Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 67
PLN02624 474
PLN02624, PLN02624, ornithine-delta-aminotransfera
9e-12 TIGR01885 401
TIGR01885, Orn_aminotrans, ornithine aminotransfer
2e-10 PRK04073 396
PRK04073, rocD, ornithine--oxo-acid transaminase;
3e-10 COG4992 404
COG4992, ArgD, Ornithine/acetylornithine aminotran
5e-10 PTZ00125 400
PTZ00125, PTZ00125, ornithine aminotransferase-lik
1e-08 PRK02627 396
PRK02627, PRK02627, acetylornithine aminotransfera
4e-08 cd00610 413
cd00610, OAT_like, Acetyl ornithine aminotransfera
5e-08 COG0161 449
COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon
3e-07 pfam00202 338
pfam00202, Aminotran_3, Aminotransferase class-III
3e-07 COG0160 447
COG0160, GabT, 4-aminobutyrate aminotransferase an
3e-06 PRK09221 445
PRK09221, PRK09221, beta alanine--pyruvate transam
3e-06 PRK07480 456
PRK07480, PRK07480, putative aminotransferase; Val
4e-06 PRK08117 433
PRK08117, PRK08117, 4-aminobutyrate aminotransfera
4e-06 PRK00854 401
PRK00854, rocD, ornithine--oxo-acid transaminase;
1e-05 PRK03244 398
PRK03244, argD, acetylornithine aminotransferase;
1e-05 TIGR00700 420
TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf
1e-05 TIGR00707 379
TIGR00707, argD, transaminase, acetylornithine/suc
2e-05 PRK11522 459
PRK11522, PRK11522, putrescine--2-oxoglutarate ami
3e-05 PRK08593 445
PRK08593, PRK08593, 4-aminobutyrate aminotransfera
4e-05 PRK09792 421
PRK09792, PRK09792, 4-aminobutyrate transaminase;
4e-05 PRK07678 451
PRK07678, PRK07678, aminotransferase; Validated
4e-05 PRK06777 421
PRK06777, PRK06777, 4-aminobutyrate aminotransfera
6e-05 PRK06058 443
PRK06058, PRK06058, 4-aminobutyrate aminotransfera
6e-05 PRK05964 423
PRK05964, PRK05964, adenosylmethionine--8-amino-7-
7e-05 TIGR00508 417
TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon
8e-05 PRK07495 425
PRK07495, PRK07495, 4-aminobutyrate aminotransfera
8e-05 PRK12403 460
PRK12403, PRK12403, putative aminotransferase; Pro
8e-05 PRK06541 460
PRK06541, PRK06541, hypothetical protein; Provisio
9e-05 PRK06062 451
PRK06062, PRK06062, hypothetical protein; Provisio
1e-04 PRK07030 466
PRK07030, PRK07030, adenosylmethionine--8-amino-7-
2e-04 PRK06148 1013
PRK06148, PRK06148, hypothetical protein; Provisio
2e-04 PRK08088 425
PRK08088, PRK08088, 4-aminobutyrate aminotransfera
2e-04 PRK01278 389
PRK01278, argD, acetylornithine transaminase prote
3e-04 PRK07986 428
PRK07986, PRK07986, adenosylmethionine--8-amino-7-
5e-04 TIGR03372 442
TIGR03372, putres_am_tran, putrescine aminotransfe
8e-04 PRK13360 442
PRK13360, PRK13360, omega amino acid--pyruvate tra
0.001 PRK08742 472
PRK08742, PRK08742, adenosylmethionine--8-amino-7-
0.001 PRK06931 459
PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat
0.001 PRK06918 451
PRK06918, PRK06918, 4-aminobutyrate aminotransfera
0.001 PRK07481 449
PRK07481, PRK07481, hypothetical protein; Provisio
0.002 PRK05093 403
PRK05093, argD, bifunctional N-succinyldiaminopime
0.002 PRK05769 441
PRK05769, PRK05769, 4-aminobutyrate aminotransfera
0.003 PRK06082 459
PRK06082, PRK06082, 4-aminobutyrate aminotransfera
0.003
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase
Back Hide alignment and domain information
Score = 57.5 bits (139), Expect = 9e-12
Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
Query: 18 VLLSILLNQ--STFDGNPLATAVAIASLNVIRDEKLAERS 55
V+L I + STF GNPLA+AVA+A+L V++DEKLAERS
Sbjct: 311 VMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERS 350
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase
Back Show alignment and domain information
Score = 53.9 bits (130), Expect = 2e-10
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSR 56
ST+ GNPLA AVA+A+L V+ +EKLAE +
Sbjct: 284 STYGGNPLACAVAVAALEVLEEEKLAENAE 313
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional
Back Show alignment and domain information
Score = 53.6 bits (129), Expect = 3e-10
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
STF GNPLA AV+IA+L V+ +EKL ERS
Sbjct: 284 STFGGNPLACAVSIAALEVLEEEKLPERS 312
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Back Show alignment and domain information
Score = 52.6 bits (127), Expect = 5e-10
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRA 57
STF GNPLA AVA+A L V+ +E L E R
Sbjct: 281 STFGGNPLACAVALAVLEVLLEEGLLENVRE 311
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional
Back Show alignment and domain information
Score = 48.9 bits (117), Expect = 1e-08
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERS 55
ST+ GNPLA AVA+ +L V+++EKLAE +
Sbjct: 276 STYGGNPLACAVAVEALEVLKEEKLAENA 304
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional
Back Show alignment and domain information
Score = 47.0 bits (113), Expect = 4e-08
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEER 67
STF GNPLA A A+A + +I +E L E + E YL +
Sbjct: 279 STFGGNPLACAAALAVIEIIEEEGLLENAA--EVGEYLRAK 317
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family
Back Show alignment and domain information
Score = 46.8 bits (112), Expect = 5e-08
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEER 67
TF GNPLA A A+A L V+ +E L E + YL ER
Sbjct: 290 GTFGGNPLACAAALAVLEVLEEEGLLENAAELGE--YLRER 328
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Back Show alignment and domain information
Score = 44.8 bits (107), Expect = 3e-07
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEER 67
T+ GNPLA A A+A+L+++ +E L ER YL+
Sbjct: 319 TYSGNPLACAAALANLDILEEEDLLERVAEIGA--YLQAG 356
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III
Back Show alignment and domain information
Score = 44.6 bits (106), Expect = 3e-07
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 13 RTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRA 57
++M + TF GNPLA A A+A L++I DE L + ++
Sbjct: 260 TAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQNAQE 304
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Back Show alignment and domain information
Score = 41.8 bits (99), Expect = 3e-06
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRA 57
TF GNP+A A A+A L+VI +E L ER+
Sbjct: 318 GTFGGNPVACAAALAVLDVIEEENLLERAAE 348
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional
Back Show alignment and domain information
Score = 41.8 bits (99), Expect = 3e-06
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEE 66
T+ +P+A A +A+L++ R+E L ER+ Y E+
