Citrus Sinensis ID: 035110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MGAEEDQQSEEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGRELFLHEPWVFDNTHY
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHccccEEEccccc
Coil and Loop (DISEMBL)
mgaeedqqseeprgksisqAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVqmngrelflhepwvfdnthy
Flexible Loop (DISEMBL)
mgaeedqqseeprgksisqaqfvswkrqkdADASARKEEAArkraediaagtvqmngrelflhepwvfdnthy
Low Complexity Region (SEG)
MGAEEDQQSEEPRGKSISQAQFVSWKRQkdadasarkeeaarkraediaaGTVQMNGRELFLHEPWVFDNTHY
Disordered region (IsUnstruct)
****************************************************VQMNGRELFLHEPWVFD****
Disordered Region (DISOPRED)
*********************FV****************************TVQMNGRELFLHEPWVFDNTHY
Disordered Region (DISEMBL)
********************************************AEDIAAGTVQMNGRELFLHEPWVFDNTHY
Disordered Region (DISPRO)
*******************AQFVSWKRQKDADASAR************AAGTVQMNGRELFLHEPWVFDNT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAEEDQQSEEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGRELFLHEPWVFDNTHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
255545630	77	conserved hypothetical protein [Ricinus	1.0	0.948	0.753	7e-25
359492827	77	PREDICTED: uncharacterized protein LOC10	1.0	0.948	0.727	7e-24
449445110	80	PREDICTED: uncharacterized protein LOC10	1.0	0.912	0.65	6e-22
356548315	77	PREDICTED: uncharacterized protein LOC10	1.0	0.948	0.701	1e-21
356552859	77	PREDICTED: uncharacterized protein LOC10	1.0	0.948	0.688	6e-21
357489355	74	hypothetical protein MTR_5g061840 [Medic	0.972	0.959	0.722	2e-20
18395077	72	uncharacterized protein [Arabidopsis tha	0.986	1.0	0.630	5e-18
297850666	72	predicted protein [Arabidopsis lyrata su	0.986	1.0	0.630	6e-18
195617354	84	hypothetical protein [Zea mays] gi|19563	1.0	0.869	0.559	3e-17
147791342	887	hypothetical protein VITISV_009508 [Viti	0.575	0.047	0.847	2e-16

>gi|255545630|ref|XP_002513875.1| conserved hypothetical protein [Ricinus communis] gi|223546961|gb|EEF48458.1| conserved hypothetical protein [Ricinus communis]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 65/77 (84%), Gaps = 4/77 (5%)

Query: 1  MGAEEDQQ----SEEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMN 56
          MGAEE+QQ    + +P   SI++ QF+SWKR+KDADASARK E ARKRAEDIAAGTVQMN
Sbjct: 1  MGAEEEQQGKHNNNQPSPNSITEDQFLSWKRRKDADASARKAEVARKRAEDIAAGTVQMN 60

Query: 57 GRELFLHEPWVFDNTHY 73
          GRELFLHEPWVFDNT Y
Sbjct: 61 GRELFLHEPWVFDNTLY 77

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492827|ref|XP_002284238.2| PREDICTED: uncharacterized protein LOC100247155 [Vitis vinifera] gi|302141917|emb|CBI19120.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 62/77 (80%), Gaps = 4/77 (5%)

Query: 1  MGAEEDQQSEE----PRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMN 56
          MGAEE++  E     P    +SQAQF+SWKRQKDAD SAR++EAARKR EDIAAG VQMN
Sbjct: 1  MGAEEEKVQENEKSRPTQNPMSQAQFLSWKRQKDADVSARRDEAARKRVEDIAAGAVQMN 60

Query: 57 GRELFLHEPWVFDNTHY 73
          GRELFLHEPWVFDNT Y
Sbjct: 61 GRELFLHEPWVFDNTRY 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445110|ref|XP_004140316.1| PREDICTED: uncharacterized protein LOC101217114 [Cucumis sativus] gi|449479845|ref|XP_004155725.1| PREDICTED: uncharacterized LOC101217114 [Cucumis sativus]

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 7/80 (8%)

