Citrus Sinensis ID: 035275

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Secondary Structure (PSIPRED)
cEEEEEEccccEEEEEcccccEEEEEEcccccccEEEEccccEEEEEcccEEEEEEcccccccHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccEEEEEEEccccEEEEEccccccccEEEEccccEEEEEEccEEEEEcccccHcccEEEcc
Coil and Loop (DISEMBL)
mfvisgsgdgsvYAWSVRSGKEVaswmsfdteppvikwtpgslmfvtgsselsfwipdlsklgayvgrk
Flexible Loop (DISEMBL)
mfvisgsgdgsvyAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSselsfwipdlsklgayvgrk
Low Complexity Region (SEG)
MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Disordered region (IsUnstruct)
*************AWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV***
Disordered Region (DISOPRED)
MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK********
Disordered Region (DISEMBL)
********DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Disordered Region (DISPRO)
MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
297735019	522	unnamed protein product [Vitis vinifera]	1.0	0.132	0.942	1e-30
225431149	334	PREDICTED: WD repeat-containing protein	1.0	0.206	0.942	5e-30
147857700	328	hypothetical protein VITISV_020464 [Viti	1.0	0.210	0.942	6e-30
449434162	332	PREDICTED: WD repeat-containing protein	1.0	0.207	0.913	1e-28
449491362	332	PREDICTED: WD repeat-containing protein	1.0	0.207	0.913	1e-28
255579793	332	COMPASS component SWD2, putative [Ricinu	1.0	0.207	0.869	3e-28
356554143	334	PREDICTED: WD repeat-containing protein	1.0	0.206	0.859	1e-26
356563997	334	PREDICTED: WD repeat-containing protein	1.0	0.206	0.830	8e-26
217074372	334	unknown [Medicago truncatula] gi|3885018	1.0	0.206	0.788	5e-24
297797759	331	predicted protein [Arabidopsis lyrata su	1.0	0.208	0.753	1e-21

>gi|297735019|emb|CBI17381.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 66/69 (95%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
           MFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PGSLMFVTGSSELSFWIPDLS
Sbjct: 454 MFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGSLMFVTGSSELSFWIPDLS 513

Query: 61  KLGAYVGRK 69
           KLGAY GRK
Sbjct: 514 KLGAYAGRK 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431149|ref|XP_002268226.1| PREDICTED: WD repeat-containing protein 82-B-like [Vitis vinifera]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 66/69 (95%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
           MFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PGSLMFVTGSSELSFWIPDLS
Sbjct: 266 MFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGSLMFVTGSSELSFWIPDLS 325

Query: 61  KLGAYVGRK 69
           KLGAY GRK
Sbjct: 326 KLGAYAGRK 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857700|emb|CAN80813.1| hypothetical protein VITISV_020464 [Vitis vinifera]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 66/69 (95%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
           MFVISGSGDGSVYAWSVRSGKEVASWMS +TEPPVIKW PGSLMFVTGSSELSFWIPDLS
Sbjct: 260 MFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGSLMFVTGSSELSFWIPDLS 319

Query: 61  KLGAYVGRK 69
           KLGAY GRK
Sbjct: 320 KLGAYAGRK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434162|ref|XP_004134865.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 64/69 (92%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
           MFVISGSGDGSVYAWSVRSGKEVASWMS + EPPVIKW PGSLMF TGSSELSFWIPDLS
Sbjct: 264 MFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIKWAPGSLMFATGSSELSFWIPDLS 323

Query: 61  KLGAYVGRK 69
           KLGAYV RK
Sbjct: 324 KLGAYVDRK 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491362|ref|XP_004158872.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 64/69 (92%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
           MFVISGSGDGSVYAWSVRSGKEVASWMS + EPPVIKW PGSLMF TGSSELSFWIPDLS
Sbjct: 264 MFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIKWAPGSLMFATGSSELSFWIPDLS 323

Query: 61  KLGAYVGRK 69
           KLGAYV RK
Sbjct: 324 KLGAYVDRK 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579793|ref|XP_002530734.1| COMPASS component SWD2, putative [Ricinus communis] gi|223529698|gb|EEF31640.1| COMPASS component SWD2, putative [Ricinus communis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 65/69 (94%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
           MFV+SGSGDGSV+AWSVRSGKEVASWM+++TEP VIKW PGSLMF TGSSELSFWIPDLS
Sbjct: 264 MFVVSGSGDGSVHAWSVRSGKEVASWMTYETEPHVIKWAPGSLMFATGSSELSFWIPDLS 323

Query: 61  KLGAYVGRK 69
           KL AYVGRK
Sbjct: 324 KLAAYVGRK 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554143|ref|XP_003545408.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 64/71 (90%), Gaps = 2/71 (2%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPD 58
           MFVISGSGDGS+YAWSVRSGKEVASW S   DT PPVIKW PGSLMF TGSSELSFW+PD
Sbjct: 264 MFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFATGSSELSFWVPD 323

Query: 59  LSKLGAYVGRK 69
           LSKLG+YVGRK
Sbjct: 324 LSKLGSYVGRK 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563997|ref|XP_003550243.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%), Gaps = 2/71 (2%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPD 58
           MF+ISGSG+GS+YAWSVRSGKEVASW S   DT PPVIKW PGSLMF TGSSELSFW+PD
Sbjct: 264 MFIISGSGEGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFATGSSELSFWVPD 323

Query: 59  LSKLGAYVGRK 69
           LSKLG+YVGRK
Sbjct: 324 LSKLGSYVGRK 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074372|gb|ACJ85546.1| unknown [Medicago truncatula] gi|388501886|gb|AFK39009.1| unknown [Medicago truncatula]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 62/71 (87%), Gaps = 2/71 (2%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPD 58
           MFVIS SGDGS+YAWSVRSGKEVASW S   D  PPV+KW PGSLMF TGSSELSFW+PD
Sbjct: 264 MFVISSSGDGSIYAWSVRSGKEVASWRSATSDIGPPVVKWAPGSLMFATGSSELSFWVPD 323

Query: 59  LSKLGAYVGRK 69
           LSK+GA+VG+K
Sbjct: 324 LSKIGAFVGKK 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797759|ref|XP_002866764.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312599|gb|EFH43023.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 57/69 (82%)

Query: 1   MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
           MFV+SGSGDGS +AW VRSGK+V SWM   +EPPVIKW PGS MFVTGSSEL+F IPDLS
Sbjct: 263 MFVVSGSGDGSTHAWGVRSGKQVHSWMGIGSEPPVIKWAPGSPMFVTGSSELAFVIPDLS 322

Query: 61  KLGAYVGRK 69
           KL AY  RK
Sbjct: 323 KLPAYAIRK 331

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2154996	331	AT5G66240 "AT5G66240" [Arabido	1.0	0.208	0.753	1.8e-23
TAIR|locus:2222612	330	AT5G14530 "AT5G14530" [Arabido	0.826	0.172	0.438	1.6e-09
DICTYBASE|DDB_G0278945	319	DDB_G0278945 "WD repeat-contai	0.884	0.191	0.426	4.2e-09
CGD|CAL0004633	458	orf19.7343 [Candida albicans (	0.855	0.128	0.372	5.2e-05
UNIPROTKB|Q5A3W6	458	PRP4 "Potential spliceosomal U	0.855	0.128	0.372	5.2e-05
FB|FBgn0032030	317	Wdr82 [Drosophila melanogaster	0.797	0.173	0.327	0.00022
UNIPROTKB|Q5ZMV7	313	WDR82 "WD repeat-containing pr	0.840	0.185	0.305	0.00027
UNIPROTKB|E2RGF2	313	WDR82 "Uncharacterized protein	0.840	0.185	0.305	0.00045
UNIPROTKB|Q6UXN9	313	WDR82 "WD repeat-containing pr	0.840	0.185	0.305	0.00045
UNIPROTKB|F2Z5U3	313	WDR82 "Uncharacterized protein	0.840	0.185	0.305	0.00045

TAIR|locus:2154996 AT5G66240 "AT5G66240" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 52/69 (75%), Positives = 57/69 (82%)

Query:     1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 60
             MFV+SGSGDGS +AW VRSGK+V SWM   +EPPVIKW PGS MFVTGSSEL+F IPDLS
Sbjct:   263 MFVVSGSGDGSTHAWGVRSGKQVHSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPDLS 322

Query:    61 KLGAYVGRK 69
             KL AY  RK
Sbjct:   323 KLPAYAIRK 331

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2222612 AT5G14530 "AT5G14530" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query:     2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 58
             +V+SGSGDG+++AW++ +  EVA W +       +KW P   MFV  S+ L+FWIP+
Sbjct:   258 YVLSGSGDGTLHAWNIENPSEVARWENNIGVVSCLKWAPRRAMFVAASTVLTFWIPN 314

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)]

 Score = 140 (54.3 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query:     2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61
             +V+SGS DG+V+ W   +G+EVA W    +    ++W P S+M  T  S L+FWIP+ S 
Sbjct:   259 YVLSGSEDGTVHIWKTLTGEEVAVWGGHSSTVGRVQWNPRSMMAATACSNLAFWIPNDSV 318

Query:    62 L 62
             L
Sbjct:   319 L 319

GO:0030587 "sorocarp development" evidence=IMP

CGD|CAL0004633 orf19.7343 [Candida albicans (taxid:5476)]

 Score = 105 (42.0 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query:     4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62
             +SG  DG V+ W +RSG+ + +          + W+P    FVTGS + S  I DL KL
Sbjct:   286 MSGGLDGIVHIWDLRSGRSIVTLQKHMAGVYCLDWSPNGYQFVTGSGDCSLKIWDLRKL 344

GO:0003674 "molecular_function" evidence=ND

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

UNIPROTKB|Q5A3W6 PRP4 "Potential spliceosomal U4/U6 snRNP protein Prp4p" [Candida albicans SC5314 (taxid:237561)]

 Score = 105 (42.0 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query:     4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 62
             +SG  DG V+ W +RSG+ + +          + W+P    FVTGS + S  I DL KL
Sbjct:   286 MSGGLDGIVHIWDLRSGRSIVTLQKHMAGVYCLDWSPNGYQFVTGSGDCSLKIWDLRKL 344

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0032030 Wdr82 [Drosophila melanogaster (taxid:7227)]

 Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query:     2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV--IKWTPGSLMFVTGSSELSFWIP 57
             F+ SGS DG V+ W+  +G +V S ++ D   PV  +++ P  +M  +  + ++FW+P
Sbjct:   255 FIFSGSTDGRVHIWNADTGNKV-SVLNGDHPGPVQCVQFNPKYMMLASACTNMAFWLP 311

GO:0008352 "katanin complex" evidence=ISS

GO:0051013 "microtubule severing" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0035097 "histone methyltransferase complex" evidence=IDA

UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)]

 Score = 96 (38.9 bits), Expect = 0.00027, P = 0.00027
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query:     2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 59
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   253 FIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 94 (38.1 bits), Expect = 0.00045, P = 0.00045
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query:     2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 59
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   253 FIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 0.00045, P = 0.00045
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query:     2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 59
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   253 FIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0003682 "chromatin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 0.00045, P = 0.00045
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query:     2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDL 59
             F++ GS DG ++ W+  SG +VA      T P   +++ P  + F +  S ++FW+P +
Sbjct:   253 FIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTI 311

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.4
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.4
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.4
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.33
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.3
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.28
KOG0266	456	consensus WD40 repeat-containing protein [General	99.27
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.27
KOG0289	506	consensus mRNA splicing factor [General function p	99.27
PTZ00421	493	coronin; Provisional	99.27
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.23
KOG0266	456	consensus WD40 repeat-containing protein [General	99.22
KOG0286	343	consensus G-protein beta subunit [General function	99.2
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.2
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.17
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.17
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.16
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.15
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.14
KOG1273	405	consensus WD40 repeat protein [General function pr	99.14
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.13
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.12
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.11
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.1
KOG0286	343	consensus G-protein beta subunit [General function	99.1
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.09
PTZ00421	493	coronin; Provisional	99.06
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.05
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.05
PLN00181	793	protein SPA1-RELATED; Provisional	99.04
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.03
KOG0645	312	consensus WD40 repeat protein [General function pr	99.02
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.02
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.01
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.01
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.0
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	98.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.96
KOG0643	327	consensus Translation initiation factor 3, subunit	98.95
PTZ00420	568	coronin; Provisional	98.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.92
PTZ00420	568	coronin; Provisional	98.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.89
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	98.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.89
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.88
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	98.88
KOG0296	399	consensus Angio-associated migratory cell protein	98.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.87
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.86
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.85
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.83
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	98.81
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.8
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.8
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.79
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.77
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.76
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.76
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.75
KOG0296	399	consensus Angio-associated migratory cell protein	98.75
KOG0295	406	consensus WD40 repeat-containing protein [Function	98.75
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.75
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.74
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.74
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.74
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	98.74
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.73
KOG0639	705	consensus Transducin-like enhancer of split protei	98.73
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.73
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.72
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.69
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	98.68
KOG0267	825	consensus Microtubule severing protein katanin p80	98.68
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.67
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.66
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.66
PLN00181	793	protein SPA1-RELATED; Provisional	98.66
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.65
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.63
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.61
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.61
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.6
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.6
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.59
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.59
KOG0647	347	consensus mRNA export protein (contains WD40 repea	98.59
KOG1310	758	consensus WD40 repeat protein [General function pr	98.59
KOG0641	350	consensus WD40 repeat protein [General function pr	98.58
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.57
KOG0647	347	consensus mRNA export protein (contains WD40 repea	98.57
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.55
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.55
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	98.54
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.54
KOG0646	476	consensus WD40 repeat protein [General function pr	98.52
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.51
KOG0316	307	consensus Conserved WD40 repeat-containing protein	98.51
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.5
KOG1274	933	consensus WD40 repeat protein [General function pr	98.49
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.48
KOG0645	312	consensus WD40 repeat protein [General function pr	98.47
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.47
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.45
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.43
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.42
KOG0643	327	consensus Translation initiation factor 3, subunit	98.41
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.4
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.4
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.39
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.38
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.38
KOG0772	641	consensus Uncharacterized conserved protein, conta	98.37
KOG0267	825	consensus Microtubule severing protein katanin p80	98.36
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.35
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.35
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.33
KOG1539	910	consensus WD repeat protein [General function pred	98.33
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.31
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.31
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.31
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.31
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.3
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.29
KOG1310	758	consensus WD40 repeat protein [General function pr	98.27
KOG4328	498	consensus WD40 protein [Function unknown]	98.27
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.26
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.26
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.26
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.26
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.25
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.25
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.24
KOG0772	641	consensus Uncharacterized conserved protein, conta	98.23
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.23
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.23
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.18
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.18
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.15
KOG2096	420	consensus WD40 repeat protein [General function pr	98.15
KOG1539	910	consensus WD repeat protein [General function pred	98.14
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.14
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.14
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.13
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.13
KOG1334	559	consensus WD40 repeat protein [General function pr	98.12
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.1
KOG0649	325	consensus WD40 repeat protein [General function pr	98.08
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.07
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.06
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.06
KOG0641	350	consensus WD40 repeat protein [General function pr	98.03
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.02
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.0
KOG1188	376	consensus WD40 repeat protein [General function pr	97.97
KOG0644	1113	consensus Uncharacterized conserved protein, conta	97.96
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	97.95
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.91
KOG0289	506	consensus mRNA splicing factor [General function p	97.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	97.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	97.88
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.88
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.87
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	97.87
KOG0646	476	consensus WD40 repeat protein [General function pr	97.87
KOG2096	420	consensus WD40 repeat protein [General function pr	97.83
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.82
KOG1188	376	consensus WD40 repeat protein [General function pr	97.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	97.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	97.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	97.77
KOG2048	691	consensus WD40 repeat protein [General function pr	97.77
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.74
KOG2055	514	consensus WD40 repeat protein [General function pr	97.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.7
KOG4328	498	consensus WD40 protein [Function unknown]	97.7
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	97.69
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.67
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	97.67
KOG4227	609	consensus WD40 repeat protein [General function pr	97.6
KOG1063	764	consensus RNA polymerase II elongator complex, sub	97.59
KOG2321	703	consensus WD40 repeat protein [General function pr	97.55
COG2319	466	FOG: WD40 repeat [General function prediction only	97.54
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.53
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.49
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	97.48
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.48
KOG1274	933	consensus WD40 repeat protein [General function pr	97.46
KOG1963	792	consensus WD40 repeat protein [General function pr	97.45
KOG2055	514	consensus WD40 repeat protein [General function pr	97.4
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.4
KOG0639	705	consensus Transducin-like enhancer of split protei	97.39
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.38
KOG1063	764	consensus RNA polymerase II elongator complex, sub	97.36
KOG2048	691	consensus WD40 repeat protein [General function pr	97.35
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.34
KOG4547	541	consensus WD40 repeat-containing protein [General	97.32
KOG0649	325	consensus WD40 repeat protein [General function pr	97.31
COG2319	466	FOG: WD40 repeat [General function prediction only	97.29
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.28
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	97.27
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.26
KOG4547	541	consensus WD40 repeat-containing protein [General	97.25
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.21
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.2
KOG2139	445	consensus WD40 repeat protein [General function pr	97.15
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.14
KOG1963	792	consensus WD40 repeat protein [General function pr	97.1
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.07
KOG4227	609	consensus WD40 repeat protein [General function pr	97.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.06
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.06
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.03
PRK01742	429	tolB translocation protein TolB; Provisional	96.95
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	96.95
KOG2111	346	consensus Uncharacterized conserved protein, conta	96.89
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	96.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	96.85
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.85
KOG1273	405	consensus WD40 repeat protein [General function pr	96.75
KOG2139	445	consensus WD40 repeat protein [General function pr	96.67
KOG2315	566	consensus Predicted translation initiation factor	96.65
COG4946	668	Uncharacterized protein related to the periplasmic	96.64
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	96.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	96.62
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	96.62
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.6
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.45
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	96.42
PRK01742	429	tolB translocation protein TolB; Provisional	96.41
KOG2695	425	consensus WD40 repeat protein [General function pr	96.41
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.4
PRK05137	435	tolB translocation protein TolB; Provisional	96.25
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.18
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.92
PRK02889	427	tolB translocation protein TolB; Provisional	95.88
PRK11028	330	6-phosphogluconolactonase; Provisional	95.83
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	95.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	95.74
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	95.67
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	95.54
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	95.52
PRK11028	330	6-phosphogluconolactonase; Provisional	95.5
PRK05137	435	tolB translocation protein TolB; Provisional	95.49
PRK03629	429	tolB translocation protein TolB; Provisional	95.45
PRK04922	433	tolB translocation protein TolB; Provisional	95.33
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	95.31
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.23
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	95.12
PRK02889	427	tolB translocation protein TolB; Provisional	95.05
PRK04922	433	tolB translocation protein TolB; Provisional	95.05
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	94.99
KOG2395	644	consensus Protein involved in vacuole import and d	94.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	94.78
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	94.74
KOG2321	703	consensus WD40 repeat protein [General function pr	94.72
KOG2695	425	consensus WD40 repeat protein [General function pr	94.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.67
PRK03629	429	tolB translocation protein TolB; Provisional	94.66
PRK04792	448	tolB translocation protein TolB; Provisional	94.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.26
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.08
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.03
PRK00178	430	tolB translocation protein TolB; Provisional	93.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	93.96
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	93.79
KOG2444	238	consensus WD40 repeat protein [General function pr	93.58
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.26
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.15
PRK04792	448	tolB translocation protein TolB; Provisional	93.07
KOG1334	559	consensus WD40 repeat protein [General function pr	92.85
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.29
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	92.29
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	92.14
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	92.09
KOG3621	726	consensus WD40 repeat-containing protein [General	91.99
PRK00178	430	tolB translocation protein TolB; Provisional	91.94
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	91.73
COG4946	668	Uncharacterized protein related to the periplasmic	91.52
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.71
KOG4532	344	consensus WD40-like repeat containing protein [Gen	90.54
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	90.43
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	90.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	89.94
KOG1912	1062	consensus WD40 repeat protein [General function pr	89.78
PRK01029	428	tolB translocation protein TolB; Provisional	89.47
COG5167	776	VID27 Protein involved in vacuole import and degra	89.38
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	88.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	87.95
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.29
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	87.11
KOG1912	1062	consensus WD40 repeat protein [General function pr	86.85
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.42
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	85.9
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	85.54
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	85.38
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	85.27
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	85.26
PRK01029	428	tolB translocation protein TolB; Provisional	84.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	84.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	84.41
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	84.23
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	84.08
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	83.31
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	83.14
KOG0280	339	consensus Uncharacterized conserved protein [Amino	82.54
PRK04043	419	tolB translocation protein TolB; Provisional	81.89
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	81.75
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.96
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	80.72

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.6e-12  Score=71.41  Aligned_cols=63  Identities=38%  Similarity=0.729  Sum_probs=56.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeC-CCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      +++++|+.||+|.+|++.++..+..+.+ +.+++.|+.|+|...++++++..+.+|.++...+.
T Consensus       245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~~  308 (311)
T KOG1446|consen  245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDALP  308 (311)
T ss_pred             cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccccC
Confidence            5789999999999999999998888877 68899999999999999999999999999876654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.40  E-value=7.5e-13  Score=76.22  Aligned_cols=58  Identities=33%  Similarity=0.648  Sum_probs=50.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-CcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~--~~~~~~~~   58 (69)
                      ++++||++|++|+||+..+++++..+.+|...|+||+|+|. ..|+||++.  .++||-+.
T Consensus       453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            37899999999999999999999999999999999999995 568999854  47787654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.40  E-value=9.1e-13  Score=79.44  Aligned_cols=60  Identities=23%  Similarity=0.417  Sum_probs=53.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .|+++||.|.+|++||+.+|..+..+.+|.++|.+++|+|.|..+++|+.+..|.+||+.
T Consensus       548 ~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  548 NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            378999999999999999999888899999999999999999999999877555555554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.33  E-value=9.8e-12  Score=68.66  Aligned_cols=59  Identities=17%  Similarity=0.377  Sum_probs=52.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      ++++++++|+.+++||+.+++...++.+|...|.+++|+|+...+++++.+..+-+|++
T Consensus        76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            47899999999999999999888889999999999999999999999977766655554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=2e-11  Score=69.34  Aligned_cols=62  Identities=23%  Similarity=0.430  Sum_probs=51.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCCcCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGA   64 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~~~~   64 (69)
                      +++.+++.|++|++||+.++..+..+.+|..-|..++|+|.|.+++|+.++  +++|.  .+....
T Consensus       305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd--l~~~~c  368 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD--LKNLQC  368 (406)
T ss_pred             cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE--ecccee
Confidence            368999999999999999999899999999999999999999999988444  56654  444333

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.28  E-value=1.3e-11  Score=70.73  Aligned_cols=57  Identities=21%  Similarity=0.527  Sum_probs=51.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .+++|+.|.++++||.++..++....+|..=|.|++|+|++..+++|+.  +|++|.+.
T Consensus       129 ~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  129 RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            6899999999999999999999999999999999999999999999955  46666543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.27  E-value=4.2e-11  Score=70.30  Aligned_cols=57  Identities=26%  Similarity=0.529  Sum_probs=50.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      +.++||+.|++|++||+.+++....+.+|..+|.+++|++++..+++++.+  +++|..
T Consensus       259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~  317 (456)
T KOG0266|consen  259 NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL  317 (456)
T ss_pred             CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence            468999999999999999999899999999999999999999999998655  555543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.27  E-value=1.6e-11  Score=67.84  Aligned_cols=60  Identities=17%  Similarity=0.318  Sum_probs=51.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +++++++|++|++||+++-+....+.+|.+.++.+.++|+|..+++|..+..+.+||.+.
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence            589999999999999988877777899999999999999999999997765555555554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.27  E-value=1.5e-11  Score=71.21  Aligned_cols=65  Identities=23%  Similarity=0.351  Sum_probs=56.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCccc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV   66 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~   66 (69)
                      .|.+|..||.|+|||+.++.....+.+|.++|..++|+.+|..++++.++..+.+||.+++..++
T Consensus       361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k  425 (506)
T KOG0289|consen  361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK  425 (506)
T ss_pred             EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence            36789999999999999888888899999999999999999999998666556777788777654

>PTZ00421 coronin; Provisional

Probab=99.27  E-value=5.5e-11  Score=70.47  Aligned_cols=59  Identities=22%  Similarity=0.335  Sum_probs=49.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .+++++.|+.|++||+.++.....+.+|...|.+++|+|++..+++++.+..+.+||.+
T Consensus       140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r  198 (493)
T PTZ00421        140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR  198 (493)
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence            68999999999999999888777888999999999999999999988665444444443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.23  E-value=2.1e-11  Score=73.72  Aligned_cols=56  Identities=16%  Similarity=0.410  Sum_probs=50.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~   56 (69)
                      ++|++|++||.|++||+.++..+..+.+|++-+..+.|+.++.++++++.  ++++|.
T Consensus       590 r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  590 RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            58999999999999999999999999999999999999999999999854  577764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=8.3e-11  Score=69.05  Aligned_cols=57  Identities=21%  Similarity=0.563  Sum_probs=48.7

Q ss_pred             EEEEEeCCCcEEEEEC-CCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            2 FVISGSGDGSVYAWSV-RSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~-~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      ++++++.|+++++||+ ..+..+..+.+|...|.+++|+|++.++++++.+  +++|...
T Consensus       217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            6899999999999999 4457788999999999999999999999998555  6666544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.20  E-value=1e-10  Score=65.15  Aligned_cols=61  Identities=28%  Similarity=0.470  Sum_probs=55.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +.++||+.|+..++||++.+.....+.+|...|+.|+|.|++.-|++|+++....++|++.
T Consensus       200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            4789999999999999999987778899999999999999999999998888888887764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.20  E-value=1.2e-10  Score=64.11  Aligned_cols=59  Identities=20%  Similarity=0.545  Sum_probs=50.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~   60 (69)
                      .+++|++|+.++.||..++..+... .+|.++|.|++|+|++...++|+++  +++|+....
T Consensus       238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence            5788999999999999999887776 8999999999999999999999665  777765443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.17  E-value=2.8e-11  Score=69.71  Aligned_cols=62  Identities=16%  Similarity=0.259  Sum_probs=54.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      .+++|+.||++++|++++..++..+.+|..+|..|+|+|+|.+++|++-+....+||++.-.
T Consensus       233 ~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~  294 (459)
T KOG0272|consen  233 NLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS  294 (459)
T ss_pred             ceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch
Confidence            58999999999999999888888999999999999999999999999777666667666433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.17  E-value=9.4e-11  Score=67.62  Aligned_cols=63  Identities=25%  Similarity=0.379  Sum_probs=52.2

Q ss_pred             EEEEEeCCCcEEEEECCC--CceEEEEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCCCcCc
Q 035275            2 FVISGSGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~--~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      .|.++++|+.+.+||.++  .+......+|.+.+.|++|+|- +.++|+++.+.++.+||.++|.+
T Consensus       242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~  307 (422)
T KOG0264|consen  242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK  307 (422)
T ss_pred             hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence            578899999999999994  4445566899999999999995 56788888888888888887765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.16  E-value=1.2e-10  Score=63.90  Aligned_cols=59  Identities=20%  Similarity=0.361  Sum_probs=47.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++.+|++||+++|||++... ....-.|.++|+++..+|+...++++|.+.+||+||+.
T Consensus        96 rWMyTgseDgt~kIWdlR~~~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   96 RWMYTGSEDGTVKIWDLRSLS-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             eEEEecCCCceEEEEeccCcc-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence            367899999999999998732 33345677999999999998889999888777777754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.15  E-value=1.1e-10  Score=67.39  Aligned_cols=59  Identities=20%  Similarity=0.381  Sum_probs=50.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~   60 (69)
                      .+++|+-|..-++||++++..+..+.+|.+.|..|.|+|+|..+++|+.+  +++|..+..
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r  377 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR  377 (459)
T ss_pred             eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence            46889999999999999999998999999999999999999999998655  666654433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.14  E-value=6.2e-11  Score=65.36  Aligned_cols=59  Identities=12%  Similarity=0.161  Sum_probs=52.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      +-++++++|++|++|+.++.+++..+..|.+.|++++|+|+..++++++.+.+|-+|+.
T Consensus       264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            35899999999999999999999999999999999999999888998877766666643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=1.1e-10  Score=65.80  Aligned_cols=59  Identities=15%  Similarity=0.225  Sum_probs=51.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++++|+.||.|.|||..+......+.+|..+|.+++|++++..+.+++.+-.+-+||+.
T Consensus        37 ~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~   95 (405)
T KOG1273|consen   37 YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL   95 (405)
T ss_pred             eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence            68999999999999999988777789999999999999999999998877555556554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=2e-10  Score=65.96  Aligned_cols=57  Identities=21%  Similarity=0.407  Sum_probs=50.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      ++++||+.|.++++|++++.+....+++|...|.++.|+|+|..++++..+..+.+|
T Consensus       422 RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            478999999999999999998778899999999999999999999999777554444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=3.1e-10  Score=70.53  Aligned_cols=59  Identities=24%  Similarity=0.445  Sum_probs=50.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~~~   62 (69)
                      +++|+|+|.+|+||+..+++.+..+.+|.+-|.|.+|.|....++|++-  .+++|  |+..|
T Consensus       107 WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW--DisGL  167 (1202)
T KOG0292|consen  107 WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW--DISGL  167 (1202)
T ss_pred             eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE--eecch
Confidence            5899999999999999999999999999999999999998888888854  46665  45433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.11  E-value=3.3e-10  Score=68.79  Aligned_cols=56  Identities=13%  Similarity=0.310  Sum_probs=49.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      +.+++||+|.+.++|+++.......+.+|+..+-||+|+|....+++++.|  +.||.
T Consensus       476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence            368999999999999999888888999999999999999998888877555  66665

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.10  E-value=7.7e-10  Score=64.68  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=51.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .+++++.|++|++||+..+.++..++.|..+|..++|+|++..+++|+.+..+..|+..
T Consensus       424 ~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  424 MLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             eEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence            37889999999999999999999999999999999999999999999776555545444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.10  E-value=6.6e-10  Score=62.03  Aligned_cols=60  Identities=20%  Similarity=0.433  Sum_probs=52.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      .+++++.|.++.+||+++++....+.+|.+.|.+++++| +++.+++++-+....+||++.
T Consensus       158 ~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  158 HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            588999999999999999999999999999999999999 889999986665555566553

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.09  E-value=4.7e-10  Score=64.28  Aligned_cols=62  Identities=27%  Similarity=0.476  Sum_probs=49.9

Q ss_pred             EEEEEeCCCcEEEEECCCCce--EEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      .|+||++||.|.|||++.++.  ......|.+-|+.++|+....++++|+.+..+-+||++.++
T Consensus       272 vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~  335 (440)
T KOG0302|consen  272 VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK  335 (440)
T ss_pred             eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc
Confidence            489999999999999998732  33348899999999999988899999877666666665443

>PTZ00421 coronin; Provisional

Probab=99.06  E-value=1.6e-09  Score=64.40  Aligned_cols=57  Identities=11%  Similarity=0.401  Sum_probs=44.9

Q ss_pred             EEEEEeCCCcEEEEECCCCc-------eEEEEeCCCCCCeEEEEcCCC-cEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-------EVASWMSFDTEPPVIKWTPGS-LMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-------~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~--~~~~~~~~   58 (69)
                      .|++|+.|+.|++||+.++.       .+..+.+|...|.+++|+|.. .++++++.  .+++|..+
T Consensus        90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~  156 (493)
T PTZ00421         90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE  156 (493)
T ss_pred             EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence            68999999999999997642       356778999999999999975 57777644  46666544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.05  E-value=1.9e-10  Score=66.30  Aligned_cols=63  Identities=27%  Similarity=0.420  Sum_probs=57.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      .++||+.|..|++||.+++..+.++.+|...|..+.|+|+++.+++++.|-.+-++|++.+++
T Consensus       236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence            589999999999999999998999999999999999999999999999888888888875554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.05  E-value=1.2e-09  Score=62.66  Aligned_cols=59  Identities=24%  Similarity=0.636  Sum_probs=46.5

Q ss_pred             EEEEEeCCCcEEEEECCC---CceEEEEeCCCCCCeEEEEcCCC--cEEEEc-CCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRS---GKEVASWMSFDTEPPVIKWTPGS--LMFVTG-SSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~---~~~~~~~~~~~~~v~~v~~~~~~--~~~~s~-~~~~~~~~~~~~   60 (69)
                      +|++|++||++.|||++.   +.++..+..|.++|.++.|+|..  .+.+++ |.++.+|...++
T Consensus       316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            589999999999999975   45677889999999999999864  344444 566999964443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.04  E-value=2.2e-09  Score=66.47  Aligned_cols=56  Identities=20%  Similarity=0.382  Sum_probs=47.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcCCc--EEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~--~~~~~~   57 (69)
                      ++++++.||.|.+||+.+++.+..+.+|.+.|.+++|+| ++..+++++.+  +++|..
T Consensus       547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence            588999999999999998888888899999999999997 67788888555  566543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.03  E-value=1.8e-09  Score=66.08  Aligned_cols=61  Identities=18%  Similarity=0.364  Sum_probs=50.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +++++|++||+|++||..++-...++..|+..|..++|...+..+.+++-+.++..||+..
T Consensus       363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            4789999999999999999988889999999999999999998888875554444455443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=2.8e-09  Score=59.03  Aligned_cols=60  Identities=25%  Similarity=0.462  Sum_probs=52.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++|++++.|.++.||.-..+.  .+..+.+|...|.|++|++++.++|+++.+.-+|.|+..
T Consensus        74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            579999999999999987664  355679999999999999999999999999888888765

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.02  E-value=1.4e-09  Score=62.25  Aligned_cols=59  Identities=10%  Similarity=0.250  Sum_probs=49.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~   59 (69)
                      ++|++|+.|++++|||+.++....++.+|-..|..+++++....+.++..+  +..|....
T Consensus       164 ~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  164 EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            378999999999999999999888999999999999999988777777544  66664433

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=1e-09  Score=60.04  Aligned_cols=55  Identities=22%  Similarity=0.388  Sum_probs=48.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~   56 (69)
                      .+++|+.|..|.+||+.+|+....+.+|.++|+.++|+.+...+++++-  .+++|.
T Consensus        73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD  129 (307)
T ss_pred             ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence            3788999999999999999999999999999999999999889999854  566664

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.01  E-value=1.4e-09  Score=62.75  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=51.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      .|+++++||.|+|||....+....+.+|.-.|.+++|+|....+++++.+-.+-+||.+.-.
T Consensus       194 kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  194 KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            37899999999999998888788889999999999999999999998666455555555433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.00  E-value=1.5e-09  Score=62.79  Aligned_cols=62  Identities=21%  Similarity=0.499  Sum_probs=48.8

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      .|++|+.|++|.+||+++-+ .+..+.+|...|.+|.|+|.. .+++|++.+.++.+||+.+..
T Consensus       287 ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  287 ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            48999999999999998753 467789999999999999975 567777666665566655443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=2.8e-09  Score=58.74  Aligned_cols=57  Identities=18%  Similarity=0.397  Sum_probs=46.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-CcEEEEcCCc--EEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~--~~~~~~~   58 (69)
                      .++++++|++|++|+...++.+.++.+|+..|...+|+|. ..++++++++  .++|..+
T Consensus       119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen  119 IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             eEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            3667799999999999888889999999999999999985 5677776555  6666544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.96  E-value=6.2e-09  Score=58.99  Aligned_cols=58  Identities=21%  Similarity=0.345  Sum_probs=48.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE---eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW---MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      ++++++|.|..|++|++.+...+..+   .+|++.|.++.|++++..++|++.+  +++|..+
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            47999999999999999988765554   6899999999999999999998554  6666544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=4.9e-09  Score=57.80  Aligned_cols=64  Identities=25%  Similarity=0.361  Sum_probs=51.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCCCcCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      +.+++++.||.+++||++.......+..|...+.|+.|+. +..++++++.+..+..||++.+++
T Consensus       161 nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~  225 (311)
T KOG0277|consen  161 NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT  225 (311)
T ss_pred             CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence            3689999999999999976543444889999999999996 567899998877777777776654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.96  E-value=6.5e-10  Score=64.99  Aligned_cols=60  Identities=17%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             EEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +|+|++.|+.|++|++.. +..+..+.+|..+|..+.|+.++..+.|++-+..+-+||.+.
T Consensus       229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            689999999999999976 666788899999999999999999999998787777777764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=98.95  E-value=2.6e-09  Score=59.22  Aligned_cols=64  Identities=25%  Similarity=0.406  Sum_probs=53.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      +++++|.+||.|.+||+.++..+. +...|...|+.++++|+..++++++.+-..-++|...|..
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence            478999999999999999986554 4578999999999999999999998776666666666554

>PTZ00420 coronin; Provisional

Probab=98.94  E-value=9.2e-09  Score=62.07  Aligned_cols=55  Identities=15%  Similarity=0.231  Sum_probs=43.8

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++.|+.|++||+.++.....+. |...|.+++|+|++.++++++.  .+++|.++
T Consensus       141 LaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R  197 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR  197 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence            5789999999999999887665554 5577999999999999887744  46666544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.93  E-value=7.5e-09  Score=60.19  Aligned_cols=60  Identities=25%  Similarity=0.446  Sum_probs=50.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~   61 (69)
                      .|+||+.|.+|.+||+.++++...+..|.+.|.++.|+|.. ..+++|+.+.++-+.|.+.
T Consensus       258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  258 VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            48999999999999999999888888899999999999864 5677887666666666554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.92  E-value=4.1e-09  Score=64.57  Aligned_cols=60  Identities=17%  Similarity=0.315  Sum_probs=49.4

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~   61 (69)
                      .|+++.+.|.+..||++... ....+..|.++|.|+.|+|++..+|+|+.|  +++|.+...+
T Consensus       191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            58899999999999997643 356778999999999999999999999665  6777665433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.92  E-value=1.5e-08  Score=60.14  Aligned_cols=60  Identities=18%  Similarity=0.434  Sum_probs=51.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe---CCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~~   61 (69)
                      ++++.+.||++.+||=.+++.+..+.   +|.+.|..++|+|+...++++  |..++||....++
T Consensus       204 ~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s  268 (603)
T KOG0318|consen  204 RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS  268 (603)
T ss_pred             eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence            68999999999999999999888886   899999999999999888876  5567777655543

>PTZ00420 coronin; Provisional

Probab=98.91  E-value=1.3e-08  Score=61.49  Aligned_cols=57  Identities=18%  Similarity=0.415  Sum_probs=43.5

Q ss_pred             EEEEEeCCCcEEEEECCCCc--------eEEEEeCCCCCCeEEEEcCCCcE-EEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK--------EVASWMSFDTEPPVIKWTPGSLM-FVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~--------~~~~~~~~~~~v~~v~~~~~~~~-~~s~--~~~~~~~~~~   58 (69)
                      .+++|+.|+.|++||+.++.        ++..+.+|...|.+++|+|.+.. ++++  |..+++|...
T Consensus        89 lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~  156 (568)
T PTZ00420         89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE  156 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence            68999999999999997542        23456889999999999998754 4565  4457776543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.89  E-value=4.8e-09  Score=60.57  Aligned_cols=58  Identities=14%  Similarity=0.260  Sum_probs=47.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .|+|++.|..|.+|++.++..+..+. |...|.++.|+.+|..+++++.+..+.+||.+
T Consensus       146 VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr  203 (472)
T KOG0303|consen  146 VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR  203 (472)
T ss_pred             hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence            36788899999999999999887777 99999999999999999998766444444443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=5.6e-09  Score=65.18  Aligned_cols=60  Identities=12%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~~~   61 (69)
                      +++||++|-.|++|+..+.+.+.++.+|..-|+.+.|++....++|++  +.|+||.|..++
T Consensus        65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence            589999999999999999988889999999999999999999888874  459999997664