Sbjct: 324 TYSAHPVACAAGLATLDIYREEDLFERAAELAP--YFED 360
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated
Back Show alignment and domain information
Score = 41.8 bits (99), Expect = 4e-06
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEER 67
T+ G+P+A AVA+A+L ++RDE + ER R G YL++R
Sbjct: 322 TYSGHPVAAAVALANLRILRDEGIVERVRDDTG-PYLQKR 360
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Score = 41.6 bits (98), Expect = 4e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRA 57
TF GNP+A A A+A+L VI++EKL + +
Sbjct: 305 TFGGNPVACAAALATLEVIKEEKLLDNANE 334
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed
Back Show alignment and domain information
Score = 40.5 bits (95), Expect = 1e-05
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLE 65
STF GNPLA AVA A+L V+ +E + E + A G ++LE
Sbjct: 285 STFGGNPLACAVARAALKVLTEEGMIENA-AEMGAYFLE 322
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional
Back Show alignment and domain information
Score = 40.3 bits (95), Expect = 1e-05
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRA 57
STF GNP+A A A+A L+ I E L E +
Sbjct: 280 STFGGNPVACAAALAVLDTIASEGLLENAER 310
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type
Back Show alignment and domain information
Score = 40.2 bits (94), Expect = 1e-05
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGI 61
T+ GNPLA A A+A L +I E L ER+R +
Sbjct: 295 TYAGNPLACAAALAVLAIIESEGLIERARQIGRL 328
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family
Back Show alignment and domain information
Score = 39.7 bits (93), Expect = 2e-05
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRA 57
STF GNPLA A A+A L VI E+L E +
Sbjct: 267 STFGGNPLACAAALAVLEVIEKERLLENVKE 297
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional
Back Show alignment and domain information
Score = 39.0 bits (91), Expect = 3e-05
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 24 LNQSTFDGNPLATAVAIASLNVIRDEKLAERSR 56
L+ +TF GNPLA A A+A++NV+ ++ L ++
Sbjct: 328 LHTTTFGGNPLACAAALATINVLLEQNLPAQAE 360
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Score = 38.9 bits (91), Expect = 4e-05
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 RTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSR 56
R ++M L + T NP++ A A+A++++I DE L +RS
Sbjct: 290 RKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSA 333
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional
Back Show alignment and domain information
Score = 38.9 bits (90), Expect = 4e-05
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSR 56
T+ GNPLA A A A LN+I E L ER+
Sbjct: 296 TYAGNPLAVAAAHAVLNIIDKESLCERAN 324
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated
Back Show alignment and domain information
Score = 38.8 bits (91), Expect = 4e-05
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEE 66
+TF GNP A A+A+ +L ++ +E L ERS G LE+
Sbjct: 317 NTFGGNPAACALALKNLEIMENENLIERSAQL-GELLLEQ 355
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Score = 38.3 bits (89), Expect = 6e-05
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLE 65
T+ GNPLA A A+A L+VI +EKL +R+ G H +E
Sbjct: 296 TYAGNPLAVAAALAVLDVIAEEKLCQRALIL-GAHLVE 332
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Score = 38.5 bits (90), Expect = 6e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGI 61
T+ GNP+A A A+A++ I ++ L R+R E +
Sbjct: 317 TYGGNPVACAAALAAIETIEEDDLVARARQIEAL 350
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Score = 37.9 bits (89), Expect = 7e-05
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 23 LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEER 67
++ ++ NPLA A A ASL++ DE + ER A L E
Sbjct: 300 FMHSPSYTANPLACAAANASLDLFEDEPVLERVAALS--AGLAEG 342
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase
Back Show alignment and domain information
Score = 37.9 bits (89), Expect = 8e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62
T+ GNPLA A A+ASL+++ +E E+ E
Sbjct: 301 TYTGNPLACAAALASLDLLEEEDWLEQVARIEAQL 335
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Score = 37.8 bits (88), Expect = 8e-05
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERS 55
T+ GNPL A A A L+VI +E L ER+
Sbjct: 296 TYGGNPLGIAAAHAVLDVIEEEDLCERA 323
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional
Back Show alignment and domain information
Score = 37.9 bits (88), Expect = 8e-05
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSR 56
T+ G+P+A AVAIA+L +RDE + R +
Sbjct: 325 TYSGHPVAAAVAIANLKALRDEGVVTRVK 353
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 37.7 bits (88), Expect = 9e-05
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRAFEG 60
TF G+P++ AVA+A+L++ E L + R E
Sbjct: 323 YTFGGHPVSAAVALANLDIFEREGLLDHVRDNEP 356
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 37.7 bits (88), Expect = 1e-04
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSR 56
T+ G+PLA A A+A++N + +E + E +
Sbjct: 315 TYSGHPLACAAAVATINAMEEEGIVENAA 343
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Score = 37.0 bits (86), Expect = 2e-04
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 20 LSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRA 57
L L+ ++ GNPLA A A+A+L++ + + E +RA
Sbjct: 313 LRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRA 350
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 36.9 bits (86), Expect = 2e-04
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYL 64
+TF GNP++ A+ +A L++I DE L + A E +YL
Sbjct: 883 NTFGGNPVSCAIGLAVLDIIEDEDL--QRNALEIGNYL 918
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated
Back Show alignment and domain information
Score = 36.7 bits (85), Expect = 2e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRA 57
T+ GNP+A A A+A L V E L +++ A
Sbjct: 297 TYAGNPIACAAALAVLKVFEQENLLQKANA 326
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional
Back Show alignment and domain information
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 27 STFDGNPLATAVAIASLNVI 46
ST+ GNPLA AV A L+VI
Sbjct: 272 STYGGNPLAMAVGNAVLDVI 291
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Back Show alignment and domain information
Score = 35.8 bits (83), Expect = 5e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRAFE 59
TF GNPLA AVA ASL+++ ++ A E
Sbjct: 309 TFMGNPLACAVANASLSLLESGDWQQQVAAIE 340
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase
Back Show alignment and domain information
