Citrus Sinensis ID: 035144

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDETSQHVEATE
Secondary Structure (PSIPRED)
cccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLEtlkhdetsqhveate
Flexible Loop (DISEMBL)
MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTletlkhdetsqhveate
Low Complexity Region (SEG)
MGYVLRVRlasfftgaatasalgLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDETSQHVEATE
Disordered region (IsUnstruct)
**YVLRVRLASFFTGAATASALGLYILHNDYKLAHE************************************
Disordered Region (DISOPRED)
*GYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDR*********************
Disordered Region (DISEMBL)
MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHES************DRRISTLETLKHD**********
Disordered Region (DISPRO)
*GYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLET**************
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDETSQHVEATE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
225455246	72	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.763	1e-22
224135039	72	predicted protein [Populus trichocarpa]	1.0	1.0	0.694	6e-22
297792759	72	hypothetical protein ARALYDRAFT_495444 [	1.0	1.0	0.722	8e-22
255557133	72	conserved hypothetical protein [Ricinus	1.0	1.0	0.680	1e-21
18423537	72	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.708	1e-21
224120964	72	predicted protein [Populus trichocarpa]	1.0	1.0	0.694	2e-21
356509182	72	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.694	2e-21
357464103	66	hypothetical protein MTR_3g092270 [Medic	0.916	1.0	0.757	1e-19
356508372	68	PREDICTED: uncharacterized protein LOC10	0.944	1.0	0.691	1e-18
356516128	72	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.666	9e-18

>gi|225455246|ref|XP_002272716.1| PREDICTED: uncharacterized protein LOC100262248 [Vitis vinifera] gi|302143966|emb|CBI23071.3| unnamed protein product [Vitis vinifera]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 60/72 (83%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MG+VLRVRLASFF GAATAS LGLYILH DYK+AHESIS+Q+K L+ SLD RIS LE LK
Sbjct: 1  MGFVLRVRLASFFAGAATASFLGLYILHKDYKVAHESISRQMKGLNDSLDARISALEKLK 60

Query: 61 HDETSQHVEATE 72
            E SQ VEATE
Sbjct: 61 EVEASQSVEATE 72

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135039|ref|XP_002321968.1| predicted protein [Populus trichocarpa] gi|222868964|gb|EEF06095.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 62/72 (86%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MGYVLRVRLASFF GAATAS  GLY+L+ D+K+AH++ISQQV+S+H+SLDRRIS LE LK
Sbjct: 1  MGYVLRVRLASFFAGAATASFAGLYLLYKDFKVAHDAISQQVESVHESLDRRISALEKLK 60

Query: 61 HDETSQHVEATE 72
           +E SQ ++A E
Sbjct: 61 QNEASQPLQAAE 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792759|ref|XP_002864264.1| hypothetical protein ARALYDRAFT_495444 [Arabidopsis lyrata subsp. lyrata] gi|297310099|gb|EFH40523.1| hypothetical protein ARALYDRAFT_495444 [Arabidopsis lyrata subsp. lyrata]

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 58/72 (80%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MGYVLRVRLASFF GAATAS +GL +L+ DYK+AHESISQQ KS H SLDRRISTLE+L+
Sbjct: 1  MGYVLRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60

Query: 61 HDETSQHVEATE 72
            E  Q  E TE
Sbjct: 61 QTEAPQLAETTE 72

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557133|ref|XP_002519598.1| conserved hypothetical protein [Ricinus communis] gi|223541230|gb|EEF42784.1| conserved hypothetical protein [Ricinus communis]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 57/72 (79%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MGYV RVR+ASFF GAATAS +G Y+L+ DYK+AH+SISQQV+ LH+ LDRRIS LETLK
Sbjct: 1  MGYVFRVRMASFFAGAATASFVGFYVLYKDYKVAHDSISQQVQGLHEGLDRRISALETLK 60

Query: 61 HDETSQHVEATE 72
            E SQ   A E
Sbjct: 61 QTEASQPASAAE 72

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423537|ref|NP_568796.1| uncharacterized protein [Arabidopsis thaliana] gi|9759204|dbj|BAB09741.1| unnamed protein product [Arabidopsis thaliana] gi|21536641|gb|AAM60973.1| unknown [Arabidopsis thaliana] gi|26453175|dbj|BAC43663.1| unknown protein [Arabidopsis thaliana] gi|28416749|gb|AAO42905.1| At5g53650 [Arabidopsis thaliana] gi|332009008|gb|AED96391.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 57/72 (79%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MGYV RVRLASFF GAATAS +GL +L+ DYK+AHESISQQ KS H SLDRRISTLE+L+
Sbjct: 1  MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60