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.89  E-value=1.8e-09  Score=65.57  Aligned_cols=60  Identities=13%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      .|++++.|.+|.+||+.+.+....+.+|.+.|..++|+|++..+++.+.+.++.+++...
T Consensus       692 vLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  692 VLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             HhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence            367889999999999999988888999999999999999999999987776666655544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.9e-09  Score=65.07  Aligned_cols=55  Identities=18%  Similarity=0.474  Sum_probs=49.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      +++||++|..+++||..+...+.++.+|..-|..+.|.|...+++||+++  ++||.
T Consensus       199 ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  199 YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             eEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence            79999999999999999887788899999999999999999999999665  66664

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=98.88  E-value=1.3e-08  Score=58.39  Aligned_cols=55  Identities=18%  Similarity=0.462  Sum_probs=47.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      .+++|+.|..+++||+++...+..+.+|+.+|..|.+.|-...+++++.+  +++|.
T Consensus       249 vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD  305 (460)
T KOG0285|consen  249 VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD  305 (460)
T ss_pred             eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence            57999999999999999999899999999999999999877777887555  55554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=98.87  E-value=1.3e-08  Score=58.13  Aligned_cols=56  Identities=16%  Similarity=0.320  Sum_probs=48.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      ++++++.+|.|+.||.++|+.+..+.+|...|.++.++|+...+++++.+-...+|
T Consensus       340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  340 YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF  395 (399)
T ss_pred             hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence            67889999999999999999999999999999999999999999998665443333

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.87  E-value=5.1e-09  Score=60.02  Aligned_cols=58  Identities=21%  Similarity=0.409  Sum_probs=46.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++++++.|.+|++|+..++..+..+.+|...|-|+++.  +.++++|+.+..|.+||++
T Consensus       331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecc
Confidence            478999999999999999998888899999988888876  4578888666555555544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.86  E-value=1.1e-08  Score=62.57  Aligned_cols=55  Identities=22%  Similarity=0.453  Sum_probs=44.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcCCc--EEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~--~~~~~   56 (69)
                      ++|+|.+.|.+|++|++.....++. -.|..-|+||+|+| +..+|+||+-|  +++|.
T Consensus       381 ~fLLSSSMDKTVRLWh~~~~~CL~~-F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs  438 (712)
T KOG0283|consen  381 NFLLSSSMDKTVRLWHPGRKECLKV-FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS  438 (712)
T ss_pred             CeeEeccccccEEeecCCCcceeeE-EecCCeeEEEEecccCCCcEeecccccceEEee
Confidence            4799999999999999986664444 46888899999999 56789999555  66663

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=3.2e-08  Score=60.00  Aligned_cols=60  Identities=17%  Similarity=0.326  Sum_probs=53.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~   60 (69)
                      +++++|++|..|++|+..+...++.+..|..-|+++..+|....+.|++.+  +..|.|+.+
T Consensus        68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~  129 (794)
T KOG0276|consen   68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE  129 (794)
T ss_pred             ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence            468999999999999999999999999999999999999998888887655  777877754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.83  E-value=5.1e-09  Score=62.32  Aligned_cols=61  Identities=16%  Similarity=0.345  Sum_probs=51.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~   61 (69)
                      ++|++.++||.++|+|.++.+.+.....+-+...|+.|+||+..+++|++|  +.+|.+...+
T Consensus       303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR  365 (636)
T KOG2394|consen  303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR  365 (636)
T ss_pred             ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence            479999999999999999887766677778889999999999999999665  7888765443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.81  E-value=1.9e-08  Score=61.43  Aligned_cols=57  Identities=12%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      +.++++|.|++|+||.+.+...++++.+|+..|..++|-.++..++|++.+  +.+|..
T Consensus       518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence            368999999999999999998899999999999999999999999998655  555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.80  E-value=3.4e-09  Score=60.70  Aligned_cols=57  Identities=18%  Similarity=0.324  Sum_probs=46.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~   60 (69)
                      .++||..|.+|++||..+...+..+.+|++.|.|++|...  .+++|+.  .+++|.|+..
T Consensus       209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccCC
Confidence            3689999999999999887777888999999999999865  7777754  4777776654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.80  E-value=3.1e-09  Score=60.54  Aligned_cols=57  Identities=28%  Similarity=0.547  Sum_probs=47.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceE--------EEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEV--------ASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~--------~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      +|+++|+-||.|.+|+..+|+.-        .+++.++..|.|+.|+.+..++++|+.  .+.+|..
T Consensus       226 qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  226 QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            58999999999999999988632        245678899999999999999999954  5777753

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.79  E-value=3.3e-08  Score=58.80  Aligned_cols=56  Identities=18%  Similarity=0.440  Sum_probs=46.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      .+|++|...+++.+||..++.... .+.-|+++|.|++|+|+..++++|+-+  +.+|.
T Consensus       500 ~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  500 AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            378999999999999998877533 355699999999999999999999555  55554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.78  E-value=3.4e-08  Score=59.38  Aligned_cols=56  Identities=23%  Similarity=0.399  Sum_probs=45.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      ++++|+.|+.|.+||+.+++.+..+.+|.++|.++.+... ..+.+|  |..+++|..+
T Consensus       343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence            6899999999999999999999999999999999988774 556666  4446665443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.77  E-value=1.3e-08  Score=40.93  Aligned_cols=35  Identities=26%  Similarity=0.616  Sum_probs=29.0

Q ss_pred             ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEE
Q 035275           21 KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW   55 (69)
Q Consensus        21 ~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~   55 (69)
                      +.+..+.+|.+.|.+++|+|++..+++++.+  +++|
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vw   38 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVW   38 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEE
Confidence            3567789999999999999999999988655  5555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.76  E-value=1.7e-08  Score=57.86  Aligned_cols=64  Identities=23%  Similarity=0.338  Sum_probs=50.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCCCcCccc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLSKLGAYV   66 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~   66 (69)
                      .++||+.||.|++||+...+....+..|.+.|.++.+.. +.++..| |..+..|..+...+.++.
T Consensus        81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~til  145 (433)
T KOG0268|consen   81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTIL  145 (433)
T ss_pred             hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeee
Confidence            478999999999999998888889999999999998876 4455555 556888887765555443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.76  E-value=5.1e-08  Score=55.09  Aligned_cols=57  Identities=18%  Similarity=0.270  Sum_probs=46.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      .|++|++||.|.+|+...=..+..+.+|.++|+.++++|.+.+..+.+++-.+..||
T Consensus        99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN  155 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN  155 (362)
T ss_pred             heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence            589999999999999987777888999999999999999988766654444444444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.75  E-value=2.2e-08  Score=61.55  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=57.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCcc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAY   65 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~~   65 (69)
                      +.+++|+.|..|++|.++=|...+++.+|...|.+++|.|+..++.+++.+..+-.||..++..+
T Consensus       563 klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i  627 (888)
T KOG0306|consen  563 KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI  627 (888)
T ss_pred             CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence            36899999999999999988888899999999999999999888888888888888887776654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=98.75  E-value=6e-08  Score=55.56  Aligned_cols=58  Identities=14%  Similarity=0.361  Sum_probs=50.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++|+.|..-.+|+..++..+..+.+|...|.++.|+.++.++++|+-  .+.+|.-.
T Consensus        77 ~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   77 NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            36789999999999999999988999999999999999999999999954  56666543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.75  E-value=6.6e-08  Score=55.43  Aligned_cols=55  Identities=15%  Similarity=0.369  Sum_probs=48.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~   55 (69)
                      +|++|+.+|+++++||+.+++.+..+..|.+-+.+++|.....++++|+-  ...+|
T Consensus       347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence            58999999999999999999999999999999999999988889999854  45555

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.75  E-value=3.6e-08  Score=60.68  Aligned_cols=54  Identities=19%  Similarity=0.535  Sum_probs=46.9

Q ss_pred             EEEEeCCC-cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEc
Q 035275            3 VISGSGDG-SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWI   56 (69)
Q Consensus         3 ~~s~~~d~-~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~   56 (69)
                      +..|+.|. .|.+|++.+|+.+-.+.+|.++|.++.|+|.+..++|+  |..+++|.
T Consensus       450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            55666676 79999999999999999999999999999999999998  55677774

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.74  E-value=1.7e-07  Score=50.10  Aligned_cols=56  Identities=25%  Similarity=0.536  Sum_probs=44.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      ++++++.|+.+.+|+..++.....+..|...+.++.|+|++..+++++.+..+.+|
T Consensus       233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence            46666669999999998887777788898899999999998888887555444433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.74  E-value=4.7e-08  Score=60.17  Aligned_cols=55  Identities=20%  Similarity=0.384  Sum_probs=48.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~   56 (69)
                      +++.|.+||.|++|+..++.....+.+|...|+++.|...|..++||+  +++.+|.
T Consensus        79 ~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwD  135 (888)
T KOG0306|consen   79 LLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWD  135 (888)
T ss_pred             eEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEE
Confidence            479999999999999998888888999999999999999999999985  4576663

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.74  E-value=1.5e-07  Score=50.25  Aligned_cols=58  Identities=19%  Similarity=0.457  Sum_probs=46.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.||.+.+|+..++.....+..|...+..+.|+|++..+++++.  .+.+|..+
T Consensus        22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200          22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            36788999999999999888777778889888889999999877777644  46666544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=98.74  E-value=6.8e-08  Score=54.26  Aligned_cols=60  Identities=10%  Similarity=0.069  Sum_probs=50.7

Q ss_pred             EEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +|+||+.|..|.+|++.. .+....+.+|.+.|..+.|.+++..+.+++.+.++..||.+.
T Consensus        61 ~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   61 CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            689999999999999743 455777889999999999999999999987777777777653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.73  E-value=2e-08  Score=55.57  Aligned_cols=56  Identities=18%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~   56 (69)
                      ++|++|+.|-.+.+||++.-..+..+.-++-+|+.++|+-++.++++++++..|=+
T Consensus       202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence            58999999999999999866556778889999999999999999999998755443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.73  E-value=4.6e-08  Score=58.29  Aligned_cols=61  Identities=16%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~   62 (69)
                      ..+++..||.|.|||+.+...+.++.+|...+.|+.+++++.-+=+|+-+-++..||.+..
T Consensus       523 vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg  583 (705)
T KOG0639|consen  523 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG  583 (705)
T ss_pred             eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence            4577888999999999988888999999999999999999999989865555555555443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.73  E-value=1.2e-07  Score=54.68  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=45.1

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      .|+||+.|+++++||+++.. ++..+.+|..+|.++.|+. +..+++|+.+-.+..+
T Consensus       360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIF  415 (423)
T ss_pred             EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEe
Confidence            58999999999999999876 7889999999999999995 4567787655444443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.72  E-value=1.4e-07  Score=52.11  Aligned_cols=60  Identities=20%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             CEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++|++++.|.+++||+.++- +....+.+|.+=+-.+.||.++..+++++.+....+|++.
T Consensus       228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            58999999999999999876 4456778898777788899999999999766444445444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=7.1e-08  Score=57.29  Aligned_cols=58  Identities=22%  Similarity=0.474  Sum_probs=48.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcC----CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGS----SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~----~~~~~~~~~   58 (69)
                      ++++||+.|+.+.|||.....+...+..|.+.|..++|+| +..++|+|.    ..++||...
T Consensus       314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~  376 (484)
T KOG0305|consen  314 NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN  376 (484)
T ss_pred             CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence            4689999999999999977777888999999999999999 567888873    346676544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=98.68  E-value=9.9e-08  Score=53.63  Aligned_cols=57  Identities=18%  Similarity=0.339  Sum_probs=50.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      ++-.|+.|..+++||......+..+++|.+.|++++|.|...++.+++.+.++++-+
T Consensus       280 ~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  280 KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            355788899999999988788889999999999999999999999998888887643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=6.4e-09  Score=63.50  Aligned_cols=60  Identities=22%  Similarity=0.418  Sum_probs=48.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +++.|+.+|.|++||+..++.+..+.+|...+..++|+|-+.++++++.+-.+-+||+.+
T Consensus        84 LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk  143 (825)
T KOG0267|consen   84 LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK  143 (825)
T ss_pred             hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence            467889999999999999988889999999999999999999998775443333344443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=6.3e-08  Score=54.75  Aligned_cols=56  Identities=21%  Similarity=0.438  Sum_probs=46.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc--EEEEc--CCcEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTG--SSELSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~s~--~~~~~~~~   56 (69)
                      .+++||+.|-+|.+||+.....+..+..|.+.|+++.|.+...  .++++  |+.+.+|.
T Consensus        54 ~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   54 PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            3789999999999999999888888999999999999987653  56666  44577764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.66  E-value=1e-07  Score=55.33  Aligned_cols=55  Identities=29%  Similarity=0.610  Sum_probs=44.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEcCCc--EEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFD--TEPPVIKWTPGSLMFVTGSSE--LSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~s~~~~--~~~~   55 (69)
                      .|++.|+.||.|++|++.+++....+....  ..|.++.|+|.|..++++|.+  ..+|
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            378999999999999999998777765433  359999999999888888776  4444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.66  E-value=6.4e-08  Score=59.56  Aligned_cols=61  Identities=30%  Similarity=0.427  Sum_probs=51.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~~~   62 (69)
                      .|+||++||.|+.||++.........+....|+.|+|+|. +..|+++.+...+.+||++.-
T Consensus       148 iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp  209 (839)
T KOG0269|consen  148 ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP  209 (839)
T ss_pred             EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence            6899999999999999988777667778888999999985 567888877877777877643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.66  E-value=2.5e-07  Score=57.59  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             EEEEEeCCCcEEEEECCCC------ceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSG------KEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~------~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      ++++++.|+.|++||+..+      ..+..+.+|...+.+++|+|++..+++++.  .+.+|..
T Consensus       674 ~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            6889999999999999743      346678899999999999999999998854  4666653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.65  E-value=3.3e-07  Score=52.88  Aligned_cols=60  Identities=22%  Similarity=0.558  Sum_probs=47.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc-CC--CcEEEEc--CCcEEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PG--SLMFVTG--SSELSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~-~~--~~~~~s~--~~~~~~~~~~~~~   61 (69)
                      +++++|+.||.+++||. .|+...++.+|.+++..+.+. ++  ...++++  |+.++.|.|+...
T Consensus       116 ~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  116 KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            47899999999999997 577788999999999977663 33  2356666  5569999988764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.63  E-value=2.9e-07  Score=51.15  Aligned_cols=58  Identities=28%  Similarity=0.254  Sum_probs=50.1

Q ss_pred             EeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            6 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         6 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      ...-|.|.|.....-+++..+..|...+.|+.|+|++..+++|+.+..+.+||++.|-
T Consensus       165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi  222 (313)
T KOG1407|consen  165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI  222 (313)
T ss_pred             ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence            3445788888888778888999999999999999999999999999999999887653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.61  E-value=2.9e-07  Score=54.22  Aligned_cols=61  Identities=23%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~   62 (69)
                      .+++|++|+.+++||+.+......+.+|+.-|+|.+++|.. .+++||+.|..+.+||.+..
T Consensus       125 ~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  125 MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            57899999999999998887655679999999999999964 57889977766666666544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.1e-07  Score=51.63  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=43.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~   62 (69)
                      .++|++.|++|++||++..+....+..-  .-..++|.|+|.++|.+...-.|-++|.+.+
T Consensus       114 ~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  114 TFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             eEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            5899999999999999977655555322  2346789999999999855546666665544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=7.3e-07  Score=49.25  Aligned_cols=59  Identities=17%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEc-C-CCcEEEEc--CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWT-P-GSLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~-~-~~~~~~s~--~~~~~~~~~~~   59 (69)
                      +.|++++.|+.|+|+..+.+.   .+..+.+|.+++-.+.|. | .+.+++|+  |+.+.||....
T Consensus        24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~   89 (299)
T KOG1332|consen   24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN   89 (299)
T ss_pred             ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence            358999999999999997654   466789999999999996 4 57889988  55678886543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.60  E-value=4.2e-07  Score=51.42  Aligned_cols=61  Identities=20%  Similarity=0.347  Sum_probs=48.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~~~~~~~   62 (69)
                      ++++|..|-.|.++|+.+|.....+.+|+..|..|.|+|... .+++++.+..+.+||+++.
T Consensus       160 LiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  160 LIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA  221 (397)
T ss_pred             EEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence            467777777999999999987888999999999999999765 5667766655556666654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.59  E-value=6e-07  Score=52.94  Aligned_cols=56  Identities=20%  Similarity=0.330  Sum_probs=45.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~   57 (69)
                      .++||+.||+|++||.++......--.|..+|..+.+-|.+..++++ +.++.+|..
T Consensus       168 ivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl  224 (487)
T KOG0310|consen  168 IVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDL  224 (487)
T ss_pred             EEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEe
Confidence            48999999999999998775322334688899999999999899987 456999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.59  E-value=1.6e-07  Score=55.30  Aligned_cols=55  Identities=24%  Similarity=0.408  Sum_probs=46.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEc--CCcEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTG--SSELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~--~~~~~~~   55 (69)
                      ++|++|+.||.+.+||..+-+.+..+..|+.+|..+.|.|... .++++  ++.+.+|
T Consensus       445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence            4799999999999999999988889999999999999999753 45665  4556665

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.59  E-value=1.5e-07  Score=53.07  Aligned_cols=58  Identities=21%  Similarity=0.373  Sum_probs=43.9

Q ss_pred             EEEEEeCCCcEEEEECCCC-ce-EEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSG-KE-VASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~-~~-~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~   59 (69)
                      +++.+|+|++|++|++... .. .+....|.+++.++.|+.++..+.++  |....+|....
T Consensus        42 ~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   42 LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            4678999999999999763 32 24456899999999999998776666  55577765433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=2.8e-07  Score=55.59  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCC--CcEEEEcCCcEEEEcCCCCCcCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPG--SLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~--~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      +|+||++|..+.|||.-..+.+..+ .+|.+-|.+++|-|.  ..+++++..+..|.++|+..+++
T Consensus        64 lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~  129 (758)
T KOG1310|consen   64 LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE  129 (758)
T ss_pred             EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence            6899999999999999877766666 699999999999984  46788887787888888776443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=5.4e-07  Score=49.54  Aligned_cols=60  Identities=20%  Similarity=0.476  Sum_probs=51.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++++|..|..+.+||++-++.+..+..|...|+|+.|+|.-..+.+++.+..|-+.|.+
T Consensus       244 rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            468999999999999999888888899999999999999998888888776666655543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.57  E-value=3.7e-07  Score=55.60  Aligned_cols=59  Identities=17%  Similarity=0.292  Sum_probs=51.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .+++|+..+.+.+||.+++.....+.+|+.-|+++..++++..++|++.+..|.+||+.
T Consensus       185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            37889999999999999998888889999999999999999999999777666667665

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.57  E-value=8.3e-07  Score=50.12  Aligned_cols=55  Identities=33%  Similarity=0.610  Sum_probs=44.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC--cEEEEc--CCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS--LMFVTG--SSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~s~--~~~~~~~~~   57 (69)
                      .+++|+.|+.+++||+.++. ..+...|.++|.++.|.+..  ..+++|  |..+++|..
T Consensus        86 kVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~  144 (347)
T KOG0647|consen   86 KVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT  144 (347)
T ss_pred             eEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence            47899999999999999884 77888999999999998654  478888  455666643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.55  E-value=6e-07  Score=51.62  Aligned_cols=57  Identities=16%  Similarity=0.329  Sum_probs=46.6

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc---EEEE-cCCCCCcCcc
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFW-IPDLSKLGAY   65 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~---~~~~-~~~~~~~~~~   65 (69)
                      .|.|.+||..+-++...+..|.+.+-+++|+++|.++|++++.   |+++ ..+.+++.+|
T Consensus       152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence            4789999999988888999999999999999999999999765   4544 3445555554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.55  E-value=3.9e-07  Score=54.97  Aligned_cols=54  Identities=22%  Similarity=0.473  Sum_probs=35.5

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      +.+|+.|.+|++|++.++..+..+.+|.++|++++++  +.+++++  |..+.+|.+.
T Consensus       304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             EeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            4566777778888877777666666788888888777  3445554  3345555443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=98.54  E-value=6.5e-07  Score=52.87  Aligned_cols=57  Identities=19%  Similarity=0.331  Sum_probs=48.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      .|++++.|+.|.++-+....+...+.+|.+.|.++.|+|.+.+++|++.+.++-+|+
T Consensus       331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS  387 (524)
T ss_pred             eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence            478889999999999988888889989999999999999999999986664444444

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.54  E-value=3.8e-07  Score=57.44  Aligned_cols=56  Identities=21%  Similarity=0.364  Sum_probs=49.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~   56 (69)
                      .++++++-|++|.+|+..+...+..+.+|.+.|..+.|.|-+.++++-+.  .+.+|.
T Consensus       142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr  199 (942)
T KOG0973|consen  142 SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR  199 (942)
T ss_pred             cEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEE
Confidence            37899999999999999999888899999999999999999999998644  477775

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=1.4e-07  Score=55.36  Aligned_cols=55  Identities=22%  Similarity=0.543  Sum_probs=46.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      +++.|...|.+++|.+.+|..+..+..|--.|.|+.|+-++.+++|++.|  +.+|+
T Consensus        95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~  151 (476)
T KOG0646|consen   95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWL  151 (476)
T ss_pred             EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence            45555588999999999999888889999999999999999999999665  66664

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.51  E-value=1.8e-07  Score=53.35  Aligned_cols=54  Identities=22%  Similarity=0.419  Sum_probs=47.6

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEc
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWI   56 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~   56 (69)
                      +.+++.|.+-.+|.+.++..+..+.+|.+.|++++|++.+.+++++  |+...||.
T Consensus       163 ~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  163 CGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             eeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            5678899999999999999899999999999999999999888876  55578885

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.51  E-value=4.2e-07  Score=50.06  Aligned_cols=61  Identities=11%  Similarity=0.216  Sum_probs=51.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +|.++++.|.+|++|+...+..++...+|...|..++.+.+...+++++.+..+..||.+.
T Consensus        30 nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   30 NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            4778899999999999999998999999999999998888888899987776666666553

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.50  E-value=3.2e-07  Score=52.40  Aligned_cols=59  Identities=24%  Similarity=0.342  Sum_probs=50.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .++++++|.+-.+||+.++..+..+.+|+....-++-.|...++++++.+-.|.+||.+
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR  344 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR  344 (481)
T ss_pred             eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch
Confidence            47899999999999999999888899999988888888888888888777666666654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=7.4e-07  Score=55.82  Aligned_cols=57  Identities=12%  Similarity=0.271  Sum_probs=49.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      +++.|++|-.|++-+..+......+.+|+++|.++.|+|++.++|+.  ++.+.+|..+
T Consensus       110 ~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen  110 MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            67889999999999998888889999999999999999999999976  5557776654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.48  E-value=8.4e-07  Score=51.97  Aligned_cols=60  Identities=15%  Similarity=0.256  Sum_probs=46.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +|++|++.|.+..+|.+....   ...++.+|..+|..+.|+|+...+++++.+-.+|+||..
T Consensus       237 kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~  299 (519)
T KOG0293|consen  237 KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD  299 (519)
T ss_pred             eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence            589999999999999985543   356778999999999999998877776444335555543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=1.5e-06  Score=48.54  Aligned_cols=55  Identities=20%  Similarity=0.383  Sum_probs=43.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEE---EE-eCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVA---SW-MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~---~~-~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~   56 (69)
                      .|++|+.|..|++|+...+....   .+ .+|...|+.++|+|.+..+++++-  ...||.
T Consensus        29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~   89 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK   89 (312)
T ss_pred             EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence            58999999999999997543322   22 479999999999999999998854  466664

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=1.7e-07  Score=59.35  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=50.3

Q ss_pred             EEEEEeCCCcEEEEECCC---Cc---eEEEEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCCCcCc
Q 035275            2 FVISGSGDGSVYAWSVRS---GK---EVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~---~~---~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      .++.|.+||.|.+||...   +.   .+.+...|.+.|..+.|++. ++.+++|+++..||+||++++++
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t  151 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET  151 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC
Confidence            478899999999999865   22   24556789999999999986 45999998887777788877655

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.45  E-value=3.8e-07  Score=51.33  Aligned_cols=49  Identities=16%  Similarity=0.332  Sum_probs=43.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS   49 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~   49 (69)
                      ++|++|+.||.|.+||..+.+.++++......|-.++|+.++.++|.++
T Consensus       245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            4699999999999999999988999988878889999999999988763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.43  E-value=8.6e-07  Score=52.11  Aligned_cols=58  Identities=16%  Similarity=0.361  Sum_probs=47.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC--CcEEEEcCCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG--SLMFVTGSSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~s~~~~~~~~~~~   58 (69)
                      +||++|..|..|.||+.++.+....+.+|.+.|.+++|-..  ..+.++.|..+.+|..+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID  274 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh
Confidence            58999999999999999999988889999999999988644  34444557778888654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.42  E-value=2.5e-06  Score=48.42  Aligned_cols=56  Identities=16%  Similarity=0.226  Sum_probs=43.5

Q ss_pred             EEEEEeCCCc-EEEEECCCCceEEEEe--CCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275            2 FVISGSGDGS-VYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~-v~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      .++++|..|+ |+|||..+|..+..+.  .....|.|++|+|+..+++.+++..++..+
T Consensus       195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence            4799999995 7899999999887773  344678999999999998887655444333

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=98.41  E-value=2.3e-06  Score=47.86  Aligned_cols=57  Identities=16%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      .+|+|++.|....+|-..+|+.+..+.+|++.|-|++..-+...+++++.  .+.+|..
T Consensus        23 DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen   23 DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV   81 (327)
T ss_pred             cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence            36899999999999999999999999999999999999887777887744  4666643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.40  E-value=5.7e-06  Score=46.10  Aligned_cols=57  Identities=23%  Similarity=0.473  Sum_probs=43.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~   58 (69)
                      ++++|.++|++|++||.+++..+.++. .+.+|.++-+++++.++..+ ...+.+|..+
T Consensus       156 ~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdak  213 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAK  213 (334)
T ss_pred             ceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccc
Confidence            467888999999999999998766653 23457788889998887776 4568888643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.40  E-value=1.4e-06  Score=49.19  Aligned_cols=52  Identities=19%  Similarity=0.370  Sum_probs=41.3

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEE
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSL-MFVTGSSELS   53 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~   53 (69)
                      .+++|++||.|++||.+..+ ++..+.+|..=+-+|+|+|... ++.+++.+..
T Consensus       229 ~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  229 ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence            58999999999999997654 5778899999999999999754 4556655533

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.39  E-value=1.1e-06  Score=54.15  Aligned_cols=56  Identities=29%  Similarity=0.481  Sum_probs=43.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~   57 (69)
                      +||+||+-||+|++|++...+ +..+..-...|+.+.|.|+|...+.|  .+..+++..
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t  480 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT  480 (712)
T ss_pred             CcEeecccccceEEeecCcCe-eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence            589999999999999997665 56666555889999999999877766  444555543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2.7e-06  Score=50.80  Aligned_cols=55  Identities=25%  Similarity=0.407  Sum_probs=45.4

Q ss_pred             EeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEc-CCCC
Q 035275            6 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWI-PDLS   60 (69)
Q Consensus         6 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~-~~~~   60 (69)
                      |..+..|.+|+..+-+.+..+.+|..+|..++++|++..++++  |+++++|. |+..
T Consensus       407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence            3445589999998888888899999999999999999888876  67799994 5543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=6e-07  Score=52.01  Aligned_cols=57  Identities=14%  Similarity=0.319  Sum_probs=46.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~   58 (69)
                      .+++|+.||.+++|+..+-..+.....|.+.|..+.|+|++.++++-+. ...+|..+
T Consensus       158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~  215 (398)
T KOG0771|consen  158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVN  215 (398)
T ss_pred             EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEec
Confidence            4789999999999998766656666788899999999999998887543 57777644

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=98.37  E-value=7.5e-07  Score=53.31  Aligned_cols=55  Identities=16%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             EEEEEeCCCcEEEEECCCC---ceEEEEeCCCC--CCeEEEEcCCCcEEEEcC--CcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSG---KEVASWMSFDT--EPPVIKWTPGSLMFVTGS--SELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~---~~~~~~~~~~~--~v~~v~~~~~~~~~~s~~--~~~~~~~   56 (69)
                      .++.|+.||.|.+|+....   .....-..|..  .|.|+.|+++++.++|-+  ....+|.
T Consensus       331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            5788999999999997442   22344467877  899999999999998864  4466664

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=2.4e-07  Score=56.94  Aligned_cols=63  Identities=24%  Similarity=0.438  Sum_probs=52.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      +++++|++|..+++||...|+....+.+|.+++..+.|.|....+++|+.+..+-.||++++.
T Consensus       167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence            368899999999999999999888999999999999999998888888666555555565443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.35  E-value=3.3e-06  Score=47.74  Aligned_cols=64  Identities=22%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCce---EEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCcCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKE---VASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~---~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      +++.+.+-|.++.|||+.++..   .+++-.|++.|..++|...+ .+|+|.+.+..+..||++.+++
T Consensus       164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            3678889999999999988633   57789999999999999754 5788876665556677776654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.35  E-value=1.7e-06  Score=50.33  Aligned_cols=57  Identities=18%  Similarity=0.457  Sum_probs=45.7

Q ss_pred             EEEEEeCCCcEEEEECCCCc---------eEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK---------EVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~---------~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .+++|+.|..|++|-+..+.         .+..+..|...|+++.|+|++..++|++.  .+.+|...
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~   95 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG   95 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence            57899999999999986532         13356789999999999999999999844  57788644

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.33  E-value=1.1e-06  Score=50.71  Aligned_cols=64  Identities=17%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCccc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV   66 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~   66 (69)
                      .|++|..|+.|.+||++++.++.... -+-+.+.++|+|....|++++++-+++.+|++.|.+..
T Consensus       202 ILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  202 ILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             heeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccc
Confidence            36788899999999999987765432 12234688999988889999999999999999887643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.33  E-value=6.6e-06  Score=51.51  Aligned_cols=54  Identities=19%  Similarity=0.487  Sum_probs=43.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--C-CcEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--S-SELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~-~~~~~~   55 (69)
                      +++++++.|++|++||+.++..+..+. -+.++..++|+|.+.+++++  | ..+.+|
T Consensus       589 rWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  589 RWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             cEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence            579999999999999999998665553 34567899999999999997  3 236666

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.31  E-value=1.1e-05  Score=44.29  Aligned_cols=55  Identities=11%  Similarity=0.078  Sum_probs=40.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEE-EEcCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~s~~~--~~~~~~~   57 (69)
                      .+++++.|+.|.+||..+++....+..+.. +.++.|+|++..+ ++++.  .+.+|..
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~   60 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDL   60 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEEC
Confidence            578899999999999988887666665544 5679999998754 55543  4555543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.31  E-value=1.2e-06  Score=54.35  Aligned_cols=55  Identities=15%  Similarity=0.250  Sum_probs=47.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      |+++.+.|.++.++|..+++.+.+..+|...|+.+.|.++...+++.+++  |.+|.
T Consensus       655 Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  655 YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            78888999999999999999888889999999999999998777776555  55664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.31  E-value=8.4e-06  Score=46.11  Aligned_cols=56  Identities=20%  Similarity=0.421  Sum_probs=45.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      .+++|+-||.|+.+|+.+++ ...+..|.+++.|+.+++....+++|  |..+.+|.+.
T Consensus        67 ~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   67 TIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             eEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence            46788888888888887776 56778899999999999877777777  6678888765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.31  E-value=2.4e-06  Score=51.28  Aligned_cols=54  Identities=13%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             EEEEEeCCCcEEEEECCCC--------ceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEE
Q 035275            2 FVISGSGDGSVYAWSVRSG--------KEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFW   55 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~--------~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~   55 (69)
                      .+++++.||.+++|++...        +++..+.+|.++|.|+.+.+.+..+.++  |+.|+.|
T Consensus       308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            4789999999999999321        3567889999999999999999888888  5557777

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.30  E-value=4.9e-06  Score=50.96  Aligned_cols=60  Identities=17%  Similarity=0.345  Sum_probs=52.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      .++|++.||+|++||+...+.+.++..|...+=.++.+|.-..+.+|+.+.+++..|+..
T Consensus       227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            578999999999999988877888889998888888899988999999998888777654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.29  E-value=3e-06  Score=52.21  Aligned_cols=57  Identities=19%  Similarity=0.318  Sum_probs=48.0

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++++ ..|.+++||+.+++.+..+.+|...|.++.|+.++.++++++.+..+.++|.+
T Consensus       144 l~s~-a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  144 LASG-AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             EEec-cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence            4444 45889999999999999999999999999999999999998777666656654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.27  E-value=4.5e-06  Score=50.59  Aligned_cols=57  Identities=25%  Similarity=0.479  Sum_probs=50.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      ++++|++||...+|+-.++..+..+.+-...+.|++-.|...+++++  |..+.||.+.
T Consensus       638 yiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~  696 (758)
T KOG1310|consen  638 YIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPE  696 (758)
T ss_pred             eeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEeccc
Confidence            78999999999999999999888998888999999999998888876  6668898754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.27  E-value=2.5e-06  Score=50.31  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=42.5

Q ss_pred             EEEEEeCCCcEEEEECCCC--c--eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSG--K--EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~--~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      ++++++-|++++|||++.-  +  +......|+..|.++-|+|.+..+++.+.+  |++|.
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            6899999999999999753  2  234557899999999999987767776554  66653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.26  E-value=1.6e-06  Score=50.57  Aligned_cols=58  Identities=19%  Similarity=0.474  Sum_probs=44.0

Q ss_pred             EEEEEeCCCcEEEEECCCCc-------eEEEEeCCCCCCeEEEEcCC-CcEEEEc--CCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-------EVASWMSFDTEPPVIKWTPG-SLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-------~~~~~~~~~~~v~~v~~~~~-~~~~~s~--~~~~~~~~~~~   59 (69)
                      -++||++|.+|.+|.+..+.       +...+.+|..+|.-|+|+|- .++++|+  |..+.+|....
T Consensus        96 vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t  163 (472)
T KOG0303|consen   96 VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT  163 (472)
T ss_pred             eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence            47999999999999996542       46678999999999999985 3445554  44577776543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.26  E-value=2.9e-06  Score=48.53  Aligned_cols=57  Identities=26%  Similarity=0.420  Sum_probs=47.0

Q ss_pred             CEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      ++|++|+.||.|.+||++. +..+..+..|..-++.|+++|--.++++++++..+-.+
T Consensus       310 ~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~  367 (406)
T KOG2919|consen  310 EILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYP  367 (406)
T ss_pred             ceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeecCC
Confidence            4689999999999999987 56566777888899999999998888888777655443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.26  E-value=7.2e-06  Score=46.43  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=26.4

Q ss_pred             EEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 035275           23 VASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus        23 ~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~   61 (69)
                      +..+..|.+.|+.++|.|.. ..+++++.+...-.||++.
T Consensus       280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             eehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            34556799999999999864 5677775554444444443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.26  E-value=1.1e-06  Score=52.02  Aligned_cols=54  Identities=19%  Similarity=0.333  Sum_probs=45.2

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      +-.|...|+|.+|......++..+..|.++|.++++.++|..+++++-+  +.||.
T Consensus       266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD  321 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD  321 (545)
T ss_pred             EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence            3467788999999998888888888999999999999999998887554  55653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.25  E-value=1.3e-06  Score=53.18  Aligned_cols=57  Identities=21%  Similarity=0.482  Sum_probs=45.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEE--EeCCCCCCeEEEEcCC-CcEEEEcCCc--EEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVAS--WMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~--~~~~~~~v~~v~~~~~-~~~~~s~~~~--~~~~~~~   58 (69)
                      .|++++.|.++++||+..++....  ..+|.+.+..++|.|. ...|++|+.+  +.+|.-.
T Consensus       114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen  114 LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             eEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            478999999999999988876544  6899999999999985 4678888554  6666543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=1.8e-06  Score=47.77  Aligned_cols=58  Identities=21%  Similarity=0.374  Sum_probs=43.1

Q ss_pred             EEEEEeCCCcEEEEECCCCce--EEEEeCCCCCCeEEEEcCCC--cEEEEc--CCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGS--LMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~v~~~~~~--~~~~s~--~~~~~~~~~~~   59 (69)
                      .|+|++.||+|.||....++-  ......|.+.|++++|-|.+  .+++++  |+++.+..++.
T Consensus        72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~  135 (299)
T KOG1332|consen   72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS  135 (299)
T ss_pred             EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence            589999999999999887741  23446799999999999864  566665  55566655543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.24  E-value=7e-07  Score=52.03  Aligned_cols=62  Identities=23%  Similarity=0.252  Sum_probs=52.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      ++++.+.|+.+.+|+++..+...++.+|.+.|.++.|......+++++.+..+-.||+.+..
T Consensus       233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~  294 (459)
T KOG0288|consen  233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY  294 (459)
T ss_pred             eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence            56778889999999999998888899999999999998776668898888888788877643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=98.23  E-value=3.8e-06  Score=50.45  Aligned_cols=55  Identities=16%  Similarity=0.324  Sum_probs=40.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceE-EEE-----eCCCCCCeEEEEcCCCcEEEEc--CCcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEV-ASW-----MSFDTEPPVIKWTPGSLMFVTG--SSELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~-~~~-----~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~   56 (69)
                      .+++++.||++++||+...+.. ..+     .+.+-++..++|+|++..||+|  |+.|.+|.
T Consensus       283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~  345 (641)
T KOG0772|consen  283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD  345 (641)
T ss_pred             ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence            4789999999999999765432 222     2233456788999999999988  45577776

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.23  E-value=3.5e-06  Score=50.49  Aligned_cols=59  Identities=17%  Similarity=0.240  Sum_probs=46.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~   60 (69)
                      +|.+++++|.|.+||+....+...+ ..|.+++..+.|+|.. .++++.+-+..|.++|+.
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            4678899999999999765555554 7899999999999964 567777777777777765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.23  E-value=5.4e-06  Score=51.39  Aligned_cols=52  Identities=12%  Similarity=0.329  Sum_probs=44.1

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS   60 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~   60 (69)
                      +.++.+||...|..+..+.+|..-|.||+|+.+|..++||+.+  +.+|....+
T Consensus        32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            4579999999999899999999999999999999999998655  666654443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.21  E-value=1.1e-06  Score=50.45  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=48.8