Query: 1  MGAEE-------DQQSEEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTV 53
          MGAEE       +  S  PR   I++AQF+SWKR+KDA+ASA++EE ARKRAEDIA G V
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 54 QMNGRELFLHEPWVFDNTHY 73
          QMNGRELFLH+PWVFDN+ Y
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548315|ref|XP_003542548.1| PREDICTED: uncharacterized protein LOC100306341 [Glycine max]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 61/77 (79%), Gaps = 4/77 (5%)

Query: 1  MGAEEDQQSEEP---RGKS-ISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMN 56
          MGAE +   E+P   R K+ +SQ QF+SWKR KDA  SARK E +RKRAEDIAAGTVQMN
Sbjct: 1  MGAETESSQEKPAQERPKAALSQEQFLSWKRHKDAAVSARKAEVSRKRAEDIAAGTVQMN 60

Query: 57 GRELFLHEPWVFDNTHY 73
          GRELFLHEPWVFDN+ Y
Sbjct: 61 GRELFLHEPWVFDNSRY 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552859|ref|XP_003544780.1| PREDICTED: uncharacterized protein LOC100778362 [Glycine max]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 60/77 (77%), Gaps = 4/77 (5%)

Query: 1  MGAEEDQQSEEP---RGK-SISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMN 56
          MGAE +   E+P   R K ++SQ QF+SWKR KDA  SARK E + KRAEDIAAGTVQMN
Sbjct: 1  MGAETESSQEKPEQERPKPTLSQEQFLSWKRHKDAAVSARKAEVSSKRAEDIAAGTVQMN 60

Query: 57 GRELFLHEPWVFDNTHY 73
          GRELFLHEPWVFDN+ Y
Sbjct: 61 GRELFLHEPWVFDNSRY 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489355|ref|XP_003614965.1| hypothetical protein MTR_5g061840 [Medicago truncatula] gi|355516300|gb|AES97923.1| hypothetical protein MTR_5g061840 [Medicago truncatula]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 60/72 (83%), Gaps = 1/72 (1%)

Query: 1  MGAEEDQQSEE-PRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGRE 59
          MGAE +++ EE P   SI+Q QF+SWKR KDA  SARK E +RKRAEDIAAGTVQMNGRE
Sbjct: 1  MGAESERKEEERPIRASITQDQFLSWKRHKDAAESARKAEQSRKRAEDIAAGTVQMNGRE 60

Query: 60 LFLHEPWVFDNT 71
          LFLHEPWVFD++
Sbjct: 61 LFLHEPWVFDDS 72

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395077|ref|NP_564158.1| uncharacterized protein [Arabidopsis thaliana] gi|16648677|gb|AAL25531.1| At1g22140/F2E2_13 [Arabidopsis thaliana] gi|20334900|gb|AAM16206.1| At1g22140/F2E2_13 [Arabidopsis thaliana] gi|21594642|gb|AAM66029.1| unknown [Arabidopsis thaliana] gi|332192080|gb|AEE30201.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 1  MGAEEDQQSEEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGREL 60
          MGA  + ++ +P   SIS+ QF++WKRQKDA+  A++ EAARKR EDIA+G V MNGREL
Sbjct: 1  MGAG-NGETPKPTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGREL 59

Query: 61 FLHEPWVFDNTHY 73
          FLHEPWVFD+TH+
Sbjct: 60 FLHEPWVFDDTHH 72

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850666|ref|XP_002893214.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297339056|gb|EFH69473.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 1  MGAEEDQQSEEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGREL 60
          MGA+ + +S +P   SIS+ QF +WKRQKDA+  A++ E ARKR EDIA+G V MNGREL
Sbjct: 1  MGAD-NGESPKPTQISISKDQFFAWKRQKDAELLAKQAEVARKRQEDIASGRVPMNGREL 59

Query: 61 FLHEPWVFDNTHY 73
          FLHEPWVFD+TH+
Sbjct: 60 FLHEPWVFDDTHH 72

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195617354|gb|ACG30507.1| hypothetical protein [Zea mays] gi|195639762|gb|ACG39349.1| hypothetical protein [Zea mays]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 11/84 (13%)

Query: 1  MGAEEDQQSEEP-----------RGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIA 49
          MGAEE + +  P           R + IS AQF+SWK++KDA+ + RK EAA+KRA+DIA
Sbjct: 1  MGAEEAEGTPPPLPATGEPATTARAQPISAAQFLSWKQRKDAEVAVRKAEAAQKRADDIA 60

