Citrus Sinensis ID: 035178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MPLQQSVEHDERRQLINSNVQDRTSDTKIEEKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mplqqsvehdeRRQLINsnvqdrtsdtKIEEKEAKKEAFRKYLDASGVLDALTKVLAELYeqndkpfsale
Flexible Loop (DISEMBL)
mplqqsvehderrqlinsnvqdrtsdtkieEKEAKKEAFRKYLDASGVLDALTKVLAElyeqndkpfsale
Low Complexity Region (SEG)
MPLQQSVEHDERRQLINSNVQDRTSDTkieekeakkeaFRKYLDASGVLDALTKVLAELYEQNDKPFSALE
Disordered region (IsUnstruct)
**************************************FRKYLDASGVLDALTKVLAELY***********
Disordered Region (DISOPRED)
***********RRQLINSNVQ******************RKYLDASGVLDALTKVLAELY***********
Disordered Region (DISEMBL)
**********ERRQLINSNVQDRTSDTKIEEKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE
Disordered Region (DISPRO)
*********************************AKKEAFRKYLDASGVLDALTKVLAELYEQND*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPLQQSVEHDERRQLINSNVQDRTSDTKIEEKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q54I57	90	C-Myc-binding protein hom	yes	no	0.535	0.422	0.657	6e-07
Q9EQS3	103	C-Myc-binding protein OS=	yes	no	0.521	0.359	0.648	9e-07
Q2TBP7	103	C-Myc-binding protein OS=	yes	no	0.521	0.359	0.648	1e-06
Q99417	103	C-Myc-binding protein OS=	yes	no	0.521	0.359	0.648	1e-06
Q5R7A8	103	C-Myc-binding protein OS=	yes	no	0.521	0.359	0.648	2e-06

>sp|Q54I57|MYCBP_DICDI C-Myc-binding protein homolog OS=Dictyostelium discoideum GN=mycbp PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          A+KE F+ YL+ SGV+DALTKVL  LYE++DKP  ALE
Sbjct: 5  AEKEEFKGYLEKSGVIDALTKVLVGLYEESDKPSDALE 42

Dictyostelium discoideum (taxid: 44689)

>sp|Q9EQS3|MYCBP_MOUSE C-Myc-binding protein OS=Mus musculus GN=Mycbp PE=2 SV=4

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70
          +K+E FR+YL+ SGVLD LTKVL  LYE+ +KP SAL
Sbjct: 9  SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPTSAL 45

May control the transcriptional activity of MYC. Stimulates the activation of E box-dependent transcription by MYC.

Mus musculus (taxid: 10090)

>sp|Q2TBP7|MYCBP_BOVIN C-Myc-binding protein OS=Bos taurus GN=MYCBP PE=3 SV=3

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70
          +K+E FR+YL+ SGVLD LTKVL  LYE+ +KP SAL
Sbjct: 9  SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSAL 45

May control the transcriptional activity of MYC. Stimulates the activation of E box-dependent transcription by MYC.

Bos taurus (taxid: 9913)

>sp|Q99417|MYCBP_HUMAN C-Myc-binding protein OS=Homo sapiens GN=MYCBP PE=1 SV=3

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70
          +K+E FR+YL+ SGVLD LTKVL  LYE+ +KP SAL
Sbjct: 9  SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSAL 45

May control the transcriptional activity of MYC. Stimulates the activation of E box-dependent transcription by MYC.

Homo sapiens (taxid: 9606)

>sp|Q5R7A8|MYCBP_PONAB C-Myc-binding protein OS=Pongo abelii GN=MYCBP PE=3 SV=3

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70
          +K+E FR+YL+ SGVLD LTKVL  LYE+ +KP SAL
Sbjct: 9  SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSAL 45


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,154,089
Number of Sequences: 539616
Number of extensions: 714048
Number of successful extensions: 2984
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2973
Number of HSP's gapped (non-prelim): 16
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