Score = 35.4 bits (81), Expect = 8e-04
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 23 LLNQSTFDGNPLATAVAIASLNVIRDEKLAERS 55
L+ +TF GNPLA A A+A++N + ++ L ++
Sbjct: 320 FLHTTTFGGNPLACAAALATINELLEKNLPAQA 352
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional
Back Show alignment and domain information
Score = 34.7 bits (80), Expect = 0.001
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERS 55
T+ G+PLA A A+A+L++ E L R+
Sbjct: 321 TYSGHPLACAAALATLDLYEREGLLTRA 348
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Score = 34.6 bits (79), Expect = 0.001
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 23 LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSR 56
L+ ++ GNPLA A A+A+L++ D+ + R++
Sbjct: 337 FLHSHSYTGNPLACAAALATLDIFADDDVIARNQ 370
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Back Show alignment and domain information
Score = 34.7 bits (80), Expect = 0.001
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSRA 57
TF GN LA A + +L ++++E LA+ +
Sbjct: 322 TFRGNQLAMATGLTTLKILKEENLAQNAAE 351
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed
Back Show alignment and domain information
Score = 34.4 bits (79), Expect = 0.001
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERSR 56
T+ G+PL A A+A L++I E L +R+
Sbjct: 317 TYAGSPLGCAAALAVLDIIEKENLNDRAI 345
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 34.3 bits (79), Expect = 0.002
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 28 TFDGNPLATAVAIASLNVIRDEKLAERS-----RAFEGIHYLEER 67
T+ G+P+A A A+A+L+++ E L + EG+ L+ER
Sbjct: 319 TYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKER 363
>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed
Back Show alignment and domain information
Score = 34.1 bits (79), Expect = 0.002
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKL----AERSRAF 58
ST+ GNPLA AVA A ++I ++ R + F
Sbjct: 281 STYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRF 316
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 27 STFDGNPLATAVAIASLNVIRDEKLAERSR 56
+TF GNP+A A A+A+L + +E L E ++
Sbjct: 317 NTFGGNPVAAAAALATLEEL-EEGLLENAQ 345
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Score = 33.5 bits (77), Expect = 0.003
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 13 RTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYLEE 66
+ K I L T + +PL A A+A++ VI E L E+ +A + E
Sbjct: 312 KDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKA-DSQFMRER 364
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
67
COG4992 404
ArgD Ornithine/acetylornithine aminotransferase [A
99.56 KOG1402 427
consensus Ornithine aminotransferase [Amino acid t
99.53 COG0160 447
GabT 4-aminobutyrate aminotransferase and related
99.47 COG0161 449
BioA Adenosylmethionine-8-amino-7-oxononanoate ami
99.39 KOG1404 442
consensus Alanine-glyoxylate aminotransferase AGT2
99.37 PRK05965 459
hypothetical protein; Provisional
99.34 PRK07030 466
adenosylmethionine--8-amino-7-oxononanoate transam
99.34 PRK07483 443
hypothetical protein; Provisional
99.33 PRK06943 453
adenosylmethionine--8-amino-7-oxononanoate transam
99.33 PRK07482 461
hypothetical protein; Provisional
99.33 TIGR03372 442
putres_am_tran putrescine aminotransferase. Member
99.33 PRK07481 449
hypothetical protein; Provisional
99.31 PRK08742 472
adenosylmethionine--8-amino-7-oxononanoate transam
99.31 PRK07678 451
aminotransferase; Validated
99.31 PRK06938 464
diaminobutyrate--2-oxoglutarate aminotransferase;
99.28 PRK06058 443
4-aminobutyrate aminotransferase; Provisional
99.27 PRK12389 428
glutamate-1-semialdehyde aminotransferase; Provisi
99.27 PRK06931 459
diaminobutyrate--2-oxoglutarate aminotransferase;
99.26 PRK07036 466
hypothetical protein; Provisional
99.26 PRK06148 1013
hypothetical protein; Provisional
99.26 PLN02760 504
4-aminobutyrate:pyruvate transaminase
99.26 PF00202 339
Aminotran_3: Aminotransferase class-III; InterPro:
99.25 PRK11522 459
putrescine--2-oxoglutarate aminotransferase; Provi
99.25 PRK07480 456
putative aminotransferase; Validated
99.24 PRK06062 451
hypothetical protein; Provisional
99.22 KOG1403 452
consensus Predicted alanine-glyoxylate aminotransf
99.21 PRK06105 460
aminotransferase; Provisional
99.2 PRK06916 460
adenosylmethionine--8-amino-7-oxononanoate transam
99.19 PRK06917 447
hypothetical protein; Provisional
99.18 PRK07046 453
aminotransferase; Validated
99.18 PRK12403 460
putative aminotransferase; Provisional
99.17 PRK07986 428
adenosylmethionine--8-amino-7-oxononanoate transam
99.16 PRK06149 972
hypothetical protein; Provisional
99.13 PLN02482 474
glutamate-1-semialdehyde 2,1-aminomutase
99.12 KOG1401 433
consensus Acetylornithine aminotransferase [Amino
99.1 TIGR00709 442
dat 2,4-diaminobutyrate 4-transaminases. This fami
99.09 PRK08593 445
4-aminobutyrate aminotransferase; Provisional
99.08 PRK06173 429
adenosylmethionine--8-amino-7-oxononanoate transam
99.08 PRK13360 442
omega amino acid--pyruvate transaminase; Provision
99.07 PRK05630 422
adenosylmethionine--8-amino-7-oxononanoate transam
99.07 PRK03715 395
argD acetylornithine transaminase protein; Provisi
99.06 PRK09792 421
4-aminobutyrate transaminase; Provisional
99.06 PRK06082 459
4-aminobutyrate aminotransferase; Provisional
99.05 PRK05639 457
4-aminobutyrate aminotransferase; Provisional
99.04 PRK07495 425
4-aminobutyrate aminotransferase; Provisional
99.03 PRK00615 433
glutamate-1-semialdehyde aminotransferase; Provisi
99.02 PRK09221 445
beta alanine--pyruvate transaminase; Provisional
99.02 PLN02974 817
adenosylmethionine-8-amino-7-oxononanoate transami
99.02 PRK06777 421
4-aminobutyrate aminotransferase; Provisional
99.0 TIGR00700 420
GABAtrnsam 4-aminobutyrate aminotransferase, proka
98.96 PRK08117 433
4-aminobutyrate aminotransferase; Provisional
98.96 PRK05964 423
adenosylmethionine--8-amino-7-oxononanoate transam
98.95 TIGR03246 397
arg_catab_astC succinylornithine transaminase fami
98.95 PRK06541 460
hypothetical protein; Provisional
98.95 PLN00144 382
acetylornithine transaminase
98.93 PRK04612 408
argD acetylornithine transaminase protein; Provisi
98.92 TIGR00508 427
bioA adenosylmethionine-8-amino-7-oxononanoate tra
98.92 PRK05769 441
4-aminobutyrate aminotransferase; Provisional
98.92 PRK08297 443
L-lysine aminotransferase; Provisional
98.91 TIGR00699 464
GABAtrns_euk 4-aminobutyrate aminotransferase, euk
98.9 COG0001 432