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++|++.|.++++..+.+|+.++.+.+|..-|+.+.|.+++..+++++.+..+-+|+..
T Consensus       321 iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K  378 (508)
T KOG0275|consen  321 ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK  378 (508)
T ss_pred             hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence            6789999999999999999999999999999999999999999888665444444443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.18  E-value=3.2e-05  Score=41.30  Aligned_cols=61  Identities=18%  Similarity=0.475  Sum_probs=41.6

Q ss_pred             EEEEEeC---CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--------CcEEEEcCCCCCcCc
Q 035275            2 FVISGSG---DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--------SELSFWIPDLSKLGA   64 (69)
Q Consensus         2 ~~~s~~~---d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--------~~~~~~~~~~~~~~~   64 (69)
                      +++.++.   .|.|.+||..+.+.+... .| ..+..+.|+|++..++++.        ..+.||.++.+.+.+
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~  185 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK  185 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence            5666553   367999999876655443 23 3367899999999988763        237788776665444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.18  E-value=5.2e-06  Score=47.15  Aligned_cols=64  Identities=19%  Similarity=0.317  Sum_probs=47.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCc----------eEEE-----EeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCCCcCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGK----------EVAS-----WMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~----------~~~~-----~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      ++++||+.||.+.+||+....          ..+.     -.+|...|..+.|-| +..++.+++-+..+-+||.+.+++
T Consensus        57 rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~  136 (397)
T KOG4283|consen   57 RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE  136 (397)
T ss_pred             eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccccee
Confidence            578999999999999996532          1111     135777888888888 567888887787777777777655

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.15  E-value=3.6e-05  Score=45.43  Aligned_cols=61  Identities=21%  Similarity=0.318  Sum_probs=47.8

Q ss_pred             EEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCC-cEEEEcCC--cEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGS-LMFVTGSS--ELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~--~~~~~~~~~~~~   62 (69)
                      .++++..||.|+-+|.+.. +++.++..|.+.|.++.+++.. .++++++.  .+.+|.++....
T Consensus       344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            4778889999999999874 7889999999999999998753 45666544  477887665544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.15  E-value=2e-05  Score=45.23  Aligned_cols=59  Identities=15%  Similarity=0.366  Sum_probs=44.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~   60 (69)
                      ++++|++.|.+|.+|++. |+.+..+......-.-.+.+|+|.+++++  .-++.+|-+-..
T Consensus       200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~  260 (420)
T KOG2096|consen  200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT  260 (420)
T ss_pred             eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEec
Confidence            478999999999999997 77666664444444556789999998876  346888864443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.14  E-value=1.6e-06  Score=54.14  Aligned_cols=59  Identities=15%  Similarity=0.166  Sum_probs=47.9

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      ++.+.+|-.|.++|..+.+.+..+.+|..+|+.+.|||++..+++++.|-.|..||+..
T Consensus       549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            45566777899999998888888899999999999999999999997665555555543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.14  E-value=1.8e-05  Score=47.97  Aligned_cols=36  Identities=22%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             EEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275           25 SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus        25 ~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .+..|++.|.+++|++...++++|+++.++-+||..
T Consensus       181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             EEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence            567899999999999999999999999888777754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.14  E-value=1.6e-05  Score=48.98  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=43.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      .|+|++.||.|+.|++ ++..+....+|+.-+.+++..++...++|++  +.++||.-+
T Consensus       192 ~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  192 HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            4789999999999998 6777888889999899999766666666664  457777543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=2.5e-05  Score=44.49  Aligned_cols=56  Identities=23%  Similarity=0.373  Sum_probs=41.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCeEEEEcC-C-CcEEEEcCCc--EEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTP-G-SLMFVTGSSE--LSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~----~~~~~~~~~~~v~~v~~~~-~-~~~~~s~~~~--~~~~~   56 (69)
                      +.+++|+.|++++|||.+...    ....+..|.+.|-.|.|.+ . |..+++++.+  +.||-
T Consensus        26 RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   26 RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            358999999999999975443    2345688999999999964 3 6788887554  66664

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.13  E-value=1.8e-05  Score=50.34  Aligned_cols=62  Identities=26%  Similarity=0.414  Sum_probs=47.4

Q ss_pred             CEEEEEeCCCcEEEEECCC----------C--------ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275            1 MFVISGSGDGSVYAWSVRS----------G--------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~----------~--------~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~   62 (69)
                      ++|++|++|+.|.+|+...          |        +....+.+|+.-|..+.|+|+..++++++-+-.+-+||..++
T Consensus        82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence            4899999999999999872          1        024456889999999999999999999865544444555444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.12  E-value=1.2e-06  Score=52.05  Aligned_cols=58  Identities=17%  Similarity=0.405  Sum_probs=47.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      .|++||++-|.|.||+-.+++.+.-+.+-.+.|+|+.-+|-..++|++  +.++.||.+-
T Consensus       407 EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  407 EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence            378999999999999998887665566666788999888888788876  6789999873

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.10  E-value=2.2e-05  Score=45.01  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=45.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE---eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW---MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      .+++.|.+...+++||+.+-+.....   ..|.+.|.+|.+++.+.+.++++.+..|-+||.
T Consensus       229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG  290 (430)
T KOG0640|consen  229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG  290 (430)
T ss_pred             ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence            36788888889999999887654433   468999999999999999999966655555553

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.08  E-value=2.8e-05  Score=43.29  Aligned_cols=59  Identities=12%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      ++.++.|+.++-||+.+|+....+.+|+.-+.++.--.....+.||.++..+.+||...
T Consensus       129 i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  129 ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence            45556789999999999998888999999999887633333466776654444454443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.07  E-value=1.4e-05  Score=45.72  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=48.5

Q ss_pred             EEEEEeCCCcEEEEECCC------------C------ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRS------------G------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~------------~------~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      ++++|+.|..|++.|+..            +      ..+..+-.|...|+++.|+|...++++++.+-++-++|+.+
T Consensus       126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK  203 (430)
T KOG0640|consen  126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSK  203 (430)
T ss_pred             EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEeccc
Confidence            689999999999999861            1      12455677889999999999999999998887777777654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.06  E-value=2.2e-06  Score=53.88  Aligned_cols=55  Identities=16%  Similarity=0.379  Sum_probs=46.8

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~   60 (69)
                      +++++.|.-|.+|-+.++.++..+.+|++.|+.++|+|..   .++ ++..+||.|+..
T Consensus       247 iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~  302 (1113)
T KOG0644|consen  247 IAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLE  302 (1113)
T ss_pred             hhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccc
Confidence            5788999999999999999888899999999999999975   333 567999988743

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.06  E-value=3.1e-05  Score=43.88  Aligned_cols=62  Identities=24%  Similarity=0.350  Sum_probs=44.3

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eEEE-EeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EVAS-WMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~~~-~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      .+.+|++|+.+..||.+..+ .+.+ .+.|...|.++.-+| ....+++|+.+-++.+||.+.+.
T Consensus       180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence            57899999999999998433 2333 467888889998775 46778888666555555555433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=5.8e-05  Score=41.77  Aligned_cols=55  Identities=20%  Similarity=0.347  Sum_probs=40.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe--CCC-----CCCeEEEEcCCCcEEEEc--CCcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM--SFD-----TEPPVIKWTPGSLMFVTG--SSELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~--~~~-----~~v~~v~~~~~~~~~~s~--~~~~~~~~   56 (69)
                      .+++|++|.+|++||++....+..+.  -|.     ..|..++..|.+.+++++  |...+++.
T Consensus       196 m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  196 MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence            47899999999999998765544441  222     457788889999999998  44455543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.02  E-value=2.9e-05  Score=49.40  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCCcCccc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGAYV   66 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~   66 (69)
                      +++++.|+|..+++|++++++... ..-+|.+++-.+.|.|.  .+++++.+  .++|-++...++.+.
T Consensus       188 ~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~  254 (967)
T KOG0974|consen  188 RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYD  254 (967)
T ss_pred             cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhh
Confidence            478999999999999999987655 55789999988889988  66776554  777766666555544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.00  E-value=1.7e-05  Score=48.86  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=39.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~~~~   63 (69)
                      .+++|+.|..|++|.-  ++.+..+.+|+..|+.+.+-++..++.++ |..++.|..+.+-+.
T Consensus       153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~  213 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLL  213 (745)
T ss_pred             cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceee
Confidence            4677888888888775  45566778888888888877765544333 445666655444333

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=3.1e-05  Score=44.55  Aligned_cols=61  Identities=13%  Similarity=0.156  Sum_probs=44.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC--CCcEEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP--GSLMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~s~~~~~~~~~~~~~~~   62 (69)
                      .++++...|.|++||..+++.+..+.++...++.++|..  ....+.+++.+..+.+||++..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~  104 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ  104 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc
Confidence            367888889999999999888888899988888888865  3344555555544445555543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=97.96  E-value=3.4e-06  Score=53.07  Aligned_cols=56  Identities=21%  Similarity=0.431  Sum_probs=49.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      +++++|++|..++||...++..+....+|.+.+..++.+.+..++++++.+  |++|.
T Consensus       203 ~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  203 RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            368999999999999999888888899999999999988888889988887  77773

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=97.95  E-value=1.8e-05  Score=44.88  Aligned_cols=55  Identities=20%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             eCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCc-EEEEcCCcEEEEcCCCCC
Q 035275            7 SGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         7 ~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~~~~~~   61 (69)
                      ..|+++..||.++-.....+ ..|..+++.+.|+|+.. .+++++.+..+.+||.++
T Consensus       190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence            45789999999976655555 57888899999999865 566776665555555554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.93  E-value=0.0001  Score=44.72  Aligned_cols=57  Identities=25%  Similarity=0.454  Sum_probs=42.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .++.|+.||.|.+||...+..  .+....-....++|+|++.+++.+++...++.||+.
T Consensus       273 kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  273 KLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             eEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            578899999999999876632  222233345789999999999998877666666653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.91  E-value=0.00015  Score=43.80  Aligned_cols=55  Identities=16%  Similarity=0.279  Sum_probs=44.0

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      +++|..+|.|.||+..+.+...+...|++.|.++..-.++.++ ||..+.++-.||
T Consensus       260 viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd  314 (626)
T KOG2106|consen  260 VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD  314 (626)
T ss_pred             EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc
Confidence            6789999999999998777666667999999999888887655 486666655555

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.91  E-value=0.00019  Score=42.66  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=44.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEcC--CcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFD--TEPPVIKWTPGSLMFVTGS--SELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~s~~--~~~~~~~~   57 (69)
                      .||++++.||...+.|..++..++......  -.+.+.+|+|++.+++++.  ..+.||..
T Consensus       316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence            489999999999999999998765543322  2357999999999999984  45777753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=97.90  E-value=8.7e-05  Score=46.61  Aligned_cols=57  Identities=21%  Similarity=0.343  Sum_probs=46.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEe---CCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      ++++++++|..|+|||+.+++..+.++   +|.+....+...|.+..+++++.+  +.++.+
T Consensus       609 k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  609 KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence            478999999999999999999888774   566778889999999999987555  555443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=5.7e-05  Score=46.31  Aligned_cols=41  Identities=37%  Similarity=0.698  Sum_probs=33.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL   43 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~   43 (69)
                      ++++|+.||+|++|.+.++..+..+. ..+.|.||+|+|...
T Consensus       414 wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~  454 (733)
T KOG0650|consen  414 WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD  454 (733)
T ss_pred             eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC
Confidence            68999999999999999998765542 334689999998653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.88  E-value=9.1e-06  Score=45.42  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=46.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~   60 (69)
                      .+++|++||.+.+||.+...... .+..|.+.+..+-|+|. ...+.+++++..+|.||..
T Consensus       194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            47889999999999998774433 35789999999999985 4566677778888888765

>smart00320 WD40 WD40 repeats

Probab=97.87  E-value=0.00014  Score=27.30  Aligned_cols=36  Identities=6%  Similarity=0.090  Sum_probs=26.0

Q ss_pred             eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275           22 EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus        22 ~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      ....+..|...+.++.|.+....+++++.+..+..|
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~   39 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLW   39 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence            345566788889999999988888887655444444

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.87  E-value=0.00016  Score=38.64  Aligned_cols=51  Identities=29%  Similarity=0.547  Sum_probs=35.7

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC-----CcEEEEcC
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-----SELSFWIP   57 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~-----~~~~~~~~   57 (69)
                      +.|..++.|.+||.+ ++.+..+  +...+..+.|+|++.+++.++     +++.+|..
T Consensus        77 i~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~  132 (194)
T PF08662_consen   77 IYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV  132 (194)
T ss_pred             EEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            445566789999996 4445555  345678999999999888763     23666554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=97.87  E-value=3e-05  Score=44.53  Aligned_cols=60  Identities=18%  Similarity=0.271  Sum_probs=46.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~   61 (69)
                      +++.|+.-|-|++-|+.++.....+.+|...|+.+++.|.. +++++++.+-.+.+|+++.
T Consensus       107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen  107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            56777778899999999888888999999999999999965 5666776654444444543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=0.00019  Score=42.73  Aligned_cols=61  Identities=18%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      .+++.+.|.++++||+..+..+.... .+..+.++...|.+..+..|..+..||+.++..+.
T Consensus       190 rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~  250 (476)
T KOG0646|consen  190 RLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS  250 (476)
T ss_pred             eEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence            57899999999999998887655443 44567899999999888888889999988776655

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=0.00011  Score=42.38  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=45.8

Q ss_pred             CEEEEEeCCCcEEEEEC---CCCc-----eEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSV---RSGK-----EVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~---~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~   60 (69)
                      +++++++..-.|++|..   ..|.     ..-++.+|...|...+|+++...+++.  |+.+++|..|++
T Consensus       241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            46777777778999997   2332     245789999999999999998887776  556888876654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.82  E-value=0.00013  Score=46.64  Aligned_cols=64  Identities=13%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCcc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAY   65 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~~   65 (69)
                      ++++|+--+.|.+|+....+....+.+|.+.+..+.++.++..+++.+++..+.+|++++.+..
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~  210 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL  210 (967)
T ss_pred             EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc
Confidence            5788888899999999744434468999999999999999999998866644444545554443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=4.6e-05  Score=43.85  Aligned_cols=53  Identities=25%  Similarity=0.422  Sum_probs=42.1

Q ss_pred             CCcEEEEECCCCce-EEEE-eCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCCC
Q 035275            9 DGSVYAWSVRSGKE-VASW-MSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         9 d~~v~~wd~~~~~~-~~~~-~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +-.|.+||++.... +.++ ..|..-|++++|.|+ .++++||+.+..+-++|++.
T Consensus       142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            34689999988765 6665 689999999999986 56889998887777777653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=97.81  E-value=0.00014  Score=44.05  Aligned_cols=62  Identities=13%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      .+++.+.|.+|.+||.........+ .+..+...++|.++|..++.|.....+..+|++.++.
T Consensus       223 l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  223 LLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             eEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence            5788999999999999876654444 3456778999999999999998888888888776554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.81  E-value=0.00017  Score=41.89  Aligned_cols=56  Identities=14%  Similarity=0.358  Sum_probs=42.7

Q ss_pred             EEEEEeCCCc-EEEEECCCCceEEEEe-C-CCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            2 FVISGSGDGS-VYAWSVRSGKEVASWM-S-FDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~-v~~wd~~~~~~~~~~~-~-~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      +++++++.|+ |+++.+.+|..+..+. + ....|..++|+|+..++++++..  +.++..
T Consensus       187 llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  187 LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence            6899999996 6799999998887773 2 23556799999999988877554  555543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=97.77  E-value=7.4e-05  Score=43.80  Aligned_cols=59  Identities=22%  Similarity=0.410  Sum_probs=43.9

Q ss_pred             EEEEEeCCCcEEEEECC--------C-----Cc---eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVR--------S-----GK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~--------~-----~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .++||+++|.|.+|-..        +     .+   ....+.+|...+..++|+|++.++++++.+..+.+||.+
T Consensus        79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen   79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence            58999999999999876        2     10   133457899999999999999999988655444444443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=5.1e-05  Score=46.69  Aligned_cols=50  Identities=16%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE   51 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~   51 (69)
                      .+++|...|+|.+||...+........|.+.|.+++..+++..+.+++-+
T Consensus       217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd  266 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVD  266 (691)
T ss_pred             cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCC
Confidence            58999999999999999998877888899999999999988777776544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.00013  Score=44.89  Aligned_cols=59  Identities=17%  Similarity=0.297  Sum_probs=48.4

Q ss_pred             EEEEEeCCCcEEEEECCCC-----ceEEEE--eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSG-----KEVASW--MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~-----~~~~~~--~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .+++++.|.+|++|.++..     ...+++  ..|+.+|..+.|-.+...++++|+-+.+|.+-+.
T Consensus       749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFig  814 (1034)
T KOG4190|consen  749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIG  814 (1034)
T ss_pred             ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeeccccc
Confidence            4789999999999999653     223444  6899999999999888899999999999986554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.74  E-value=0.00036  Score=41.72  Aligned_cols=63  Identities=13%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             EEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEEEEcCCCCCcCc
Q 035275            2 FVISGSGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~--~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      .+++++.|+++.+|.++-.  ..+.++.-...+|.+..|.|++. .+++++....++.||+...+.
T Consensus       227 lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  227 LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            5789999999999999643  23455555677889999999998 777888888888888765443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.70  E-value=0.00023  Score=41.11  Aligned_cols=60  Identities=10%  Similarity=0.094  Sum_probs=47.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~~~~   61 (69)
                      .++.|+....+-+|....+.++..+.+|.+.|+.++|.++++.+.+|.. +-.|-.||++.
T Consensus       222 ~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  222 TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            5778888888888888888888888999999999999999999888733 33444444543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.70  E-value=0.00022  Score=42.50  Aligned_cols=54  Identities=17%  Similarity=0.278  Sum_probs=38.3

Q ss_pred             EEEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEE
Q 035275            2 FVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFW   55 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~----~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~   55 (69)
                      .+++|...|.|-+||+.+..    .......|.++|.++.|+|.. ..+.+++.+..+.
T Consensus       202 lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  202 LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            58899999999999995332    244567899999999999853 3455544443333

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.00068  Score=38.91  Aligned_cols=62  Identities=21%  Similarity=0.359  Sum_probs=42.8

Q ss_pred             CEEEEEeCCCcEEEEECCC--Cc-------eEEEEeCCCCCCeEEEEcCC--CcEEEEcCCc--EEEE-cCCCCCc
Q 035275            1 MFVISGSGDGSVYAWSVRS--GK-------EVASWMSFDTEPPVIKWTPG--SLMFVTGSSE--LSFW-IPDLSKL   62 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~--~~-------~~~~~~~~~~~v~~v~~~~~--~~~~~s~~~~--~~~~-~~~~~~~   62 (69)
                      +-+++++.|+++.||.-..  .+       ..+.+...++.|..|+|.|.  +.++++++.+  ++|+ .+|+-++
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL  149 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL  149 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence            3589999999999999732  11       23455677888999999985  5778877555  5555 3444433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.67  E-value=0.0013  Score=36.11  Aligned_cols=54  Identities=11%  Similarity=0.025  Sum_probs=37.0

Q ss_pred             EEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCC
Q 035275            5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDL   59 (69)
Q Consensus         5 s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~   59 (69)
                      +...++.+.+||..+++....+ .+...+.++.|+|++..++++   +.++.+|..+.
T Consensus       224 ~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       224 ALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            3344567999999887755444 234567899999999877664   34577766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.67  E-value=0.00027  Score=42.06  Aligned_cols=63  Identities=24%  Similarity=0.266  Sum_probs=47.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEE----E------------E--eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVA----S------------W--MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~----~------------~--~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      +.++++.+|.|.=|++.+++...    .            .  ..|.+.+.+++.++++..+++++.+..+.+|+..+++
T Consensus       156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e  235 (479)
T KOG0299|consen  156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE  235 (479)
T ss_pred             ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence            67899999999999998875220    0            1  2567778999999999999999777666556666555


Q ss_pred             c
Q 035275           64 A   64 (69)
Q Consensus        64 ~   64 (69)
                      .
T Consensus       236 h  236 (479)
T KOG0299|consen  236 H  236 (479)
T ss_pred             h
Confidence            4

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.60  E-value=0.00037  Score=41.32  Aligned_cols=55  Identities=16%  Similarity=0.414  Sum_probs=42.9

Q ss_pred             EEEEEeCCCcEEEEECCCCc-----------------------eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGK-----------------------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-----------------------~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      .+++|+++-.|.+|.+....                       .+..+.+|...++.|.|+|...++++++-+  +.+|.
T Consensus       306 ~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  306 TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence            37899999999999985311                       245678999999999999999998887554  66664

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=97.59  E-value=0.00022  Score=44.32  Aligned_cols=59  Identities=24%  Similarity=0.483  Sum_probs=44.3

Q ss_pred             EEEEEeCCCcEEEEECCCCc------------------------eE-------EEEeCCCCCCeEEEEcCCCcEEEEc--
Q 035275            2 FVISGSGDGSVYAWSVRSGK------------------------EV-------ASWMSFDTEPPVIKWTPGSLMFVTG--   48 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~------------------------~~-------~~~~~~~~~v~~v~~~~~~~~~~s~--   48 (69)
                      +++|+++|..|++|.+.-+.                        .+       ..+++|+.=|.++.|+|.+..+.++  
T Consensus       208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa  287 (764)
T KOG1063|consen  208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA  287 (764)
T ss_pred             EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc
Confidence            58999999999999873221                        01       1135899999999999998665554  


Q ss_pred             CCcEEEEcCCCC
Q 035275           49 SSELSFWIPDLS   60 (69)
Q Consensus        49 ~~~~~~~~~~~~   60 (69)
                      |..+++|.++.+
T Consensus       288 DksmiiW~pd~~  299 (764)
T KOG1063|consen  288 DKSMIIWKPDEN  299 (764)
T ss_pred             CcceEEEecCCc
Confidence            777999988765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.00038  Score=42.75  Aligned_cols=60  Identities=27%  Similarity=0.365  Sum_probs=43.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE------eCCCCC-----CeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASW------MSFDTE-----PPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~------~~~~~~-----v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      ++++|..+|.|.+||.++...+..+      ..|.+.     |..+.|+.++..++.|..+..++++|++.
T Consensus       189 Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  189 LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence            6788888999999999876544333      234443     88999998899999886665555555553

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.54  E-value=0.00098  Score=37.12  Aligned_cols=54  Identities=22%  Similarity=0.631  Sum_probs=42.1

Q ss_pred             EEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEc--CCcEEEE
Q 035275            2 FVISGSG-DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTG--SSELSFW   55 (69)
Q Consensus         2 ~~~s~~~-d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~--~~~~~~~   55 (69)
                      ++++++. |+.+.+|+...+.....+..|...+.++.|+|++. .++++  +..+.+|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w  226 (466)
T COG2319         169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW  226 (466)
T ss_pred             EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence            4566664 89999999988777777888999999999999886 55553  4456666

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.53  E-value=0.00084  Score=40.77  Aligned_cols=28  Identities=18%  Similarity=0.494  Sum_probs=22.6

Q ss_pred             CCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275           30 DTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus        30 ~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      +.++.+|+|+|++.++|.++.+-.++++
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            6789999999999999998766444443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.49  E-value=0.00022  Score=28.13  Aligned_cols=16  Identities=44%  Similarity=0.960  Sum_probs=14.5

Q ss_pred             CEEEEEeCCCcEEEEE
Q 035275            1 MFVISGSGDGSVYAWS   16 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd   16 (69)
                      +++++++.|+.|++||
T Consensus        24 ~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   24 NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SEEEEEETTSEEEEEE
T ss_pred             ccceeeCCCCEEEEEC
Confidence            4689999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=97.48  E-value=0.00088  Score=40.83  Aligned_cols=56  Identities=16%  Similarity=0.337  Sum_probs=40.3

Q ss_pred             EEEEEeCCCcEEEEECCC------C----ceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRS------G----KEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~------~----~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      .+.+|+-||.|+.|++..      .    .....+.+|.+.+-.+.+++....+++++.  .++.|.+
T Consensus       358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence            578999999999996532      1    123457899999989999987666777644  4555543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.48  E-value=0.00029  Score=43.14  Aligned_cols=58  Identities=24%  Similarity=0.226  Sum_probs=42.3

Q ss_pred             EEEEEeCCCcEEEEECC-CCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVR-SGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~-~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~   60 (69)
                      .+.+++ |..+++|... ...++..+..+...+.+++|||-. ..|++++.+.++.+||+.
T Consensus       413 ~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  413 NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            345555 8899999987 566677777888889999999965 466777666555555543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.46  E-value=0.0015  Score=41.83  Aligned_cols=58  Identities=12%  Similarity=0.195  Sum_probs=43.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe--CCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~   59 (69)
                      .++....|+.|++|+.........+.  .+...+.+++|+|.|..+|++  ++.+.+|.++.
T Consensus       202 ~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  202 TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            35556678899999987766555542  344448899999999999988  55688888774

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.45  E-value=0.0018  Score=41.05  Aligned_cols=61  Identities=16%  Similarity=0.402  Sum_probs=46.7

Q ss_pred             CEEEEEeCCCcEEEEECCC--C--ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRS--G--KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~--~--~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~~   61 (69)
                      ++++++..||+|.+|.--.  .  ...+.+.-|...|.++.|+++|..+.||+.+  .-.|.....+
T Consensus       218 ~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  218 RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            4789999999999997522  2  2345667798999999999999999999776  5556554444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.0038  Score=37.58  Aligned_cols=57  Identities=19%  Similarity=0.274  Sum_probs=38.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCC--eEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEP--PVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      .++..+.+|.|.+||++....+..+... +.+  ..++.++++..+|+|+....+-+++.
T Consensus       358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  358 ELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             EEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEecc
Confidence            3556667899999999887655555433 223  35566788899999987755555553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.40  E-value=0.00063  Score=40.85  Aligned_cols=55  Identities=11%  Similarity=0.291  Sum_probs=39.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~   56 (69)
                      +|+++++.|..++|||++.-..+.+... ..+...+++|..+.+.++-+..+.+|.
T Consensus       306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             cEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence            4789999999999999987654444433 344567888866655555577788984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.39  E-value=0.00015  Score=43.99  Aligned_cols=58  Identities=12%  Similarity=0.224  Sum_probs=38.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceE--EEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      +.|++|++-.++.|||+....+-  ..+....-.+..++.+|+..+..++  |++|.+|...
T Consensus       478 rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence            35788988889999999765432  2233333446778899997765554  5567777544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.38  E-value=0.0013  Score=43.45  Aligned_cols=56  Identities=16%  Similarity=0.302  Sum_probs=38.2

Q ss_pred             EEEEEeCCCcEEEEECCCC--c--eE---EEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSG--K--EV---ASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~--~--~~---~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      +++||+.||+|++|+...-  .  ..   ..+.....++.++.+.+.+..+|.+..+  +.+...
T Consensus      1063 ~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1063 LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred             eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence            6899999999999998642  1  11   2233345778899998888777766444  444433

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=97.36  E-value=0.00048  Score=42.93  Aligned_cols=56  Identities=21%  Similarity=0.347  Sum_probs=43.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      ++|++.+.|.++.+|......    .......|+..|=.++|+|++..+++++.|  +.+|-
T Consensus       585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            589999999999999985432    233467888877888999998889998766  55553

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.35  E-value=0.0017  Score=40.38  Aligned_cols=59  Identities=24%  Similarity=0.376  Sum_probs=42.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceE--EEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .++.|++||.+...+...+...  ..++-.++++.+++|+|++..++.|+.+..|..||..
T Consensus       124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence            3677889997777777666532  3456667999999999999988988766544444443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.34  E-value=0.00051  Score=42.07  Aligned_cols=40  Identities=15%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS   42 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~   42 (69)
                      .+++|++|.+.++||.. |..+..-..|..+|++++|+|+.
T Consensus       200 lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~  239 (737)
T KOG1524|consen  200 IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK  239 (737)
T ss_pred             ceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc
Confidence            57899999999999985 55565666788888888888883

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.0026  Score=38.88  Aligned_cols=58  Identities=12%  Similarity=0.094  Sum_probs=50.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      ++-|++.|+.+..|+.......+.+.+-...+..+.++|++.++++++.++.+|..+.
T Consensus       116 ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~  173 (541)
T KOG4547|consen  116 CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQIKVLDIET  173 (541)
T ss_pred             ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccceEEEEEccC
Confidence            5778999999999999988878888877777889999999999999999999886543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.31  E-value=0.002  Score=36.21  Aligned_cols=58  Identities=14%  Similarity=0.197  Sum_probs=43.9

Q ss_pred             CEEEEEeCCCcEEEEECCCC---------c-eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSG---------K-EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~---------~-~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      ++++.|+.+|.|.+..+.+-         + .+....+|++++..+.|.. ..++..+|+.++-|.|+.
T Consensus        23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-~~Lls~gdG~V~gw~W~E   90 (325)
T KOG0649|consen   23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-DFLLSGGDGLVYGWEWNE   90 (325)
T ss_pred             eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-hheeeccCceEEEeeehh
Confidence            47899999999999987541         1 2334478999999999983 345555688899999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.29  E-value=0.0026  Score=35.40  Aligned_cols=51  Identities=22%  Similarity=0.504  Sum_probs=39.6

Q ss_pred             eCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcC---CcEEEEcC
Q 035275            7 SGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGS---SELSFWIP   57 (69)
Q Consensus         7 ~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~---~~~~~~~~   57 (69)
                      ..|+.+.+|+... ......+..|...+..+.|+|++..+++++   ..+.+|..
T Consensus       131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (466)
T COG2319         131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL  185 (466)
T ss_pred             CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEc
Confidence            3388999999987 566777889999999999999998777664   34556543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.28  E-value=0.0012  Score=40.59  Aligned_cols=56  Identities=18%  Similarity=0.437  Sum_probs=37.9

Q ss_pred             EEEEEeCCCcEEEEECCCCce--EE----EEeCCCCCCeEEEEcCCCc--EEEE--cCCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKE--VA----SWMSFDTEPPVIKWTPGSL--MFVT--GSSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~--~~----~~~~~~~~v~~v~~~~~~~--~~~s--~~~~~~~~~~   57 (69)
                      .++.|..+|.|.+||+..+..  ..    ....|..++..+.|..+..  -+++  .|+.++.|..
T Consensus       257 ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~  322 (555)
T KOG1587|consen  257 LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT  322 (555)
T ss_pred             eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence            588999999999999976543  22    2256788888888864321  1333  3667777743

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.00031  Score=45.37  Aligned_cols=51  Identities=8%  Similarity=0.217  Sum_probs=35.9

Q ss_pred             cEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCC
Q 035275           11 SVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus        11 ~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~   61 (69)
                      .|.+||++.. .++..+.+|...|.++.|++.. .+++|+..|.++..|+.+.
T Consensus       233 viqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  233 VIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             eeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            5889998754 3456678999999999999876 6666665554444444443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.0016  Score=42.72  Aligned_cols=64  Identities=14%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             EEEEEeCCCcEEEEECCCCce--EEEEeCCC--C-CCeEEEEcCCCcEEEEcC-CcEEEEcCCCCCcCcc
Q 035275            2 FVISGSGDGSVYAWSVRSGKE--VASWMSFD--T-EPPVIKWTPGSLMFVTGS-SELSFWIPDLSKLGAY   65 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~--~~~~~~~~--~-~v~~v~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~   65 (69)
                      .++||+.||.|.+||++....  ......|.  | ..+++..++....+++|+ ..+.||....+.+..+
T Consensus      1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNII 1340 (1387)
T ss_pred             ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhccc
Confidence            379999999999999987422  22333333  3 478999999999999986 6699998777666554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.0024  Score=38.99  Aligned_cols=51  Identities=6%  Similarity=0.236  Sum_probs=40.6

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-----CcEEEEc---CCcEEEEcCCC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-----SLMFVTG---SSELSFWIPDL   59 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~s~---~~~~~~~~~~~   59 (69)
                      .+.|++||..+.+.+..+.+|.++|++++|.-.     |..+.++   ...+.+|..+.
T Consensus       163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            378999999999988899999999999999755     4455544   34588998665

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.21  E-value=0.0016  Score=38.09  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=37.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC---CcEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS---SELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~---~~~~~~   55 (69)
                      +++.+++.||.|.++|+.+.+.+..+..-.. ..++++++++..++.++   .++.++
T Consensus        49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   49 RYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             SEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEe
Confidence            3567778899999999999987777754333 37899999998777663   345543

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0026  Score=37.48  Aligned_cols=61  Identities=16%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEE-EeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      +++.+|..-|.+..+|.+.+..+.+ +.+-.+.+..+...|.+.++++++-+.++.++|...
T Consensus       260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            3577888889999999999887766 788899999999999999999987776666665543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.15  E-value=0.0055  Score=36.13  Aligned_cols=59  Identities=20%  Similarity=0.361  Sum_probs=39.5

Q ss_pred             EEEEeCCCcEEEEECCCCce--------------EEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCCCcC
Q 035275            3 VISGSGDGSVYAWSVRSGKE--------------VASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLSKLG   63 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~--------------~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~~~~   63 (69)
                      ++.|+. +-|.+|..+....              +.+-++| -+|..++|++++..++++   |..+++|.+|.....
T Consensus       156 lavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~  231 (445)
T KOG2139|consen  156 LAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI  231 (445)
T ss_pred             eeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence            455555 4499999754211              1111334 568999999999988886   567999998876443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.14  E-value=0.00025  Score=44.47  Aligned_cols=56  Identities=23%  Similarity=0.408  Sum_probs=40.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC-CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~-~~~~~~~~~   58 (69)
                      +.++||+.|..|.+|...-...+  --+|...|.|+.|+|-...++|++ .+..+|..+
T Consensus        66 krFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~  122 (1081)
T KOG1538|consen   66 KRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE  122 (1081)
T ss_pred             ceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence            35899999999999997533322  246888899999999777777653 345566543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.10  E-value=0.0041  Score=39.56  Aligned_cols=58  Identities=12%  Similarity=0.229  Sum_probs=43.1

Q ss_pred             EEEEEeCCCcEEEEECCC------CceEEEE----eCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRS------GKEVASW----MSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~------~~~~~~~----~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~   59 (69)
                      .+++++.||.+++|....      ....+..    ..|..++....|+.+|..++.+ ++.+.+|.++.
T Consensus       471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence            367888999999999832      2222211    2478888999999999877766 77899998876

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.07  E-value=0.0088  Score=35.02  Aligned_cols=58  Identities=14%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      +...+.++.|.+|++...+=...+..-.+++..++|+|++..+...   +..+.+|..+..
T Consensus        64 lC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   64 LCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             eeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence            3455677899999997666556666566678899999999665544   335777765544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.07  E-value=0.0028  Score=37.75  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=41.5

Q ss_pred             CEEEEEeCCCcEEEEECCC------CceEEEEe--CCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRS------GKEVASWM--SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~------~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++|++|++|..+.+|+++.      .+++ .++  .|..-|.|+.|.....++.+|.....+.+-|++
T Consensus        69 ~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE  135 (609)
T KOG4227|consen   69 RFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE  135 (609)
T ss_pred             eEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence            4799999999999999853      2333 333  455778999999888888888654444443443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.06  E-value=0.0023  Score=41.43  Aligned_cols=56  Identities=11%  Similarity=0.167  Sum_probs=46.3

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      +++|.+-|.+.+|...+.+..+.-..|+.++..++|+|+|..+.+++.-  +..|..|
T Consensus        74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5677788899999988777666667899999999999999999999764  6666655

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.06  E-value=0.0043  Score=40.86  Aligned_cols=58  Identities=19%  Similarity=0.292  Sum_probs=42.7

Q ss_pred             EEEEEeCCCcEEEEECCCCce---EEEEeCCCCC--CeEEEEcCCCc-EEEEcCC--cEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKE---VASWMSFDTE--PPVIKWTPGSL-MFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~---~~~~~~~~~~--v~~v~~~~~~~-~~~s~~~--~~~~~~~~~   59 (69)
                      .++.|..||.|.+||.+...+   +..+..|...  |..+.+.++|. .+++++.  ++.+|..+.
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            578899999999999976543   4556788876  88899988664 3777754  566665554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.03  E-value=0.0018  Score=37.77  Aligned_cols=61  Identities=13%  Similarity=0.371  Sum_probs=44.7

Q ss_pred             EEEEEeCCCcEEEEECCCCce-EEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~~~   62 (69)
                      .++||++|..+.+||+.-.+. ...+.+|.+.+..+++.+--..+.++++  -+.+|.++....
T Consensus       211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            588999999999999964432 3456789998888887765556666644  488888775543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.95  E-value=0.014  Score=34.62  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=34.1

Q ss_pred             EEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCC
Q 035275            2 FVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d---~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~   59 (69)
                      .++..+.+   ..|.+||+.++... .+....+....++|+|++..++.+   ++...+|.+|.
T Consensus       217 ~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        217 KLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             EEEEEEecCCCcEEEEEeCCCCceE-EEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence            34444433   36999999877532 222222233468899999866643   44567787665

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=96.95  E-value=0.0055  Score=35.47  Aligned_cols=56  Identities=23%  Similarity=0.479  Sum_probs=42.8

Q ss_pred             EEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      .+++|+.|..-++|....+.   +...+..+++...+|.|+|.++.|+.+++-  +.+|-+
T Consensus        69 rIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~  129 (361)
T KOG1523|consen   69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY  129 (361)
T ss_pred             ceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence            47899999999999985442   344556788888999999999999988654  445443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.89  E-value=0.0093  Score=34.50  Aligned_cols=49  Identities=14%  Similarity=0.163  Sum_probs=38.0

Q ss_pred             CCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc---EEEEc
Q 035275            8 GDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWI   56 (69)
Q Consensus         8 ~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~---~~~~~   56 (69)
                      .-|.|.+-|+....  +...+.+|...|.|++.+.+|.++||++..   |+||.
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd  210 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD  210 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence            34678888875433  246678999999999999999999999765   66654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=96.86  E-value=0.0039  Score=36.04  Aligned_cols=54  Identities=19%  Similarity=0.304  Sum_probs=41.2

Q ss_pred             EEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            3 VISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      ++.+-....|.||......   ....+..|+..+.+++|+|..+.|++++.+  ..+|.
T Consensus        25 iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen   25 IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence            5566666789999886554   355678999999999999999888888554  55554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.0087  Score=35.42  Aligned_cols=55  Identities=18%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEE-EeCCCCCCeEEEEcCCCcEEEEc--CCcEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTG--SSELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~   55 (69)
                      ++++.|+.||.|.+++..+-+.+.. -..|..-|+.+.|+|+....++.  +.+..+-
T Consensus       294 kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  294 KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            4788999999999999976554333 36898999999999987655543  4444444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.85  E-value=0.0036  Score=35.62  Aligned_cols=41  Identities=12%  Similarity=0.068  Sum_probs=31.6