Query: 50 AGTVQMNGRELFLHEPWVFDNTHY 73
          +G VQMNGRELF  EPWVFDN  Y
Sbjct: 61 SGAVQMNGRELFQQEPWVFDNHIY 84

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791342|emb|CAN66052.1| hypothetical protein VITISV_009508 [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/46 (84%), Positives = 42/46 (91%)

Query: 28  QKDADASARKEEAARKRAEDIAAGTVQMNGRELFLHEPWVFDNTHY 73
           Q+DAD SAR++EAARKR EDIAAG VQMNGRELFLHEPWVFDNT Y
Sbjct: 842 QEDADVSARRDEAARKRVEDIAAGAVQMNGRELFLHEPWVFDNTRY 887

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
TAIR|locus:2030596	72	AT1G22140 "AT1G22140" [Arabido	0.986	1.0	0.438	3.5e-11

TAIR|locus:2030596 AT1G22140 "AT1G22140" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 32/73 (43%), Positives = 40/73 (54%)

Query:     1 MGAEEDQQSEEPRGKSISQAQFVSWKRQXXXXXXXXXXXXXXXXXXXXXXGTVQMNGREL 60
             MGA   + + +P   SIS+ QF++WKRQ                      G V MNGREL
Sbjct:     1 MGAGNGE-TPKPTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGREL 59

Query:    61 FLHEPWVFDNTHY 73
             FLHEPWVFD+TH+
Sbjct:    60 FLHEPWVFDDTHH 72


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       73        51   0.00091  102 3  11 23  0.44    27
                                                     29  0.44    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  510 (54 KB)
  Total size of DFA:  94 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.49u 0.12s 5.61t   Elapsed:  00:00:00
  Total cpu time:  5.49u 0.12s 5.61t   Elapsed:  00:00:00
  Start:  Fri May 10 05:43:14 2013   End:  Fri May 10 05:43:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
KOG1763	343	consensus Uncharacterized conserved protein, conta	99.7
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.71
KOG4018	215	consensus Uncharacterized conserved protein, conta	97.47
PF15086	74	UPF0542: Uncharacterised protein family UPF0542	89.31

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=99.70  E-value=1.1e-17  Score=130.33  Aligned_cols=62  Identities=21%  Similarity=0.428  Sum_probs=55.1

Q ss_pred             cCCCCCCccccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhCccccccccccccCCcccccC
Q 035110            7 QQSEEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGRELFLHEPWVFDNT   71 (73)
Q Consensus         7 ~~~~~p~~T~ITle~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~~AG~~~MsGRElF~~~P~lfdd~   71 (73)
                      -+.++||.||||+++|++||++|.+|+++++++..++|+   ++|+--|||||||+++|+||+|-
T Consensus       219 R~~L~~nlT~~T~e~F~~WKk~k~~er~~k~~~~~~~~k---~~gk~~~sGRElF~~~~dl~~dd  280 (343)
T KOG1763|consen  219 RAALGPNLTPLTEETFKAWKKRKIRERKEKLAAEKAERK---KVGKSNMSGRELFESNADLVNDD  280 (343)
T ss_pred             HHhcCCCCccccHHHHHHHHHhhHHHHHHHHHHHHHHhh---hhccCCCchHHHHhhchhhccCc
Confidence            345899999999999999999999999999988888887   57763399999999999999985

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.71  E-value=2.5e-05  Score=60.66  Aligned_cols=63  Identities=17%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             ccCCCCCCccccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhCccccccc-cccccCCcccccC
Q 035110            6 DQQSEEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGR-ELFLHEPWVFDNT   71 (73)
Q Consensus         6 ~~~~~~p~~T~ITle~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~~AG~~~MsGR-ElF~~~P~lfdd~   71 (73)
                      +-++++++.||||.+.|-.||.-.+.....   ++++++-++-.-|+--++|+ |+|+.+-++|-|.
T Consensus       203 eR~~L~~~LTP~TeenFk~Wkd~~~~r~lk---q~ee~~s~Rk~~gr~~~~k~~e~FEt~~d~~~dd  266 (299)
T COG5252         203 ERQSLPEKLTPLTEENFKEWKDGRRLRILK---QKEEKESARKVKGRATGTKGVELFETRRDLFKDD  266 (299)
T ss_pred             HhccCCCcCCcccHHHHHHhccchHHHHHH---HHHHHHhcccchhhhhhccchhhhhccccccccc
Confidence            456799999999999999999776655555   44455555444566556666 9999999988764