HemL Glutamate-1-semialdehyde aminotransferase [Co
98.88 PRK04013 364
argD acetylornithine/acetyl-lysine aminotransferas
98.87 PRK06209 431
glutamate-1-semialdehyde 2,1-aminomutase; Provisio
98.86 PRK06918 451
4-aminobutyrate aminotransferase; Reviewed
98.86 PRK08360 443
4-aminobutyrate aminotransferase; Provisional
98.82 TIGR02407 412
ectoine_ectB diaminobutyrate--2-oxoglutarate amino
98.82 TIGR00713 423
hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi
98.79 PRK12381 406
bifunctional succinylornithine transaminase/acetyl
98.77 PRK04073 396
rocD ornithine--oxo-acid transaminase; Provisional
98.77 TIGR03251 431
LAT_fam L-lysine 6-transaminase. Characterized mem
98.76 PRK03244 398
argD acetylornithine aminotransferase; Provisional
98.73 PRK00062 426
glutamate-1-semialdehyde aminotransferase; Provisi
98.69 PLN02624 474
ornithine-delta-aminotransferase
98.68 PRK09264 425
diaminobutyrate--2-oxoglutarate aminotransferase;
98.68 PRK01278 389
argD acetylornithine transaminase protein; Provisi
98.67 PRK02936 377
argD acetylornithine aminotransferase; Provisional
98.53 TIGR01885 401
Orn_aminotrans ornithine aminotransferase. This mo
98.49 PRK04260 375
acetylornithine aminotransferase; Provisional
98.48 PRK00854 401
rocD ornithine--oxo-acid transaminase; Reviewed
98.44 PRK02627 396
acetylornithine aminotransferase; Provisional
98.38 PTZ00125 400
ornithine aminotransferase-like protein; Provision
98.36 PRK08088 425
4-aminobutyrate aminotransferase; Validated
98.32 PRK05093 403
argD bifunctional N-succinyldiaminopimelate-aminot
98.31 cd00610 413
OAT_like Acetyl ornithine aminotransferase family.
98.27 PLN02822 481
serine palmitoyltransferase
97.88 TIGR00707 379
argD acetylornithine and succinylornithine aminotr
97.83 PLN03227 392
serine palmitoyltransferase-like protein; Provisio
97.8 PRK07505 402
hypothetical protein; Provisional
96.62 TIGR01821 402
5aminolev_synth 5-aminolevulinic acid synthase. Th
96.44 PRK09064 407
5-aminolevulinate synthase; Validated
96.35 KOG1405 484
consensus 4-aminobutyrate aminotransferase [Amino
96.18 PRK13393 406
5-aminolevulinate synthase; Provisional
96.16 PRK05958 385
8-amino-7-oxononanoate synthase; Reviewed
95.77 TIGR01825 385
gly_Cac_T_rel pyridoxal phosphate-dependent acyltr
94.05 PLN02483 489
serine palmitoyltransferase
93.69 TIGR01822 393
2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig
92.61 PRK07179 407
hypothetical protein; Provisional
92.57 TIGR03576 346
pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158
92.43 TIGR00858 360
bioF 8-amino-7-oxononanoate synthase. This model r
91.77 cd00613 398
GDC-P Glycine cleavage system P-protein, alpha- an
90.81 PRK06939 397
2-amino-3-ketobutyrate coenzyme A ligase; Provisio
90.49 PRK13392 410
5-aminolevulinate synthase; Provisional
89.8 cd06454 349
KBL_like KBL_like; this family belongs to the pyri
89.48 PLN02955 476
8-amino-7-oxononanoate synthase
88.34 PRK03317 368
histidinol-phosphate aminotransferase; Provisional
84.28
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Back Hide alignment and domain information
Probab=99.56 E-value=3.8e-15 Score=106.61 Aligned_cols=52 Identities=35% Similarity=0.377 Sum_probs=48.9
Q ss_pred ccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 12 ERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 12 g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++.+.|+.|+|||+||||+||++.++|+++.+++++++++++|++|+
T Consensus 266 a~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~ 317 (404)
T COG4992 266 ATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLL 317 (404)
T ss_pred EchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999874
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.53 E-value=1e-14 Score=103.34 Aligned_cols=53 Identities=40% Similarity=0.485 Sum_probs=50.5
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..+++||-.+.|+.|++||+||||+||+|.|+|++|++++|++|++.+|+.|+
T Consensus 289 l~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~ 341 (427)
T KOG1402|consen 289 LADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILR 341 (427)
T ss_pred EecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999875
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.47 E-value=4.6e-14 Score=102.15 Aligned_cols=53 Identities=34% Similarity=0.404 Sum_probs=49.9
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++||+ +.++.|++||+|||++||||+|+|++|++++|++|++++|++|+
T Consensus 302 vv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~ 354 (447)
T COG0160 302 VVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLR 354 (447)
T ss_pred EeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 468999999 77899999999999999999999999999999999999999875
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=99.39 E-value=5.2e-13 Score=96.79 Aligned_cols=52 Identities=29% Similarity=0.484 Sum_probs=47.7
Q ss_pred ccHHHHHHhcc-----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 12 ERTKLMVLLSI-----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 12 g~~~i~~~~~~-----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++|++.|.. +.|+.||+|||++||||+|+|++++++++++|++++|.+|.
T Consensus 298 ~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~ 354 (449)
T COG0161 298 TSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQ 354 (449)
T ss_pred hhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 68999998843 47999999999999999999999999999999999999874
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.37 E-value=5.6e-13 Score=95.64 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=48.9
Q ss_pred cccHHHHHHhccc-CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSIL-LNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~-~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++||++.+..- .|++||+|||++||+++|+|++|++++|+||+++.|.||+
T Consensus 293 vtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~ 346 (442)
T KOG1404|consen 293 VTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLL 346 (442)
T ss_pred ecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3589999999754 4999999999999999999999999999999999999986
>PRK05965 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.34 E-value=1.5e-12 Score=93.69 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=48.9
Q ss_pred ccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++|||++++|++++++++++|++++|++|.