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eE----EEEeCCCCCCeEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EV----ASWMSFDTEPPVIKWTPGS   42 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~----~~~~~~~~~v~~v~~~~~~   42 (69)
                      .++++.+||++.|||++.-. ++    .+-..|.+.++.+.|+|.+
T Consensus       217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence            47899999999999997643 22    2235688999999999754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.75  E-value=0.013  Score=34.09  Aligned_cols=63  Identities=14%  Similarity=0.242  Sum_probs=46.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      +++++|...|.+.+++..+-+....+..-. ..|..+-++..+.+++.-..+..|..+++.++.
T Consensus       166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~  229 (405)
T KOG1273|consen  166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID  229 (405)
T ss_pred             CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence            478999999999999998876555554333 567788888888888876666666666666443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.67  E-value=0.015  Score=34.37  Aligned_cols=53  Identities=15%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             EEEEeC-CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEE
Q 035275            3 VISGSG-DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFW   55 (69)
Q Consensus         3 ~~s~~~-d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~   55 (69)
                      +++++- |..|.+||.+++...-...--.+.+.-+.|+|++..+..+  |...++|
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw  265 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW  265 (445)
T ss_pred             EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence            344443 3479999999875322221223556788999998765554  4445565

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=96.65  E-value=0.0083  Score=36.80  Aligned_cols=52  Identities=27%  Similarity=0.551  Sum_probs=37.3

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--------CcEEEEcCCCCCcC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--------SELSFWIPDLSKLG   63 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--------~~~~~~~~~~~~~~   63 (69)
                      |.+.|||+.+.+.+........  .-+.|+|+|.+|.++.        ..+.||.+....+.
T Consensus       336 G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  336 GDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             CceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            6899999988766655544433  4677999999888763        34888887665443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.64  E-value=0.027  Score=34.58  Aligned_cols=57  Identities=18%  Similarity=0.329  Sum_probs=47.5

Q ss_pred             EEEEeCCC-cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            3 VISGSGDG-SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~-~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++.|..|| .+-++|.++++ +..+...-+.|..+..+|++..++.+.....+|+.|+.
T Consensus       374 ~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             eEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            56677788 79999998776 66777777889999999999988888888999987765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=96.63  E-value=0.0065  Score=37.93  Aligned_cols=57  Identities=18%  Similarity=0.377  Sum_probs=42.5

Q ss_pred             EEEEEeCCCcEEEEECCCCc------eEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK------EVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~------~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .|+.+.+||.|.++|.....      .+..+..|...|..+.|.|....++++++  .+++|...
T Consensus        66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk  130 (720)
T KOG0321|consen   66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK  130 (720)
T ss_pred             eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec
Confidence            47889999999999986532      24556789999999999996666777644  46666543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.018  Score=34.15  Aligned_cols=61  Identities=16%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             EEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~   62 (69)
                      .|+++..-+.+++||...+ +++.++..-..++.++...|.+.++.+++....+-.||.+..
T Consensus       218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence            4788888899999999875 456677666788899999999999999988777777777643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.62  E-value=0.0014  Score=40.54  Aligned_cols=50  Identities=16%  Similarity=0.211  Sum_probs=42.0

Q ss_pred             EEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275            2 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE   51 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~   51 (69)
                      .++.|+.|+++..+|++-+ ++...+.-|...++.|+|++...++++++.+
T Consensus       621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            4678899999999999644 5567788899999999999999999998554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.60  E-value=0.012  Score=37.83  Aligned_cols=51  Identities=10%  Similarity=0.114  Sum_probs=38.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE   51 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~   51 (69)
                      .+++.|+.+|.|++||-...+..+.+++-..+|..+..+.+|..++..+..
T Consensus       589 G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  589 GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            368999999999999953333344567778999999999999876655443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.45  E-value=0.012  Score=34.70  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=37.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++++++..|..|++-.......+..+ -+|+.=|..++.-++.. +.|+++|.++++||+.
T Consensus       164 ~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  164 QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT  223 (390)
T ss_pred             CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence            46788888888887665443334444 57988888887776554 5666555444444444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=96.42  E-value=0.01  Score=36.56  Aligned_cols=40  Identities=23%  Similarity=0.445  Sum_probs=35.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP   40 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~   40 (69)
                      +|+++|++|-.|.||....++.+..-.+|+.=|..|+|.|
T Consensus       345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            6899999999999999988887777789999888998874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.41  E-value=0.012  Score=35.00  Aligned_cols=51  Identities=10%  Similarity=-0.037  Sum_probs=35.3

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      +..|.+||.+... ...+..+...+...+|+|++..++..   +....+|+||..
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~  236 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR  236 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC
Confidence            3589999986544 45566777888999999999877654   223445555543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=96.41  E-value=0.0099  Score=34.92  Aligned_cols=58  Identities=10%  Similarity=0.134  Sum_probs=36.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCce---EEEEeCCCCCCe--EEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKE---VASWMSFDTEPP--VIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~---~~~~~~~~~~v~--~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      ++|++.+.+|+|++||.+.-+.   +.+..+|.....  -+-..+...+++++++|  .+||..+
T Consensus       312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            3677778899999999976544   666677732211  11223455566666555  6777655

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.40  E-value=0.0078  Score=25.28  Aligned_cols=30  Identities=13%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             CCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275           30 DTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus        30 ~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      ...|.+++|+|...++|.+..+..+++++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            345889999999999888755544544433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.25  E-value=0.063  Score=31.96  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL   59 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~   59 (69)
                      ..|.+||+.++.. ..+..+.+.+....|+|++..++ +.  +.+..+|.++.
T Consensus       226 ~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        226 PRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             CEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            5799999987753 44555666677889999997654 33  33455665554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.18  E-value=0.012  Score=37.69  Aligned_cols=56  Identities=13%  Similarity=0.392  Sum_probs=43.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCce--------------E-EEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKE--------------V-ASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~--------------~-~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      .|+++|+.||.+++-.+.+...              + ..+.+|.+.|..+.|+.+.+-+.++|++  |.+|.
T Consensus        27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm   99 (1189)
T KOG2041|consen   27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM   99 (1189)
T ss_pred             CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence            4789999999999988765320              1 1357899999999999988888888776  66663

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.94  E-value=0.12  Score=28.47  Aligned_cols=58  Identities=21%  Similarity=0.368  Sum_probs=37.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEE-------Ee-------CCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVAS-------WM-------SFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~-------~~-------~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~   58 (69)
                      +++++...+|.+++||+.+.+.+..       +.       .....|..+.++.+|..+++- +++...|..+
T Consensus        23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            3677888899999999988763211       11       244566777788888766653 4455554433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.92  E-value=0.14  Score=30.05  Aligned_cols=49  Identities=14%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL   59 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~   59 (69)
                      ..|.+||+.++.. ..+..+.+....+.|+|++..++ +.  +....+|.++.
T Consensus       214 ~~i~v~d~~~g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       214 PEIYVQDLATGQR-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             cEEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            3699999987753 33444555566788999987554 33  23344554443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=95.88  E-value=0.16  Score=30.34  Aligned_cols=48  Identities=13%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL   59 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~   59 (69)
                      .|.+||+.++.. ..+....+......|+|++..++ +.  +....+|..+.
T Consensus       221 ~I~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        221 VVYVHDLATGRR-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             EEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            599999987763 33443445556789999997665 33  34466776554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=95.83  E-value=0.15  Score=29.07  Aligned_cols=55  Identities=9%  Similarity=0.136  Sum_probs=34.2

Q ss_pred             EEEEeCCCcEEEEECCC-Cc--eEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRS-GK--EVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~-~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~   58 (69)
                      +++...++.|.+|++.+ ++  .+..+. +.+....+.++|++..+..+   +..+.+|..+
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~   65 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA   65 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence            44556788999999964 33  222232 33456788999998766443   2346666554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=95.83  E-value=0.044  Score=32.25  Aligned_cols=58  Identities=19%  Similarity=0.209  Sum_probs=34.1

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      ++-..++.|.+.|..+.+.+..+.........+.|+|++..+..++.+..+-.+|+..
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~   67 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT   67 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc
Confidence            4555678999999999888877765434334577899886544443333344444443

...

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=95.74  E-value=0.023  Score=32.41  Aligned_cols=40  Identities=15%  Similarity=0.436  Sum_probs=30.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceE----------EEEeCCCCCCeEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEV----------ASWMSFDTEPPVIKWTPG   41 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~----------~~~~~~~~~v~~v~~~~~   41 (69)
                      +++.|.++|.+.+||+.++...          .....|..++..+.|.+.
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~  216 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS  216 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh
Confidence            4788999999999999887322          223568889999988764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=95.67  E-value=0.037  Score=38.79  Aligned_cols=57  Identities=21%  Similarity=0.385  Sum_probs=44.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe-CCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      +.++|+.||.+.+|....+..+.++. .-..++..+.|+.+|+-+..+  |+.+.+|+..
T Consensus      2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            57899999999999998888877763 333888899999998776655  5567777654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=95.54  E-value=0.027  Score=39.35  Aligned_cols=54  Identities=15%  Similarity=0.295  Sum_probs=38.1

Q ss_pred             eCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            7 SGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         7 ~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++++.+.+||..-.. .-.....|.+.+.++++.|+...+++|+.+..+.+||++
T Consensus      2312 ~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             CCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence            345689999974322 111227899999999999999999999766555555543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=95.52  E-value=0.034  Score=32.94  Aligned_cols=44  Identities=11%  Similarity=0.152  Sum_probs=31.7

Q ss_pred             EEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEc
Q 035275           12 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI   56 (69)
Q Consensus        12 v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~   56 (69)
                      +.+|....+. ...+.+|-..+..|.++|+..+++++|.+-.||+
T Consensus       134 ~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRv  177 (390)
T KOG3914|consen  134 FDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRV  177 (390)
T ss_pred             eeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEE
Confidence            3444443322 3345789999999999999999999988766554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=95.50  E-value=0.17  Score=28.90  Aligned_cols=56  Identities=13%  Similarity=0.132  Sum_probs=33.2

Q ss_pred             EEEEEe-CCCcEEEEECCCCc-eE---EEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCC
Q 035275            2 FVISGS-GDGSVYAWSVRSGK-EV---ASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~-~d~~v~~wd~~~~~-~~---~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~   58 (69)
                      +++++. .++.|.+|+++... .+   ...... .....+.++|++..+.++   +..+.+|..+
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            455554 35789999985432 11   122111 123578899999877654   3457777655

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.49  E-value=0.19  Score=30.03  Aligned_cols=49  Identities=8%  Similarity=0.043  Sum_probs=33.5

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      .|.++|.+.. ....+..+...+...+|+|++..++..   .++..+|.+++.
T Consensus       183 ~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~  234 (435)
T PRK05137        183 RLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE  234 (435)
T ss_pred             EEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC
Confidence            6888887544 456677788888999999999876643   223455555543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=95.45  E-value=0.22  Score=29.80  Aligned_cols=48  Identities=13%  Similarity=0.245  Sum_probs=31.4

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-C--CcEEEEcCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-S--SELSFWIPDL   59 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~--~~~~~~~~~~   59 (69)
                      .|.+||+.++. ...+..+...+....|+|++..++.. +  ....+|..+.
T Consensus       268 ~I~~~d~~tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        268 NLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             EEEEEECCCCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            58889998775 44554444556788999999866543 2  2356665544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.33  E-value=0.28  Score=29.30  Aligned_cols=48  Identities=17%  Similarity=0.277  Sum_probs=29.2

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL   59 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~   59 (69)
                      .|.+||+.++.. ..+....+.....+|+|++..++ +.  +++..+|.++.
T Consensus       229 ~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        229 AIYVQDLATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             EEEEEECCCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            588999977753 33444444455788999997554 32  33334554443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.31  E-value=0.11  Score=30.81  Aligned_cols=33  Identities=9%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             eCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCCC
Q 035275           27 MSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDL   59 (69)
Q Consensus        27 ~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~~   59 (69)
                      .+|+..|++++++.+...+.|+|. .|++|.+++
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei  194 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEI  194 (433)
T ss_pred             ccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence            357778899999999999999863 466665544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.14  Score=32.26  Aligned_cols=58  Identities=9%  Similarity=0.216  Sum_probs=41.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCe-EEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP-VIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .+|.+.++|.|.++-+. -..++.++-|...+. +++|.|+|..++.|-.+..+-+-|.+
T Consensus        34 LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   34 LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            46777788888888876 444777776776676 99999999999988433333333333

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.12  E-value=0.14  Score=33.19  Aligned_cols=50  Identities=30%  Similarity=0.389  Sum_probs=36.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCC-----CcEEEEcCCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-----SLMFVTGSSE   51 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~s~~~~   51 (69)
                      .+++||+.||+|.|-.+.+....++.. ...++..++++|+     ..++++|+..
T Consensus        84 ey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~a  138 (846)
T KOG2066|consen   84 EYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMA  138 (846)
T ss_pred             ceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcc
Confidence            378999999999998887776544443 3456788999887     3456666544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=95.05  E-value=0.13  Score=30.72  Aligned_cols=49  Identities=16%  Similarity=0.205  Sum_probs=31.4

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      .|.++|.+ +.....+..+...+...+|+|++..++..   +....+|++|..
T Consensus       177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~  228 (427)
T PRK02889        177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA  228 (427)
T ss_pred             EEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC
Confidence            56677763 43345555677778899999999876643   223456665543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.05  E-value=0.34  Score=28.96  Aligned_cols=55  Identities=13%  Similarity=0.178  Sum_probs=34.4

Q ss_pred             EEEeCCC--cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CC--cEEEEcCCC
Q 035275            4 ISGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SS--ELSFWIPDL   59 (69)
Q Consensus         4 ~s~~~d~--~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~--~~~~~~~~~   59 (69)
                      ++.+.+|  .|.+||+.++. ...+..+.+.....+|+|++..++.. +.  ...+|.++.
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl  323 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA  323 (433)
T ss_pred             EEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            3444455  58999997775 45555555555678899998766543 22  345665543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.99  E-value=0.073  Score=35.25  Aligned_cols=48  Identities=17%  Similarity=0.164  Sum_probs=40.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      ++++.|+..|.|+++++.+|........|...++.+.-+.++.+..+.
T Consensus      1114 ~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1114 NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred             ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeee
Confidence            468999999999999999998778888999999988888887765543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.96  E-value=0.11  Score=32.29  Aligned_cols=50  Identities=8%  Similarity=0.152  Sum_probs=38.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE   51 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~   51 (69)
                      +++.|+.+|.|++||-......+.+++-..+|..|..+.+|..++..+..
T Consensus       443 ~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  443 YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            68999999999999973333344568888889999999888776655443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=94.78  E-value=0.31  Score=32.21  Aligned_cols=56  Identities=16%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             EEEEeCCCcEEEE----ECCCCceEEEEeCCCCCCeEEEEcCCCcEEE--EcCCcEEEEcCCC
Q 035275            3 VISGSGDGSVYAW----SVRSGKEVASWMSFDTEPPVIKWTPGSLMFV--TGSSELSFWIPDL   59 (69)
Q Consensus         3 ~~s~~~d~~v~~w----d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~--s~~~~~~~~~~~~   59 (69)
                      ++.+..+|.|...    +..+.. .-....-+..|.+++|||++.+++  ++.+++.+..-+.
T Consensus        90 l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   90 LCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             EEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            5566778888877    433322 222234566789999999987665  4455555554333

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=94.74  E-value=0.13  Score=33.93  Aligned_cols=48  Identities=10%  Similarity=0.139  Sum_probs=39.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS   50 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~   50 (69)
                      +++.+|...|+|.+-|..+-+....+..|.+.+..  |.-+++.+++++.
T Consensus       188 r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~  235 (1118)
T KOG1275|consen  188 RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGY  235 (1118)
T ss_pred             cEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeec
Confidence            36788999999999999988888899999997655  5556778887644

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=94.72  E-value=0.2  Score=31.51  Aligned_cols=54  Identities=17%  Similarity=0.322  Sum_probs=41.5

Q ss_pred             EEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         5 s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .++....|+-.++..|+-+..+....+.+.++..++...++++|..  .+-+|.+.
T Consensus       150 ~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR  205 (703)
T KOG2321|consen  150 LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR  205 (703)
T ss_pred             EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence            3444457888899989877777777788999999999889998854  46677654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=94.72  E-value=0.083  Score=31.27  Aligned_cols=59  Identities=14%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             EEEEEeCCCcEEEEECCCCce----EEEEeCCCCCCeEEEEcC-CCcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKE----VASWMSFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~----~~~~~~~~~~v~~v~~~~-~~~~~~s~~~~~~~~~~~~~   60 (69)
                      .++.|..+|.|...|++.+..    ..+.-.|+..|++++.-. +...+.++|-+..|-+||.+
T Consensus       266 Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  266 LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            577889999999999987632    223346888888887654 44445555544444444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.67  E-value=0.21  Score=30.31  Aligned_cols=50  Identities=8%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLS   60 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~   60 (69)
                      ++.|.+||+.+++.+..+...  +|..|-|++++.+++-. +..+.+..++.+
T Consensus       125 ~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  125 SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence            347999999999877777544  37899999998877654 556888776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=94.66  E-value=0.35  Score=28.98  Aligned_cols=50  Identities=14%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      ..+.+|++.+++. ..+....+......|+|++..++..   +....+|.+|..
T Consensus       223 ~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        223 SALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             cEEEEEECCCCCe-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            4688889877652 3333333334568899999866632   334456665543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.27  E-value=0.66  Score=28.05  Aligned_cols=55  Identities=13%  Similarity=0.257  Sum_probs=33.5

Q ss_pred             EEEeCCCc--EEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEE-cC--CcEEEEcCCC
Q 035275            4 ISGSGDGS--VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-GS--SELSFWIPDL   59 (69)
Q Consensus         4 ~s~~~d~~--v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s-~~--~~~~~~~~~~   59 (69)
                      ++.+.++.  |.++|+.+++ ...+..+........|+|++..++. ++  ....+|.++.
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl  337 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL  337 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            34455564  7777887665 4455555555567889999876553 32  3456665554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.26  E-value=0.59  Score=27.24  Aligned_cols=30  Identities=20%  Similarity=0.220  Sum_probs=24.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDT   31 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~   31 (69)
                      .++.++.+|.|.++|..+++.+..+..+..
T Consensus       322 ~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       322 YLVVGDFEGYLHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence            567888999999999999988877765543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.08  E-value=0.86  Score=30.68  Aligned_cols=57  Identities=12%  Similarity=0.080  Sum_probs=34.3

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEe-C------------CCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWM-S------------FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~-~------------~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      +++-+.+++|.+||..++....... +            .-.....+++++++.++++...+-+|..++.
T Consensus       818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            4555667789999987765332221 1            1123568899999988877644434444443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.03  E-value=0.34  Score=28.62  Aligned_cols=33  Identities=6%  Similarity=0.258  Sum_probs=23.7

Q ss_pred             CCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCCCC
Q 035275           28 SFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLS   60 (69)
Q Consensus        28 ~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~~~   60 (69)
                      .|...+.+++++.+...+.++|. .|++|.+++.
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~  203 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEII  203 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeecccccc
Confidence            45666788889988888888853 5777765544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=93.96  E-value=0.75  Score=27.36  Aligned_cols=48  Identities=13%  Similarity=0.351  Sum_probs=28.9

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL   59 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~   59 (69)
                      .|.+|++.++.. ..+....+......|+|++..++ +.  ++...+|.+|.
T Consensus       224 ~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        224 RIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             EEEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            588889877753 33333334445688999987665 32  33345555544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.55  Score=28.46  Aligned_cols=60  Identities=10%  Similarity=0.127  Sum_probs=44.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~   62 (69)
                      ++..++-+.+|++.|+++.........+ ..+-+++|..+. ..+-.|+.+..++.+|.+..
T Consensus       208 Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  208 LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            4567788889999999988766556566 667788888654 56667888888888877643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.79  E-value=0.66  Score=26.85  Aligned_cols=60  Identities=20%  Similarity=0.326  Sum_probs=36.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++++.|...|.+++-+..+|...+.+..-...=...+..+++..+-.++.+.+++..|+.
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~  123 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK  123 (354)
T ss_pred             CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence            357788888999999999886555543222111123345566666666666666655554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.58  E-value=0.49  Score=26.53  Aligned_cols=29  Identities=17%  Similarity=0.260  Sum_probs=22.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFD   30 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~   30 (69)
                      +..++.+||.|+.|++..++.+.....|+
T Consensus       116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             eeEEeccCCceeeeccccCceeeeecccc
Confidence            45778889999999998777666666676

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.26  E-value=0.73  Score=31.16  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEE---EEcCCCcEEEEcCCcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI---KWTPGSLMFVTGSSELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v---~~~~~~~~~~s~~~~~~~~~   56 (69)
                      .++.|-.+|.|.+||...++.+..+..|..+...+   .+..+...+.++|.-..+|.
T Consensus       144 ~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~  201 (1206)
T KOG2079|consen  144 LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWK  201 (1206)
T ss_pred             eeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEE
Confidence            46677888999999999988877776555554443   34445556777777666774

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.15  E-value=0.29  Score=20.19  Aligned_cols=30  Identities=13%  Similarity=0.117  Sum_probs=18.0

Q ss_pred             CCCeEEEEcCCC---cEEEEcCCcEEEEcCCCC
Q 035275           31 TEPPVIKWTPGS---LMFVTGSSELSFWIPDLS   60 (69)
Q Consensus        31 ~~v~~v~~~~~~---~~~~s~~~~~~~~~~~~~   60 (69)
                      +.++++.|+|..   .+++-+....++-++|.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            357899999754   366655444444445554

It contains a characteristic DLL sequence motif.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.07  E-value=1.2  Score=26.98  Aligned_cols=49  Identities=8%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEE-c--CCcEEEEcCCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-G--SSELSFWIPDLS   60 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s-~--~~~~~~~~~~~~   60 (69)
                      .|.++|+.+++. ..+....+......|+|++..++. .  +....+|.+|..
T Consensus       243 ~L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        243 EIFVQDIYTQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             EEEEEECCCCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            588888877653 233322333346789999986653 2  344556665543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=92.85  E-value=0.16  Score=31.22  Aligned_cols=36  Identities=8%  Similarity=0.113  Sum_probs=28.9

Q ss_pred             EEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCC
Q 035275           24 ASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL   59 (69)
Q Consensus        24 ~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~   59 (69)
                      ..|..|.+.|..|.|+..+..++|++.+  +.+|.|-.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~  173 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVS  173 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhc
Confidence            4567899999999999999999999766  55666543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.29  E-value=0.51  Score=29.07  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVA   24 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~   24 (69)
                      ++++.+.|+.+++||+.++..+.
T Consensus       232 ~l~tl~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  232 FLFTLSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             EEEEEETTSEEEEEETTTTCEEE
T ss_pred             EEEEEeCCCeEEEEECCCCeEEE
Confidence            67899999999999999987633

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=92.29  E-value=0.62  Score=26.80  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             CCCCeEEEEcCCCcEEEEc--CCcEEEE
Q 035275           30 DTEPPVIKWTPGSLMFVTG--SSELSFW   55 (69)
Q Consensus        30 ~~~v~~v~~~~~~~~~~s~--~~~~~~~   55 (69)
                      ...|..|+.+|++..+++.  ++.+.+|
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW  256 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLW  256 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence            4567899999999999887  5556666

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=92.14  E-value=0.19  Score=34.12  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             CceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCcEEEEcCCCCCc
Q 035275           20 GKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus        20 ~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~~~~~~~~~~~~   62 (69)
                      |..+.++..|...+..++.++.. .+++|++.+..+-+|+..++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~ 1081 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL 1081 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhh
Confidence            45567788888888877777654 89999977755555555543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=92.09  E-value=1.5  Score=25.77  Aligned_cols=49  Identities=14%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC---cEEEEcCCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPDLS   60 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~---~~~~~~~~~~   60 (69)
                      .|.++|+.+++ ...+..+........|+|++..++.++.   ...++.++..
T Consensus       303 ~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       303 QIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             eEEEEECCCCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence            47777776655 3344434445567789999877665422   2456655543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.99  E-value=0.24  Score=31.67  Aligned_cols=52  Identities=15%  Similarity=0.325  Sum_probs=37.2

Q ss_pred             EEEEeCCCcEEEEECCCCce---E--EEE-eCCCCCCeEEEEcCCCcEEEEcCCcEEE
Q 035275            3 VISGSGDGSVYAWSVRSGKE---V--ASW-MSFDTEPPVIKWTPGSLMFVTGSSELSF   54 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~---~--~~~-~~~~~~v~~v~~~~~~~~~~s~~~~~~~   54 (69)
                      ++.|++.|.|.++-+..+.+   .  ... ..|..+|+++.|++++-.+.+||....+
T Consensus        91 vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv  148 (726)
T KOG3621|consen   91 VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKV  148 (726)
T ss_pred             hhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceE
Confidence            46677788899888765432   1  111 3467889999999999999999776443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=91.94  E-value=1.7  Score=25.93  Aligned_cols=54  Identities=13%  Similarity=0.186  Sum_probs=32.0

Q ss_pred             EEeCCC--cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-EcC--CcEEEEcCCC
Q 035275            5 SGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TGS--SELSFWIPDL   59 (69)
Q Consensus         5 s~~~d~--~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~~--~~~~~~~~~~   59 (69)
                      +.+.+|  .|.++|+.++. ...+..+.+......|+|++..++ +++  ....+|.++.
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~  318 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV  318 (430)
T ss_pred             EEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            444444  58888987765 444555555556678999987554 332  2345555443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=91.73  E-value=1.8  Score=25.99  Aligned_cols=61  Identities=11%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCc-----eEEEEeCCC------------CCCeEEEEcCCC---cEEEEc-CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK-----EVASWMSFD------------TEPPVIKWTPGS---LMFVTG-SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~-----~~~~~~~~~------------~~v~~v~~~~~~---~~~~s~-~~~~~~~~~~~   59 (69)
                      .+|++|..+|+|.++.-....     .......|.            .+|..+.|.+++   .+++++ +..+.+|....
T Consensus        38 e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e  117 (433)
T KOG1354|consen   38 ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE  117 (433)
T ss_pred             ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence            368999999999988754322     223344443            367788888764   345555 67799997554


Q ss_pred             CC
Q 035275           60 SK   61 (69)
Q Consensus        60 ~~   61 (69)
                      +.
T Consensus       118 r~  119 (433)
T KOG1354|consen  118 RG  119 (433)
T ss_pred             cc
Confidence            43

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=91.52  E-value=1.6  Score=27.38  Aligned_cols=47  Identities=13%  Similarity=0.066  Sum_probs=34.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      +++.+.....+-+.|+++++....-.+..+.|....|+|+..++|=+
T Consensus       415 ~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYa  461 (668)
T COG4946         415 KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYA  461 (668)
T ss_pred             EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEe
Confidence            45666666678888998887433335566778899999999888865

>smart00564 PQQ beta-propeller repeat

Probab=90.71  E-value=0.49  Score=17.53  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=17.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVAS   25 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~   25 (69)
                      .++.++.+|.+...|..+|+....
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            456677788888888888876544

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=90.54  E-value=2.2  Score=24.84  Aligned_cols=61  Identities=10%  Similarity=0.040  Sum_probs=36.9

Q ss_pred             EEEEEeCCCcEEEEECCCCc--eEE-EEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGK--EVA-SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL   62 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~--~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~   62 (69)
                      ++++.++...|.+|.++...  .+. ....-...-.+.+|+.....+|.+.++..+-+||++.+
T Consensus       172 ~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  172 WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence            45666666788899886542  122 22233344478899988888888755544444445443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=90.43  E-value=2.2  Score=25.59  Aligned_cols=44  Identities=14%  Similarity=0.089  Sum_probs=28.9

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      .+...+-+|.+|.+.+.. ...+.-....+..++|+|++.+.+-.
T Consensus       108 ~tseF~lriTVWSL~t~~-~~~~~~pK~~~kg~~f~~dg~f~ai~  151 (447)
T KOG4497|consen  108 LTSEFDLRITVWSLNTQK-GYLLPHPKTNVKGYAFHPDGQFCAIL  151 (447)
T ss_pred             eeecceeEEEEEEeccce-eEEecccccCceeEEECCCCceeeee
Confidence            344445588899987654 22333344556899999999877654

>PF01011 PQQ: PQQ enzyme repeat family

Probab=90.30  E-value=0.64  Score=18.19  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM   27 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~   27 (69)
                      .+..+..+|.+.-.|.++|+.++...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~   27 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQ   27 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeee
Confidence            45667899999999999999887764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=89.94  E-value=2.9  Score=25.14  Aligned_cols=53  Identities=17%  Similarity=0.471  Sum_probs=34.2

Q ss_pred             EEeCCCcEEEEECC--CCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcC
Q 035275            5 SGSGDGSVYAWSVR--SGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIP   57 (69)
Q Consensus         5 s~~~d~~v~~wd~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~   57 (69)
                      .|...|.|.+..+.  .-.++..+.+|.+.+.+..|.|....+.++.  ..+..|..
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI  226 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence            34444444443332  2345677889999999999998877777764  44666643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=89.78  E-value=0.67  Score=30.52  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=34.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS   42 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~   42 (69)
                      .++.|...|+|.++|+.++.....+..|++.|.++.|--..
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s  479 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS  479 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce
Confidence            47889999999999999888777788899999998886543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=89.47  E-value=3.2  Score=25.09  Aligned_cols=48  Identities=17%  Similarity=0.371  Sum_probs=29.1

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL   59 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~   59 (69)
                      .|.+||+.+++. ..+......+....|+|++..++ ++  .....+|.++.
T Consensus       352 ~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        352 QICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             EEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            688999987763 44433334456788999987655 32  22344554443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.38  E-value=1.2  Score=28.17  Aligned_cols=51  Identities=8%  Similarity=0.109  Sum_probs=37.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE   51 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~   51 (69)
                      .+++.++..|.|++||--.-+..+.+++-...|..+..+.+|.++.+.|.+
T Consensus       574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            378999999999999964334344567777778888888888776665543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.71  E-value=1.5  Score=28.88  Aligned_cols=57  Identities=21%  Similarity=0.357  Sum_probs=38.7

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEEcC-CCcEEEEc-CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTP-GSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~~~-~~~~~~s~-~~~~~~~~~~   58 (69)
                      -+++++-|..+..||+++.. ++..+..-...-..|+|+- +...+++. ..++++|...
T Consensus       129 Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  129 VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            36788999999999998754 4445543334446788884 45566665 5678888643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=87.95  E-value=1.7  Score=25.85  Aligned_cols=59  Identities=10%  Similarity=0.185  Sum_probs=38.1

Q ss_pred             EEEEeCCCcEEEEECCCCce---EE-----EE--------eCCCCCCeEEEEcCCCcEEEEcCC-cEEEEcCCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKE---VA-----SW--------MSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSK   61 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~---~~-----~~--------~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~~~~~~~   61 (69)
                      +.-.+..|.|++.|++....   .+     .+        .+-...|..++|++.+..+++-|- .+.+|..++.+
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k  312 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK  312 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence            44456678999999874321   00     11        122346778899999988887654 58888766553

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.29  E-value=4  Score=23.50  Aligned_cols=46  Identities=13%  Similarity=0.114  Sum_probs=33.6

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc-CCC-cEEEEc
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGS-LMFVTG   48 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~-~~~-~~~~s~   48 (69)
                      .+++...++|...|..+|+.+..+.-...++.+++|- |+. .+.+++
T Consensus       226 ~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  226 YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            3444455689999999999888888789999999996 433 344443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.11  E-value=0.4  Score=31.33  Aligned_cols=50  Identities=14%  Similarity=0.369  Sum_probs=34.0

Q ss_pred             CCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCC-cEEEEc--CCcEEEEcCC
Q 035275            9 DGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGS-LMFVTG--SSELSFWIPD   58 (69)
Q Consensus         9 d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~-~~~~s~--~~~~~~~~~~   58 (69)
                      ...|.+||.+.| .++..+.+|...++.+.|+... ..+-+.  +..+.+|.++
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            347999999766 4567788899989998887632 223333  4457776654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=86.85  E-value=2.4  Score=28.15  Aligned_cols=39  Identities=10%  Similarity=0.151  Sum_probs=30.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP   40 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~   40 (69)
                      .++++.-.|.|.+||...+-...-+..|..++..+.|-+
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~  119 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVP  119 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeee
Confidence            367788889999999987766666677888888888764

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.42  E-value=2.4  Score=20.19  Aligned_cols=41  Identities=7%  Similarity=0.144  Sum_probs=23.4

Q ss_pred             eCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            7 SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         7 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      ..+|++.-||..+++....+.+- .--+.|+.++++.+++.+
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEE
Confidence            34577888888777632222221 123789999998876654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=85.90  E-value=5.1  Score=23.38  Aligned_cols=56  Identities=18%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             EEEeCCCcEEEEECCC--Cce--EEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCC
Q 035275            4 ISGSGDGSVYAWSVRS--GKE--VASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDL   59 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~--~~~--~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~   59 (69)
                      ++.-.+..|.+++++.  +..  +..........+.+.++|++.+++.+   +..+.++..|.
T Consensus       261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            4444556799999843  332  22222222334789999999877765   34577776653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=85.54  E-value=0.12  Score=31.66  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=36.7

Q ss_pred             CEEEEEeCCCcEEEEECCC--C-ceEEEEeCCCCCCeEEEEcCCCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRS--G-KEVASWMSFDTEPPVIKWTPGSLMFVTGSS   50 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~--~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~   50 (69)
                      +++.+++-||.+++|.-..  + +.++....|.+.+..+..+-++..+.|.+.
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d   73 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED   73 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC
Confidence            4688999999999999743  2 123445678888888877878888888543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.38  E-value=3.6  Score=24.05  Aligned_cols=45  Identities=16%  Similarity=0.367  Sum_probs=30.3

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEE
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFW   55 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~   55 (69)
                      +...++|+.++. ...+......+....|+|++..++-. +.++.+.
T Consensus        23 ~~y~i~d~~~~~-~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~   68 (353)
T PF00930_consen   23 GDYYIYDIETGE-ITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLR   68 (353)
T ss_dssp             EEEEEEETTTTE-EEESS-EETTBSEEEE-SSSTEEEEEETTEEEEE
T ss_pred             eeEEEEecCCCc-eEECcCCccccccceeecCCCeeEEEecCceEEE
Confidence            568889998875 44443335677899999999877755 5555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=85.27  E-value=3.3  Score=20.66  Aligned_cols=35  Identities=17%  Similarity=0.083  Sum_probs=21.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT   39 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~   39 (69)
                      .|+.|++|..|++|+-+  ..+....... .+.++.-.
T Consensus        17 eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~   51 (111)
T PF14783_consen   17 ELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSL   51 (111)
T ss_pred             eEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEc
Confidence            48899999999998854  3344444443 34444433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=85.26  E-value=9.6  Score=26.01  Aligned_cols=55  Identities=9%  Similarity=0.099  Sum_probs=36.2

Q ss_pred             EEEEEeCCCcEEEEECCC-Cce-EEEE--eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEc
Q 035275            2 FVISGSGDGSVYAWSVRS-GKE-VASW--MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~-~~~-~~~~--~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      .++++++.|...+-|..+ +++ ....  ......+..+.+++.+..++-++.+  +..|.
T Consensus       280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            367788889999888321 121 2222  2333447889999999999988654  66664

>PRK01029 tolB translocation protein TolB; Provisional

Probab=84.93  E-value=6.6  Score=23.82  Aligned_cols=26  Identities=8%  Similarity=0.052  Sum_probs=16.8

Q ss_pred             EEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275           23 VASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus        23 ~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      ...+..+...+....|+|++..++..
T Consensus       319 ~~~lt~~~~~~~~p~wSPDG~~Laf~  344 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSPDGKKIAFC  344 (428)
T ss_pred             eEEeccCCCCccceeECCCCCEEEEE
Confidence            34444444555678899999876643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=84.89  E-value=11  Score=26.35  Aligned_cols=55  Identities=16%  Similarity=0.256  Sum_probs=34.2

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEE--EcCCcEEEEcCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFV--TGSSELSFWIPDL   59 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~--s~~~~~~~~~~~~   59 (69)
                      ++.+..+|.|.+-|..+..  ..+ .--...|.+++|+|++..++  ++...+.+...+.
T Consensus        83 i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f  140 (1265)
T KOG1920|consen   83 ICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF  140 (1265)
T ss_pred             EEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence            4556667888877665443  223 22345688999999987655  4555566554443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=84.41  E-value=11  Score=25.88  Aligned_cols=56  Identities=18%  Similarity=0.198  Sum_probs=31.9

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeC-------------CC--------CCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMS-------------FD--------TEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~-------------~~--------~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      +++-+.++.|.+||..++.......+             ..        ....++.+++++.++++...+  +.+|..+
T Consensus       755 YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~  833 (1057)
T PLN02919        755 YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA  833 (1057)
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence            34555567899999876542211100             00        112578888988877775444  5555543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=84.23  E-value=1.5  Score=15.95  Aligned_cols=20  Identities=10%  Similarity=0.134  Sum_probs=10.1

Q ss_pred             EEEEcCCCcEEEEcCCcEEE
Q 035275           35 VIKWTPGSLMFVTGSSELSF   54 (69)
Q Consensus        35 ~v~~~~~~~~~~s~~~~~~~   54 (69)
                      .++..+++.++++-..+.++
T Consensus         6 gvav~~~g~i~VaD~~n~rV   25 (28)
T PF01436_consen    6 GVAVDSDGNIYVADSGNHRV   25 (28)
T ss_dssp             EEEEETTSEEEEEECCCTEE
T ss_pred             EEEEeCCCCEEEEECCCCEE
Confidence            45555566555554444333

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=84.08  E-value=3.5  Score=26.54  Aligned_cols=40  Identities=23%  Similarity=0.401  Sum_probs=28.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTP   40 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~   40 (69)
                      ++++.|-.||+|.+.|+.++..+... ......|.++-|.+
T Consensus        75 kllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   75 KLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            46899999999999999888766552 33445566666654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.81  E-value=5.7  Score=22.18  Aligned_cols=45  Identities=7%  Similarity=0.101  Sum_probs=30.8

Q ss_pred             EEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            3 VISGSGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      ++.+...+.|.+|++...  +....+..- ++|..+.++..|..+++-
T Consensus        31 Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   31 LFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             EEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence            444445578999999732  234444333 778899999999888873

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=83.31  E-value=5.3  Score=21.46  Aligned_cols=27  Identities=33%  Similarity=0.501  Sum_probs=21.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMS   28 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~   28 (69)
                      .+++++.++.|..+|..+|+.+.....
T Consensus        38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~   64 (238)
T PF13360_consen   38 RVYVASGDGNLYALDAKTGKVLWRFDL   64 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEeec
Confidence            466677889999999999998777654

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=83.14  E-value=4.8  Score=21.60  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=15.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVA   24 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~   24 (69)
                      .++.++.++.+..||+.+++..+
T Consensus       214 ~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  214 TLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCEEe
Confidence            34555567778888877776554

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=82.54  E-value=7.9  Score=22.90  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=35.0

Q ss_pred             EEEEeCCCcEEEEECCCCceEE--EEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVA--SWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~--~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++...+|.+.+-+.......+  .+.+|...+=...|+.. .+++-+|+++..+..||++
T Consensus       136 i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R  196 (339)
T KOG0280|consen  136 IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR  196 (339)
T ss_pred             EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence            4566666777744443333333  56888877767777753 3567788666555555544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=81.89  E-value=9.2  Score=23.23  Aligned_cols=49  Identities=14%  Similarity=0.179  Sum_probs=29.7