Query: 61 HDETSQHVEATE 72
            E  Q  E TE
Sbjct: 61 QSEAPQLAETTE 72

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120964|ref|XP_002318463.1| predicted protein [Populus trichocarpa] gi|222859136|gb|EEE96683.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 60/72 (83%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MGYVLRVRLASFF GAATAS  GLY+L+ D+K+AH++ISQQV+S H+SLDRRIS LE LK
Sbjct: 1  MGYVLRVRLASFFAGAATASFAGLYLLYQDFKVAHDAISQQVESAHESLDRRISALEKLK 60

Query: 61 HDETSQHVEATE 72
            E  Q ++ATE
Sbjct: 61 QSEAPQPLQATE 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509182|ref|XP_003523330.1| PREDICTED: uncharacterized protein LOC100791640 [Glycine max]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 60/72 (83%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MGYV+RVRLASFFTGAA AS LGLY LH DYK+AH+S +QQ+  LH+SL+ RIS+LE +K
Sbjct: 1  MGYVMRVRLASFFTGAAVASFLGLYTLHKDYKVAHQSFTQQMNDLHKSLEGRISSLEKMK 60

Query: 61 HDETSQHVEATE 72
            ETS+ VEATE
Sbjct: 61 QTETSEQVEATE 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464103|ref|XP_003602333.1| hypothetical protein MTR_3g092270 [Medicago truncatula] gi|355491381|gb|AES72584.1| hypothetical protein MTR_3g092270 [Medicago truncatula] gi|388502214|gb|AFK39173.1| unknown [Medicago truncatula]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 55/66 (83%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MGYVLRVRLASFF GAATAS  GLYILH DYKLAH+S +QQV  L++SLD RIS+LE LK
Sbjct: 1  MGYVLRVRLASFFAGAATASFAGLYILHRDYKLAHQSHTQQVNGLYESLDSRISSLEKLK 60

Query: 61 HDETSQ 66
            ETSQ
Sbjct: 61 QTETSQ 66

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508372|ref|XP_003522931.1| PREDICTED: uncharacterized protein LOC100802049 [Glycine max]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 56/68 (82%)

Query: 5  LRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDET 64
          +RVRLASFFTGAA AS LGLY LH DYK+AH+S +QQ+  LH+SL+ RIS+LE LK  ET
Sbjct: 1  MRVRLASFFTGAAAASFLGLYTLHKDYKVAHQSFTQQMNDLHKSLEGRISSLEKLKQTET 60

Query: 65 SQHVEATE 72
          S+ VEATE
Sbjct: 61 SEQVEATE 68

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516128|ref|XP_003526748.1| PREDICTED: uncharacterized protein LOC100796419 [Glycine max]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 56/72 (77%)

Query: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
          MG V+ VRLASFFTGAA AS LGLY LHNDYKLAH    Q++  LH+SL+ RIS+LE LK
Sbjct: 1  MGCVIGVRLASFFTGAAAASFLGLYSLHNDYKLAHLYYIQRMNGLHKSLESRISSLEKLK 60

Query: 61 HDETSQHVEATE 72
            ETS+ VEAT+
Sbjct: 61 QTETSEQVEATK 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2168671	72	AT5G53650 "AT5G53650" [Arabido	1.0	1.0	0.541	6.9e-15

TAIR|locus:2168671 AT5G53650 "AT5G53650" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 39/72 (54%), Positives = 44/72 (61%)

Query:     1 MGYVLRVRXXXXXXXXXXXXXXXLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
             MGYV RVR               L +L+ DYK+AHESISQQ KS H SLDRRISTLE+L+
Sbjct:     1 MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60

Query:    61 HDETSQHVEATE 72
               E  Q  E TE
Sbjct:    61 QSEAPQLAETTE 72


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.128   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        57   0.00091  102 3  10 22  0.45    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  477 (51 KB)
  Total size of DFA:  96 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.73u 0.10s 11.83t   Elapsed:  00:00:01
  Total cpu time:  11.73u 0.10s 11.83t   Elapsed:  00:00:01
  Start:  Fri May 10 05:55:04 2013   End:  Fri May 10 05:55:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037190001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (72 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	96.07
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	95.2
COG2960	103	Uncharacterized protein conserved in bacteria [Fun	88.21
PF13334	95	DUF4094: Domain of unknown function (DUF4094)	87.56
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	84.78
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	84.25