T Consensus 296 v~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~ 356 (459)
T PRK05965 296 VLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFA 356 (459)
T ss_pred EEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4589999998853 36999999999999999999999999999999999999874
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Probab=99.34 E-value=1.5e-12 Score=93.87 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=49.3
Q ss_pred hccccHHHHHHhc-------ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLS-------ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~-------~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+. +..|++||+|||++|||++++|++++++++++|++++|++|+
T Consensus 295 av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~ 356 (466)
T PRK07030 295 AVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMA 356 (466)
T ss_pred EEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3568999999874 246999999999999999999999999999999999999874
>PRK07483 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.33 E-value=1.7e-12 Score=92.96 Aligned_cols=56 Identities=20% Similarity=0.128 Sum_probs=49.9
Q ss_pred hhccccHHHHHHhcc----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSI----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
--.+++++|++.+.+ ..|++||+|||++||+++++|++|+++++++|++++|++|+
T Consensus 279 ~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~ 338 (443)
T PRK07483 279 GAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLR 338 (443)
T ss_pred EEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345689999998864 26999999999999999999999999999999999999874
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Probab=99.33 E-value=1.8e-12 Score=93.17 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=48.7
Q ss_pred ccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++||+++++|+++++++++++++++|++|.
T Consensus 303 v~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~ 362 (453)
T PRK06943 303 VLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLR 362 (453)
T ss_pred EEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4589999998853 25999999999999999999999999999999999999874
>PRK07482 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.33 E-value=2e-12 Score=92.97 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=48.2
Q ss_pred ccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.. ..|++||+|||++||||+|+|+++++++++++++++|++|.
T Consensus 301 v~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~ 361 (461)
T PRK07482 301 SIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFR 361 (461)
T ss_pred eeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578999998752 36999999999999999999999999999999999999874
>TIGR03372 putres_am_tran putrescine aminotransferase
Back Show alignment and domain information
Probab=99.33 E-value=2.1e-12 Score=92.90 Aligned_cols=53 Identities=26% Similarity=0.425 Sum_probs=48.4
Q ss_pred cccHHHHHHh--cccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLL--SILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~--~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+ .++.|++||+|||++|||++|+|++|+++++++|++++|++|+
T Consensus 306 v~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~ 360 (442)
T TIGR03372 306 IATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLL 360 (442)
T ss_pred EecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4689999988 3457999999999999999999999999999999999999874
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
>PRK07481 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.31 E-value=3.2e-12 Score=91.61 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=49.4
Q ss_pred hccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|.
T Consensus 293 av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 354 (449)
T PRK07481 293 ATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLL 354 (449)
T ss_pred EEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35689999998853 36999999999999999999999999999999999999874
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Probab=99.31 E-value=3.1e-12 Score=92.52 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=49.1
Q ss_pred hccccHHHHHHhc------ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLS------ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~------~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+. ++.|++||+|||++|||++++|++++++++++|++++|++|.
T Consensus 317 av~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~ 377 (472)
T PRK08742 317 AVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMT 377 (472)
T ss_pred eeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4458999999874 236999999999999999999999999999999999999875
>PRK07678 aminotransferase; Validated
Back Show alignment and domain information
Probab=99.31 E-value=3.1e-12 Score=91.73 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=48.8
Q ss_pred ccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|+
T Consensus 294 v~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 353 (451)
T PRK07678 294 TAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLL 353 (451)
T ss_pred EEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4689999998863 35999999999999999999999999999999999999874
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.28 E-value=4.2e-12 Score=91.58 Aligned_cols=51 Identities=29% Similarity=0.283 Sum_probs=46.5
Q ss_pred ccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 12 ERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 12 g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++ +.+.++.|++||+|||++||||+|+|++++++++++|++++|++|.
T Consensus 313 ~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~ 363 (464)
T PRK06938 313 YREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLR 363 (464)
T ss_pred ehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57775 7777788999999999999999999999999999999999999874
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.27 E-value=5.8e-12 Score=89.92 Aligned_cols=55 Identities=27% Similarity=0.374 Sum_probs=50.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..+++++|++.+.+..|++||+|||++||||+++|+++++++++++++++|++|.
T Consensus 298 av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~ 352 (443)
T PRK06058 298 AVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMT 352 (443)
T ss_pred EEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3458999999998888999999999999999999999999999999999999874
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.27 E-value=6e-12 Score=89.53 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=48.4
Q ss_pred cccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+.+ ..|++||+|||++|||++|+|+++++++++++++++|++|+
T Consensus 280 ~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~ 335 (428)
T PRK12389 280 GGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLE 335 (428)
T ss_pred eEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 589999999853 46999999999999999999999999999999999999874
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.26 E-value=6.8e-12 Score=90.32 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=46.6
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++ ++.+.++.|++||+|||++||+|+++|++++++++++|++++|++|+
T Consensus 306 ~~~~~-~~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~ 357 (459)
T PRK06931 306 GIKKE-FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLK 357 (459)
T ss_pred eeHHH-HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35666 48887788999999999999999999999999999999999999874
>PRK07036 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.26 E-value=8.2e-12 Score=90.05 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=49.1
Q ss_pred hccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+.+ ..|++||+|||++||+++++|++|++++++++++++|++|+
T Consensus 301 av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~ 362 (466)
T PRK07036 301 AVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFE 362 (466)
T ss_pred EEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34589999998852 36899999999999999999999999999999999999874
>PRK06148 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.26 E-value=7.3e-12 Score=97.09 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=49.5
Q ss_pred ccccHHHHHHhccc-CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSIL-LNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~-~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.++ .|++||+|||++|||++++|++|+++++++|++++|++|+
T Consensus 865 v~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~ 919 (1013)
T PRK06148 865 VVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLL 919 (1013)
T ss_pred EEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 35799999999765 4899999999999999999999999999999999999874
>PLN02760 4-aminobutyrate:pyruvate transaminase
Back Show alignment and domain information
Probab=99.26 E-value=8.4e-12 Score=90.96 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=48.9
Q ss_pred ccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ +.|++||+|||++||+++++|++|++++++++++++|++|+
T Consensus 341 v~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~ 401 (504)
T PLN02760 341 VLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQ 401 (504)
T ss_pred EeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5689999998853 36999999999999999999999999999999999999874
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue
Back Show alignment and domain information
Probab=99.25 E-value=9.7e-12 Score=86.26 Aligned_cols=54 Identities=31% Similarity=0.407 Sum_probs=49.8
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+..|++||+|||++|++++++|+++++++++++++++|++|.