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDL   59 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~   59 (69)
                      ..|.++|+.+++. ..+....+......|+|++..++ +.  +.+-.+|+.+.
T Consensus       213 ~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        213 PTLYKYNLYTGKK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CEEEEEECCCCcE-EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            4688888877753 33433445555678999986544 22  33456666553

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=81.75  E-value=8.1  Score=22.49  Aligned_cols=28  Identities=18%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275           33 PPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus        33 v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      =+.++|+|++.+++.+.....|.++|..
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~   73 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLM   73 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecc
Confidence            4689999999999988666555555543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.96  E-value=5.1  Score=26.97  Aligned_cols=56  Identities=14%  Similarity=0.177  Sum_probs=35.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      .+++++.||.|.+++....+..+.+... .+-..+.|...+...+++|.....|.-|
T Consensus        28 s~v~~~~d~si~lfn~~~r~qski~~~~-~p~~nlv~tnhgl~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   28 SFVLAHQDGSIILFNFIPRRQSKICEEA-KPKENLVFTNHGLVTATSDRRALAWKED   83 (1636)
T ss_pred             eEEEEecCCcEEEEeecccchhhhhhhc-CCccceeeeccceEEEeccchhheeecc
Confidence            4788999999999998665542222111 1223455666677777777766666433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=80.72  E-value=9.1  Score=22.41  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=19.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM   27 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~   27 (69)
                      .++.++.+|.+..+|..+|+.++...
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~   92 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVD   92 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeec
Confidence            45667777888888888888766553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.51
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.45
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.38
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.37
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.36
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.36
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.36
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.36
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.34
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.33
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.33
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.31
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.31
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.3
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.3
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.3
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.3
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.3
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.29
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.29
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.29
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.29
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.28
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.28
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.26
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.25
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.25
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.23
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.23
2pm7_B	297	Protein transport protein SEC13, protein transport	99.22
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.22
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.21
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.2
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.2
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.2
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.19
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.19
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.19
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.18
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.18
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.18
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.18
2pm7_B	297	Protein transport protein SEC13, protein transport	99.18
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.17
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.17
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.17
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.17
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.17
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.17
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.16
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.16
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.16
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.16
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.15
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.15
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.15
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.15
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.14
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.13
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.12
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.12
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.12
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.12
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.1
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.1
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.1
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.1
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.09
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.08
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.08
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.08
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.06
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.05
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.05
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.04
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.03
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.03
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.02
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.02
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.02
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.02
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.02
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.01
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.01
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.01
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.99
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.92
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.91
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.9
3jro_A	753	Fusion protein of protein transport protein SEC13	98.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.89
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.89
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.87
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.87
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.85
3jro_A	753	Fusion protein of protein transport protein SEC13	98.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.83
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.81
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.7
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.59
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.55
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.54
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.45
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.36
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.31
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.27
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.24
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.2
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.2
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.2
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.19
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.12
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.09
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.07
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.0
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.97
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.76
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.76
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.68
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.65
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.65
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.63
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.56
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.55
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.53
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.51
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.46
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.43
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.37
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.35
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.35
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.31
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.29
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.29
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.24
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.23
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.15
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.14
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.02
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.94
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.9
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	96.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.46
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.31
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.3
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.05
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	95.98
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.98
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.93
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.89
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	95.51
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	95.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.31
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.3
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.03
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.93
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.86
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	94.73
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.65
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	94.62
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	94.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	94.38
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	94.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	94.05
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.96
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	93.83
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	93.8
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	93.0
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	92.9
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	92.78
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	92.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	92.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	92.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	92.27
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	91.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	91.45
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	91.27
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	90.58
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	90.56
2qe8_A	343	Uncharacterized protein; structural genomics, join	90.02
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	90.01
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	89.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	89.47
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	88.51
2ece_A	462	462AA long hypothetical selenium-binding protein;	88.3
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	87.8
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	86.33
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	86.31
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	84.71
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	84.54
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	84.47
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.15
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	82.78
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	82.62
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.76
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	80.61
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	80.54
2qe8_A	343	Uncharacterized protein; structural genomics, join	80.51
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	80.25
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	80.15

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.51  E-value=7.4e-14  Score=78.17  Aligned_cols=57  Identities=11%  Similarity=0.071  Sum_probs=49.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGS--SELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~   57 (69)
                      ++|++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|++.+++|++  ..+++|..
T Consensus       282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            47899999999999999999887765 78999999999999999999884  45777753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.45  E-value=3.7e-13  Score=72.81  Aligned_cols=58  Identities=9%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      ++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+|++.+++|++.|..+.+||+.+
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            3455899999999999998999999999999999999999999886553333344443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.38  E-value=2.6e-12  Score=70.16  Aligned_cols=58  Identities=19%  Similarity=0.397  Sum_probs=50.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~   59 (69)
                      ++++|+.|+.|++||+.++..+..+.+|...|.++.|+|++..+++++  ..+++|....
T Consensus       200 ~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            689999999999999999988888999999999999999999998884  4577776543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.37  E-value=1.8e-12  Score=73.24  Aligned_cols=55  Identities=13%  Similarity=0.269  Sum_probs=45.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCe-EEEEcCCCcEEEEcCCc--EEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP-VIKWTPGSLMFVTGSSE--LSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~~s~~~~--~~~~~   56 (69)
                      ++++++.|++|++||+.+++.+..+.+|...+. +++|+|++.++++++.|  +++|.
T Consensus       297 ~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            478999999999999999998888988877654 68999999999998554  66664

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.36  E-value=1e-11  Score=68.28  Aligned_cols=59  Identities=17%  Similarity=0.398  Sum_probs=51.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~   59 (69)
                      +++++++.|+.|++||+.+++....+.+|...|.+++|+|++.++++++  ..+++|..+.
T Consensus        78 ~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred             CEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            3689999999999999999988888999999999999999999988874  4588886543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.36  E-value=2.6e-12  Score=70.17  Aligned_cols=58  Identities=19%  Similarity=0.334  Sum_probs=50.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+|++..+++++  ..+++|.++
T Consensus        68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~  127 (304)
T 2ynn_A           68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE  127 (304)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG
T ss_pred             CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC
Confidence            3689999999999999999998888999999999999999999988874  457777654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.36  E-value=6e-12  Score=70.11  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=49.5

Q ss_pred             CEEEEEeCCCc-EEEEECCCCceEEEEe-C-CCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGS-VYAWSVRSGKEVASWM-S-FDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~-v~~wd~~~~~~~~~~~-~-~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++|+.|++ |++||+.+++.+..+. + |.+.|.+++|+|++..+++++.  .+++|..+
T Consensus       208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            36899999998 9999999998888886 5 9999999999999999988754  47777543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.36  E-value=6.1e-12  Score=71.12  Aligned_cols=51  Identities=14%  Similarity=0.319  Sum_probs=44.7

Q ss_pred             EeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEc
Q 035275            6 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWI   56 (69)
Q Consensus         6 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~   56 (69)
                      |+.|+.|.+||+.++..+..+.+|.+.|.+++|+|++..++|++  +.+++|.
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            34789999999999998999999999999999999999999874  4577774

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.34  E-value=5.5e-12  Score=69.74  Aligned_cols=57  Identities=21%  Similarity=0.471  Sum_probs=50.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      ++++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|++..++++  |..+++|...
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            68999999999999999998888899999999999999999888887  4557887653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.33  E-value=8.2e-12  Score=68.85  Aligned_cols=58  Identities=19%  Similarity=0.381  Sum_probs=50.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      +++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++..+++++.+  +++|..+
T Consensus       177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~  236 (321)
T 3ow8_A          177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ  236 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC
Confidence            468999999999999999998888899999999999999999999988554  7777544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.33  E-value=3.7e-12  Score=71.05  Aligned_cols=58  Identities=19%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcC--CcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~--~~~~~~~~~~   59 (69)
                      ++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++++++  ..+++|..+.
T Consensus       229 ~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          229 VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             EEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             ceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            68899999999999999998888899999999999999987 5677774  4577775443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.31  E-value=1.6e-11  Score=71.06  Aligned_cols=59  Identities=15%  Similarity=0.308  Sum_probs=50.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~~   60 (69)
                      +++++|+.|+.|++||. +++.+..+.+|.+.|.+++|+|++.++++++  ..+++|..+.+
T Consensus        29 ~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~   89 (577)
T 2ymu_A           29 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ   89 (577)
T ss_dssp             SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred             CEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            46899999999999996 6777888999999999999999999999874  45888875443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.31  E-value=9.9e-12  Score=68.53  Aligned_cols=58  Identities=16%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++++.|+.|++||+.++.....+.+|...|.+++|+|++..+++++  ..+++|..+
T Consensus       219 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            3689999999999999998888888899999999999999999888874  457777654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.30  E-value=5.4e-12  Score=70.42  Aligned_cols=55  Identities=18%  Similarity=0.147  Sum_probs=45.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEc--CCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTG--SSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~--~~~~~~~~~   57 (69)
                      +|++|+.|+.|++||+.+++.+ ...+|.+.|.+++|+| ++..++++  |..+++|..
T Consensus       284 ~lasgs~D~~i~iwd~~~~~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          284 FLASISEDCTVAVLDADFSEVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             EEEEEeCCCEEEEEECCCCcEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            6899999999999999888754 4458999999999998 68888887  456777754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.30  E-value=1.8e-11  Score=69.27  Aligned_cols=57  Identities=21%  Similarity=0.434  Sum_probs=49.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      ++++|+.|+.|++||+.++..+..+.+|...|.++.|+|++..+++++.  .+++|...
T Consensus       310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            6899999999999999999888888999999999999999988888754  47777543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.30  E-value=1.3e-11  Score=68.76  Aligned_cols=57  Identities=21%  Similarity=0.462  Sum_probs=49.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      ++++|+.||.|++||++++..+..+.+|...|.+++|+|++..+++++  ..+++|...
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            689999999999999999988888899999999999999999999884  457777543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.30  E-value=1.4e-11  Score=68.76  Aligned_cols=58  Identities=16%  Similarity=0.352  Sum_probs=49.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~--~~~~~~~~~~   58 (69)
                      ++|++|+.|+.|++||+.+++.+..+.+|.+.|.++.|+|++ .+++++  |..+++|..+
T Consensus       140 ~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~  200 (344)
T 4gqb_B          140 TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR  200 (344)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc
Confidence            468999999999999999999888999999999999999987 466776  4557777544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.30  E-value=1.1e-11  Score=68.50  Aligned_cols=55  Identities=18%  Similarity=0.328  Sum_probs=48.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~   55 (69)
                      +++++|+.|+.|++||..++.....+.+|.+.|.+++|+|++..+++++.  .+++|
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            36899999999999999988888889999999999999999998888854  47776

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.29  E-value=4.6e-12  Score=71.68  Aligned_cols=57  Identities=14%  Similarity=0.298  Sum_probs=49.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      ++++|+.||.|++||+.++.....+.+|.+.|.+++|+|++..+++++  ..+++|..+
T Consensus       122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            689999999999999999988888999999999999999999998874  457777544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.29  E-value=1.8e-11  Score=68.15  Aligned_cols=55  Identities=22%  Similarity=0.533  Sum_probs=48.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~   55 (69)
                      +++++|+.|+.|++||+.++..+..+.+|...|.+++|+|++..+++++.+  +++|
T Consensus       297 ~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            368999999999999999988888889999999999999999999988554  6666

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.3e-11  Score=68.13  Aligned_cols=58  Identities=10%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceE-EEEeC-CCCCCeEEEEcCCCcEEEEcC-CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEV-ASWMS-FDTEPPVIKWTPGSLMFVTGS-SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~-~~~~~-~~~~v~~v~~~~~~~~~~s~~-~~~~~~~~~   58 (69)
                      +++++|+.||.|++||+.++... ..+.. |.+.|.+++|+|++..+++++ ..+++|..+
T Consensus       183 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~  243 (343)
T 3lrv_A          183 LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLR  243 (343)
T ss_dssp             CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETT
T ss_pred             CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcC
Confidence            36889999999999999988766 67777 999999999999999888874 456676543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.29  E-value=1.6e-11  Score=67.86  Aligned_cols=57  Identities=25%  Similarity=0.427  Sum_probs=50.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      ++++|+.|+.|++||+.++.....+.+|...|.+++|+|++..+++++  ..+++|..+
T Consensus       198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            689999999999999999988888899999999999999999998884  457777654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.28  E-value=1.4e-11  Score=69.09  Aligned_cols=57  Identities=26%  Similarity=0.441  Sum_probs=47.8

Q ss_pred             EEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      ++++|+.|+.|++||++. +..+..+.+|.+.|.+++|+|++..+++++.  .+++|...
T Consensus       220 ~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          220 MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence            689999999999999974 4556778899999999999999999999855  46776543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.28  E-value=2.3e-11  Score=68.39  Aligned_cols=57  Identities=19%  Similarity=0.404  Sum_probs=49.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      +++++|+.|+.|++||+.+++....+.+|...|.+++|+|++..+++++.  .+++|..
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~  194 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL  194 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC
Confidence            36899999999999999998888888999999999999999998888754  4666654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.26  E-value=3.5e-11  Score=66.13  Aligned_cols=57  Identities=16%  Similarity=0.368  Sum_probs=49.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      .+++++.|+.|++||+.+......+.+|...|.+++|+|++..+++++.+  +++|...
T Consensus       168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            58999999999999999888777889999999999999999999988554  6666543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.25  E-value=1e-10  Score=63.63  Aligned_cols=57  Identities=19%  Similarity=0.439  Sum_probs=50.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc----CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG----SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~----~~~~~~~~~~   58 (69)
                      ++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++..++++    |..+++|..|
T Consensus       251 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            68999999999999999998888899999999999999999988876    4558888754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.25  E-value=5.2e-11  Score=66.72  Aligned_cols=59  Identities=19%  Similarity=0.346  Sum_probs=49.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE----eCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW----MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~----~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~   59 (69)
                      +++++|+.||.|.+||..+++....+    .+|.+.|.+++|+|++..+++++.  .+++|.+..
T Consensus       311 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            36899999999999999888776666    679999999999999999999854  577876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.23  E-value=7.7e-11  Score=64.11  Aligned_cols=58  Identities=21%  Similarity=0.367  Sum_probs=49.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.||.|++|+..+++....+.+|...|.+++|+|++..+++++.  .+.+|..+
T Consensus        36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            36899999999999999988888888999999999999999999888744  46776544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.23  E-value=5.9e-11  Score=64.66  Aligned_cols=58  Identities=14%  Similarity=0.264  Sum_probs=46.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCc-----eEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK-----EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      ++|+||+.|+.|++||+.+..     ....+.+|...|.++.|+|++..+++++.+  +.+|...
T Consensus        52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~  116 (340)
T 4aow_A           52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT  116 (340)
T ss_dssp             TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence            378999999999999987643     345678999999999999999999988554  6666543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.22  E-value=2.8e-11  Score=65.88  Aligned_cols=58  Identities=16%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             EEEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCeEEEEcCCC---cEEEEc--CCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGS---LMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~----~~~~~~~~~~~v~~v~~~~~~---~~~~s~--~~~~~~~~~~~   59 (69)
                      +|++|+.|+.|++||+.++.    ....+.+|...|.+++|+|++   ..++++  |..+++|..+.
T Consensus       172 ~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            68999999999999997765    345678999999999999984   678877  45588886543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.22  E-value=8.5e-11  Score=64.35  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=49.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.||.|.+||+.+++....+.+|...|.+++|+|++..+++++.  .+.+|..+
T Consensus        45 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           45 DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             CEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             CEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            36899999999999999999888889999999999999999988888744  47776543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.21  E-value=9.2e-11  Score=63.88  Aligned_cols=56  Identities=14%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      ++++++.|+.|++||..+++....+.+|.+.|.+++|+|++..+++++.+  +++|..
T Consensus       187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~  244 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL  244 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence            47899999999999999998888889999999999999999999988554  666543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.20  E-value=2.3e-11  Score=68.56  Aligned_cols=58  Identities=10%  Similarity=0.266  Sum_probs=47.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcC--CcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~--~~~~~~~~~~   59 (69)
                      +|+|++.|++|++||+.++.....+..|...+.+++|+|++ .++++++  ..+++|....
T Consensus       158 ~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          158 VIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             EEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence            68999999999999998887777788888999999999986 4677774  4577775543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.20  E-value=6.6e-11  Score=70.44  Aligned_cols=57  Identities=19%  Similarity=0.461  Sum_probs=49.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~   57 (69)
                      +++++|+.||.|++||+.++.....+.+|.+.|.+++|+|++..+++++  ..+++|..
T Consensus       443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            3689999999999999999988888999999999999999998888874  45777754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.20  E-value=6.9e-11  Score=65.34  Aligned_cols=58  Identities=17%  Similarity=0.242  Sum_probs=46.8

Q ss_pred             CEEEEEeCCCcEEEEECCCC-------ceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSG-------KEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      ++|++|+.|+.|++||+.++       .....+.+|...|.+++|+|++.++++++.  .+++|..+
T Consensus        40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~  106 (343)
T 2xzm_R           40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR  106 (343)
T ss_dssp             CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETT
T ss_pred             CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            36899999999999998653       235567899999999999999999888854  46676543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.19  E-value=5.8e-11  Score=65.81  Aligned_cols=58  Identities=21%  Similarity=0.404  Sum_probs=47.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      ++|++|+.|+.+++|+...+.  ....+.+|...|.+++|+|++..+++++  ..+++|..+
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            368999999999999997764  3566789999999999999999999884  457777543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.19  E-value=5.3e-11  Score=66.63  Aligned_cols=58  Identities=19%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++++.|+.|.+||+.+++.+..+.+|.+.|.+++|+|++..+++++  ..+.+|..+
T Consensus       152 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          152 EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence            3689999999999999999888888899999999999999999888874  457777644

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.19  E-value=1.2e-10  Score=66.11  Aligned_cols=59  Identities=15%  Similarity=0.175  Sum_probs=46.5

Q ss_pred             EEEEEeCCCcEEEEECCCCce--EEEEeCCCCCCeEEEEcC-CCcEEEEcC--CcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTP-GSLMFVTGS--SELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~v~~~~-~~~~~~s~~--~~~~~~~~~~~   60 (69)
                      +|++|+.||.|.+||+.++..  ...+.+|.+.|.+++|+| ++..+++++  ..+++|..+..
T Consensus       134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred             EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence            589999999999999987653  334568999999999998 577888874  45888865443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.2e-10  Score=64.94  Aligned_cols=58  Identities=16%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEcCCc--EEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~~~~--~~~~~~~   58 (69)
                      +++++++.|+.|.+||+.+++.+..+..|...+.+++|+|++ .++++++.+  +++|..+
T Consensus       276 ~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          276 HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            368999999999999999998888899999999999999998 788888554  6666543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.18  E-value=9.3e-11  Score=65.95  Aligned_cols=57  Identities=23%  Similarity=0.396  Sum_probs=48.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC------CCcEEEEcCCc--EEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP------GSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~------~~~~~~s~~~~--~~~~~~   57 (69)
                      +++++|+.|+.|++||..++..+..+.+|...|.+++|++      ++..+++++.+  +++|.+
T Consensus       323 ~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          323 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence            3689999999999999999988888999999999999986      57788887544  666653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.18  E-value=5.3e-11  Score=68.92  Aligned_cols=54  Identities=19%  Similarity=0.384  Sum_probs=46.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~   55 (69)
                      ++|++++.||.|++||. +++.+..+.+|.+.|.+++|+|++..+++++.  .+++|
T Consensus       521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            36899999999999996 56777888999999999999999998888744  47776

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.18  E-value=8.1e-11  Score=64.46  Aligned_cols=57  Identities=11%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP-GSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~--~~~~~~~~~   58 (69)
                      ++++|+.||.|.+||+.+++.+..+.+|...|.+++|+| ++..+++++  ..+.+|..+
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            689999999999999999988888899999999999999 888888874  457777654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.18  E-value=7.8e-11  Score=64.12  Aligned_cols=59  Identities=10%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             CEEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCeEEEEcCC--CcEEEEc--CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWTPG--SLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~--~~~~~~~~~~~~v~~v~~~~~--~~~~~s~--~~~~~~~~~~~   59 (69)
                      ++|++|+.|+.|++||+..+  +.+..+.+|.+.|.+++|+|+  +..++++  |..+++|..+.
T Consensus        22 ~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B           22 KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            46899999999999999643  456778999999999999863  7788887  45577776543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.17  E-value=6.9e-11  Score=64.86  Aligned_cols=58  Identities=17%  Similarity=0.281  Sum_probs=46.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcC--CCcEEEEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTP--GSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~--~~~~~~s~--~~~~~~~~~~   58 (69)
                      ++|++|+.|+.|++||+.++.  .+..+.+|.+.|.+++|+|  ++..++++  |..+++|..+
T Consensus        26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            468999999999999998764  3456789999999999985  36777777  4557777654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.17  E-value=1.3e-10  Score=68.49  Aligned_cols=58  Identities=16%  Similarity=0.381  Sum_probs=48.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEe-------CCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWM-------SFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.|+.|++||..+++....+.       +|.+.|.+++|+|++..+++++.  .+++|..+
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            368999999999999999888776663       79999999999999999998854  46676543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.17  E-value=3.2e-11  Score=65.27  Aligned_cols=58  Identities=10%  Similarity=0.351  Sum_probs=47.1

Q ss_pred             EEEEEeCCCcEEEEECCCC----------------------------------------------ceEEEEeCCCCCCeE
Q 035275            2 FVISGSGDGSVYAWSVRSG----------------------------------------------KEVASWMSFDTEPPV   35 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~----------------------------------------------~~~~~~~~~~~~v~~   35 (69)
                      ++++++.||.|++||+..+                                              ..+..+.+|.+.|.+
T Consensus       232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  311 (351)
T 3f3f_A          232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS  311 (351)
T ss_dssp             EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred             EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence            6899999999999999764                                              344556789999999


Q ss_pred             EEEcCCCcEEEEcC--CcEEEEcCCC
Q 035275           36 IKWTPGSLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus        36 v~~~~~~~~~~s~~--~~~~~~~~~~   59 (69)
                      ++|+|++.++++++  ..+++|..+.
T Consensus       312 ~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          312 VSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             EEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEEcCCCCEEEEecCCCcEEEEecCc
Confidence            99999998888874  4577776553

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.17  E-value=9.5e-11  Score=69.12  Aligned_cols=56  Identities=16%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~   57 (69)
                      .+++++.|+.|++||..+++....+.+|.+.|.+++|+|++..++++  |..+++|..
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            48999999999999998887777889999999999999999999987  445777764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.17  E-value=1.2e-10  Score=65.19  Aligned_cols=58  Identities=16%  Similarity=0.231  Sum_probs=48.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.||.|.+||+.++.....+.+|.+.|.+++|+|++..+++++.  .+.+|..+
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            36899999999999999888766666899999999999999988888754  46666543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.17  E-value=1.5e-10  Score=64.99  Aligned_cols=57  Identities=16%  Similarity=0.344  Sum_probs=48.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE--eCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .+++++.|+.|.+||+.+++....+  ..|.+.|.+++|+|++..+++++.  .+++|..+
T Consensus       146 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  206 (402)
T 2aq5_A          146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR  206 (402)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred             EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence            6899999999999999999888888  789999999999999988888754  46666543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.16  E-value=3.2e-10  Score=63.29  Aligned_cols=57  Identities=21%  Similarity=0.398  Sum_probs=47.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcC--CcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS--SELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~--~~~~~~~~   57 (69)
                      +++++|+.|+.|++||..+++.+..+.+|...|.+++|+|++. .+++++  ..+++|..
T Consensus       152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~  211 (357)
T 4g56_B          152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT  211 (357)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence            3689999999999999999988888999999999999999764 566654  45666644

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.16  E-value=1.4e-10  Score=65.80  Aligned_cols=57  Identities=19%  Similarity=0.360  Sum_probs=48.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      +++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .++++  |..+.+|..+
T Consensus       133 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            368999999999999999999888899999999999999988 66665  5567887654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.16  E-value=2.8e-10  Score=62.84  Aligned_cols=59  Identities=15%  Similarity=0.051  Sum_probs=46.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~   59 (69)
                      +++++++.||.|.+||+.+++..... ..|...+.+++|+|++.++++++.  .+++|..+.
T Consensus       140 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          140 EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            36899999999999999988865555 345667999999999999998744  577775443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.16  E-value=9.4e-11  Score=64.33  Aligned_cols=57  Identities=23%  Similarity=0.404  Sum_probs=46.4

Q ss_pred             EEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCC--CcEEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPG--SLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~--~~~~~s~~--~~~~~~~~~   58 (69)
                      +|++|+.|++|++||+.++.  ....+.+|...|.+++|+|+  +.++++++  ..+++|..+
T Consensus        73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~  135 (316)
T 3bg1_A           73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT  135 (316)
T ss_dssp             CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence            58999999999999998763  45567889999999999997  67788874  457777544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.15  E-value=1.5e-10  Score=62.61  Aligned_cols=56  Identities=21%  Similarity=0.370  Sum_probs=43.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE--eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      .|++| .|++|++||+.+++.+..+  .+|...|.+++|+|++..+++++.+  +++|..+
T Consensus        38 ~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~   97 (318)
T 4ggc_A           38 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ   97 (318)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence            35554 5899999999999866555  4677889999999999999988554  6666544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.15  E-value=1.4e-10  Score=63.92  Aligned_cols=57  Identities=19%  Similarity=0.329  Sum_probs=41.6

Q ss_pred             CEEEEEeCCCcEEEEECCC-------CceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRS-------GKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~   57 (69)
                      +++++++.|+.|++||...       ......+.+|.+.|.+++|+|++..+++++  ..+++|..
T Consensus        71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            3689999999999999853       234556789999999999999999999884  45777765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.15  E-value=1.5e-10  Score=63.34  Aligned_cols=58  Identities=21%  Similarity=0.369  Sum_probs=47.3

Q ss_pred             EEEEEeCCCcEEEEECCC-CceE-EEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRS-GKEV-ASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~-~~~~-~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~   59 (69)
                      ++++|+.||.|++||+.+ +... ..+.+|.+.|.+++|+|++..+++++.  .+.+|..+.
T Consensus        56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence            689999999999999987 4444 567899999999999999988888754  466765443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.15  E-value=1.4e-10  Score=69.04  Aligned_cols=57  Identities=16%  Similarity=0.280  Sum_probs=49.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .+++++.|+.|++||+.+++....+.+|.+.|.+++|+|++..+++++.  .+++|...
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            5899999999999999988878888999999999999999999998844  57777543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.14  E-value=3.8e-10  Score=61.08  Aligned_cols=57  Identities=16%  Similarity=0.224  Sum_probs=46.4

Q ss_pred             CEEEEEeCCCcEEEEECCCC---------ceEEEEeCCCCCCeEEEEcCC--CcEEEEcCC--cEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSG---------KEVASWMSFDTEPPVIKWTPG--SLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~---------~~~~~~~~~~~~v~~v~~~~~--~~~~~s~~~--~~~~~~~   57 (69)
                      +++++++.||.|.+||+.++         +....+..|.+.+.+++|+|+  +..+++++.  .+.+|..
T Consensus        72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA  141 (351)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence            36899999999999999876         346677899999999999998  888888754  4666653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.13  E-value=1.5e-10  Score=64.98  Aligned_cols=58  Identities=19%  Similarity=0.471  Sum_probs=47.7

Q ss_pred             CEEEEEeCCCcEEEEECCCC-------ceEEEEeCCCCCCeEEEEcCCC-cEEEEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSG-------KEVASWMSFDTEPPVIKWTPGS-LMFVTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~-------~~~~~~~~~~~~v~~v~~~~~~-~~~~s~--~~~~~~~~~~   58 (69)
                      +++++|+.||.|.+||+.++       .....+.+|...|.+++|+|++ ..++++  |..+.+|..+
T Consensus        95 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  162 (402)
T 2aq5_A           95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG  162 (402)
T ss_dssp             TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence            36899999999999999887       4567788999999999999997 577776  4457777644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.12  E-value=2.4e-10  Score=61.57  Aligned_cols=56  Identities=16%  Similarity=0.037  Sum_probs=48.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~   56 (69)
                      +++++++.||.|++||+.++.....+..|.+.+.+++|+|++..+++++  ..+.+|.
T Consensus        30 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            3689999999999999988887778889999999999999999888874  4577774

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.12  E-value=1.1e-09  Score=60.39  Aligned_cols=57  Identities=16%  Similarity=0.455  Sum_probs=46.3

Q ss_pred             CEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSG----KEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~----~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~   57 (69)
                      ++|++|+.|+.|++||+...    +.+..+.+|...|.+++|+|++..+++++  ..+++|..
T Consensus       120 ~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~  182 (330)
T 2hes_X          120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD  182 (330)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            47899999999999999432    33556789999999999999999999884  45777753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.12  E-value=3.4e-10  Score=63.76  Aligned_cols=50  Identities=8%  Similarity=0.069  Sum_probs=44.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE   51 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~   51 (69)
                      ++++|+.||.|++||..++........|..+|.+++|+|++.++++++.+
T Consensus       331 ~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~  380 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG  380 (393)
T ss_dssp             EEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            46788999999999999988777778888999999999999999988554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.12  E-value=3.4e-10  Score=62.00  Aligned_cols=58  Identities=16%  Similarity=0.252  Sum_probs=48.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE---eCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW---MSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++++.||.|.+||+.+++....+   ..|...|.++.|+|++..+++++  ..+.+|..+
T Consensus       129 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (366)
T 3k26_A          129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN  191 (366)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred             CEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence            36899999999999999988877777   68999999999999998888874  457777654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.10  E-value=1.7e-10  Score=66.15  Aligned_cols=57  Identities=18%  Similarity=0.330  Sum_probs=47.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      .+++++.||.|++||++++.......+|...+.+++|+|++..+++++  +.+.+|..+
T Consensus       164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            689999999999999988865555667888999999999998888874  457777654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.10  E-value=4.4e-10  Score=69.92  Aligned_cols=59  Identities=12%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~   59 (69)
                      +++++|+.||.|.+||..++..+..+.+|.+.|.+++|+|++..+++++.  .+.+|..+.
T Consensus       628 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            36899999999999999999888889999999999999999999888744  577776543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.10  E-value=5.8e-10  Score=61.81  Aligned_cols=60  Identities=12%  Similarity=0.323  Sum_probs=47.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEE--E-EeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVA--S-WMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~--~-~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~   60 (69)
                      ++|++|+.|+.|++||..++....  . ..+|.+.|.+++|+|++..++++  |..+.+|..+..
T Consensus        29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~   93 (345)
T 3fm0_A           29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD   93 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred             CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence            368999999999999998775332  2 26899999999999999999987  456888865543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.10  E-value=4.3e-10  Score=63.57  Aligned_cols=57  Identities=23%  Similarity=0.372  Sum_probs=44.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE--eCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~   59 (69)
                      .|++| .|++|++||..+++....+  .+|...|.+++|+|++..+++|  |..+.+|..+.
T Consensus       118 ~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          118 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence            45555 4899999999999765544  5677889999999999999988  44577776543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.09  E-value=2.7e-10  Score=64.26  Aligned_cols=57  Identities=9%  Similarity=0.152  Sum_probs=48.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeC--CCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMS--FDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      ++++++.|+.|.+||+.+++.+..+..  |.+.|.+++|+|++..+++++.  .+.+|..+
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  244 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR  244 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            689999999999999999988888877  8899999999999998888744  47777544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.08  E-value=2.5e-10  Score=62.45  Aligned_cols=62  Identities=13%  Similarity=0.262  Sum_probs=45.3

Q ss_pred             EEEEEeCCCcEEEEECCCC-------------------ceEEEEeCCCCCCeEEEEcCCCcEEE-EcCCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSG-------------------KEVASWMSFDTEPPVIKWTPGSLMFV-TGSSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~-------------------~~~~~~~~~~~~v~~v~~~~~~~~~~-s~~~~~~~~~~~~~~   61 (69)
                      ++++++.||.|.+||+..+                   ..+..+.+|.+.|.+++|+|++..++ +++.+..+.+|++.+
T Consensus       274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            6899999999999998753                   23556788999999999999988776 665444444444544


Q ss_pred             cC
Q 035275           62 LG   63 (69)
Q Consensus        62 ~~   63 (69)
                      ++
T Consensus       354 ~~  355 (357)
T 3i2n_A          354 LN  355 (357)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.08  E-value=9e-10  Score=59.74  Aligned_cols=57  Identities=16%  Similarity=0.301  Sum_probs=48.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      +++++++.||.|.+||+.+++....+..|.+.+.++.|+|++..+++++.+  +.+|..
T Consensus       154 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  212 (337)
T 1gxr_A          154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL  212 (337)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence            368899999999999999988888888999999999999999888887544  666544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.08  E-value=5.3e-10  Score=63.49  Aligned_cols=58  Identities=17%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++++.|+.|.+||+.+++.+..+.+|...+.++.|+|++..+++++  ..+.+|..+
T Consensus       281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  340 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            3689999999999999999988888899999999999999998888874  457777654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.06  E-value=2.9e-10  Score=66.71  Aligned_cols=56  Identities=23%  Similarity=0.159  Sum_probs=47.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      .+++++.|+.|++||++++..+..+.+|.+.|.+++|+|++..+++++.+  +++|..
T Consensus       369 ~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            57889999999999999887767788899999999999999988888555  555543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.06  E-value=3.4e-10  Score=69.64  Aligned_cols=56  Identities=7%  Similarity=-0.012  Sum_probs=45.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCc---------------------------------------------eEEEEeCCCCCCeE
Q 035275            1 MFVISGSGDGSVYAWSVRSGK---------------------------------------------EVASWMSFDTEPPV   35 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~---------------------------------------------~~~~~~~~~~~v~~   35 (69)
                      ++|++|+.||+|++|++.+++                                             .+..+.+|.+.|.+
T Consensus       501 ~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~s  580 (902)
T 2oaj_A          501 LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSA  580 (902)
T ss_dssp             TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEE
T ss_pred             CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEE
Confidence            478999999999999997652                                             24556789999999


Q ss_pred             EEEcCCCcEEEEcCCc--EEEEcC
Q 035275           36 IKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus        36 v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      ++|+|++ ++++++.+  +++|..
T Consensus       581 vafSpdG-~lAsgs~D~tv~lwd~  603 (902)
T 2oaj_A          581 INNSNIG-FVGIAYAAGSLMLIDR  603 (902)
T ss_dssp             EEECBTS-EEEEEETTSEEEEEET
T ss_pred             EEecCCc-EEEEEeCCCcEEEEEC
Confidence            9999999 99988555  666654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.06  E-value=2.8e-09  Score=57.39  Aligned_cols=60  Identities=13%  Similarity=0.117  Sum_probs=50.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~~   61 (69)
                      .+++++.||.|.+||+.+++....+..|...+.++.|+|++.+++.+ +..+.+|..+...
T Consensus       238 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          238 DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred             CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence            47899999999999999998888889999999999999998865544 5568888766543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.05  E-value=5e-10  Score=64.95  Aligned_cols=59  Identities=17%  Similarity=0.336  Sum_probs=50.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeC-CCCCCeEEEEcC----------CCcEEEEcC--CcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTP----------GSLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~-~~~~v~~v~~~~----------~~~~~~s~~--~~~~~~~~~~   59 (69)
                      +++++++.||.|.+||+.+++.+..+.+ |...|.+++|+|          ++.++++++  ..+++|..+.
T Consensus       501 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  572 (615)
T 1pgu_A          501 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  572 (615)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             CEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence            4789999999999999999987777776 999999999999          899999884  4577776543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.05  E-value=9.7e-10  Score=63.76  Aligned_cols=57  Identities=19%  Similarity=0.315  Sum_probs=48.2

Q ss_pred             CEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      +++++++.||.|++||+.++ ..+..+.+|.+.|.+++|+|++. ++++  |..+++|..+
T Consensus       554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence            36899999999999999887 66777889999999999999998 7777  4457777654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.04  E-value=9.8e-10  Score=60.40  Aligned_cols=59  Identities=20%  Similarity=0.370  Sum_probs=47.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCC--CcEEEEcC--CcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPG--SLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~--~~~~~s~~--~~~~~~~~~~   59 (69)
                      +++++++.||.|.+||+.++.  ....+..|...+.+++|+|+  +..+++++  ..+.+|..+.
T Consensus        70 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  134 (379)
T 3jrp_A           70 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  134 (379)
T ss_dssp             SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred             CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence            368999999999999998886  55667889999999999998  88888774  4577776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.04  E-value=1.5e-09  Score=59.38  Aligned_cols=58  Identities=19%  Similarity=0.273  Sum_probs=47.8

Q ss_pred             CEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.||.|.+||+.+ ......+..|...+.+++|+|++..+++++.  .+.+|..+
T Consensus       188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            3688999999999999988 5667778899999999999999998888754  46666543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.04  E-value=9.1e-10  Score=61.17  Aligned_cols=57  Identities=11%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEe------CC---------------CCCCeEEEEcCCC----------cEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWM------SF---------------DTEPPVIKWTPGS----------LMFVTGS   49 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~------~~---------------~~~v~~v~~~~~~----------~~~~s~~   49 (69)
                      +++++++.||.|.+||+.+++.+..+.      .|               ...|.+++|+|++          ..+++++
T Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~  383 (397)
T 1sq9_A          304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC  383 (397)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence            368999999999999999998888887      77               8999999999997          6777774


Q ss_pred             --CcEEEEcC
Q 035275           50 --SELSFWIP   57 (69)
Q Consensus        50 --~~~~~~~~   57 (69)
                        ..+.+|..
T Consensus       384 ~dg~i~iw~~  393 (397)
T 1sq9_A          384 LDRSIRWFRE  393 (397)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCcEEEEEc
Confidence              45666653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.04  E-value=5.5e-10  Score=61.93  Aligned_cols=57  Identities=14%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~   59 (69)
                      ++.++.++.|.+||+.++..+..+.+|.+.|.+++|+|++..+++++  ..+.+|..+.
T Consensus       307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence            56667889999999999998889999999999999999999888874  4577776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.03  E-value=7.9e-10  Score=66.17  Aligned_cols=58  Identities=19%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.||.|.+||+.++.....+.+|.++|.++.|+|++..+++++.  .+.+|.++
T Consensus        26 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A           26 PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            36899999999999999999888889999999999999999998888744  46676654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.03  E-value=6.2e-10  Score=65.36  Aligned_cols=59  Identities=14%  Similarity=0.080  Sum_probs=44.8

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEE--EEcCCC-cEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVI--KWTPGS-LMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v--~~~~~~-~~~~s~~~~~~~~~~~~~   60 (69)
                      .|++|+.||+|.+||+.++. +...+.+|.+.|.++  .|+|++ .+++|++.+..+.+||++
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~  341 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK  341 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred             eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence            58999999999999998763 345678999999999  567877 788888555444444443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.02  E-value=6.1e-11  Score=65.69  Aligned_cols=59  Identities=15%  Similarity=0.216  Sum_probs=45.9