May control the transcriptional activity of MYC. Stimulates the activation of E box-dependent transcription by MYC.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
339716194	109	putative c-myc-binding protein [Tamarix	0.577	0.376	0.853	1e-11
359488039	163	PREDICTED: uncharacterized protein LOC10	0.676	0.294	0.729	1e-11
324388023	109	putative c-myc binding protein [Coffea a	0.577	0.376	0.853	3e-11
167600636	109	hypothetical protein 46C02.4 [Coffea can	0.577	0.376	0.829	1e-10
449530770	110	PREDICTED: c-Myc-binding protein homolog	0.577	0.372	0.804	1e-10
218199208	107	hypothetical protein OsI_25167 [Oryza sa	0.676	0.448	0.666	1e-09
115470937	99	Os07g0185800 [Oryza sativa Japonica Grou	0.577	0.414	0.756	2e-09
242043166	97	hypothetical protein SORBIDRAFT_02g00483	0.577	0.422	0.756	4e-09
225444813	95	PREDICTED: c-Myc-binding protein-like [V	0.605	0.452	0.744	8e-09
297738604	175	unnamed protein product [Vitis vinifera]	0.577	0.234	0.780	1e-08

>gi|339716194|gb|AEJ88336.1| putative c-myc-binding protein [Tamarix hispida]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 38/41 (92%)

Query: 31 EKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          EKEAKKEAFRKYLD+SGV+DALTKVL  LYEQNDKP SA+E
Sbjct: 2  EKEAKKEAFRKYLDSSGVIDALTKVLVALYEQNDKPSSAIE 42

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488039|ref|XP_002271408.2| PREDICTED: uncharacterized protein LOC100251329 [Vitis vinifera]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 43/48 (89%)

Query: 24 TSDTKIEEKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          ++ + ++EKEAKKEAFRKYL++SGVLDALTKVL  LYEQNDKP SA+E
Sbjct: 49 STPSPLQEKEAKKEAFRKYLESSGVLDALTKVLVALYEQNDKPSSAVE 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324388023|gb|ADY38785.1| putative c-myc binding protein [Coffea arabica]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 38/41 (92%)

Query: 31 EKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          EKEAKKEAFRKYLD+SGVLDALTKVL  LYEQ+DKP SA+E
Sbjct: 2  EKEAKKEAFRKYLDSSGVLDALTKVLVALYEQSDKPSSAME 42

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167600636|gb|ABZ89178.1| hypothetical protein 46C02.4 [Coffea canephora] gi|326367378|gb|ADZ55296.1| putative c-myc binding protein [Coffea arabica]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 38/41 (92%)

Query: 31 EKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          EKEAKKEAFRKYL++SGVLDALTKVL  LYEQ+DKP SA+E
Sbjct: 2  EKEAKKEAFRKYLESSGVLDALTKVLVALYEQSDKPSSAME 42

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530770|ref|XP_004172365.1| PREDICTED: c-Myc-binding protein homolog, partial [Cucumis sativus]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 38/41 (92%)

Query: 31 EKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          EKEAKKEAFRKYL+++G++DALTKVL  LYEQNDKP SALE
Sbjct: 1  EKEAKKEAFRKYLESNGIVDALTKVLVALYEQNDKPSSALE 41

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218199208|gb|EEC81635.1| hypothetical protein OsI_25167 [Oryza sativa Indica Group] gi|222636571|gb|EEE66703.1| hypothetical protein OsJ_23368 [Oryza sativa Japonica Group]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 41/48 (85%)

Query: 24 TSDTKIEEKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
           S++  +++EAKKEAFRKYL++SGVLD LTKVL  LYE+NDKP SA+E
Sbjct: 3  VSESMSKDREAKKEAFRKYLESSGVLDTLTKVLVALYEENDKPSSAVE 50

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115470937|ref|NP_001059067.1| Os07g0185800 [Oryza sativa Japonica Group] gi|113610603|dbj|BAF20981.1| Os07g0185800 [Oryza sativa Japonica Group] gi|215693146|dbj|BAG88528.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 37/41 (90%)

Query: 31 EKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          ++EAKKEAFRKYL++SGVLD LTKVL  LYE+NDKP SA+E
Sbjct: 2  DREAKKEAFRKYLESSGVLDTLTKVLVALYEENDKPSSAVE 42

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242043166|ref|XP_002459454.1| hypothetical protein SORBIDRAFT_02g004830 [Sorghum bicolor] gi|241922831|gb|EER95975.1| hypothetical protein SORBIDRAFT_02g004830 [Sorghum bicolor]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 37/41 (90%)