T Consensus 257 v~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~ 310 (339)
T PF00202_consen 257 VLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLR 310 (339)
T ss_dssp EEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHH
Confidence 458999999998888999999999999999999999999999999999999874
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.25 E-value=1.1e-11 Score=89.38 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=48.6
Q ss_pred ccccHHHHHHhc--ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLS--ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~--~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+. ++.|++||+|||++||+++|+|++|++++++++++++|++|+
T Consensus 312 v~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~ 367 (459)
T PRK11522 312 TIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLL 367 (459)
T ss_pred EEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 346889999874 567999999999999999999999999999999999999875
>PRK07480 putative aminotransferase; Validated
Back Show alignment and domain information
Probab=99.24 E-value=1.3e-11 Score=88.78 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=48.3
Q ss_pred hccccHHHHHHh--cc--cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHH-HHhhcccc
Q 035320 9 YKNERTKLMVLL--SI--LLNQSTFDGNPLATAVAIASLNVIRDEKLAERS-RAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~--~~--~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~-~~~G~~L~ 63 (67)
-.+++++|++.+ .+ ..|++||+|||++|||++++|++++++++++++ +++|++|+
T Consensus 299 av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~ 358 (456)
T PRK07480 299 AVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQ 358 (456)
T ss_pred EEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345799999988 23 369999999999999999999999999999999 69999874
>PRK06062 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.22 E-value=1.9e-11 Score=87.79 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=47.0
Q ss_pred ccccHHHHHHhcc--cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhc-cc
Q 035320 10 KNERTKLMVLLSI--LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEG-IH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~--~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~-~L 62 (67)
.+++++|++.+.+ ..|++||+|||++||+++++|++|++++++++++++|+ +|
T Consensus 295 v~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l 350 (451)
T PRK06062 295 VAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVL 350 (451)
T ss_pred EEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4578899999864 36999999999999999999999999999999999994 55
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Back Show alignment and domain information
Probab=99.21 E-value=1.5e-11 Score=86.99 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=48.9
Q ss_pred cccHHHHHHhcc--cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccccc
Q 035320 11 NERTKLMVLLSI--LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHYL 64 (67)
Q Consensus 11 ~g~~~i~~~~~~--~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~~ 64 (67)
+.+++|+++|.. ....+||+|||++||+++|+++++++++|++|++++|++|.+
T Consensus 291 attkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~ 346 (452)
T KOG1403|consen 291 ATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEV 346 (452)
T ss_pred eccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 468999999975 367799999999999999999999999999999999998864
>PRK06105 aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.20 E-value=2.3e-11 Score=87.58 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=49.9
Q ss_pred hhhccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 7 YMYKNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 7 ~~~~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+-..+++++|++.+.+ +.|++||+|||++||+++++|++|++++++++++++|++|.
T Consensus 296 ~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~ 359 (460)
T PRK06105 296 LSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQ 359 (460)
T ss_pred ceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3345689999998853 24899999999999999999999999999999999999874
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Probab=99.19 E-value=3.3e-11 Score=86.76 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=48.9
Q ss_pred hccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-.+++++|++.+.+ ..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 304 av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 365 (460)
T PRK06916 304 ITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVA 365 (460)
T ss_pred eeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45689999998742 36999999999999999999999999999999999999864
>PRK06917 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.18 E-value=2.7e-11 Score=86.92 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=50.2
Q ss_pred hhhccccHHHHHHhcc----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 7 YMYKNERTKLMVLLSI----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 7 ~~~~~g~~~i~~~~~~----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+-..++++++++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|+
T Consensus 278 i~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 338 (447)
T PRK06917 278 IAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLI 338 (447)
T ss_pred eEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 3456689999998854 35889999999999999999999999999999999999874
>PRK07046 aminotransferase; Validated
Back Show alignment and domain information
Probab=99.18 E-value=2.8e-11 Score=87.11 Aligned_cols=54 Identities=19% Similarity=0.013 Sum_probs=48.2
Q ss_pred ccccHHHHHHhcc---------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI---------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~---------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+|+++||+.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|+
T Consensus 296 v~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~ 358 (453)
T PRK07046 296 YGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLA 358 (453)
T ss_pred eeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4689999998852 25889999999999999999999999999999999999873
>PRK12403 putative aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.17 E-value=4.4e-11 Score=86.10 Aligned_cols=53 Identities=28% Similarity=0.367 Sum_probs=46.8
Q ss_pred cccHHHHHHhcc----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHH-Hhhcccc
Q 035320 11 NERTKLMVLLSI----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSR-AFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~-~~G~~L~ 63 (67)
++++++++.+.+ +.|++||+|||++||+++|+|++|++++++++++ ++|++|+
T Consensus 304 v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~ 361 (460)
T PRK12403 304 VLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQ 361 (460)
T ss_pred EECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 378999998842 3599999999999999999999999999999996 9999864
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Back Show alignment and domain information
Probab=99.16 E-value=4.8e-11 Score=85.42 Aligned_cols=53 Identities=30% Similarity=0.315 Sum_probs=47.9
Q ss_pred cccHHHHHHhccc-----CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSIL-----LNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~-----~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+.+. .|++||+|||++||+++++|++++++++++|++++|++|+
T Consensus 287 ~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~ 344 (428)
T PRK07986 287 LTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLR 344 (428)
T ss_pred hchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4789999988542 5999999999999999999999999999999999999874
>PRK06149 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.13 E-value=7.3e-11 Score=91.16 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=48.8
Q ss_pred ccccHHHHHHhcc-cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ +.+++||+|||++||+|+++|++|+++++++|++++|++|+
T Consensus 825 v~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~ 879 (972)
T PRK06149 825 VITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLK 879 (972)
T ss_pred EEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4589999999875 56779999999999999999999999999999999999874
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Back Show alignment and domain information
Probab=99.12 E-value=7.2e-11 Score=85.66 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=48.4
Q ss_pred cccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+|+++|++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|+
T Consensus 326 ~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~ 381 (474)
T PLN02482 326 GGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLI 381 (474)
T ss_pred EEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 589999999853 46999999999999999999999999999999999999874
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.10 E-value=1.1e-10 Score=84.11 Aligned_cols=53 Identities=25% Similarity=0.294 Sum_probs=49.3
Q ss_pred cccHHHHHHhcccC---CCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILL---NQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~---h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+.++. |++||+|||++|++|..+|+.+.+++.+.++..+|+.|+
T Consensus 287 ~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~ 342 (433)
T KOG1401|consen 287 GVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELR 342 (433)
T ss_pred eehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 58999999998764 599999999999999999999999999999999999875
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases
Back Show alignment and domain information
Probab=99.09 E-value=1.3e-10 Score=83.15 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=46.7
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++ ++.+.+..|++||+|||++||||+++|+++++++++++++++|++|.