Q ss_pred             CEEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~   59 (69)
                      +++++++.|+.|.+||+.++  .....+.+|.+.|.+++|+|++..+++++.  .+++|..+.
T Consensus        24 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C           24 TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            36889999999999999887  455667899999999999999988888754  566665443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.02  E-value=4.8e-10  Score=61.69  Aligned_cols=58  Identities=16%  Similarity=0.247  Sum_probs=48.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++++.|+.|.+||..+++  ....+.+|...|.+++|+|++..+++++  ..+.+|..+
T Consensus        21 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C           21 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            368899999999999998886  6777889999999999999999888874  457777543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.02  E-value=1.4e-09  Score=65.07  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=50.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~   59 (69)
                      +++++++.||.|.+||+.+++....+.+|.+.|.+++|+|++..+++++.  .+.+|.++.
T Consensus        68 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~  128 (814)
T 3mkq_A           68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (814)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence            36899999999999999999888889999999999999999988888744  577776543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.5e-09  Score=60.59  Aligned_cols=59  Identities=14%  Similarity=0.284  Sum_probs=46.9

Q ss_pred             EEEEEeCCCcEEEEECCC----CceEEEEeCCCCCCeEEEEcCC-CcEEEEcCCcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRS----GKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~----~~~~~~~~~~~~~v~~v~~~~~-~~~~~s~~~~~~~~~~~~~   60 (69)
                      ++++++.||.|.+||+.+    ......+.+|.+.|.+++|+|+ +..+++++.+..+.+||..
T Consensus        81 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            689999999999999987    3456778899999999999998 7888888655444444444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.02  E-value=2.9e-09  Score=58.25  Aligned_cols=56  Identities=27%  Similarity=0.481  Sum_probs=45.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEE--cCCCcEEEEcCCc--EEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW--TPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~--~~~~~~~~s~~~~--~~~~~~   57 (69)
                      +++++++.||.|.+||+.++.. ..+..|...|.++.|  +|++..+++++.+  +++|..
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             CEEEEEcCCCcEEEEEcCCCCc-eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            3689999999999999988764 446779999999999  8888888887544  666544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.01  E-value=2.8e-10  Score=63.01  Aligned_cols=59  Identities=17%  Similarity=0.371  Sum_probs=42.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~   59 (69)
                      +++++++.|+.|++||+.++.   ....+..|...|.+++|+|++..+++++  ..+.+|..+.
T Consensus        68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  131 (377)
T 3dwl_C           68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ  131 (377)
T ss_dssp             CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--
T ss_pred             CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC
Confidence            368999999999999998876   5666788999999999999988888774  4566665543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.01  E-value=1.8e-09  Score=60.06  Aligned_cols=57  Identities=14%  Similarity=0.291  Sum_probs=46.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.|+.|.+||+ ++..+..+..|.+.|.+++|+|++. ++++++.  .+.+|..+
T Consensus       176 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          176 QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred             CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence            36899999999999999 5666788899999999999999987 7887754  46666543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.01  E-value=2.9e-09  Score=60.36  Aligned_cols=45  Identities=11%  Similarity=0.242  Sum_probs=37.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCC---CCCeEEEEcCCCcEEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFD---TEPPVIKWTPGSLMFV   46 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~~   46 (69)
                      +++|++.|++|++||+.+++.+..+.+|.   ..+.+++|+|++..++
T Consensus       195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv  242 (356)
T 2w18_A          195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI  242 (356)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred             eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence            58999999999999999999888887643   3567789999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.00  E-value=8.3e-10  Score=61.34  Aligned_cols=57  Identities=11%  Similarity=0.233  Sum_probs=48.3

Q ss_pred             CEEEEEeCC---CcEEEEECCCCceEEEEeC-------------CCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            1 MFVISGSGD---GSVYAWSVRSGKEVASWMS-------------FDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d---~~v~~wd~~~~~~~~~~~~-------------~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      +++++++.|   +.|.+||+.+++.+..+..             |...|.++.|+|++..+++++.+  +.+|..
T Consensus       246 ~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          246 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            368899999   9999999999888888887             99999999999999998888544  666654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.00  E-value=4e-10  Score=61.97  Aligned_cols=59  Identities=12%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             CEEEEEeCCCcEEEEECC--CCceEEEEeCCCCCCeEEEEcCC--CcEEEEcC--CcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVR--SGKEVASWMSFDTEPPVIKWTPG--SLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~--~~~~~~~~~~~~~~v~~v~~~~~--~~~~~s~~--~~~~~~~~~~   59 (69)
                      +++++++.||.|.+||+.  +......+.+|.+.|.+++|+|+  +..+++++  ..+.+|..+.
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A           24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred             CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence            368999999999999997  34455677899999999999876  78888874  4577775443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.00  E-value=8.7e-10  Score=61.43  Aligned_cols=53  Identities=11%  Similarity=0.050  Sum_probs=41.9

Q ss_pred             EeCCCcEEEEECCCCc---------------e-EEEEeCCCCCCeEEEEcCCCcEEEEcC--Cc-EEEEcCC
Q 035275            6 GSGDGSVYAWSVRSGK---------------E-VASWMSFDTEPPVIKWTPGSLMFVTGS--SE-LSFWIPD   58 (69)
Q Consensus         6 ~~~d~~v~~wd~~~~~---------------~-~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~-~~~~~~~   58 (69)
                      |+.||.|.+||+.++.               + ...+.+|.+.|.+++|+|++..+++++  .. +++|...
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            6889999999998754               1 566789999999999999999999884  44 6676544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.99  E-value=2.4e-09  Score=60.15  Aligned_cols=58  Identities=19%  Similarity=0.405  Sum_probs=47.8

Q ss_pred             CEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +.+++++.||.|.+||+.. +.....+.+|.+.|.++.|+|++..+++++  ..+.+|...
T Consensus       187 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  247 (401)
T 4aez_A          187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR  247 (401)
T ss_dssp             TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence            3689999999999999984 455677889999999999999999888874  457777544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.97  E-value=2.6e-09  Score=59.42  Aligned_cols=56  Identities=18%  Similarity=0.336  Sum_probs=44.6

Q ss_pred             EEEEEeCCCcEEEEECCC----CceEEEEeCCCCCCeEEEEcC-CCcEEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRS----GKEVASWMSFDTEPPVIKWTP-GSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~----~~~~~~~~~~~~~v~~v~~~~-~~~~~~s~~--~~~~~~~~~   58 (69)
                      ++++++.|+.|++||+.+    +..+..+ +|...+.+++|+| ++..+++++  ..+.+|..+
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            689999999999999987    4434444 7999999999999 998888875  456776544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.97  E-value=1.6e-09  Score=61.71  Aligned_cols=57  Identities=11%  Similarity=0.095  Sum_probs=47.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEE-EeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~   59 (69)
                      ++++++.|+.|++||+.++..+.. +.+|.+.|.+++|+ ++..+++++.  .+++|..+.
T Consensus       212 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          212 FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred             EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence            689999999999999998877766 56899999999999 9988888754  466665443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.95  E-value=8.5e-09  Score=61.58  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=47.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCce-------EEEE----eCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCCCCc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKE-------VASW----MSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDLSKL   62 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~-------~~~~----~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~~~~   62 (69)
                      +++++|+.||+|++||+.++..       +..+    .+|...|.+++|+|++ +++++ |..+++|..+.+..
T Consensus       142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS
T ss_pred             CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc
Confidence            4789999999999999988752       4555    6778899999999999 44443 66788888766553

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.95  E-value=3.3e-09  Score=59.72  Aligned_cols=58  Identities=10%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCce----EEEEeCCCC------------CCeEEEEcCCCcEEEEcCC-cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKE----VASWMSFDT------------EPPVIKWTPGSLMFVTGSS-ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~----~~~~~~~~~------------~v~~v~~~~~~~~~~s~~~-~~~~~~~~   58 (69)
                      +++++|+.||.|++||++++..    ...+..|..            .|.+++|+|++..+++++. .+.+|..+
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~  314 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLN  314 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETT
T ss_pred             cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCC
Confidence            3689999999999999988775    567777775            8999999999998888744 46666543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.94  E-value=2.5e-09  Score=60.22  Aligned_cols=58  Identities=16%  Similarity=0.402  Sum_probs=45.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCc-----------eEEEEeCCC------------CCCeEEEEcCCC--cEEEEc--CCcEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGK-----------EVASWMSFD------------TEPPVIKWTPGS--LMFVTG--SSELS   53 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~-----------~~~~~~~~~------------~~v~~v~~~~~~--~~~~s~--~~~~~   53 (69)
                      ++|++|+.||.|.+||+.++.           ....+.+|.            +.|.+++|+|++  ..++++  |..++
T Consensus        41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~  120 (447)
T 3dw8_B           41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK  120 (447)
T ss_dssp             SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE
T ss_pred             CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE
Confidence            378999999999999998765           366778998            889999999987  566665  55677


Q ss_pred             EEcCC
Q 035275           54 FWIPD   58 (69)
Q Consensus        54 ~~~~~   58 (69)
                      +|..+
T Consensus       121 iw~~~  125 (447)
T 3dw8_B          121 LWKIS  125 (447)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            77654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.94  E-value=1.8e-09  Score=60.93  Aligned_cols=60  Identities=22%  Similarity=0.324  Sum_probs=46.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEe-CCCCCCeEEEEcC----CCcEEEEcCCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTP----GSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~v~~~~----~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++++|+.||.|++||++++..+..+. .|...|.++.++|    ++..+++++.+..+.+||.+
T Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          227 CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            368999999999999999988777775 7888899996665    56688888766444444443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.94  E-value=3.6e-09  Score=58.62  Aligned_cols=57  Identities=19%  Similarity=0.327  Sum_probs=48.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~--~~~~~~~~~~   58 (69)
                      ++++++.|+.|.+||+.++.....+..|.+.|.+++|+|++. +++++  +..+.+|..+
T Consensus       158 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~  217 (408)
T 4a11_B          158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR  217 (408)
T ss_dssp             EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECC
Confidence            689999999999999998888888899999999999999987 57666  4457777543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.94  E-value=8.6e-09  Score=58.47  Aligned_cols=59  Identities=25%  Similarity=0.320  Sum_probs=47.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE-----eCCCCCCeEEEEcCCCcEEEEcCCc------EEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW-----MSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~~~s~~~~------~~~~~~~~   59 (69)
                      +++++|+.||.|++||+.+++.+..+     ..|.+.|.+++|+|++..+++++.+      +.+|.++.
T Consensus       373 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            36899999999999999999877766     4678889999999999998887432      55665543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.93  E-value=1.1e-08  Score=55.85  Aligned_cols=61  Identities=10%  Similarity=0.089  Sum_probs=48.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCeEEEEcCCCc-EEEEcC--CcEEEEcC-CCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSL-MFVTGS--SELSFWIP-DLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~~-~~~s~~--~~~~~~~~-~~~~   61 (69)
                      +++++++.|+.|.+|++.++.   .......|...|.+++|+|++. .+++++  ..+.+|.. +...
T Consensus        24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~   91 (342)
T 1yfq_A           24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence            368999999999999998766   3455568999999999999998 888774  45777765 4443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.93  E-value=4.7e-09  Score=57.71  Aligned_cols=57  Identities=12%  Similarity=-0.056  Sum_probs=46.3

Q ss_pred             CEEEEEeCCCcEEEEECC------------------CCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVR------------------SGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~------------------~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      +++++++.||.|.+||+.                  .+.....+..|.+.+.++.|+|++..+++++.  .+.+|..
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            368999999999999953                  56667777899999999999999988888754  4666654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.93  E-value=3.7e-09  Score=58.79  Aligned_cols=57  Identities=19%  Similarity=0.145  Sum_probs=48.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .+++++.|+.|.+||+.++..+..+..|...+.++.|+|++..+++++.  .+.+|..+
T Consensus       302 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          302 KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            5789999999999999999888888899999999999999998888744  57776543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.93  E-value=6.2e-09  Score=57.87  Aligned_cols=57  Identities=12%  Similarity=0.304  Sum_probs=47.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++++.||.|.+|| .++.....+..|...|.++.|+|++..+++++  ..+.+|..+
T Consensus       121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            3689999999999999 56777788899999999999999998888774  457777654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.92  E-value=5.9e-09  Score=59.22  Aligned_cols=57  Identities=21%  Similarity=0.357  Sum_probs=45.6

Q ss_pred             EEEEEeCCCcEEEEECCCC---ceEEEEeCCCCCCeEEEEcCCCc-EEEEcC--CcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSG---KEVASWMSFDTEPPVIKWTPGSL-MFVTGS--SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~---~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~--~~~~~~~~~   58 (69)
                      .+++++.||.|.+||++++   .....+..|...+.+++|+|++. ++++++  +.+.+|..+
T Consensus       246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~  308 (430)
T 2xyi_A          246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR  308 (430)
T ss_dssp             EEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence            5889999999999999876   45566778999999999999875 677764  456676544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.92  E-value=3.5e-09  Score=57.73  Aligned_cols=58  Identities=17%  Similarity=0.129  Sum_probs=46.1

Q ss_pred             CEEEEEeCCCcEEEEECCCC------ceEEEEeCCCC---------CCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSG------KEVASWMSFDT---------EPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~------~~~~~~~~~~~---------~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++++.||.|.+|+.+..      .....+..|..         .|.+++|+|++..+++++.  .+.+|..+
T Consensus       207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence            36899999999999999876      55667777754         8999999999988888744  57777654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.91  E-value=5e-09  Score=59.40  Aligned_cols=57  Identities=14%  Similarity=0.282  Sum_probs=46.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~   59 (69)
                      +++++|+.||.|.+||..+++....+.+|.+.|.+++|  ++..++++  |+.+.+|..+.
T Consensus       144 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            36899999999999999999888888999999999988  45567766  45677776543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.91  E-value=6e-09  Score=64.95  Aligned_cols=56  Identities=14%  Similarity=0.318  Sum_probs=48.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      .+++|+.|+.|.+||+.++.....+.+|.+.|.++.|+|++..+++++.  .+.+|..
T Consensus       715 ~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~  772 (1249)
T 3sfz_A          715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV  772 (1249)
T ss_dssp             EEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred             EEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence            5789999999999999999888888999999999999999998888754  4666653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.91  E-value=7.9e-09  Score=56.01  Aligned_cols=58  Identities=14%  Similarity=0.222  Sum_probs=46.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++++.|+.|.+||+.++.  ....+..|...+.++.|+|++..+++++  ..+.+|..+
T Consensus       110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A          110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            368899999999999998876  4556788999999999999998888774  457777544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.90  E-value=1.5e-08  Score=56.92  Aligned_cols=58  Identities=22%  Similarity=0.487  Sum_probs=46.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEc----CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTG----SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~s~----~~~~~~~~~~   58 (69)
                      +++++++.|+.|++||+.++.....+..|...+.+++|+|++ .+++++    +..+.+|..+
T Consensus       230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred             CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence            368999999999999999988888888999999999999965 566664    3346666543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.90  E-value=2e-09  Score=58.87  Aligned_cols=58  Identities=22%  Similarity=0.365  Sum_probs=46.1

Q ss_pred             EEEEEeCCCcEEEEECCCCc-eEEEEeCCCCCCeEEEE------cCCCcEEEEcCC--cEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKW------TPGSLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~v~~------~~~~~~~~s~~~--~~~~~~~~~   59 (69)
                      ++++++.||.|.+||+.++. ....+.+|...|.++.|      +|++..+++++.  .+.+|..+.
T Consensus        82 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~  148 (357)
T 3i2n_A           82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ  148 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred             eEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence            58999999999999998887 67788899999999965      577888888744  577765443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.89  E-value=7e-09  Score=62.68  Aligned_cols=59  Identities=22%  Similarity=0.380  Sum_probs=48.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCC--CcEEEEcCC--cEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPG--SLMFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~--~~~~~s~~~--~~~~~~~~~   59 (69)
                      +++++|+.||.|++||+.++.  ....+.+|...|.+++|+|+  +..+++++.  .+.+|..+.
T Consensus        68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence            368999999999999998876  45667889999999999998  888888744  577776543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.89  E-value=5.2e-09  Score=64.53  Aligned_cols=57  Identities=14%  Similarity=0.154  Sum_probs=47.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~   59 (69)
                      +|++++.|+.|++||+.+++.+..+. |.+.|.++.|+|++..+++++  ..+++|..+.
T Consensus        71 ~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~  129 (902)
T 2oaj_A           71 YLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR  129 (902)
T ss_dssp             EEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            68999999999999999888776665 668899999999999988874  4577776543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.89  E-value=3.6e-08  Score=56.01  Aligned_cols=65  Identities=14%  Similarity=0.007  Sum_probs=46.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEe--CCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCCCcCcc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKLGAY   65 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~   65 (69)
                      ++|++++.||.|++||+.++.......  .+...+.+++|+|++.++++++.  .+.+|..+...+..+
T Consensus       178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~  246 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNL  246 (435)
T ss_dssp             TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCS
T ss_pred             CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEE
Confidence            368999999999999997664332232  33445678999999999998854  577776554444433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.87  E-value=2.1e-08  Score=56.15  Aligned_cols=51  Identities=8%  Similarity=-0.087  Sum_probs=40.6

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC-cEEEE
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFW   55 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~-~~~~~   55 (69)
                      ++++.|+.|++||+.++.....+. |.+.|.+++|+|++..+++++. .+.+|
T Consensus       151 as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~  202 (365)
T 4h5i_A          151 ASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVI  202 (365)
T ss_dssp             EESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEE
T ss_pred             EECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEE
Confidence            466688999999999988766664 7788999999999999988743 45544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.87  E-value=2.5e-08  Score=56.55  Aligned_cols=55  Identities=20%  Similarity=0.421  Sum_probs=36.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      ++++|+.||.|++||+.+++....+.+|.+.|.++.|+++  .++++  |..+.+|..+
T Consensus       131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~--~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC--EEEEEeCCCeEEEEECC
Confidence            5677777777777777777766677777777777777643  44444  4456666543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.85  E-value=9.3e-09  Score=58.58  Aligned_cols=58  Identities=14%  Similarity=0.204  Sum_probs=46.0

Q ss_pred             EEEEeCCCcEEEEECC--CCceEEEEe--CCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVR--SGKEVASWM--SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~--~~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++++.||.|.+||+.  ++..+..+.  .|...+.+++|+|++..+++++.+..++.|++.
T Consensus       118 ~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          118 IACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             EEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence            4889999999999998  777666664  677889999999999999988666555555443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.84  E-value=3e-09  Score=64.25  Aligned_cols=59  Identities=12%  Similarity=0.234  Sum_probs=47.0

Q ss_pred             CEEEEEeCCCcEEEEECCC--CceEEEEeCCCCCCeEEEEcCC--CcEEEEcC--CcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPG--SLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~--~~~~~~~~~~~~~v~~v~~~~~--~~~~~s~~--~~~~~~~~~~   59 (69)
                      +++++|+.||.|.+||+..  +.....+.+|.+.|.+++|+|+  +..+++++  +.+.+|..+.
T Consensus        22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A           22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            3689999999999999974  3456677899999999999987  88888874  4577776443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.83  E-value=4.3e-08  Score=55.58  Aligned_cols=57  Identities=23%  Similarity=0.472  Sum_probs=46.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~   59 (69)
                      +++++|+.||.|.+||+.+++....+.+|...|.++.|+++  .++++  +..+.+|..+.
T Consensus       184 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          184 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT--EEEEEETTSCEEEEECSS
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC--EEEEeeCCCcEEEEeCCC
Confidence            36899999999999999999888888999999999999865  55555  55688876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.81  E-value=5.7e-09  Score=59.28  Aligned_cols=58  Identities=10%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             EEEEEeCCCcEEEEECCC----------CceEEEEeCCCCCCeEEEEcCCCc-EEEEcC--CcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRS----------GKEVASWMSFDTEPPVIKWTPGSL-MFVTGS--SELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~----------~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~--~~~~~~~~~~   59 (69)
                      ++++++.||.|.+|++.+          ......+.+|...+.+++|+|++. .+++++  +.+.+|..+.
T Consensus       143 ~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  213 (430)
T 2xyi_A          143 VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA  213 (430)
T ss_dssp             EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred             EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence            688999999999999976          455677889999999999999877 888774  4577776544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.70  E-value=1.3e-07  Score=56.67  Aligned_cols=57  Identities=18%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCC-----CCeEEEEcCCCcEEEEc--CCcEEEEcCCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDT-----EPPVIKWTPGSLMFVTG--SSELSFWIPDLSK   61 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~~   61 (69)
                      .+++++.||.|.+||...  .+..+. |..     .+.+++|+|++.+++++  |+.+.+|......
T Consensus        99 ~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A           99 WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            589999999999999543  444555 654     48999999999999988  4557888765544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.59  E-value=2.3e-07  Score=51.53  Aligned_cols=56  Identities=20%  Similarity=0.125  Sum_probs=43.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEE-EEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~s~--~~~~~~~~~~   58 (69)
                      .+++++.|+.|.+||+.+++....+..|.. +.+++|+|++..+ +++  +..+.+|...
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            478889999999999999887777776654 7899999998754 565  4456666543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.55  E-value=8.2e-09  Score=59.24  Aligned_cols=53  Identities=13%  Similarity=0.106  Sum_probs=39.9

Q ss_pred             EEeCCCcEEEEECCCC--------ce---EEEEeCCCCCCeEEEEcCC-CcEEEEc--CCcEEEEcC
Q 035275            5 SGSGDGSVYAWSVRSG--------KE---VASWMSFDTEPPVIKWTPG-SLMFVTG--SSELSFWIP   57 (69)
Q Consensus         5 s~~~d~~v~~wd~~~~--------~~---~~~~~~~~~~v~~v~~~~~-~~~~~s~--~~~~~~~~~   57 (69)
                      +++.|+.|++||+.++        +.   ...+.+|...|.+++|+|+ +.+++++  |..+++|..
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence            7888999999998654        21   3345678999999999997 6778876  445777654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.54  E-value=3.1e-07  Score=51.62  Aligned_cols=56  Identities=11%  Similarity=0.060  Sum_probs=45.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEE-EEc--CCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTG--SSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~s~--~~~~~~~~~   57 (69)
                      .+++++.|+.|.+||..+++....+..|...+.+++|+|++..+ +++  +..+.+|..
T Consensus       183 ~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~  241 (433)
T 3bws_A          183 LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR  241 (433)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence            57888999999999999888788888888889999999998765 455  344666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.45  E-value=1.5e-07  Score=52.92  Aligned_cols=57  Identities=12%  Similarity=0.073  Sum_probs=43.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEE-----EeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVAS-----WMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~-----~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .+++++.++.|.+||..+++....     +.+|.+.+.+++|+|++.++++++.  .+.+|..+
T Consensus       136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred             EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence            467777788999999998876652     3478888999999999998888754  46666543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.36  E-value=4.6e-06  Score=47.50  Aligned_cols=58  Identities=12%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             EEEEEeCCC---cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE-Ec--CCcEEEEcCCCC
Q 035275            2 FVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV-TG--SSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~---~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-s~--~~~~~~~~~~~~   60 (69)
                      .+++++.++   .|.+||+.+++. ..+..|.+.+.+++|+|++..++ ++  +.+..+|.||..
T Consensus       192 ~la~~s~~~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~  255 (415)
T 2hqs_A          192 KLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  255 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EEEEEEecCCCcEEEEEECCCCcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence            577787775   899999988874 45777888899999999998666 54  334456655543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.31  E-value=3.3e-06  Score=46.93  Aligned_cols=55  Identities=16%  Similarity=0.132  Sum_probs=40.8

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEE-EEcC--CcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGS--SELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~s~~--~~~~~~~~~   58 (69)
                      +++++.|+.|.+||..+++....+..+. .+.+++|+|++..+ +++.  ..+.+|..+
T Consensus        47 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           47 YVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            4677789999999999888766666554 78999999998865 4443  346666543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.27  E-value=1.3e-06  Score=50.04  Aligned_cols=55  Identities=7%  Similarity=0.032  Sum_probs=43.2

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      ++++..||.|.+||+.++....    +...|.|++|+|++..++.+++.+.+|.++...
T Consensus       139 ~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          139 LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEETTSCEEEEEEETTE
T ss_pred             EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEcCCcEEEEcCCCcc
Confidence            5677899999999998776432    334689999999997676778889999776544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.24  E-value=4.6e-06  Score=52.04  Aligned_cols=48  Identities=13%  Similarity=0.096  Sum_probs=40.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      +++++++.++.|.+||+.+++.......|.+.+..++|+|++..++.+
T Consensus       391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~  438 (1045)
T 1k32_A          391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  438 (1045)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEE
Confidence            367888999999999999887665566888889999999999877765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.20  E-value=1.3e-05  Score=43.61  Aligned_cols=56  Identities=13%  Similarity=0.034  Sum_probs=45.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      .+++++.++.|.+||..+++.+..+..+. ..+..+.+.|++.++++.+..+..+.+
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~   63 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR   63 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC
Confidence            57889999999999998999888887765 467889999999998876655555444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.20  E-value=9.7e-06  Score=43.89  Aligned_cols=56  Identities=13%  Similarity=0.073  Sum_probs=39.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCC-C-CCeEEEEcCCCcE-EEEcCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFD-T-EPPVIKWTPGSLM-FVTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~-~-~v~~v~~~~~~~~-~~s~~~--~~~~~~~   57 (69)
                      ++++++.++.|.+||..+++....+.... . .+..++|+|++.. ++++..  .+.+|..
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~   63 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL   63 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            68899999999999999887766664332 1 4678999999854 455543  4555543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.20  E-value=1.2e-05  Score=42.51  Aligned_cols=53  Identities=15%  Similarity=0.103  Sum_probs=40.2

Q ss_pred             EeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCC
Q 035275            6 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDL   59 (69)
Q Consensus         6 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~   59 (69)
                      ++.|+.|.+||+.+++. ..+..|.+.+.+++|+|++..++++ +..+.+|..+.
T Consensus        18 ~~~~~~i~~~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~   71 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKM-RVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAG   71 (297)
T ss_dssp             CCCCEEEEEEETTTTEE-EEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSS
T ss_pred             CCcceeEEEEeCCCCce-eeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCC
Confidence            45678999999988764 4566688889999999999887776 44566665444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.19  E-value=5.9e-06  Score=48.79  Aligned_cols=55  Identities=9%  Similarity=-0.017  Sum_probs=42.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      .+++++.|+.|.+||..+++.+..+..+.. +..++|+|++..+.+++.  .+.+|..
T Consensus       151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~  207 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDL  207 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEEC
Confidence            578888899999999999988777763323 779999999988777644  4555544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.12  E-value=6.3e-06  Score=48.33  Aligned_cols=58  Identities=12%  Similarity=0.018  Sum_probs=43.2

Q ss_pred             EEEEEeCC----CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCCC
Q 035275            2 FVISGSGD----GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d----~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~~   60 (69)
                      ++++++.+    +.|.+||+.+++ ...+..|.+.+..++|+|++..+++++.+  ..+|.||..
T Consensus       163 ~la~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          163 LIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR  226 (582)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred             EEEEEEEcCCCCeEEEEEcCCCCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence            56666665    679999998776 44677888888999999999988866433  466666654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.09  E-value=5.9e-06  Score=47.04  Aligned_cols=39  Identities=5%  Similarity=-0.113  Sum_probs=32.0

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS   49 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~   49 (69)
                      +.|.+||.+.+ ....+..|...+.+++|+|++..+++++
T Consensus       159 ~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s  197 (415)
T 2hqs_A          159 YELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVT  197 (415)
T ss_dssp             EEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEE
Confidence            68999999754 3566777888999999999998887763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.07  E-value=2.7e-05  Score=42.32  Aligned_cols=57  Identities=7%  Similarity=-0.192  Sum_probs=39.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEE-EEcCCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~s~~~~~~~~~~~~   59 (69)
                      .+++.+.++.|.+||..+++....+..+.... .++|+|++..+ +++..+..++.||.
T Consensus        12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~   69 (331)
T 3u4y_A           12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET   69 (331)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred             EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            36778888999999999988766666555555 99999998744 44433334444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.00  E-value=5.4e-05  Score=41.19  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=39.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCeEEEEcCCCcE-EEEcCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLM-FVTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~-~~s~~~--~~~~~~~   57 (69)
                      ++++++.++.|.+||..+++....+..+. ..+..++|+|++.. +++...  .+.+|..
T Consensus        13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~   72 (349)
T 1jmx_B           13 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL   72 (349)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence            57888899999999999888766665443 24678999999864 455433  4555543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.97  E-value=1.9e-05  Score=41.77  Aligned_cols=58  Identities=10%  Similarity=0.197  Sum_probs=41.9

Q ss_pred             EEEEEeCCCcEEEEECCC-CceEEEEeCC-CCCCeEEEEcCCCcEEEEcC----CcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRS-GKEVASWMSF-DTEPPVIKWTPGSLMFVTGS----SELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~-~~~~~~~~~~-~~~v~~v~~~~~~~~~~s~~----~~~~~~~~~~~   60 (69)
                      ++++++ ++.|.+||+.+ ++.......+ ...+.+++|+|++..++.+.    ....+|.++..
T Consensus        55 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           55 YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred             EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence            466665 68999999988 7655444455 36678899999998877764    35778876543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.90  E-value=8.8e-06  Score=48.54  Aligned_cols=42  Identities=12%  Similarity=0.153  Sum_probs=34.3

Q ss_pred             eCCCcEEEEECCCCceEEEEeCCCC---CCeEEEEcCCCcEEEEc
Q 035275            7 SGDGSVYAWSVRSGKEVASWMSFDT---EPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         7 ~~d~~v~~wd~~~~~~~~~~~~~~~---~v~~v~~~~~~~~~~s~   48 (69)
                      +.||.|.+||..+++....+..|..   .+..++|+|++..++++
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~   78 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFS   78 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEE
Confidence            6789999999998876666666654   48899999999988876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.90  E-value=5e-05  Score=44.91  Aligned_cols=56  Identities=9%  Similarity=0.087  Sum_probs=42.1

Q ss_pred             CEEEEEeCCCcEEEEEC--CCCceEEEEeCCCCCCeEEEEcC----CCcEEEEc---CCcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSV--RSGKEVASWMSFDTEPPVIKWTP----GSLMFVTG---SSELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~--~~~~~~~~~~~~~~~v~~v~~~~----~~~~~~s~---~~~~~~~~~   57 (69)
                      +++++++.|+.|.+||+  .+++.+..+... .....++|+|    ++..++++   +..+.+|..
T Consensus       191 ~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~  255 (543)
T 1nir_A          191 RYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG  255 (543)
T ss_dssp             CEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             CEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence            47888999999999999  777766666643 3458999999    98877765   345777643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.89  E-value=2.2e-05  Score=47.02  Aligned_cols=57  Identities=16%  Similarity=0.287  Sum_probs=39.5

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCC---CCeEEEEcCCCcEEEEcCC---------cEEEEcCCCC
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDT---EPPVIKWTPGSLMFVTGSS---------ELSFWIPDLS   60 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~---~v~~v~~~~~~~~~~s~~~---------~~~~~~~~~~   60 (69)
                      +..+.|+.|.+||+.+++....+..+..   .+..++|+|++..++.++.         +..+|+||..
T Consensus        30 ~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           30 LHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             EEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            3345689999999988875544444432   4789999999998876633         4556665543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.89  E-value=0.00015  Score=43.44  Aligned_cols=60  Identities=17%  Similarity=0.177  Sum_probs=41.3

Q ss_pred             CEEEEEeC-CC-----cEEEEECCCCceEEEEeCCCC------------------------CCeEEEEcCCCcEEEEc-C
Q 035275            1 MFVISGSG-DG-----SVYAWSVRSGKEVASWMSFDT------------------------EPPVIKWTPGSLMFVTG-S   49 (69)
Q Consensus         1 ~~~~s~~~-d~-----~v~~wd~~~~~~~~~~~~~~~------------------------~v~~v~~~~~~~~~~s~-~   49 (69)
                      +++++++. |+     .|.+||+.+++....+..+..                        .+..++|+|++..++.+ .
T Consensus        49 ~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~  128 (741)
T 2ecf_A           49 SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG  128 (741)
T ss_dssp             SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET
T ss_pred             CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC
Confidence            35777777 77     899999988875444433322                        27789999999887766 4


Q ss_pred             CcEEEEcCCCC
Q 035275           50 SELSFWIPDLS   60 (69)
Q Consensus        50 ~~~~~~~~~~~   60 (69)
                      ..+.+|..+..
T Consensus       129 ~~i~~~d~~~~  139 (741)
T 2ecf_A          129 GELYLYDLKQE  139 (741)
T ss_dssp             TEEEEEESSSC
T ss_pred             CcEEEEECCCC
Confidence            45666654433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.83  E-value=5e-05  Score=45.52  Aligned_cols=56  Identities=13%  Similarity=0.056  Sum_probs=41.0

Q ss_pred             EEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~   58 (69)
                      ++++++. +.|.+||+.++.  ....+..|...+..++|+|++..++.+ +.++.+|..+
T Consensus       122 ~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~  180 (741)
T 2ecf_A          122 RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA  180 (741)
T ss_dssp             EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETT
T ss_pred             EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecC
Confidence            5666665 889999998772  345567777888999999999987766 4455555443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.76  E-value=0.00011  Score=39.92  Aligned_cols=53  Identities=9%  Similarity=0.086  Sum_probs=35.5

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      ++++  ++.|.+||+.+++....+... ..+.+++|+|++..++++  +..+.+|..+
T Consensus       270 l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          270 IYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             EEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecc
Confidence            4444  678999999988766665433 345789999997655544  3346666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.76  E-value=0.00021  Score=38.80  Aligned_cols=45  Identities=11%  Similarity=0.011  Sum_probs=33.5

Q ss_pred             EEEeCCCcEEEEECCCCce-EEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            4 ISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      +++..++.|.+||..+++. ...+..+..+..++.|+|++..++++
T Consensus        56 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  101 (331)
T 3u4y_A           56 VTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTV  101 (331)
T ss_dssp             EEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEEC
T ss_pred             EEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEe
Confidence            3444478999999988876 55666666665559999999877755

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.70  E-value=0.00046  Score=37.62  Aligned_cols=56  Identities=11%  Similarity=-0.045  Sum_probs=39.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeC----CCCCCeEEEEcCCCcEEEE-cCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMS----FDTEPPVIKWTPGSLMFVT-GSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~~~s-~~~--~~~~~~~   57 (69)
                      ++++++.++.|.+||..+++....+..    +...+..+.|+|++..+.. ...  .+.+|..
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  260 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT  260 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            567778889999999998887666543    4455678999999875444 333  3555543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.69  E-value=0.00058  Score=36.88  Aligned_cols=50  Identities=8%  Similarity=0.149  Sum_probs=37.1

Q ss_pred             CCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            8 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         8 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      .++.|.+||..+++....+.. ...+..+.|+|++..++.++.++.+|..+
T Consensus       113 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~i~~~d~~  162 (337)
T 1pby_B          113 QPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMDPE  162 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEETT
T ss_pred             cCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeCCeEEEEECC
Confidence            468999999988876655544 34467888999998666667778777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.68  E-value=0.00025  Score=38.66  Aligned_cols=52  Identities=6%  Similarity=-0.054  Sum_probs=36.4

Q ss_pred             CCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            8 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         8 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      .++.|.+||..+++....+..+...+..+.|+|++..++.++.+-.++.+|.
T Consensus       162 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~  213 (353)
T 3vgz_A          162 KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDT  213 (353)
T ss_dssp             SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred             CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence            4778999999988877666655555778999999887666544433333443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.65  E-value=0.00043  Score=43.46  Aligned_cols=57  Identities=9%  Similarity=0.059  Sum_probs=42.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC------CcEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS------SELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~------~~~~~~~~~~~   60 (69)
                      .++.++. +.|.+|++..+. ...+..|.+.+.+++|+|++..++.++      .+..+|+|+..
T Consensus        26 ~iaf~~~-~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~   88 (1045)
T 1k32_A           26 RIIFVCC-DDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE   88 (1045)
T ss_dssp             EEEEEET-TEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             EEEEEEC-CcEEEEECCCCc-EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC
Confidence            3555554 689999997765 567788999999999999999888652      34566666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.65  E-value=0.0007  Score=37.13  Aligned_cols=57  Identities=14%  Similarity=0.240  Sum_probs=38.8

Q ss_pred             EEEeCCCcEEEEECCCC---ceEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275            4 ISGSGDGSVYAWSVRSG---KEVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      ++...++.|.+|++...   ..+..+..+...+..++|+|++..++++   +..+.+|..|..
T Consensus       256 v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             EEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence            56666889999998632   2334455556667899999999866554   245778755543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.63  E-value=0.00012  Score=39.62  Aligned_cols=56  Identities=9%  Similarity=0.178  Sum_probs=38.1

Q ss_pred             EEEEeCCCcEEEEECCC-Cce-EEEEeCCCCCCeEEEEcCCCcEEEEc-C--CcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRS-GKE-VASWMSFDTEPPVIKWTPGSLMFVTG-S--SELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~-~~~-~~~~~~~~~~v~~v~~~~~~~~~~s~-~--~~~~~~~~~   58 (69)
                      +++++.|+.|.+|+++. +.. ......+...+.+++|+|++..++++ .  ..+.+|..+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~   68 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA   68 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence            44557789999999953 321 22234566778899999999865554 2  457777665

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.56  E-value=0.0016  Score=35.96  Aligned_cols=58  Identities=14%  Similarity=0.292  Sum_probs=37.6

Q ss_pred             EEEEEeC--CCcEEEEECC--CCc--eEEEEeCCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275            2 FVISGSG--DGSVYAWSVR--SGK--EVASWMSFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~--d~~v~~wd~~--~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      +++++..  ++.|.+|+++  ++.  .+..+.. ...+..++|+|++..++.+   +..+.+|.+|..
T Consensus       272 ~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          272 YLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             EEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred             EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence            4544444  4789999986  344  2333333 4556799999999866654   345888877753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.55  E-value=0.0005  Score=37.21  Aligned_cols=55  Identities=7%  Similarity=-0.007  Sum_probs=36.4

Q ss_pred             EEEeCCCcEEEEECC--CCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcC---CcEEEEcCCC
Q 035275            4 ISGSGDGSVYAWSVR--SGK--EVASWMSFDTEPPVIKWTPGSLMFVTGS---SELSFWIPDL   59 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~--~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~---~~~~~~~~~~   59 (69)
                      +++..++.|.+||+.  ++.  .+..+..+.. +..++|+|++..++.++   ..+.+|..+.
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            355578899999997  332  2333444444 78899999988655543   4588885553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.53  E-value=0.0013  Score=35.90  Aligned_cols=47  Identities=15%  Similarity=0.244  Sum_probs=34.6

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS   49 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~   49 (69)
                      ++++..++.|.+||..+++.......+...+.++.++|++.++++..
T Consensus        59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~  105 (333)
T 2dg1_A           59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL  105 (333)
T ss_dssp             EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC
T ss_pred             EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeC
Confidence            45667788899999887764333335566788999999998877754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.52  E-value=0.00027  Score=42.85  Aligned_cols=48  Identities=8%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~   58 (69)
                      +.+.+||+.+++ ...+..+.+.+..++|||++..++.+ +.++.+|..+
T Consensus        92 ~~~~~~d~~~~~-~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~  140 (740)
T 4a5s_A           92 ASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP  140 (740)
T ss_dssp             EEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESST
T ss_pred             eEEEEEECCCCc-EEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECC
Confidence            567799998876 44566777888999999999887765 5566666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.51  E-value=0.00023  Score=39.49  Aligned_cols=56  Identities=11%  Similarity=-0.037  Sum_probs=35.8