Query: 31 EKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          ++EAKKEAFRKYL++SGVLD LTKVL  LYE+NDKP SA+E
Sbjct: 2  DREAKKEAFRKYLESSGVLDTLTKVLVALYEENDKPSSAVE 42

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444813|ref|XP_002278699.1| PREDICTED: c-Myc-binding protein-like [Vitis vinifera]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 29 IEEKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          + EKEAKKEAFRKYL++SGV DALTKVL  LYEQNDK  S +E
Sbjct: 11 LHEKEAKKEAFRKYLESSGVFDALTKVLVVLYEQNDKASSDVE 53

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738604|emb|CBI27849.3| unnamed protein product [Vitis vinifera]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query: 31  EKEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
           EKEAKKEAFRKYL++SGV DALTKVL  LYEQNDK  S +E
Sbjct: 93  EKEAKKEAFRKYLESSGVFDALTKVLVVLYEQNDKASSDVE 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:504955998	122	AT2G14045 "AT2G14045" [Arabido	0.464	0.270	0.818	2.2e-09
DICTYBASE|DDB_G0288991	90	DDB_G0288991 "unknown" [Dictyo	0.464	0.366	0.666	1e-06
MGI|MGI:1891750	103	Mycbp "c-myc binding protein"	0.464	0.320	0.666	1e-06
RGD|2320727	103	Mycbp "c-myc binding protein"	0.464	0.320	0.666	1e-06
UNIPROTKB|Q2TBP7	103	MYCBP "C-Myc-binding protein"	0.464	0.320	0.666	1.3e-06
UNIPROTKB|J9P9G9	103	MYCBP "Uncharacterized protein	0.464	0.320	0.666	1.3e-06
UNIPROTKB|Q99417	103	MYCBP "C-Myc-binding protein"	0.464	0.320	0.666	1.3e-06
UNIPROTKB|F2Z5W0	103	MYCBP "Uncharacterized protein	0.464	0.320	0.666	1.3e-06
UNIPROTKB|Q5R7A8	103	MYCBP "C-Myc-binding protein"	0.464	0.320	0.666	1.3e-06
ZFIN|ZDB-GENE-060331-97	104	mycbp "c-myc binding protein"	0.464	0.317	0.575	9e-06

TAIR|locus:504955998 AT2G14045 "AT2G14045" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 27/33 (81%), Positives = 30/33 (90%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FRKYL++SGVLD+LTKVL  LYEQNDKP SALE
Sbjct:    15 FRKYLESSGVLDSLTKVLVSLYEQNDKPSSALE 47

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0288991 DDB_G0288991 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             F+ YL+ SGV+DALTKVL  LYE++DKP  ALE
Sbjct:    10 FKGYLEKSGVIDALTKVLVGLYEESDKPSDALE 42

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISS

MGI|MGI:1891750 Mycbp "c-myc binding protein" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FR+YL+ SGVLD LTKVL  LYE+ +KP SAL+
Sbjct:    14 FRRYLEKSGVLDTLTKVLVALYEEPEKPTSALD 46

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

RGD|2320727 Mycbp "c-myc binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FR+YL+ SGVLD LTKVL  LYE+ +KP SAL+
Sbjct:    14 FRRYLEKSGVLDTLTKVLVALYEEPEKPTSALD 46

GO:0003713 "transcription coactivator activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0007283 "spermatogenesis" evidence=IEA;ISO

UNIPROTKB|Q2TBP7 MYCBP "C-Myc-binding protein" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FR+YL+ SGVLD LTKVL  LYE+ +KP SAL+
Sbjct:    14 FRRYLEKSGVLDTLTKVLVALYEEPEKPNSALD 46

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|J9P9G9 MYCBP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FR+YL+ SGVLD LTKVL  LYE+ +KP SAL+
Sbjct:    14 FRRYLEKSGVLDTLTKVLVALYEEPEKPNSALD 46

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

UNIPROTKB|Q99417 MYCBP "C-Myc-binding protein" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FR+YL+ SGVLD LTKVL  LYE+ +KP SAL+
Sbjct:    14 FRRYLEKSGVLDTLTKVLVALYEEPEKPNSALD 46

