCS+ + LPVYSTFKAIE  DE+EQQK LI       FS+
Sbjct:    21 EVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKMLIYWAAYGSFSL 80

Query:    63 AEVFADKFLT 72
              EVF DK ++
Sbjct:    81 VEVFTDKIIS 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1270152 Reep5 "receptor accessory protein 5" [Mus musculus (taxid:10090)]

 Score = 88 (36.0 bits), Expect = 0.00068, P = 0.00068
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query:    11 VGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWL-------IFSIA 63
             +GL  L+   G    L   C  +    P Y + KAIE  ++D+  +WL       +FSIA
Sbjct:    38 IGLVALYLVFGYGASL--LCNLIGFGYPAYISMKAIESPNKDDDTQWLTYWVVYGVFSIA 95

Query:    64 EVFADKFLT 72
             E F+D FL+
Sbjct:    96 EFFSDLFLS 104

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1306047 Reep5 "receptor accessory protein 5" [Rattus norvegicus (taxid:10116)]

 Score = 88 (36.0 bits), Expect = 0.00072, P = 0.00072
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query:    11 VGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWL-------IFSIA 63
             +GL  L+   G    L   C  +    P Y + KAIE  ++D+  +WL       +FSIA
Sbjct:    42 IGLVALYLVFGYGASL--LCNLIGFGYPAYISMKAIESPNKDDDTQWLTYWVVYGVFSIA 99

Query:    64 EVFADKFLT 72
             E F+D FL+
Sbjct:   100 EFFSDLFLS 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.333   0.144   0.469    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       73        73   0.00091  102 3  11 21  0.38    28
                                                     29  0.45    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  545 (58 KB)
  Total size of DFA:  104 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.52u 0.13s 8.65t   Elapsed:  00:00:00
  Total cpu time:  8.52u 0.13s 8.65t   Elapsed:  00:00:00
  Start:  Fri May 10 05:27:01 2013   End:  Fri May 10 05:27:01 2013

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	73
pfam03134	94	pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family	3e-06

>gnl|CDD|217381 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family

 Score = 40.6 bits (96), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 23 NIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWL-------IFSIAEVFADKFL 71
           I  R     +    P Y+++KA+E KD+++  +WL         ++ E F+D  L
Sbjct: 2  GIGARLLSNLIGFLYPAYASYKALESKDKEDDTQWLTYWVVYSFLTLFESFSDIIL 57

This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
KOG1725	186	consensus Protein involved in membrane traffic (YO	99.75
PF03134	94	TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IP	99.49
KOG1726	225	consensus HVA22/DP1 gene product-related proteins	98.97
COG5052	186	YOP1 Protein involved in membrane traffic [Intrace	98.54

>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.1e-18  Score=122.62  Aligned_cols=60  Identities=28%  Similarity=0.485  Sum_probs=52.0

Q ss_pred             hhhhhhHhhhhcchhhhHHHHHHHHHHhhhHHHHHHHHHhcCChhhhHHHHH-------HHHHHHHHHhhhc
Q 035087            8 YSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FSIAEVFADKFLT   72 (73)
Q Consensus         8 ~g~vgl~lll~~~~s~i~~~ll~~~iG~~YPAYaS~kAies~~~~d~~qWLt-------f~~vE~~~d~ils   72 (73)
                      .|..++|++++-     +++++||++|++||+|+|+|||||++++||+|||+       ++++|.+.+.+++
T Consensus        45 ~~l~~v~l~~g~-----~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~  111 (186)
T KOG1725|consen   45 ILLLAVYLLFGS-----GGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILS  111 (186)
T ss_pred             HHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555     45999999999999999999999999999999999       8999999998876

>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes

Probab=99.49  E-value=8e-14  Score=87.38  Aligned_cols=50  Identities=34%  Similarity=0.705  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHhcCChhhhHHHHH-------HHHHHHHHHhhhc
Q 035087           23 NIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FSIAEVFADKFLT   72 (73)
Q Consensus        23 ~i~~~ll~~~iG~~YPAYaS~kAies~~~~d~~qWLt-------f~~vE~~~d~ils   72 (73)
                      |++++++|+++|++||||+|+||+|+++++|+++||+       ++++|.+.|.+++
T Consensus         2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~   58 (94)
T PF03134_consen    2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILS   58 (94)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6788999999999999999999999999999999999       8889999888764

It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.

>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]

Probab=98.97  E-value=5.8e-10  Score=81.50  Aligned_cols=47  Identities=30%  Similarity=0.578  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHhc--CChhhhHHHHH-------HHHHHHHHHhhhc
Q 035087           26 LRTACCSVVVALPVYSTFKAIER--KDEDEQQKWLI-------FSIAEVFADKFLT   72 (73)
Q Consensus        26 ~~ll~~~iG~~YPAYaS~kAies--~~~~d~~qWLt-------f~~vE~~~d~ils   72 (73)
                      .|++.+++|.+||||+|+||+++  ++.+|..+|++       |++.|.++|.+++
T Consensus         2 ~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~ls   57 (225)
T KOG1726|consen    2 IRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLS   57 (225)
T ss_pred             eehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999  77889999998       9999999999886

>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]

Probab=98.54  E-value=2.5e-07  Score=66.22  Aligned_cols=65  Identities=15%  Similarity=-0.011  Sum_probs=50.1

Q ss_pred             hhhhhhHhhhhcchhhhHHHHHHHHHHhhhHHHHHHHHHhcCChhhhHHHHH-------HHHHHHHHHhhhc
Q 035087            8 YSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FSIAEVFADKFLT   72 (73)
Q Consensus         8 ~g~vgl~lll~~~~s~i~~~ll~~~iG~~YPAYaS~kAies~~~~d~~qWLt-------f~~vE~~~d~ils   72 (73)
                      .|..+++++..+..+...+-++.|..|+..|++-|.+|++++++.||+|||+       .+.+|.+...+++
T Consensus        41 ~~asf~~l~~lfs~vlG~g~ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~  112 (186)
T COG5052          41 AGASFLYLLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILS  112 (186)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566655554333333499999999999999999999999999999999       6677777766654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00