Q ss_pred             EEEEEeC-CC--cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            2 FVISGSG-DG--SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~-d~--~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      +++.++. ++  .|.+||+.+++.......+...+..+.|+|++..++.+..  .+.+|..
T Consensus        49 ~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~  109 (388)
T 3pe7_A           49 KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDL  109 (388)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEET
T ss_pred             EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEEC
Confidence            4566665 56  3888898877644334455555556789999987776643  3544443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.46  E-value=0.0012  Score=35.63  Aligned_cols=54  Identities=11%  Similarity=0.075  Sum_probs=40.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      .++++..++.|..|+..++  ...+..+...+.++.++|++.++++...  .+..|.+
T Consensus        42 l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            4677778889999999776  5566667777889999999988887644  3555544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.43  E-value=0.001  Score=39.81  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=37.2

Q ss_pred             CCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275            8 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus         8 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~   58 (69)
                      .++.+.+||+.+++ ...+..+...+..++|+|++..++.+ +.++.+|..+
T Consensus        99 ~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~  149 (706)
T 2z3z_A           99 TQGGLVGFDMLARK-VTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGG  149 (706)
T ss_dssp             ETTEEEEEETTTTE-EEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECB
T ss_pred             ECCEEEEEECCCCc-eEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecC
Confidence            35899999998775 45556667778889999999877765 5566666544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.37  E-value=0.0003  Score=42.65  Aligned_cols=47  Identities=4%  Similarity=0.115  Sum_probs=34.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCC-----CeEEEEcCCCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTE-----PPVIKWTPGSLMFVTGSS   50 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~-----v~~v~~~~~~~~~~s~~~   50 (69)
                      +++++  |+.|.+||+.++.....+..|...     ...++|+|++..++.+..
T Consensus        30 ~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~   81 (740)
T 4a5s_A           30 YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN   81 (740)
T ss_dssp             EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred             EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence            45564  899999999998866666666532     234789999998777643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.35  E-value=0.00027  Score=41.50  Aligned_cols=55  Identities=9%  Similarity=0.071  Sum_probs=41.3

Q ss_pred             EEEEEeCCC--cEEEEECCCCceEEEEeCCCCCCeEEE--------EcCCCcEEEEc--CCcEEEEcC
Q 035275            2 FVISGSGDG--SVYAWSVRSGKEVASWMSFDTEPPVIK--------WTPGSLMFVTG--SSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~--~v~~wd~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~~~s~--~~~~~~~~~   57 (69)
                      .++++..++  .|.+||+.+++.. .+..|...+..+.        |+|++.+++++  +....+|..
T Consensus       208 ~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          208 VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            566777788  8999999888765 6677776666666        99999777766  455777765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.35  E-value=0.00089  Score=37.57  Aligned_cols=47  Identities=9%  Similarity=0.118  Sum_probs=36.4

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC-CcEEEEcCC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-SELSFWIPD   58 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~-~~~~~~~~~   58 (69)
                      +.|.+||..+++.+..+..+.  ...+.|+|++..+.+++ ..+.+|...
T Consensus       286 ~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~  333 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDIS  333 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECS
T ss_pred             ceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECC
Confidence            479999999998888887776  78999999988766654 457776443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.31  E-value=0.00028  Score=42.21  Aligned_cols=55  Identities=9%  Similarity=0.134  Sum_probs=37.4

Q ss_pred             EEEEEeCC---------CcEEEEECCCCceEEEEe---CCCCCCeEEEEcCCCcEEEEc-CCcEEEEcC
Q 035275            2 FVISGSGD---------GSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTG-SSELSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d---------~~v~~wd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~   57 (69)
                      ++++++.+         +.+.+||+.++.. ..+.   .|...+..++|+|++..++.+ +.++.+|..
T Consensus        74 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~  141 (723)
T 1xfd_A           74 YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH  141 (723)
T ss_dssp             EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred             EEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEEC
Confidence            56666653         6788999988764 3343   344557889999999887766 444555543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.29  E-value=0.0016  Score=38.71  Aligned_cols=49  Identities=12%  Similarity=0.221  Sum_probs=34.7

Q ss_pred             cEEEEECC-CCc--eEEEE-eCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCCC
Q 035275           11 SVYAWSVR-SGK--EVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL   59 (69)
Q Consensus        11 ~v~~wd~~-~~~--~~~~~-~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~~   59 (69)
                      .|.+||+. ++.  ....+ ..|...+..+.|+|++.++++++.+  ..+|.++.
T Consensus       218 ~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~  272 (662)
T 3azo_A          218 ELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP  272 (662)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred             EEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence            79999998 561  33344 4556778899999999877766443  47777764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.29  E-value=0.00091  Score=36.68  Aligned_cols=57  Identities=14%  Similarity=0.156  Sum_probs=34.9

Q ss_pred             EEEEEe-CCCcEEEEECCC-Cc--eEEEEeCC---------CCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGS-GDGSVYAWSVRS-GK--EVASWMSF---------DTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~-~d~~v~~wd~~~-~~--~~~~~~~~---------~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      ++++++ .++.+.+|++.. +.  .+......         ...+.++.|+|++.++++.  +..+.+|..+
T Consensus        99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence            456666 678999999953 32  12222211         1236789999999866665  3346666554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.24  E-value=0.00042  Score=41.55  Aligned_cols=47  Identities=11%  Similarity=0.200  Sum_probs=33.3

Q ss_pred             CCcEEEEECCCCceE--EEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275            9 DGSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus         9 d~~v~~wd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~   58 (69)
                      ++.|.+||+.+++..  ..+   ...+..++|+|++..++.+ +.++.+|..+
T Consensus        89 ~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~  138 (719)
T 1z68_A           89 TATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRP  138 (719)
T ss_dssp             EEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred             ceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEECCeEEEEeCC
Confidence            688999999887641  222   2457789999999887765 5566666543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.23  E-value=0.00087  Score=37.78  Aligned_cols=55  Identities=16%  Similarity=0.126  Sum_probs=33.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      .+++++.|+.|..||..+|+..+.+..  +.+.+..+..++..++.++.+..++.+|
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d   65 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG   65 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence            578889999999999999998887765  4444443445565566543333333344

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.15  E-value=0.0012  Score=39.58  Aligned_cols=59  Identities=15%  Similarity=0.209  Sum_probs=41.3

Q ss_pred             EEEEEeCCCcEEEEECC-CCceEEEEeCCCCCCeE-EEEcCCCcEEE-EcCC----cEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVR-SGKEVASWMSFDTEPPV-IKWTPGSLMFV-TGSS----ELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~-~~~~~~~~~~~~~~v~~-v~~~~~~~~~~-s~~~----~~~~~~~~~~   60 (69)
                      ++++++.|+.+.+|+++ ++.....+..+...+.. +.|+|++..++ ++..    ...+|.++..
T Consensus       325 ~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          325 FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            56778888888888876 55666777777777765 79999987554 3322    3577777653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.14  E-value=0.008  Score=32.10  Aligned_cols=56  Identities=7%  Similarity=0.071  Sum_probs=36.8

Q ss_pred             EEEEEeCCC-cEEEEECCCCceEEEEeCCCC--CCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275            2 FVISGSGDG-SVYAWSVRSGKEVASWMSFDT--EPPVIKWTPGSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~-~v~~wd~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~~s~-~~~~~~~~~~   58 (69)
                      .+++...++ .|.+|+. +++.+..+..+..  .+..+++.|++.++++. +..+.+|.+.
T Consensus       220 l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          220 ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence            345555565 8999996 4555555544432  35689999999887775 4457777543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.02  E-value=0.00079  Score=37.10  Aligned_cols=52  Identities=12%  Similarity=0.176  Sum_probs=37.4

Q ss_pred             CCcEEEEECCCCceEEEEe---CCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            9 DGSVYAWSVRSGKEVASWM---SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +..|.+|+..+++.+..+.   .+......++++|++.++++...+-+|+.|+..
T Consensus       267 ~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          267 PVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             CcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            3489999998888776663   455567899999999888887555455544443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.94  E-value=0.011  Score=32.49  Aligned_cols=49  Identities=10%  Similarity=0.005  Sum_probs=34.6

Q ss_pred             CcEEEEECCCCceEEEEe-CCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275           10 GSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      +.|.+||..+++....+. .+-.....+++.|++.++++...+  +..|..+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~  120 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPH  120 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            469999998888665554 344456899999999988876443  5555544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.90  E-value=0.0058  Score=36.66  Aligned_cols=57  Identities=7%  Similarity=-0.038  Sum_probs=39.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~   59 (69)
                      ++++...++.|.++|..+++.+..+.... ....+.|+|++..+..++.+..+..+|.
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~  225 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDL  225 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEEC
Confidence            45677778899999999998777765332 3458999999987665544434444444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.90  E-value=0.015  Score=31.21  Aligned_cols=57  Identities=12%  Similarity=0.183  Sum_probs=38.2

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcCC--cEEEEcCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSS--ELSFWIPDL   59 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~--~~~~~~~~~   59 (69)
                      +++...++.|..||..+++....+..+...+.++.++|++. ++++...  .+..+..+.
T Consensus       240 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            44545667899999876665555555656678999999987 6666544  455554443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=96.84  E-value=0.011  Score=34.05  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=39.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      +++++ .++.|.+||+.+.........|...+..+.+.+....+++.++.+.+|...
T Consensus        99 ~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           99 QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLR  154 (388)
T ss_dssp             EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred             EEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEcc
Confidence            46666 778999999987665555667777788888776543444556677777543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.78  E-value=0.0042  Score=34.27  Aligned_cols=57  Identities=14%  Similarity=0.164  Sum_probs=36.0

Q ss_pred             EEEEEe-CCCcEEEEECCCCce--EEEEe---CCCCCCeEEEEcCCCcEEE-EcC---CcEEEEcCC
Q 035275            2 FVISGS-GDGSVYAWSVRSGKE--VASWM---SFDTEPPVIKWTPGSLMFV-TGS---SELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~-~d~~v~~wd~~~~~~--~~~~~---~~~~~v~~v~~~~~~~~~~-s~~---~~~~~~~~~   58 (69)
                      ++++++ .++.|.+|++.++..  ...+.   .+......+.|+|++..+. +..   ..+.+|..+
T Consensus       224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            454555 578999999986643  22232   2233457899999998664 432   347777665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.75  E-value=0.017  Score=32.17  Aligned_cols=51  Identities=16%  Similarity=0.038  Sum_probs=34.0

Q ss_pred             CCCcEEEEECCC-CceEEEEe----CCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCC
Q 035275            8 GDGSVYAWSVRS-GKEVASWM----SFDTEPPVIKWTPGSLMFVTG---SSELSFWIPD   58 (69)
Q Consensus         8 ~d~~v~~wd~~~-~~~~~~~~----~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~   58 (69)
                      .++.+.+|+++. +.....+.    .+...+.++.|+|++..++++   +..+.+|..+
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence            678999999973 54333332    245567899999999766554   3346666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.64  E-value=0.03  Score=31.13  Aligned_cols=58  Identities=12%  Similarity=0.143  Sum_probs=37.8

Q ss_pred             EEEEEe-CCCcEEEEECC-CCceE--EEEe--CCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCCC
Q 035275            2 FVISGS-GDGSVYAWSVR-SGKEV--ASWM--SFDTEPPVIKWTPGSLMFVTG---SSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~-~d~~v~~wd~~-~~~~~--~~~~--~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~~   59 (69)
                      +++++. .++.|.+|++. +++..  ..+.  .|...+..+.|+|++..++.+   +..+.+|.++.
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence            455544 35689999998 66532  2233  234567889999999766544   34578887664

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.59  E-value=0.025  Score=30.70  Aligned_cols=48  Identities=10%  Similarity=0.050  Sum_probs=35.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE   51 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~   51 (69)
                      ++++...++.|..||.. ++.++.+.... ....+...+++..++++...
T Consensus       138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTT
T ss_pred             EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCC
Confidence            57778888999999987 88888876543 34567778888877776433

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.55  E-value=0.0068  Score=33.55  Aligned_cols=53  Identities=17%  Similarity=0.344  Sum_probs=35.9

Q ss_pred             eCCCcEEEEECCCCceEEEEeCCCC-----------CCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275            7 SGDGSVYAWSVRSGKEVASWMSFDT-----------EPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus         7 ~~d~~v~~wd~~~~~~~~~~~~~~~-----------~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      ..+..|.+||+.++. ...+..+..           .+..++|+|++..++..   +....+|..+..
T Consensus       317 ~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          317 ENDPFLYVFNMKNGT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             CCCCEEEEEETTTTE-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             CCCCEEEEEeccCCc-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence            445689999998775 455555554           46788999999766543   335677776554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.50  E-value=0.0094  Score=32.89  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=37.6

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIP   57 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~   57 (69)
                      +++...++.|.++|..+++.+..+.. ......+.+++++.++++.  +..+.++..
T Consensus        57 yv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~  112 (328)
T 3dsm_A           57 WIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINP  112 (328)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEET
T ss_pred             EEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEEC
Confidence            44555678999999999987777743 3445788898888777765  344555543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.46  E-value=0.031  Score=30.04  Aligned_cols=58  Identities=14%  Similarity=0.312  Sum_probs=36.0

Q ss_pred             EEEEeCCCcEEEEECC-CCce---EEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVR-SGKE---VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~-~~~~---~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++...++.|.+|++. ++..   ...+..+.+.+.++.+.+++.++++.+..+.+|.++..
T Consensus       186 lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~  247 (296)
T 3e5z_A          186 LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGD  247 (296)
T ss_dssp             EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSC
T ss_pred             EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCC
Confidence            4555566788888886 4432   12222344455678888888877776555777666543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.39  E-value=0.03  Score=29.83  Aligned_cols=55  Identities=13%  Similarity=0.185  Sum_probs=36.5

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCC--CCCCeEEEEcCCCcEEEEcCC---cEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSS---ELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~~s~~~---~~~~~~~~   58 (69)
                      +++...++.|.+||. ++..+..+..+  ......+++++++.++++...   .+.+|..+
T Consensus       178 ~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          178 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             EEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            455556788999997 45545555433  345678999999988887633   45665543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.38  E-value=0.022  Score=29.94  Aligned_cols=55  Identities=7%  Similarity=0.023  Sum_probs=33.5

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP   57 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~   57 (69)
                      +++...++.|.+|+............+...+.++.+.+++.++++...+  +.++..
T Consensus       206 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          206 YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             EEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            3444456789999886544322112233456889999998887776444  555443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.31  E-value=0.0031  Score=37.47  Aligned_cols=58  Identities=9%  Similarity=-0.088  Sum_probs=37.8

Q ss_pred             EEEEEeCC----------CcEEEEECCC------CceEEEEe-CCCCCCeEEEEcCCCcEEEEc--CC------cEEEEc
Q 035275            2 FVISGSGD----------GSVYAWSVRS------GKEVASWM-SFDTEPPVIKWTPGSLMFVTG--SS------ELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d----------~~v~~wd~~~------~~~~~~~~-~~~~~v~~v~~~~~~~~~~s~--~~------~~~~~~   56 (69)
                      .|++++.+          ..|.+||+.+      +. ...+. .+...+..++|+|++..++.+  +.      ...+|+
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~  221 (662)
T 3azo_A          143 EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT  221 (662)
T ss_dssp             EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE
T ss_pred             EEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE
Confidence            45666655          4799999987      44 44555 555566678899999877654  22      245666


Q ss_pred             CCCC
Q 035275           57 PDLS   60 (69)
Q Consensus        57 ~~~~   60 (69)
                      ++..
T Consensus       222 ~d~~  225 (662)
T 3azo_A          222 ARVT  225 (662)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.30  E-value=0.022  Score=31.98  Aligned_cols=41  Identities=12%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             EEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCeEEEEcCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWTPGSL   43 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~--~~~~~~~~~~~~v~~v~~~~~~~   43 (69)
                      ++++++. +.|.+||..++  +.+..+..+......+.++|++.
T Consensus       318 ~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          318 LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            5666666 89999999999  77767655555567889999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.05  E-value=0.029  Score=30.57  Aligned_cols=36  Identities=6%  Similarity=0.137  Sum_probs=23.9

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      .|.+|++.+++.. .+..+.. +..+.|+|++..++.+
T Consensus        86 ~l~~~~~~~g~~~-~l~~~~~-~~~~~wspdg~~l~~~  121 (347)
T 2gop_A           86 EIWVADLETLSSK-KILEAKN-IRSLEWNEDSRKLLIV  121 (347)
T ss_dssp             EEEEEETTTTEEE-EEEEESE-EEEEEECTTSSEEEEE
T ss_pred             eEEEEECCCCceE-EEEcCCC-ccceeECCCCCEEEEE
Confidence            3778888776543 3322233 7899999999766654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=95.98  E-value=0.012  Score=35.61  Aligned_cols=37  Identities=14%  Similarity=0.187  Sum_probs=24.9

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      .|.+||+.+++.......+ ..+..++|+|++..++.+
T Consensus       152 ~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~  188 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYN  188 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEE
T ss_pred             EEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEE
Confidence            7999999888754322111 225678999998766544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.98  E-value=0.074  Score=28.80  Aligned_cols=56  Identities=7%  Similarity=-0.005  Sum_probs=37.8

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++...++.|..||..++.. ..+. ....+.++.+.|++.++++....+..+.++..
T Consensus        28 ~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g   83 (297)
T 3g4e_A           28 LFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATIGTKFCALNWKEQ   83 (297)
T ss_dssp             EEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEETTEEEEEETTTT
T ss_pred             EEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEECCeEEEEECCCC
Confidence            45555667899999877653 2332 34567899999999877776555666655433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.93  E-value=0.036  Score=33.54  Aligned_cols=58  Identities=5%  Similarity=-0.179  Sum_probs=37.2

Q ss_pred             EEEEEeCCCc-------------EEEEECCCCce--EEEE--eCCCCCCeEEEEcCCCcEEEEc--C--CcEEEEcCCC
Q 035275            2 FVISGSGDGS-------------VYAWSVRSGKE--VASW--MSFDTEPPVIKWTPGSLMFVTG--S--SELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~-------------v~~wd~~~~~~--~~~~--~~~~~~v~~v~~~~~~~~~~s~--~--~~~~~~~~~~   59 (69)
                      .|+.++.|..             |.+|++.++..  ....  ..+...+..+.|+|++..++.+  +  ....+|+++.
T Consensus       181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~  259 (695)
T 2bkl_A          181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP  259 (695)
T ss_dssp             EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred             EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence            4666666654             99999987752  2222  3455567789999998765543  3  2456676654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.89  E-value=0.017  Score=31.85  Aligned_cols=46  Identities=7%  Similarity=-0.114  Sum_probs=27.2

Q ss_pred             cEEEEECCCCceEEEEeCCCCC-CeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~-v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      .|.+||+.+++ ...+..+... ...+.|+|++..++....  ++.+|..
T Consensus        61 ~l~~~d~~~~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~  109 (396)
T 3c5m_A           61 NYYLLNLETQQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDL  109 (396)
T ss_dssp             EEEEEETTTTE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred             eEEEEECCCCc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence            68888987775 3444333333 234779999987765533  3444443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.77  E-value=0.043  Score=33.01  Aligned_cols=54  Identities=13%  Similarity=0.064  Sum_probs=37.1

Q ss_pred             CEEEEEeCCCcEEEEECC--CCceEEEEeCCCCCCeEEEEc----CCCcEEEEc---CCcEEEE
Q 035275            1 MFVISGSGDGSVYAWSVR--SGKEVASWMSFDTEPPVIKWT----PGSLMFVTG---SSELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~--~~~~~~~~~~~~~~v~~v~~~----~~~~~~~s~---~~~~~~~   55 (69)
                      +++.+++.|+.|.+||+.  +++.+..+..... ...+.|+    |++..+..+   +..+.++
T Consensus       209 r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi  271 (567)
T 1qks_A          209 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIM  271 (567)
T ss_dssp             CEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence            467778889999999995  6666666654333 3688999    688766554   3345554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.73  E-value=0.0041  Score=37.55  Aligned_cols=44  Identities=20%  Similarity=0.173  Sum_probs=26.8

Q ss_pred             EEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            5 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         5 s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      +|+++..|.+||+.+++..............++|+|++..++.+
T Consensus       142 ~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~  185 (695)
T 2bkl_A          142 NAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYE  185 (695)
T ss_dssp             TTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEE
T ss_pred             CCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEE
Confidence            34445689999998887430101111112578899998876654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.70  E-value=0.054  Score=28.46  Aligned_cols=56  Identities=14%  Similarity=0.133  Sum_probs=34.4

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++...++.|.+||............+.....++.+.+++.++++..  ..+..+..+
T Consensus       164 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          164 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             EEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            34444456888888866553322223335567899999988777763  346665544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=95.51  E-value=0.062  Score=32.60  Aligned_cols=49  Identities=8%  Similarity=0.036  Sum_probs=29.9

Q ss_pred             EEEEECCCCce--EEEEe--CCCCCCeEEEEcCCCcEEEEcC--C---cEEEEcCCCC
Q 035275           12 VYAWSVRSGKE--VASWM--SFDTEPPVIKWTPGSLMFVTGS--S---ELSFWIPDLS   60 (69)
Q Consensus        12 v~~wd~~~~~~--~~~~~--~~~~~v~~v~~~~~~~~~~s~~--~---~~~~~~~~~~   60 (69)
                      |.+|++.++..  .....  .|...+..+.|+|++..++...  .   +..+|+++..
T Consensus       210 v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             EEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence            99999987652  22222  2445567889999997666431  1   3455555543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=95.50  E-value=0.065  Score=29.20  Aligned_cols=54  Identities=9%  Similarity=0.088  Sum_probs=35.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCc-EEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSE-LSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~-~~~~~~~   58 (69)
                      .+++++.++.+.+| +++++ ...+..+.+.+..+.|+| ...++.. +.. ..+|.++
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSS-EEEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred             EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence            35677888889999 77554 344445567788899999 4333333 333 4788776

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.31  E-value=0.11  Score=28.10  Aligned_cols=45  Identities=16%  Similarity=0.112  Sum_probs=32.5

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc-CCCc-EEEE
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGSL-MFVT   47 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~-~~~~-~~~s   47 (69)
                      .++...++.|..||..+++.+..+..+...+.+++|. |++. ++++
T Consensus       213 wva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          213 WVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             EEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             EEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence            4444556679999998888777777776778899998 7643 4444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.30  E-value=0.15  Score=27.64  Aligned_cols=55  Identities=13%  Similarity=0.050  Sum_probs=36.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      .+++...++.|..|+. ++. ...+..+...+..+.+.+++.++++...  .+..+..+
T Consensus        59 l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           59 LVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            3566777788999987 454 3444445566789999999988777543  35554443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.03  E-value=0.11  Score=27.81  Aligned_cols=52  Identities=17%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             EeCCCcEEEEECCCCceEEEEeC-----CCCCCeEEEEcCC-CcEEEEcC-CcEEEEcCC
Q 035275            6 GSGDGSVYAWSVRSGKEVASWMS-----FDTEPPVIKWTPG-SLMFVTGS-SELSFWIPD   58 (69)
Q Consensus         6 ~~~d~~v~~wd~~~~~~~~~~~~-----~~~~v~~v~~~~~-~~~~~s~~-~~~~~~~~~   58 (69)
                      +..++.|..||..+++.. .+..     +...+..+.+.++ +.++++.. ..+..|..+
T Consensus        42 ~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~  100 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD  100 (314)
T ss_dssp             TEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred             CCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC
Confidence            355678999998777642 3322     4456788999998 87666653 345555544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.93  E-value=0.2  Score=27.14  Aligned_cols=51  Identities=8%  Similarity=-0.041  Sum_probs=34.0

Q ss_pred             CcEEEEECCCCceEEEEe--CCCCCCeEEEEcCCCcEEEEcCC------cEEEEcCCCC
Q 035275           10 GSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTGSS------ELSFWIPDLS   60 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~s~~~------~~~~~~~~~~   60 (69)
                      +.|.+||..++.....+.  .+...+..+.+.|++.++++...      ...+|.++..
T Consensus       112 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~  170 (333)
T 2dg1_A          112 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD  170 (333)
T ss_dssp             CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred             ceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence            578999987765432332  23456788999999988877542      4667766643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.86  E-value=0.16  Score=31.19  Aligned_cols=45  Identities=20%  Similarity=0.358  Sum_probs=32.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CeEEEEcCCCcEEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSLMFV   46 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~-v~~v~~~~~~~~~~   46 (69)
                      .++.++.||.++.||.++++.+..+....+. ..-+.|..++..++
T Consensus       488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence            5778899999999999999998887544322 23466766765443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=94.73  E-value=0.28  Score=27.82  Aligned_cols=51  Identities=12%  Similarity=-0.074  Sum_probs=33.6

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcC-CcEEEEcCCCCC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS-SELSFWIPDLSK   61 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~-~~~~~~~~~~~~   61 (69)
                      +.|.+.|..+++.+..+..- +....+.|+|++. .+.++. .+-.++++|...
T Consensus       298 ~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          298 KEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            46888999888877777432 2457899999987 555543 344455555443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.69  E-value=0.01  Score=33.48  Aligned_cols=54  Identities=15%  Similarity=0.200  Sum_probs=22.3

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~   60 (69)
                      +++++.++.+..||..+|+....+..+.    ...++|.+..+..++.+..+..+|..
T Consensus        95 v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           95 LYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSS
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC
Confidence            4556678899999999998776664442    23455666566665555566666654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.65  E-value=0.18  Score=27.81  Aligned_cols=51  Identities=16%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             CCcEEEEECCCCceEEEEeCCCC-----------CCeEEEEcCCCcEEEEc---CCcEEEEcCCCC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDT-----------EPPVIKWTPGSLMFVTG---SSELSFWIPDLS   60 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~-----------~v~~v~~~~~~~~~~s~---~~~~~~~~~~~~   60 (69)
                      +..|.+||+.++.. ..+..+..           ....+.|+|++..++..   +....+|..+..
T Consensus       319 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~  383 (396)
T 3c5m_A          319 DPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP  383 (396)
T ss_dssp             CCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             CCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence            46799999987753 34444433           24567899998766543   234567765543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.63  E-value=0.27  Score=27.07  Aligned_cols=54  Identities=7%  Similarity=-0.013  Sum_probs=35.8

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      +++...++.|..||..++.. ..+. ....+.++.+.|++.++++....+..+.++
T Consensus        64 ~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~  117 (326)
T 2ghs_A           64 WWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSKQLIASDDGLFLRDTA  117 (326)
T ss_dssp             EEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTEEEEEETTEEEEEETT
T ss_pred             EEEECCCCEEEEEECCCCcE-EEEE-CCCcceEEEEeCCCeEEEEECCCEEEEECC
Confidence            45555667899999876653 3332 245678899999998877765445555443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=94.62  E-value=0.33  Score=28.10  Aligned_cols=38  Identities=3%  Similarity=-0.150  Sum_probs=27.9

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      ++.|.+.|..+++.+..+..-..+  .+.++|++..+..+
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVa   95 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHA   95 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEE
Confidence            568999999999887777543344  49999998755443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=94.46  E-value=0.1  Score=28.75  Aligned_cols=57  Identities=14%  Similarity=0.125  Sum_probs=34.9

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      .....++.+.++|..+.+.+.++.....   ...+++++..+..++.+-.++.+|...++
T Consensus       101 ~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~  157 (262)
T 3nol_A          101 GLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLT  157 (262)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCS
T ss_pred             EEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCe
Confidence            3445577899999999988877754322   22334455555555555556666665543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=94.38  E-value=0.29  Score=28.62  Aligned_cols=52  Identities=8%  Similarity=-0.142  Sum_probs=35.3

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC----------CcEEEEcCCCCCcC
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS----------SELSFWIPDLSKLG   63 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~----------~~~~~~~~~~~~~~   63 (69)
                      +.|.+.|..+.+.+..+..-..+  .+.++|++..+..++          .+-.+..+|...++
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            68999999999887777543344  799999987554432          23456666665443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=94.32  E-value=0.32  Score=26.76  Aligned_cols=48  Identities=6%  Similarity=-0.105  Sum_probs=32.6

Q ss_pred             CcEEEEECCCCceEEEEeCC-CCCCeEEEEcCCCcEEEEcCCcEEEEcC
Q 035275           10 GSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMFVTGSSELSFWIP   57 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~~s~~~~~~~~~~   57 (69)
                      +.|.++|..+++....+... ......++++|++..+..++..+.++..
T Consensus       203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~  251 (328)
T 3dsm_A          203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPV  251 (328)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEET
T ss_pred             ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEEC
Confidence            68999999888765555432 2356899999987766555555554443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=94.05  E-value=0.44  Score=27.27  Aligned_cols=50  Identities=8%  Similarity=-0.083  Sum_probs=33.7

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC----------CcEEEEcCCCCCc
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS----------SELSFWIPDLSKL   62 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~----------~~~~~~~~~~~~~   62 (69)
                      .|.+.|..+++.+..+..-..+  .+.++|++..+..++          .+-.+..+|....
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            7889999999888777543344  799999986544442          2455566665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.96  E-value=0.27  Score=27.23  Aligned_cols=58  Identities=7%  Similarity=-0.043  Sum_probs=35.1

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      +.....++.+.++|..+.+.+.++......   ..+.+++..+..++.+-.++.+|...++
T Consensus       109 y~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~  166 (268)
T 3nok_A          109 YQLTWTEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFA  166 (268)
T ss_dssp             EEEESSSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSEEEEECTTTCC
T ss_pred             EEEEccCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCCCe
Confidence            344566789999999999888777543222   2233445554444455566666665543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=93.83  E-value=0.47  Score=26.90  Aligned_cols=36  Identities=8%  Similarity=-0.121  Sum_probs=26.3

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      .|.++|..+++.+..+..-..+  .+.++|++..+..+
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~   83 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALA   83 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEE
Confidence            7899999988876666433333  89999998765554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=93.80  E-value=0.21  Score=27.17  Aligned_cols=58  Identities=7%  Similarity=-0.056  Sum_probs=34.9

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcCc
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA   64 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~~   64 (69)
                      .....++.+.++|..+.+.+.++...... -.+  .+++..+..++.+-.++.+|...++.
T Consensus        79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~  136 (243)
T 3mbr_X           79 QLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQ  136 (243)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCE
T ss_pred             EEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeE
Confidence            34556788999999998887777543222 233  34444444444455566666665443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=93.00  E-value=0.35  Score=29.62  Aligned_cols=37  Identities=5%  Similarity=0.057  Sum_probs=23.6

Q ss_pred             cEEEEECCCCce--EEEEeC--CCCCCeEEEEcCCCcEEEE
Q 035275           11 SVYAWSVRSGKE--VASWMS--FDTEPPVIKWTPGSLMFVT   47 (69)
Q Consensus        11 ~v~~wd~~~~~~--~~~~~~--~~~~v~~v~~~~~~~~~~s   47 (69)
                      .|.+|++.++..  ......  +...+..+.|+|++..++.
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~  284 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVI  284 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEE
Confidence            388999877652  222332  3334678899999976554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=92.90  E-value=0.33  Score=26.67  Aligned_cols=59  Identities=3%  Similarity=-0.073  Sum_probs=33.5

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      ..+...++.+.++|..+.+.+..+..-..  ....+++++..+..++.+-.++..|...++
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~  137 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFK  137 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCC
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCc
Confidence            34455667999999998887777643211  123345555433333344466666655433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=92.78  E-value=0.45  Score=27.28  Aligned_cols=54  Identities=13%  Similarity=-0.023  Sum_probs=31.7

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++...++.|..||..++...........+ . ++++|++..+..++.  ...+|.++
T Consensus       145 yv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          145 LAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEE
Confidence            344445578999998776644333333222 3 889999876665533  22555444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=92.64  E-value=0.81  Score=26.22  Aligned_cols=56  Identities=5%  Similarity=-0.035  Sum_probs=32.1

Q ss_pred             EEEEeCCCcEEEEECCCCceEEE----EeCCCCCC-e-EEEEcC-CCcEEEEcCCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVAS----WMSFDTEP-P-VIKWTP-GSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~----~~~~~~~v-~-~v~~~~-~~~~~~s~~~~~~~~~~~   58 (69)
                      +..+..++.|..||..++.....    ..++.+.- . .+.|+| ++.++++...+-.++.++
T Consensus       233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~  295 (409)
T 3hrp_A          233 LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKIT  295 (409)
T ss_dssp             EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            44456677899999877653222    12222222 2 899999 477777654443444433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=92.64  E-value=0.59  Score=24.62  Aligned_cols=52  Identities=10%  Similarity=0.178  Sum_probs=32.4

Q ss_pred             EEEeCCCcEEEEECCCCceEEEE--eCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      ++...++.|..||.. +. ...+  ..+...+..+.+.+++.++++...  .+..+..
T Consensus        30 v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           30 ITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             EEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             EEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence            333336789999987 54 3333  234456788999999888777643  3444433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=92.30  E-value=0.67  Score=24.42  Aligned_cols=53  Identities=9%  Similarity=0.055  Sum_probs=31.7

Q ss_pred             EEEEeCCCcEEEEECCCCceEEE-EeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEc
Q 035275            3 VISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWI   56 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~   56 (69)
                      +++...++.|..||. ++..... .......+..+.+.+++.++++...  .+..+.
T Consensus       113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A          113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT  168 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence            344445667888887 5543222 2333455688899999888776533  344443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=92.27  E-value=0.27  Score=28.44  Aligned_cols=52  Identities=17%  Similarity=0.039  Sum_probs=32.6

Q ss_pred             CCcEEEEECCCCceEEEEeCCC-------CCCeEEEEcCCCcEEEEcC--CcEEEEcCCCC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFD-------TEPPVIKWTPGSLMFVTGS--SELSFWIPDLS   60 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~-------~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~~   60 (69)
                      ++.|.+||..+.+....+....       .....+.++|++..+..+.  .+-.++++|..
T Consensus       108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~  168 (386)
T 3sjl_D          108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  168 (386)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC
Confidence            5679999999988777664221       1345788999987654432  23344444444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=91.73  E-value=1.1  Score=27.15  Aligned_cols=45  Identities=29%  Similarity=0.552  Sum_probs=31.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCC-eEEEEcCCCcEEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFV   46 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v-~~v~~~~~~~~~~   46 (69)
                      .++.++.|+.++.+|.++++.+..+....+.. .-+.|..++..++
T Consensus       499 lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          499 LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            46778999999999999999988875443321 2255555665433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=91.45  E-value=0.38  Score=27.51  Aligned_cols=40  Identities=10%  Similarity=-0.120  Sum_probs=28.5

Q ss_pred             CCcEEEEECCCCceEEEEeCC--C-----CCCeEEEEcCCCcEEEEc
Q 035275            9 DGSVYAWSVRSGKEVASWMSF--D-----TEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~--~-----~~v~~v~~~~~~~~~~s~   48 (69)
                      ++.|.++|..+++....+...  .     .....+.++|++..+..+
T Consensus        95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa  141 (368)
T 1mda_H           95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF  141 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence            568999999999887776433  0     224578899998655543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=91.27  E-value=1.3  Score=27.26  Aligned_cols=44  Identities=14%  Similarity=0.224  Sum_probs=30.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCeEEEEcCCCcEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMF   45 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~   45 (69)
                      .++.++.||.+.+||..+++.+..+.... ....-+.|.+++..+
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            46778899999999999999888875332 222345566666543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=90.58  E-value=1.3  Score=24.52  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=21.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMS   28 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~   28 (69)
                      .++.++.+|.+..+|..+++.+.....
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            467788889999999999987776654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=90.56  E-value=0.46  Score=26.30  Aligned_cols=59  Identities=12%  Similarity=-0.046  Sum_probs=35.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCe--EEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP--VIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~--~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      ++.+.+.+|.|...|+.+++.+..+ -. ....  .+.+..+ .++.+.-.+-.++.+|..+++
T Consensus        67 Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           67 FFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             EEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTE
T ss_pred             EEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCc
Confidence            4567778888999999999876555 22 2233  3555544 344444445555666655544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=90.02  E-value=1.5  Score=24.25  Aligned_cols=47  Identities=0%  Similarity=-0.074  Sum_probs=30.0

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeC-CCCCCeEEEEcCCCcEEEEcC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGS   49 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~s~~   49 (69)
                      +++...++.|.+||..+++....... +......++|.+++.++++..
T Consensus       262 ~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          262 YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            45555667899999855653222222 123457899999888877764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=90.01  E-value=0.61  Score=28.60  Aligned_cols=58  Identities=12%  Similarity=-0.026  Sum_probs=33.8

Q ss_pred             EEEEEeCCCcEEEEECC-CCceEEEEeC-CCCCCeEEEEcCCCcEEE-E---cCCcEEEEcCCC
Q 035275            2 FVISGSGDGSVYAWSVR-SGKEVASWMS-FDTEPPVIKWTPGSLMFV-T---GSSELSFWIPDL   59 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~-~~~~~~~~~~-~~~~v~~v~~~~~~~~~~-s---~~~~~~~~~~~~   59 (69)
                      .+++...|+...+|..+ ++.....+.. +.+.+..+.++|++..++ +   ......++.+|.
T Consensus       376 lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          376 LFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            45677778866666543 3544555543 356677888888765333 2   233455666554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=89.63  E-value=1.6  Score=23.99  Aligned_cols=44  Identities=18%  Similarity=0.353  Sum_probs=29.3

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc-CCCc-EEEEc
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT-PGSL-MFVTG   48 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~-~~~~-~~~s~   48 (69)
                      ++...++.|..||. +++.+..+..+...+.+++|. |++. ++++.
T Consensus       245 va~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          245 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            34444578999998 566566666666668899998 7754 44443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=89.47  E-value=1.4  Score=23.17  Aligned_cols=54  Identities=6%  Similarity=0.006  Sum_probs=32.3

Q ss_pred             EEEeCCCcEEEEECCCCceEE-EEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            4 ISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      ++...++.|.++|.. ++... .+......+..+.+.+++.++++...  .+..+..+
T Consensus        35 v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           35 FTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            344456788888877 54322 12233356678889998887777543  35444433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=88.51  E-value=1.7  Score=22.86  Aligned_cols=53  Identities=15%  Similarity=0.134  Sum_probs=31.6

Q ss_pred             EEEeCCCcEEEEECCCCceEEEE--eCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASW--MSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      ++...++.|..+|.. +.. ..+  ......+..+.+.+++.++++..  ..+..+..+
T Consensus        77 v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A           77 FTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             EEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence            333445678888876 543 333  22335567888999888777753  234444433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=88.30  E-value=2.8  Score=25.11  Aligned_cols=40  Identities=15%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             CcEEEEECCCCceEEEEeCC--C-CCCeEEEEcCCCcEEEEcC
Q 035275           10 GSVYAWSVRSGKEVASWMSF--D-TEPPVIKWTPGSLMFVTGS   49 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~--~-~~v~~v~~~~~~~~~~s~~   49 (69)
                      |.+.+.|..+.+....+...  . .--..+.|+|++..+++++
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~  206 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE  206 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred             CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence            67999999988888777522  2 1123577899988877773