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=96.07  E-value=0.071  Score=32.34  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035144            9 LASFFTGAATASALGLYI-------LHNDYKLAHESISQQVKSLHQSLDRRI   53 (72)
Q Consensus         9 laSFf~GaA~As~~G~y~-------L~kD~~~ah~~ia~qv~~ly~aL~~RI   53 (72)
                      +.+|++|++++.++|+++       +.++++..-..+..+++++++....+|
T Consensus         2 ~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~   53 (74)
T PF12732_consen    2 LLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKV   53 (74)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999985       677777777777777777776655543

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=95.20  E-value=0.1  Score=30.38  Aligned_cols=41  Identities=22%  Similarity=0.236  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035144            9 LASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKH   61 (72)
Q Consensus         9 laSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~   61 (72)
                      +.||+.|+.++..+++....+-.        .+.    ..++++|+.+|++.+
T Consensus        25 l~~f~~G~llg~l~~~~~~~~~r--------~~~----~~~~k~l~~le~e~~   65 (68)
T PF06305_consen   25 LIAFLLGALLGWLLSLPSRLRLR--------RRI----RRLRKELKKLEKELE   65 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHH----HHHHHHHHHHHHHHH
Confidence            56888888887776665543322        222    367788888887654

>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.21  E-value=3.2  Score=28.45  Aligned_cols=54  Identities=19%  Similarity=0.227  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHH-HHHHHHHH---------------------HHHHHHHHHHhhhhcc
Q 035144            8 RLASFFTGAATASALGLYILHNDYKLAHES-ISQQVKSL---------------------HQSLDRRISTLETLKH   61 (72)
Q Consensus         8 RlaSFf~GaA~As~~G~y~L~kD~~~ah~~-ia~qv~~l---------------------y~aL~~RIsaLE~~~~   61 (72)
                      |+--++.=.....+.+.+-.-+|++.+-.+ +..+.+.|                     .++|+.||++||..-.
T Consensus        15 ~~e~~~~ql~e~~a~~~~~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~   90 (103)
T COG2960          15 RFEDIAAQLSEDAAGAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA   90 (103)
T ss_pred             HHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334445555566666777788888776544 34444333                     8999999999999765

>PF13334 DUF4094: Domain of unknown function (DUF4094)

Probab=87.56  E-value=0.88  Score=29.78  Aligned_cols=51  Identities=31%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhHHH-------------------HHHHHHhHHHHH------HHHHHHHHHH---HHHHHHHHHHhhhh
Q 035144            9 LASFFTGAATASALG-------------------LYILHNDYKLAH------ESISQQVKSL---HQSLDRRISTLETL   59 (72)
Q Consensus         9 laSFf~GaA~As~~G-------------------~y~L~kD~~~ah------~~ia~qv~~l---y~aL~~RIsaLE~~   59 (72)
                      ++||++|.-++.=..                   ++++.+|.....      ..+..||.+-   -.+|||+|+.||+.
T Consensus        10 ~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq~LdKtIS~LEME   88 (95)
T PF13334_consen   10 IASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQSLDKTISSLEME   88 (95)
T ss_pred             HHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999998887332                   233445543222      1122233322   35899999999985

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=84.78  E-value=2.2  Score=29.44  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=27.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144           22 LGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK   60 (72)
Q Consensus        22 ~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~   60 (72)
                      .|-.++..|...+++.+-.+.+    .|+.||.+||++-
T Consensus        59 VG~llvk~~k~~~~~eL~er~E----~Le~ri~tLekQe   93 (119)
T COG1382          59 VGNLLVKVSKEEAVDELEERKE----TLELRIKTLEKQE   93 (119)
T ss_pred             hhhHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            4666777788888888887777    8899999999864

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=84.25  E-value=6.8  Score=23.43  Aligned_cols=49  Identities=12%  Similarity=0.179  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHh
Q 035144            8 RLASFFTGAATASALGLYILHNDYKLAHESISQQVKSL------HQSLDRRISTL   56 (72)
Q Consensus         8 RlaSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~l------y~aL~~RIsaL   56 (72)
                      |+..+++.+.+.++++++..+-++......+++.-+.+      ++.|...|+.|
T Consensus         3 ~l~~~l~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l   57 (85)
T TIGR02209         3 KLYVLLLLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL   57 (85)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888888877776665554443333322211      55555555554

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2pnv_A	43	Small conductance calcium-activated potassium chan	89.45

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=89.45  E-value=0.42  Score=27.09  Aligned_cols=14  Identities=43%  Similarity=0.657  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHhhhh
Q 035144           46 HQSLDRRISTLETL   59 (72)
Q Consensus        46 y~aL~~RIsaLE~~   59 (72)
                      ++.||+||.+||+.
T Consensus        18 ~e~LE~Ri~~LE~K   31 (43)
T 2pnv_A           18 SEDFEKRIVTLETK   31 (43)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            56778888887763

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00