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.47  E-value=6.1e-05  Score=56.45  Aligned_cols=51  Identities=20%  Similarity=0.404  Sum_probs=36.3

Q ss_pred             CCCCccccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhCccccccccccccC
Q 035110           10 EEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGRELFLHE   64 (73)
Q Consensus        10 ~~p~~T~ITle~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~~AG~~~MsGRElF~~~   64 (73)
                      ..+-.||||+++|+.||.+=+++...    ...+++.+.++..-..+||.+|..+
T Consensus       138 ~kfhgt~VT~esfl~Wk~~fe~el~~----~~~k~~~~~~~~~~k~tgRQ~f~~d  188 (215)
T KOG4018|consen  138 KKFHGTPVTLESFLEWKLKFEEELLQ----IKAKVKKRLQALAKKLTGRQLFETD  188 (215)
T ss_pred             ccccCCceehhhhHHHHHhhhhhhhh----hhhhhhhHHHHHhhhHHHHHHHHhc
Confidence            45669999999999999999998833    3333333344555567888888754

>PF15086 UPF0542: Uncharacterised protein family UPF0542

Probab=89.31  E-value=0.88  Score=29.60  Aligned_cols=31  Identities=29%  Similarity=0.495  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 035110           19 QAQFVSWKRQKDADASARKEEAARKRAEDIA   49 (73)
Q Consensus        19 le~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~~   49 (73)
                      +.-|++||=.|..|+..+.....+||.+.|+
T Consensus        36 isa~lSwkLaK~ie~~ere~K~k~Kr~~~i~   66 (74)
T PF15086_consen   36 ISAVLSWKLAKAIEKEEREKKKKAKRQANIA   66 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999888888888888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
4a9a_C	142	Translation machinery-associated protein 46; DRG-D	99.41
4a9a_C	142	Translation machinery-associated protein 46; DRG-D	81.29

>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.41  E-value=3.3e-14  Score=99.11  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=37.7

Q ss_pred             CCCccccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhCc-cccccc-cccccCCcccc
Q 035110           11 EPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGT-VQMNGR-ELFLHEPWVFD   69 (73)
Q Consensus        11 ~p~~T~ITle~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~~AG~-~~MsGR-ElF~~~P~lfd   69 (73)
                      ++|.||||+++|+.||++|.+++++.   .++.+++..++|+ +.+||+ +.|.|+|+..+
T Consensus        32 ~~nlTpVT~EtF~~WKk~k~~ek~~~---~~~~~~kk~~tGRei~~~g~~~~~~f~~d~~~   89 (142)
T 4a9a_C           32 KSKLTPITIANFAQWKKDHVIAKINA---EKKLSSKRKPTGREIILKMSAENKSFETDNAD   89 (142)
T ss_dssp             GGGCCCCCHHHHHHHHHHHHHHHHHH---HHHHHTTSCCCHHHHHHHHHHC----------
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhHHHHHhcccccccccccccc
Confidence            45799999999999999999999874   4444445557897 999998 99999998875

>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=81.29  E-value=1.2  Score=30.68  Aligned_cols=49  Identities=16%  Similarity=0.165  Sum_probs=29.5

Q ss_pred             CccccCHHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHhhhCcccccccccccc
Q 035110           13 RGKSISQAQFVSWKRQKDA--------------DASARKEEAARKRAEDIAAGTVQMNGRELFLH   63 (73)
Q Consensus        13 ~~T~ITle~Fl~WKkrK~~--------------Ek~ak~ae~~~kr~~d~~AG~~~MsGRElF~~   63 (73)
                      +...||||.|+.=.+.|.-              =|..|..+-....++.-+  +-.++||+||+.
T Consensus        13 ~~~~ItlEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k~~ek~~~~~~~~~--kk~~tGRei~~~   75 (142)
T 4a9a_C           13 KQPKITLEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAEKKLSS--KRKPTGREIILK   75 (142)
T ss_dssp             SCCCCCHHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCCCHHHHHHH
T ss_pred             cCCcCcHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHh
Confidence            4568999999977666551              123333333333333323  334899999985

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00