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=87.80  E-value=2.2  Score=23.50  Aligned_cols=60  Identities=13%  Similarity=-0.079  Sum_probs=34.4

Q ss_pred             EEEEeCCC--cEEEEECCCCceEEEEeCCCCCC-eEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            3 VISGSGDG--SVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         3 ~~s~~~d~--~v~~wd~~~~~~~~~~~~~~~~v-~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      +.+++.+|  .|...|+.+++.+..+....... ..+....+ .++.+.-.+-.++.+|..+++
T Consensus        56 yestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~-~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           56 YESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD-KIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT-EEEEEESSSSEEEEEETTTCC
T ss_pred             EEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC-EEEEEEeeCCEEEEEECccCc
Confidence            45566655  89999999998777765443321 23444433 344444344455555555444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=86.33  E-value=1  Score=26.37  Aligned_cols=46  Identities=11%  Similarity=0.068  Sum_probs=30.8

Q ss_pred             CcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEc---CCcEEEEc
Q 035275           10 GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTG---SSELSFWI   56 (69)
Q Consensus        10 ~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~---~~~~~~~~   56 (69)
                      +.|.+.|..+.+.+..+..-. ....+.|+|++. .+.++   +.++.++.
T Consensus       350 ~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          350 RFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence            469999999988777664222 246889999987 55554   33455544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=86.31  E-value=3.9  Score=24.68  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=29.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CeEEEEcCCCcEEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSLMFV   46 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~-v~~v~~~~~~~~~~   46 (69)
                      .++.++.|+.|..+|..+++.+..+...... -.-+.+..++..++
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence            4667889999999999999988877533221 12233545665444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=84.71  E-value=5  Score=24.55  Aligned_cols=43  Identities=16%  Similarity=0.118  Sum_probs=29.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCC-eEEEEcCCCcE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLM   44 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v-~~v~~~~~~~~   44 (69)
                      .++.++.|+.++.+|.++++.+.......+.. .-+.|..++..
T Consensus       486 ~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          486 LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            46678899999999999999888775332211 22445455543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=84.54  E-value=3.6  Score=22.76  Aligned_cols=28  Identities=25%  Similarity=0.209  Sum_probs=21.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSF   29 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~   29 (69)
                      .++.++.++.|..+|..+++........
T Consensus       105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A          105 HVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            4667778899999999999877666433

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=84.47  E-value=2.3  Score=26.95  Aligned_cols=26  Identities=12%  Similarity=0.275  Sum_probs=21.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW   26 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~   26 (69)
                      .++++-+.|.++++|++.++..+...
T Consensus       232 ~fLftL~~Dh~LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          232 RYLIVLTQNCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             TEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             cEEEEEEcCCeEEEEEcCCCceEEee
Confidence            36888999999999999998755443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.15  E-value=2.4  Score=27.74  Aligned_cols=24  Identities=13%  Similarity=0.062  Sum_probs=20.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVAS   25 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~   25 (69)
                      ++++-+.|+++++|++.++..+..
T Consensus       251 ~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          251 VLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             EEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCeEEe
Confidence            678899999999999998865443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=82.78  E-value=5.9  Score=24.24  Aligned_cols=36  Identities=11%  Similarity=0.043  Sum_probs=22.8

Q ss_pred             cEEEEECCCCce--EEEEe--C-CCCCCeEEEEcCCCcEEE
Q 035275           11 SVYAWSVRSGKE--VASWM--S-FDTEPPVIKWTPGSLMFV   46 (69)
Q Consensus        11 ~v~~wd~~~~~~--~~~~~--~-~~~~v~~v~~~~~~~~~~   46 (69)
                      .|.+|++.++..  .....  . |......+.++|++..++
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~  249 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLL  249 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence            488999877542  22222  2 344456888999987654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=82.62  E-value=1.8  Score=26.69  Aligned_cols=49  Identities=10%  Similarity=0.022  Sum_probs=27.4

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      +|.|..||+.+++.......+... ..-.+...+.++..++.+..++.+|
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEECCCCcEEEEE
Confidence            478999999999988777544322 2123333444444444443343333

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.76  E-value=3.2  Score=26.80  Aligned_cols=23  Identities=13%  Similarity=0.043  Sum_probs=19.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEE
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVA   24 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~   24 (69)
                      ++++-+.|+++++|++.++..+.
T Consensus       249 ~lftl~~D~~LRiWsl~t~~~v~  271 (950)
T 4gq2_M          249 VLVMLSLDYKLKVLDLSTNQCVE  271 (950)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEE
T ss_pred             EEEEEECCCEEEEEECCCCCeEe
Confidence            67889999999999999886544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=80.61  E-value=4.9  Score=21.51  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=32.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC-CcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-SELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~-~~~~~~~   56 (69)
                      .+..++.++.|..+|.. +........+...+..+...+++.+++... ..+..+.
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d  163 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAIN  163 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEEC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEEC
Confidence            35667777888888887 666655554444455555666666655442 3344443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=80.54  E-value=4.9  Score=21.49  Aligned_cols=52  Identities=15%  Similarity=0.125  Sum_probs=27.2

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEE
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFW   55 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~   55 (69)
                      +..++.+|.|..+|. +++...........+.++...+++.+++.+ +..+.+.
T Consensus       268 l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          268 IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYAL  320 (330)
T ss_dssp             EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred             EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence            455666666777775 455444444333444455555566555544 3334443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=80.51  E-value=5.4  Score=21.98  Aligned_cols=40  Identities=5%  Similarity=0.021  Sum_probs=26.3

Q ss_pred             CCcEEEEECCCCceEEEEeCC------CCCCeEEEEcCC-CcEEEEc
Q 035275            9 DGSVYAWSVRSGKEVASWMSF------DTEPPVIKWTPG-SLMFVTG   48 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~------~~~v~~v~~~~~-~~~~~s~   48 (69)
                      +.+|.+||+.+++....+..+      ......+.+.|+ +..+++.
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd  138 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD  138 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEc
Confidence            468999999888755555321      234578899875 5555663

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=80.25  E-value=5.3  Score=21.73  Aligned_cols=60  Identities=15%  Similarity=-0.023  Sum_probs=34.4

Q ss_pred             EEEEeCCC--cEEEEECCCCceEEEEeCCCCCC-eEEEEcCCCcEEEEcCCcEEEEcCCCCCcC
Q 035275            3 VISGSGDG--SVYAWSVRSGKEVASWMSFDTEP-PVIKWTPGSLMFVTGSSELSFWIPDLSKLG   63 (69)
Q Consensus         3 ~~s~~~d~--~v~~wd~~~~~~~~~~~~~~~~v-~~v~~~~~~~~~~s~~~~~~~~~~~~~~~~   63 (69)
                      +.|++.+|  .|...|+.+++.+.......... ..+.+.. ..++...-.+-.++.+|..+++
T Consensus        34 yestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           34 YESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             EEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTE
T ss_pred             EEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCc
Confidence            45555544  79999999998777665443322 2344443 3344444445555556655544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=80.15  E-value=8.1  Score=23.77  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSF   29 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~   29 (69)
                      .++.++.|+.+..||..+++.+..+...
T Consensus       471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          471 LVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEECCcccchhhhhhcChhheEecCC
Confidence            5778889999999999999988777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	69
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 5e-05
 Identities = 8/49 (16%), Positives = 14/49 (28%)

Query: 2   FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 50
            +++G  D +   W              D     +  T   +   TGS 
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (80), Expect = 1e-04
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 2   FVISGSGDGSVYAWSVRSGKEVASWMSFDTE------PPVIKWTPGSLMFVTGSSELSFW 55
           +++SGS D  V  W  +SG  +                      P   +F TGS +    
Sbjct: 322 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 381

Query: 56  IPDLSKL 62
           I    K+
Sbjct: 382 IWKYKKI 388

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 1e-04
 Identities = 8/49 (16%), Positives = 23/49 (46%)

Query: 2   FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 50
           F++S + D ++  W  ++ + + +  + +     + +   +   VTGS 
Sbjct: 261 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.6 bits (70), Expect = 0.003
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 2   FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 61
           F++SGS D ++  W V +G  + + +  D     + +  G    ++ + + +  + D   
Sbjct: 219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.0 bits (73), Expect = 0.001
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 2   FVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD 58
            + S S D ++  W+V + K   +  +    E   +         V+ S+   ++F  P+
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (69), Expect = 0.004
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 2   FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP-----VIKWTPGSLMFVTGSS 50
           FVI+ S DG+V  W +++G+ + + ++ ++         I+ +   L+   GS 
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.44
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.43
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.4
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.37
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.32
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.31
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.27
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.25
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.25
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.21
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.21
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.16
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.16
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.14
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.14
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.12
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.1
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.06
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.04
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.95
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.78
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.77
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.76
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	98.76
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.74
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.64
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.55
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.53
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.34
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.26
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.24
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.06
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.98
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.25
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.19
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.15
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.22
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.14
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	92.85
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	89.31
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	89.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	88.42
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	87.48
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.43
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	86.54
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.32
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	85.3
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	84.77
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	83.77
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.37
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.29

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=2.3e-13  Score=72.28  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=48.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~   55 (69)
                      +++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++..+++++  +.+++|
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            3689999999999999999998899999999999999999998888874  457776

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.8e-13  Score=71.72  Aligned_cols=55  Identities=16%  Similarity=0.389  Sum_probs=48.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFW   55 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~   55 (69)
                      ++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.++++++.  .+++|
T Consensus       260 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         260 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            36899999999999999999888899999999999999999988888754  46666

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=2.1e-12  Score=68.55  Aligned_cols=59  Identities=19%  Similarity=0.339  Sum_probs=49.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDLS   60 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~~   60 (69)
                      ++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .++++  |..+.+|..+..
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccccc
Confidence            479999999999999999999889999999999999999875 45555  556888865543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=6.1e-13  Score=72.16  Aligned_cols=61  Identities=25%  Similarity=0.347  Sum_probs=48.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEE------cCCCcEEEEcCCcEEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW------TPGSLMFVTGSSELSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~------~~~~~~~~s~~~~~~~~~~~~~~   61 (69)
                      ++|++|+.||.|++||+.+++.+..+.+|.+.|.++++      +|++.++++++.+..+.+|++++
T Consensus       321 ~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            36899999999999999999988999999999999876      46788899885554444444443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1e-11  Score=64.37  Aligned_cols=57  Identities=14%  Similarity=0.278  Sum_probs=46.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~   59 (69)
                      ++|+||+.||.|++||+.+++.+..+.+|.+.|.+++|++  ..++++  |..+.+|....
T Consensus        26 ~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~--~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          26 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--SEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc--ceeeccccccccccccccc
Confidence            4799999999999999999998889999999999998754  466766  45577776543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=6.4e-12  Score=66.60  Aligned_cols=58  Identities=16%  Similarity=0.199  Sum_probs=50.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      ++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++..+++++.  .+.+|...
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             CEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            47999999999999999999888889999999999999999998888744  46666543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.3e-11  Score=64.16  Aligned_cols=59  Identities=25%  Similarity=0.320  Sum_probs=46.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE-----eCCCCCCeEEEEcCCCcEEEEcCCc------EEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW-----MSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~~~s~~~~------~~~~~~~~   59 (69)
                      +++++|+.||.|++||+.+++.+..+     .+|.+.|.+++|+|++.++++++.+      +.+|.+|.
T Consensus       271 ~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            36899999999999999999876665     2577789999999999999987432      45555543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.1e-11  Score=63.20  Aligned_cols=57  Identities=19%  Similarity=0.386  Sum_probs=47.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~~   59 (69)
                      ++|+||+.||.|++||+.+++.+..+.+|.+.|.++.|+|+  .++++  |..+.+|....
T Consensus        28 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccc
Confidence            47999999999999999999988899999999999999986  55555  55677776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.25  E-value=7e-11  Score=62.27  Aligned_cols=59  Identities=17%  Similarity=0.212  Sum_probs=48.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~   59 (69)
                      ++|++|+.||.|++||+.+++....+ ..|...|.+++|+|++.+++++ +..+.+|....
T Consensus        25 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~   85 (299)
T d1nr0a2          25 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG   85 (299)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCC
Confidence            47899999999999999998877666 4789999999999998877665 66688876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=9.6e-12  Score=67.92  Aligned_cols=58  Identities=16%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--eEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGK--EVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~   58 (69)
                      +++++|+.|+.|.+||..+++  ....+.+|.+.|.+++|+|++..+++++  ..+++|.++
T Consensus        20 ~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_          20 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            368899999999999997765  3456789999999999999999988874  458887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=2.3e-11  Score=66.80  Aligned_cols=58  Identities=10%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             CEEEEEeCCCc---EEEEECCCCceEEEE-------------eCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGS---VYAWSVRSGKEVASW-------------MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~---v~~wd~~~~~~~~~~-------------~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      ++|++|+.|+.   |++||+.++..+..+             .+|.+.|.+++|+|++.+++|++.  .+++|..+
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            36899998874   899999988765554             379999999999999999999855  46666543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.4e-10  Score=60.47  Aligned_cols=57  Identities=21%  Similarity=0.434  Sum_probs=48.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      ++++++.|+.|++||..++..+..+.+|...|.++.++|++..+++++.  .+.+|..+
T Consensus       219 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             eeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            5789999999999999999988889999999999999999998888744  46666543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.6e-10  Score=63.42  Aligned_cols=56  Identities=9%  Similarity=0.296  Sum_probs=44.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEE------eCCCCCCeEEEEcCCCcEEEEcCCc-----EEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASW------MSFDTEPPVIKWTPGSLMFVTGSSE-----LSFWIP   57 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~------~~~~~~v~~v~~~~~~~~~~s~~~~-----~~~~~~   57 (69)
                      ++++|+.||.|++||+.+++.+..+      .+|...|.+++|+|++.++++++.+     +++|..
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccc
Confidence            6889999999999999988765443      4688999999999999999998432     555543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.9e-11  Score=63.41  Aligned_cols=55  Identities=16%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~   56 (69)
                      +++++++.||.|++||..+++.+... .|.+.|.+++|+|++.++++++  +.+++|.
T Consensus       278 ~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         278 KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            36899999999999999988866544 4778899999999999888874  4577774

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.7e-10  Score=60.56  Aligned_cols=55  Identities=20%  Similarity=0.390  Sum_probs=43.4

Q ss_pred             EEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~   56 (69)
                      ++++|+.|+.|++||+.++ +.+..+.+|...|.++.|+|++.++.++ |..+++|.
T Consensus       229 ~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence            6899999999999999764 4456668999999999999987644433 45677774

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=7.2e-11  Score=62.02  Aligned_cols=58  Identities=12%  Similarity=0.112  Sum_probs=43.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCce---EEEEeCCCCCCeEEEEcCC-CcEEEEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKE---VASWMSFDTEPPVIKWTPG-SLMFVTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~---~~~~~~~~~~v~~v~~~~~-~~~~~s~~--~~~~~~~~~   58 (69)
                      ++|++|+.||+|++||+.++..   +....+|.++|.+++|+|+ +..+++++  ..+.+|...
T Consensus        24 ~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_          24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            4799999999999999976543   2333579999999999986 45677774  457776554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.10  E-value=5.7e-10  Score=59.92  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCce--EEEEeCCCCCCeEEEEcCCCcEEEEcC----CcEEEEcCCCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGS----SELSFWIPDLSK   61 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~~s~~----~~~~~~~~~~~~   61 (69)
                      +++++|+.||.|++||+.++..  ...+..|.++|.+++|+|++..+++++    ..+.+|.++...
T Consensus        71 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          71 YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccc
Confidence            4789999999999999987653  345788999999999999998877763    237888887543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.06  E-value=3.4e-10  Score=60.81  Aligned_cols=57  Identities=16%  Similarity=0.222  Sum_probs=49.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~~   58 (69)
                      .+++|+.|+.|++||.++++....+..|...|.++.++|++..++++  +..+.+|...
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~  219 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  219 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eecccccccccccccccccccccccccccccccccccCccccccccccccccccccccc
Confidence            47889999999999999988888889999999999999999988887  4557787644

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.04  E-value=4.2e-10  Score=61.33  Aligned_cols=59  Identities=17%  Similarity=0.039  Sum_probs=50.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~~   59 (69)
                      +++++++.|+.|.+||+.++..+..+..|..+|.++.|+|++.++++| |..+.+|.++.
T Consensus       214 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         214 SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             ccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            368899999999999999988888899999999999999999999887 45567776654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.00  E-value=1.1e-09  Score=60.79  Aligned_cols=58  Identities=9%  Similarity=-0.052  Sum_probs=46.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLS   60 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~   60 (69)
                      ++++.++||+|.+||+.+++.+..+..+.. +..++|+|++..+++++.  .+.+|..+..
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~-~~~vafSPDGk~l~~~~~d~~v~vwd~~t~   93 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK   93 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSS-EEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCC-eeEEEECCCCCEEEEEeCCCCEEEEEccCC
Confidence            357788999999999999998888887754 789999999998887744  4666654433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.98  E-value=3.9e-10  Score=59.35  Aligned_cols=59  Identities=24%  Similarity=0.524  Sum_probs=47.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEE---EEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEcCCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVA---SWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDL   59 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~---~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~~~~   59 (69)
                      +++++++.|+.|.+||..++....   .+.+|...|.+++|+|++.++++++  ..+++|..+.
T Consensus       192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCC
Confidence            368999999999999998765432   3467889999999999999998874  4577776543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=9.6e-10  Score=59.10  Aligned_cols=57  Identities=18%  Similarity=0.171  Sum_probs=44.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEc---CCCcEEEEc--CCcEEEEcCC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT---PGSLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~---~~~~~~~s~--~~~~~~~~~~   58 (69)
                      ++++++.|+.|.+||..+++.+..+.+|...+..+.|+   |++..++++  |..+++|..+
T Consensus       220 ~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         220 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             eccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence            68899999999999999998888888888777655554   667777776  4557777544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.2e-09  Score=57.01  Aligned_cols=56  Identities=14%  Similarity=0.162  Sum_probs=45.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      +++++++.|+.+.+||+.++.. .....|...|.+++|+|++..+++++.  .+++|..
T Consensus       237 ~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~  294 (337)
T d1gxra_         237 EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cccceecccccccccccccccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEEC
Confidence            3688999999999999987764 456789999999999999998888754  4666643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=3.4e-09  Score=55.45  Aligned_cols=58  Identities=17%  Similarity=0.422  Sum_probs=45.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEE-EeCCCCCCeEEEEcCC----------CcEEEEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPG----------SLMFVTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~----------~~~~~s~--~~~~~~~~~~   58 (69)
                      ++|++|+.||.|.+||..++..... +..|.++|.+++|+|.          +.+++++  |..+++|..+
T Consensus       175 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             cccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            3689999999999999988875543 5789999999999875          3567777  4557787643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.1e-08  Score=55.06  Aligned_cols=58  Identities=19%  Similarity=0.395  Sum_probs=48.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~   58 (69)
                      +++++|+.||.|++||...++......+|...|.++.+++++..+++++.  .+.+|...
T Consensus       134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             Ccceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecc
Confidence            36899999999999999999888888999999999999999887777644  46666443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.78  E-value=1.6e-08  Score=53.23  Aligned_cols=58  Identities=10%  Similarity=-0.024  Sum_probs=43.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCC--CCCCeEEEEcCCCcEE-EEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMF-VTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~-~s~~--~~~~~~~~~   58 (69)
                      +|+++++.|++|.+||+.+++.+..+..+  ...+..++|+|++..+ +++.  ..+.+|..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~   64 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC
Confidence            37899999999999999999887777543  3456789999998764 5553  446666543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.77  E-value=2.5e-08  Score=52.65  Aligned_cols=58  Identities=14%  Similarity=0.035  Sum_probs=44.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEe-CCCCCCeEEEEcCCCcEE-EEcC--CcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSLMF-VTGS--SELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~-~s~~--~~~~~~~~~   58 (69)
                      +++++++.++.|.+||+.+++.+..+. .+...+.++.|+|++..+ +++.  ..+.+|.+.
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence            478999999999999999998877775 455567899999998754 5553  346666544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.6e-08  Score=51.22  Aligned_cols=52  Identities=15%  Similarity=0.353  Sum_probs=40.1

Q ss_pred             EEEEEeCCCcEEEEECCC---------CceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEE
Q 035275            2 FVISGSGDGSVYAWSVRS---------GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW   55 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~---------~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~   55 (69)
                      ++++|+.||.|++||+..         ...+..+.+|.+.|.+++|++.  .+++++.|  +++|
T Consensus       230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~--~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW  292 (293)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS--CEEECCSSSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC--EEEEEecCCEEEEe
Confidence            689999999999999643         2346678899999999999654  57777555  5555

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.76  E-value=2.4e-08  Score=55.85  Aligned_cols=57  Identities=2%  Similarity=-0.126  Sum_probs=45.8

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~~~~   60 (69)
                      +++.+.||+|.+||..+++.+..+..+. .+..++|+|++..+++++.  .+.+|..+..
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence            5888999999999999999888887664 4789999999998887644  4666655443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=6.2e-09  Score=54.46  Aligned_cols=56  Identities=16%  Similarity=0.389  Sum_probs=39.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIP   57 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~   57 (69)
                      ++|++|+.||.|++||+.+++.+..+..+ .....++|+|++..++++  +....+|..
T Consensus       264 ~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         264 KFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             cEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            36899999999999999998877776433 234566777777666654  444555543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=6.1e-08  Score=50.97  Aligned_cols=53  Identities=15%  Similarity=0.312  Sum_probs=35.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcC--CcEEEEc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWI   56 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~--~~~~~~~   56 (69)
                      .+++++.|+.|++||..++..+..+.+|...|.+++++++  .+++++  +.+++|.
T Consensus       215 ~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~--~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         215 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWD  269 (355)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSS--EEEEECTTSEEEEEE
T ss_pred             eeecccccceEEeeeccccccccccccccccccccccccc--eeeeeeccccccccc
Confidence            4667777778888888777777777777777777777654  455543  3355553

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.7e-07  Score=50.15  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=38.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCC--CeEE--EEcCCCcEEEEc--CCcEEEEc
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTE--PPVI--KWTPGSLMFVTG--SSELSFWI   56 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~--v~~v--~~~~~~~~~~s~--~~~~~~~~   56 (69)
                      ++|++++.|+.|++||+.+++.+..+..|...  +..+  .+.+++ .++++  |..+++|.
T Consensus       264 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYE  324 (325)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEE
Confidence            36899999999999999999887777665543  3333  444444 45555  55688874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.55  E-value=1.5e-07  Score=49.88  Aligned_cols=56  Identities=9%  Similarity=0.029  Sum_probs=41.3

Q ss_pred             EEEEEe-CCC-cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc--EEEEcCC
Q 035275            2 FVISGS-GDG-SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD   58 (69)
Q Consensus         2 ~~~s~~-~d~-~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~--~~~~~~~   58 (69)
                      ++++++ .++ .|.+||..+++ ...+..|.+.+.+++|+|++..+++++.+  +.+|..+
T Consensus        56 ~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             EEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEEEcCCCCEEEEEECCCCc-EEEeeCCCceEEeeeecccccccceecccccccccccc
Confidence            455444 443 68999998776 56778899999999999999988887544  5555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.1e-07  Score=49.04  Aligned_cols=58  Identities=7%  Similarity=0.083  Sum_probs=41.9

Q ss_pred             EEEEeCCCcEEEEECCCCceEEE--EeCCCCCCeEEEEcCCCcEE-EEc--CCcEEEEcCCCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVAS--WMSFDTEPPVIKWTPGSLMF-VTG--SSELSFWIPDLS   60 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~-~s~--~~~~~~~~~~~~   60 (69)
                      ++++++|++|++|++++...+..  ...|.+.+..++|+|++..+ +++  +..+.+|..+..
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            47778999999999976544433  34677889999999999866 444  345777765543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.34  E-value=9.1e-07  Score=45.86  Aligned_cols=55  Identities=20%  Similarity=0.143  Sum_probs=39.6

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEE-EEc--CCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTG--SSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~s~--~~~~~~~~~~   58 (69)
                      +++++.|++|.+||+.+++.+..+.... ....++|+|++..+ +++  +..+.+|...
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            4567788999999999998777765443 35789999998755 554  3456666543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.26  E-value=1.4e-06  Score=45.60  Aligned_cols=48  Identities=4%  Similarity=0.044  Sum_probs=35.9

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCC--cEEEEcC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIP   57 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~--~~~~~~~   57 (69)
                      ++.+.+||+.+++.+..+. +...+.+++|+|++..+++++.  ++.+|..
T Consensus       259 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         259 YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            5789999999988766653 4556789999999988777644  4666543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.24  E-value=5.1e-06  Score=43.86  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=41.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEE
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT   47 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s   47 (69)
                      +++++++.++.+.+|+..+++....+..|...+.+++|+|++..++.
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~  144 (360)
T d1k32a3          98 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY  144 (360)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             cccceeccccccccccccccceeeeeecccccccchhhccceeeeee
Confidence            46889999999999999988877777888888999999999988774

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.06  E-value=2.3e-06  Score=47.16  Aligned_cols=58  Identities=3%  Similarity=-0.039  Sum_probs=38.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEE--Ee---CCCCCCeEEEEcCCCcEEEEc---CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKEVAS--WM---SFDTEPPVIKWTPGSLMFVTG---SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~~~~--~~---~~~~~v~~v~~~~~~~~~~s~---~~~~~~~~~~   58 (69)
                      +++++++.|+.|.+||+.+++....  +.   +|.+.+..+.|+|++..++.+   +..+.+|...
T Consensus        74 k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2          74 RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             CEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC
Confidence            4688999999999999988864332  22   344444556677888865443   3446666543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.98  E-value=7.2e-07  Score=49.75  Aligned_cols=58  Identities=9%  Similarity=-0.071  Sum_probs=38.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCce--EEEEe---CCCCCCeEEEEcCCCcEE-EEc--CCcEEEEcCC
Q 035275            1 MFVISGSGDGSVYAWSVRSGKE--VASWM---SFDTEPPVIKWTPGSLMF-VTG--SSELSFWIPD   58 (69)
Q Consensus         1 ~~~~s~~~d~~v~~wd~~~~~~--~~~~~---~~~~~v~~v~~~~~~~~~-~s~--~~~~~~~~~~   58 (69)
                      +++++++.|+.+.+||+.+++.  ...+.   .|.+.+....|+|++..+ +++  +..+.+|...
T Consensus        74 ~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          74 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc
Confidence            5788999999999999987653  23332   343444445567888764 555  4457776544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.97  E-value=9e-06  Score=42.60  Aligned_cols=48  Identities=10%  Similarity=0.157  Sum_probs=35.3

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc--CCcEEEEcC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG--SSELSFWIP   57 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~--~~~~~~~~~   57 (69)
                      ++.+.+||..+++.+..+. +...+.+++|+|++..++++  +.++.+|..
T Consensus       271 ~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         271 LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            3579999999888666554 34467899999999887776  445666644

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.94  E-value=4.4e-05  Score=40.72  Aligned_cols=53  Identities=8%  Similarity=0.040  Sum_probs=37.0

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc--EEEEcCCc--EEEEc
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSE--LSFWI   56 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~s~~~~--~~~~~   56 (69)
                      +++...++.+.+||..+++.+..+. +...+..+.|+|++.  ++++++.+  +.+|.
T Consensus       291 ~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             EEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            3455666789999999888766554 445678999999986  45565444  55554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.86  E-value=3.6e-05  Score=39.63  Aligned_cols=50  Identities=18%  Similarity=0.039  Sum_probs=35.7

Q ss_pred             CCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcE-EEEc--CCcEEEEcCC
Q 035275            8 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM-FVTG--SSELSFWIPD   58 (69)
Q Consensus         8 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~~s~--~~~~~~~~~~   58 (69)
                      .++.|.+||..+++....+..+ ..+.+++|+|++.. ++++  +..+.+|...
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            3467999999998876666544 34689999999875 4565  4457777544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0015  Score=33.84  Aligned_cols=56  Identities=13%  Similarity=0.093  Sum_probs=35.4

Q ss_pred             EE-EEEeCCCcEEEEECCCCceE---EEEeCCCCCCeEEEEcCCCcEEEEcC---CcEEEEcC
Q 035275            2 FV-ISGSGDGSVYAWSVRSGKEV---ASWMSFDTEPPVIKWTPGSLMFVTGS---SELSFWIP   57 (69)
Q Consensus         2 ~~-~s~~~d~~v~~wd~~~~~~~---~~~~~~~~~v~~v~~~~~~~~~~s~~---~~~~~~~~   57 (69)
                      +| +++..|+.|.+|++......   .....+...+..++|+|++..+++++   ..+.+|..
T Consensus        50 ~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          50 YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            45 55556889999999765322   22233444567899999998776652   23555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.25  E-value=0.00091  Score=36.91  Aligned_cols=41  Identities=7%  Similarity=0.158  Sum_probs=31.7

Q ss_pred             CCCcEEEEECCCCceEEEEe-----CCCCCCeEEEEcCCCcEEEEc
Q 035275            8 GDGSVYAWSVRSGKEVASWM-----SFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         8 ~d~~v~~wd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      .++.+.+||..+++....+.     .|...+.+++|+|++..++.+
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~   79 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE   79 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEE
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEE
Confidence            56789999999987654443     344678999999999987765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.19  E-value=0.00056  Score=37.78  Aligned_cols=49  Identities=8%  Similarity=0.154  Sum_probs=37.4

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc-CCcEEEEcCC
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG-SSELSFWIPD   58 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~-~~~~~~~~~~   58 (69)
                      ++.+.+||+.++. +..+..+.+.+..+.|+|++..++.. +.++.+|...
T Consensus        91 ~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~  140 (470)
T d2bgra1          91 TASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP  140 (470)
T ss_dssp             EEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESST
T ss_pred             CceEEEEECCCCc-ccccccCCccccccccccCcceeeEeecccceEEECC
Confidence            4567899998776 56677888889999999999888865 5556665433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.15  E-value=0.00024  Score=37.44  Aligned_cols=45  Identities=13%  Similarity=0.143  Sum_probs=31.0

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc--EEEEcC--CcEEEEc
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGS--SELSFWI   56 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~s~~--~~~~~~~   56 (69)
                      .|.+||..+++.+..+... ..+.+++|+|++.  +++++.  ..+.+|.
T Consensus       281 ~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHD  329 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence            5889999988876666432 3357899999985  556664  3455554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.90  E-value=0.002  Score=33.73  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP   40 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~   40 (69)
                      +++++..|+.|.+||..+++.+..+..+...-..+.+.+
T Consensus       315 l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         315 LYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence            356777889999999999998888866644334554443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.90  E-value=0.0026  Score=33.64  Aligned_cols=38  Identities=13%  Similarity=0.217  Sum_probs=30.5

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP   40 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~   40 (69)
                      +++++.|+.|.+||..+++.+..+..+......+++.+
T Consensus       334 ~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         334 YALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             EEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            56788999999999999998888877766556666543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.57  E-value=0.0057  Score=32.56  Aligned_cols=56  Identities=14%  Similarity=0.306  Sum_probs=37.7

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEcCCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~s~~~~~~~~~~~   58 (69)
                      +++....+.|.++|.+.+.....+..+.....+++|.|++. ++++...+-++|.++
T Consensus       240 yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            34445567899998877665555555556678899999875 667765555666544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.22  E-value=0.0012  Score=35.35  Aligned_cols=49  Identities=14%  Similarity=-0.087  Sum_probs=32.6

Q ss_pred             CCCcEEEEECCCCceEEEEeCCCC-------CCeEEEEcCCCcEEEEc---CCcEEEEc
Q 035275            8 GDGSVYAWSVRSGKEVASWMSFDT-------EPPVIKWTPGSLMFVTG---SSELSFWI   56 (69)
Q Consensus         8 ~d~~v~~wd~~~~~~~~~~~~~~~-------~v~~v~~~~~~~~~~s~---~~~~~~~~   56 (69)
                      .|+.|.+||..+++....+..+..       ....+.|+|++..++.+   +..+.+|.
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d  152 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS  152 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEE
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence            456799999999987766654322       22468899999766544   33455554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.07  E-value=0.0018  Score=34.56  Aligned_cols=46  Identities=7%  Similarity=0.098  Sum_probs=30.8

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCc--EEEEcC--CcEEEEcC
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGS--SELSFWIP   57 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~s~~--~~~~~~~~   57 (69)
                      .|.+||..+++.+..+.. ...+..+.|+|++.  ++++..  ..+.+|..
T Consensus       295 ~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         295 NTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            478899998886655542 23467899999975  456653  44666643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.14  E-value=0.13  Score=25.74  Aligned_cols=37  Identities=11%  Similarity=0.101  Sum_probs=29.0

Q ss_pred             CCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEE
Q 035275            9 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV   46 (69)
Q Consensus         9 d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~   46 (69)
                      ++.|.+.|+..++ ...+..+.+......|||++..++
T Consensus        20 ~~dl~~~d~~~g~-~~~Lt~~~~~~~~p~~SPDG~~ia   56 (281)
T d1k32a2          20 CDDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIA   56 (281)
T ss_dssp             TTEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEE
T ss_pred             CCcEEEEECCCCC-EEEEecCCCcccCEEECCCCCEEE
Confidence            4678888998776 566777777778889999998776

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=92.85  E-value=0.032  Score=31.46  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEE
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASW   26 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~   26 (69)
                      ++|++.+|.|.+|++.+++.+..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~I   37 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRI   37 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEE
Confidence            688999999999999988877765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=89.31  E-value=0.76  Score=23.67  Aligned_cols=44  Identities=11%  Similarity=0.219  Sum_probs=27.7

Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            3 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      +++...+++|..++.. +. ...+....+.+.+++|.|++.++++.
T Consensus        42 ~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~   85 (302)
T d2p4oa1          42 FVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATG   85 (302)
T ss_dssp             EEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEE
T ss_pred             EEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEe
Confidence            4455555566655543 22 33344455667899999999988875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.7  Score=22.88  Aligned_cols=22  Identities=14%  Similarity=0.087  Sum_probs=15.2

Q ss_pred             EEeCCCCCCeEEEEcCCCcEEE
Q 035275           25 SWMSFDTEPPVIKWTPGSLMFV   46 (69)
Q Consensus        25 ~~~~~~~~v~~v~~~~~~~~~~   46 (69)
                      ....+.+......|+|++..++
T Consensus       208 ~~~~~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         208 QVLSSTFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             EECCCSSSCEEEEECTTSSEEE
T ss_pred             eEeecCccccceEECCCCCEEE
Confidence            3334455567888999998665

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.42  E-value=0.83  Score=23.00  Aligned_cols=48  Identities=17%  Similarity=0.149  Sum_probs=27.4

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEcCCc
Q 035275            4 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE   51 (69)
Q Consensus         4 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~~~~   51 (69)
                      ++...++.|..++.+...........-.....+++.+++.++++....
T Consensus       155 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         155 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             eeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCC
Confidence            344445567777765443222222333445788898988888776443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.48  E-value=1.1  Score=23.37  Aligned_cols=41  Identities=17%  Similarity=0.297  Sum_probs=24.6

Q ss_pred             CCCcEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEEc
Q 035275            8 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG   48 (69)
Q Consensus         8 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s~   48 (69)
                      .+++|..++.+.+...............+++.+++.++++.
T Consensus        59 ~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~   99 (319)
T d2dg1a1          59 FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCY   99 (319)
T ss_dssp             TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEe
Confidence            44555555554443333333444556789999999887764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.43  E-value=1.5  Score=25.01  Aligned_cols=42  Identities=31%  Similarity=0.562  Sum_probs=29.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CeEEEEcCCCc
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSL   43 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~~~~~~-v~~v~~~~~~~   43 (69)
                      .++.|+.||.++.+|..+|+.+.+.....+. -.=+.|..++.
T Consensus       499 lVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         499 LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             eEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            4678999999999999999999887432211 11245655664

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.54  E-value=0.75  Score=22.75  Aligned_cols=36  Identities=6%  Similarity=-0.070  Sum_probs=24.5

Q ss_pred             cEEEEECCCCceEEEEeCCCCCCeEEEEcCCCcEEEE
Q 035275           11 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT   47 (69)
Q Consensus        11 ~v~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~s   47 (69)
                      .|.+.|.+-.. ...+..+...+...+|||+|..++-
T Consensus        20 ~l~i~d~dG~~-~~~l~~~~~~~~sP~wSPDGk~IAf   55 (269)
T d2hqsa1          20 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAY   55 (269)
T ss_dssp             EEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCC-cEEEecCCCceeeeEECCCCCEEEE
Confidence            47777875433 4444444566778899999988774

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=86.32  E-value=1.8  Score=24.67  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=22.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM   27 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~   27 (69)
                      .++.|+.||.++.+|..+|+.+....
T Consensus       490 lVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         490 VVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEeEEEE
Confidence            56788999999999999999988764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.30  E-value=2.1  Score=24.47  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=22.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM   27 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~   27 (69)
                      .++.|+.||.++.+|.++|+.+.+..
T Consensus       477 lVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEE
Confidence            46779999999999999999998774

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=84.77  E-value=1.5  Score=22.46  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             EEEEeCCCcEEEEECCCCc-eEEEE--eCCCCCCeEEEEcCCCcEEEEcCCcEEEEcCC
Q 035275            3 VISGSGDGSVYAWSVRSGK-EVASW--MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD   58 (69)
Q Consensus         3 ~~s~~~d~~v~~wd~~~~~-~~~~~--~~~~~~v~~v~~~~~~~~~~s~~~~~~~~~~~   58 (69)
                      +++...++.+..++..... ....+  .........+.+.+++.++++.+....+|.++
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          82 VATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             EEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeee
Confidence            4444455555555543321 12222  22334457888899998888765554555443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.77  E-value=1.6  Score=21.88  Aligned_cols=25  Identities=8%  Similarity=0.102  Sum_probs=16.6

Q ss_pred             CCeEEEEcCCCcEEEEcCCcEEEEc
Q 035275           32 EPPVIKWTPGSLMFVTGSSELSFWI   56 (69)
Q Consensus        32 ~v~~v~~~~~~~~~~s~~~~~~~~~   56 (69)
                      ....+++.+++.++++...+-+|+.
T Consensus       225 ~P~~i~~d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         225 TPLAVAVDSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             CeEEEEEeCCCCEEEEECCCCEEEE
Confidence            3468888888888777544445543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.37  E-value=3  Score=24.00  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=22.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM   27 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~   27 (69)
                      .++.|+.||.++.+|..+|+.+.+..
T Consensus       486 lVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         486 LVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEE
Confidence            46779999999999999999998874

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=81.29  E-value=3.2  Score=23.59  Aligned_cols=26  Identities=23%  Similarity=0.482  Sum_probs=22.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe
Q 035275            2 FVISGSGDGSVYAWSVRSGKEVASWM   27 (69)
Q Consensus         2 ~~~s~~~d~~v~~wd~~~~~~~~~~~   27 (69)
                      .++.|+.||.++.+|.++|+.+.+..
T Consensus       471 lVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         471 LVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCcEEEEECCCCcEeEEEE
Confidence            46788999999999999999998874