T Consensus 286 v~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~ 338 (442)
T TIGR00709 286 LLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERIT 338 (442)
T ss_pred EEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 346777 47666678999999999999999999999999999999999999874
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.08 E-value=2e-10 Score=82.38 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=50.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..++++++++.+.+..|.+||+|||++||+++++|+++++++++++++++|++|+
T Consensus 286 av~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 340 (445)
T PRK08593 286 AIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYAR 340 (445)
T ss_pred EEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4568999999987778899999999999999999999999999999999999874
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Probab=99.08 E-value=1.9e-10 Score=82.34 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=47.8
Q ss_pred ccccHHHHHHhcc-----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 346 (429)
T PRK06173 288 TITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLK 346 (429)
T ss_pred EEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478999998853 36999999999999999999999999999999999999863
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Back Show alignment and domain information
Probab=99.07 E-value=2.1e-10 Score=82.25 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=47.2
Q ss_pred cccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++|++.+.. ..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 297 ~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 356 (442)
T PRK13360 297 FVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWE 356 (442)
T ss_pred EEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 479999998743 25899999999999999999999999999999999999874
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Probab=99.07 E-value=2.4e-10 Score=81.61 Aligned_cols=55 Identities=33% Similarity=0.351 Sum_probs=48.6
Q ss_pred hccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..+++++|++.+.. ..|++||+|||++||+++++|++++++++.++++++|++|+
T Consensus 281 av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~ 341 (422)
T PRK05630 281 ATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELI 341 (422)
T ss_pred eeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44689999998742 26999999999999999999999999999999999999874
>PRK03715 argD acetylornithine transaminase protein; Provisional
Back Show alignment and domain information
Probab=99.06 E-value=1.7e-10 Score=81.52 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=46.2
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+++++++ .+.++.|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 260 ~~~~~i~-~~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~ 311 (395)
T PRK03715 260 LAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLK 311 (395)
T ss_pred EEccccc-cccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4788886 455667999999999999999999999999999999999999874
>PRK09792 4-aminobutyrate transaminase; Provisional
Back Show alignment and domain information
Probab=99.06 E-value=2.6e-10 Score=81.06 Aligned_cols=55 Identities=31% Similarity=0.257 Sum_probs=50.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||+|||++|+|++++|+++++++++++++++|+++.
T Consensus 277 av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 331 (421)
T PRK09792 277 GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLK 331 (421)
T ss_pred EEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4568999999998778999999999999999999999999999999999999864
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.05 E-value=2.8e-10 Score=82.00 Aligned_cols=53 Identities=28% Similarity=0.309 Sum_probs=45.8
Q ss_pred ccccHHHHHHhcc-cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.. ..| +||+|||++||+++++|+++++++++++++++|++|+
T Consensus 309 v~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 362 (459)
T PRK06082 309 MITKDKYNTAAQISLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMR 362 (459)
T ss_pred EEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3478888876643 346 8999999999999999999999999999999999874
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.04 E-value=3.1e-10 Score=81.82 Aligned_cols=54 Identities=26% Similarity=0.198 Sum_probs=48.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..++++++++ +..+.|.+||+|||++|||++++|+++++++++++++++|++|+
T Consensus 301 av~~~~~i~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 354 (457)
T PRK05639 301 GVIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIK 354 (457)
T ss_pred eEEehHHHHh-hcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4568999999 44456889999999999999999999999999999999999874
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.03 E-value=3.9e-10 Score=80.47 Aligned_cols=56 Identities=30% Similarity=0.307 Sum_probs=51.2
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-+.++++++++.+.+..|++||+|||++||+++++|++++++++.++++++|++|+
T Consensus 276 gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 331 (425)
T PRK07495 276 AAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLK 331 (425)
T ss_pred eEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 34568999999998888999999999999999999999999999999999999874
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.02 E-value=4.4e-10 Score=80.64 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=49.1
Q ss_pred hhccccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 8 MYKNERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
-..++++++++.+.+ ..|++||+|||++|||++++|+++++++++++++++|++|
T Consensus 278 ~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l 335 (433)
T PRK00615 278 AAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNF 335 (433)
T ss_pred eeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 345689999998853 3589999999999999999999999999999999999987
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Back Show alignment and domain information
Probab=99.02 E-value=5.2e-10 Score=80.32 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=47.9
Q ss_pred ccccHHHHHHhcc-------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.. ..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 299 v~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~ 359 (445)
T PRK09221 299 VIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFE 359 (445)
T ss_pred eEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4578999998742 25889999999999999999999999999999999999874
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Back Show alignment and domain information
Probab=99.02 E-value=4.7e-10 Score=85.98 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=42.3
Q ss_pred ccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhh----HHHHHHHhhccc
Q 035320 10 KNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEK----LAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~----l~e~~~~~G~~L 62 (67)
.+++++|++.|.. +.|++||+|||++||||+++|+++++++ +.+++++++++|
T Consensus 666 ~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l 728 (817)
T PLN02974 666 TLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELW 728 (817)
T ss_pred EEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4579999999842 3699999999999999999999999985 445555555443
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.00 E-value=6.1e-10 Score=79.18 Aligned_cols=55 Identities=33% Similarity=0.330 Sum_probs=50.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||+|||++|++++++|+++++++++++++++|++|.
T Consensus 277 av~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~ 331 (421)
T PRK06777 277 AVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLV 331 (421)
T ss_pred EEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4568999999998888999999999999999999999999999999999998863
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type
Back Show alignment and domain information
Probab=98.96 E-value=1.1e-09 Score=77.65 Aligned_cols=55 Identities=33% Similarity=0.347 Sum_probs=50.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||+|||++|++++++|++++++++.++++++|++|.