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0007283 "spermatogenesis" evidence=IEP

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|F2Z5W0 MYCBP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FR+YL+ SGVLD LTKVL  LYE+ +KP SAL+
Sbjct:    14 FRRYLEKSGVLDTLTKVLVALYEEPEKPNSALD 46

GO:0007283 "spermatogenesis" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

UNIPROTKB|Q5R7A8 MYCBP "C-Myc-binding protein" [Pongo abelii (taxid:9601)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FR+YL+ SGVLD LTKVL  LYE+ +KP SAL+
Sbjct:    14 FRRYLEKSGVLDTLTKVLVALYEEPEKPNSALD 46

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

ZFIN|ZDB-GENE-060331-97 mycbp "c-myc binding protein" [Danio rerio (taxid:7955)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query:    39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
             FR+YL+ +GVLD+LT VL  LYE+ +KP +AL+
Sbjct:    14 FRRYLEKAGVLDSLTNVLVALYEETEKPNNALD 46

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002176001 SubName- Full=Chromosome undetermined scaffold_127, whole genome shotgun sequence; (93 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PF05186	42	Dpy-30: Dpy-30 motif; InterPro: IPR007858 This mot	96.72

>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices

Probab=96.72  E-value=0.00066  Score=38.88  Aligned_cols=30  Identities=40%  Similarity=0.550  Sum_probs=24.8

Q ss_pred             HHHHHHhcChHHHHHHHHHHHHhcCCCCCCcCC
Q 035178           39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE   71 (71)
Q Consensus        39 FRKYLE~~GViDaLTKVLV~LYEE~eKP~dalE   71 (71)
                      -|+||++. |+..|++.|..+-  .+||+||++
T Consensus         2 ~r~YL~~~-v~p~L~~gL~~l~--~~rP~DPi~   31 (42)
T PF05186_consen    2 ARQYLKET-VGPVLTEGLAELA--KERPEDPIE   31 (42)
T ss_dssp             HHHHHHHH-THHHHHHHHHHHH--HH--SSHHH
T ss_pred             HHHHHHHH-hHHHHHHHHHHHH--HHCCCChHH
Confidence            48999986 9999999999998  689999974

It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
3g36_A	55	Protein DPY-30 homolog; X-type four-helix bundle,	95.4
4f9k_A	95	CAMP-dependent protein kinase type I-beta regulat	83.48

>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}

Probab=95.40  E-value=0.0049  Score=36.41  Aligned_cols=30  Identities=33%  Similarity=0.496  Sum_probs=26.1

Q ss_pred             HHHHHHhcChHHHHHHHHHHHHhcCCCCCCcCC
Q 035178           39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE   71 (71)
Q Consensus        39 FRKYLE~~GViDaLTKVLV~LYEE~eKP~dalE   71 (71)
                      .|.||++ -|+..|++.|..|-  .+||.||++
T Consensus         9 ~R~YL~~-~V~p~L~~GL~~la--k~rP~DPi~   38 (55)
T 3g36_A            9 TRAYLDQ-TVVPILLQGMAVLA--KERPPNPIE   38 (55)
T ss_dssp             HHHHHHT-TTHHHHHHHHHHHH--HHCCSCHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHH--HhCCCCHHH
Confidence            5899985 59999999999998  688999974

>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A

Probab=83.48  E-value=0.25  Score=32.37  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=27.0

Q ss_pred             HHHHHHHHhcChHHHHHHHHHHHHhcCCCCCCcC
Q 035178           37 EAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL   70 (71)
Q Consensus        37 EEFRKYLE~~GViDaLTKVLV~LYEE~eKP~dal   70 (71)
                      .+=+.||.+.||-+-|-.++|.|..+  ||+||+
T Consensus        38 ~~ce~YlqkhgI~eLLqe~tv~Ll~~--RPeDPv   69 (95)
T 4f9k_A           38 KGCELYVQLHGIQQVLKDCIVHLCIS--KPERPM   69 (95)
T ss_dssp             CTTHHHHHHTCTTTTTHHHHHHHHHH--CCSCHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHH--CCCCHH
Confidence            34578999999999999999998755  888886

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00