T Consensus 276 ~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 330 (420)
T TIGR00700 276 GVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVT 330 (420)
T ss_pred EEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4568999999998788999999999999999999999999999999999998753
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.96 E-value=1.2e-09 Score=77.64 Aligned_cols=55 Identities=31% Similarity=0.437 Sum_probs=50.0
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+....|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 286 av~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 340 (433)
T PRK08117 286 AVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYAL 340 (433)
T ss_pred eEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4458999999987778999999999999999999999999999999999998864
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Back Show alignment and domain information
Probab=98.95 E-value=1.2e-09 Score=77.35 Aligned_cols=54 Identities=26% Similarity=0.334 Sum_probs=48.0
Q ss_pred ccccHHHHHHhcc------cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI------LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~------~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+ ..|++||+|||++|++++++|+++++++++++++++|++|+
T Consensus 281 v~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 340 (423)
T PRK05964 281 TLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLA 340 (423)
T ss_pred EEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5689999998742 25899999999999999999999999999999999999874
>TIGR03246 arg_catab_astC succinylornithine transaminase family
Back Show alignment and domain information
Probab=98.95 E-value=1.3e-09 Score=76.55 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=48.8
Q ss_pred cccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
++++++++.+....|++||+|||++|++++++|++++++++.+++++++++|.
T Consensus 260 ~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~ 312 (397)
T TIGR03246 260 LTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFV 312 (397)
T ss_pred EEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 35999999998778999999999999999999999999999999999999874
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
>PRK06541 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=98.95 E-value=1.2e-09 Score=78.86 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=49.6
Q ss_pred hhhccccHHHHHHhcc----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 7 YMYKNERTKLMVLLSI----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 7 ~~~~~g~~~i~~~~~~----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+-..++++++++.+.+ ..|++||+|||++||+++++|+++++++++++++++|++|.
T Consensus 299 igav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~ 359 (460)
T PRK06541 299 LGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFR 359 (460)
T ss_pred eeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445689999998753 35889999999999999999999999999999999999874
>PLN00144 acetylornithine transaminase
Back Show alignment and domain information
Probab=98.93 E-value=1.7e-09 Score=76.00 Aligned_cols=54 Identities=20% Similarity=0.127 Sum_probs=50.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
+.++++++++.+.+..|++||+|||++|++++++|++|+++++.++++++|++|
T Consensus 246 ~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l 299 (382)
T PLN00144 246 AVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYL 299 (382)
T ss_pred EEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 456899999999888899999999999999999999999999999999999987
>PRK04612 argD acetylornithine transaminase protein; Provisional
Back Show alignment and domain information
Probab=98.92 E-value=2.1e-09 Score=76.45 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=49.2
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+....|++||+|||++|++++++|++++++++.++++++|++|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~ 320 (408)
T PRK04612 267 MLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALR 320 (408)
T ss_pred EEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 347888999888778999999999999999999999999999999999998864
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase
Back Show alignment and domain information
Probab=98.92 E-value=2.2e-09 Score=76.66 Aligned_cols=54 Identities=31% Similarity=0.337 Sum_probs=47.7
Q ss_pred ccccHHHHHHhccc-----CCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSIL-----LNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~-----~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+. .|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 347 (427)
T TIGR00508 289 TVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLK 347 (427)
T ss_pred EEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788999988642 4899999999999999999999999999999999999874
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.92 E-value=1.8e-09 Score=77.39 Aligned_cols=53 Identities=30% Similarity=0.370 Sum_probs=46.8
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+ +..|++||+|||++|++++++|+++++ +++++++++|++|+
T Consensus 300 av~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~ 352 (441)
T PRK05769 300 AVIGRAELMFLP-PGSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLR 352 (441)
T ss_pred EEEEehhhhhcC-CCCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 356899998643 467999999999999999999999999 99999999999874
>PRK08297 L-lysine aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.91 E-value=2.2e-09 Score=77.09 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=39.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 22 ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 22 ~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+..|++||+|||++||+++++|+++++++++++++++|++|+
T Consensus 318 ~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 359 (443)
T PRK08297 318 SSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLL 359 (443)
T ss_pred ccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 346999999999999999999999999999999999999874
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type
Back Show alignment and domain information
Probab=98.90 E-value=1.4e-09 Score=78.95 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=39.7
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 21 SILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 21 ~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+..|++||+|||++||+++++|+++++++++++++++|++|.
T Consensus 340 ~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 382 (464)
T TIGR00699 340 KPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLY 382 (464)
T ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999998864
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=98.88 E-value=3e-09 Score=77.08 Aligned_cols=54 Identities=30% Similarity=0.362 Sum_probs=48.1
Q ss_pred ccccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~L~ 63 (67)
.+||+|||+.+.| ..+.+||+|||++++|++++|+.+.+ +.++++..++|++|.
T Consensus 279 ~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~ 336 (432)
T COG0001 279 FGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLA 336 (432)
T ss_pred eccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4699999998865 47999999999999999999999987 569999999998874
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.87 E-value=3e-09 Score=74.94 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 035320 22 ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAF 58 (67)
Q Consensus 22 ~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~ 58 (67)
++.|++||+|||++|||++++|++|+++++++|++++
T Consensus 249 ~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~ 285 (364)
T PRK04013 249 RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK 285 (364)
T ss_pred CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4579999999999999999999999999999999886
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Back Show alignment and domain information
Probab=98.86 E-value=2.8e-09 Score=76.07 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=48.0
Q ss_pred hhccccHHHHHH--hc------ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVL--LS------ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~--~~------~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-..++++++++. +. ++.|++||+|||++||+++++|++|++++++++++++|++|+
T Consensus 260 ~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 323 (431)
T PRK06209 260 SALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA 323 (431)
T ss_pred EEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345689999987 31 124899999999999999999999999999999999999874
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Back Show alignment and domain information
Probab=98.86 E-value=3.7e-09 Score=75.66 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=50.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||+|||++|++++++|++++++++.++++++|++|.
T Consensus 298 ~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 352 (451)
T PRK06918 298 GVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVM 352 (451)
T ss_pred EEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4568999999998888999999999999999999999999999999999998763
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.82 E-value=6.6e-09 Score=74.62 Aligned_cols=55 Identities=27% Similarity=0.381 Sum_probs=50.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+....|.+||+|||++|++++++|+++++++++++++++|++|+
T Consensus 283 av~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 337 (443)
T PRK08360 283 ATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTK 337 (443)
T ss_pred EEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4568999999998777999999999999999999999999999999999999874
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase
Back Show alignment and domain information
Probab=98.82 E-value=5.2e-09 Score=74.26 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=46.4
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHH-HhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNV-IRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~-i~~~~l~e~~~~~G~~L~ 63 (67)
..+++++ +.+.+..|++||+|||++|++++++|++ ++++++.++++++|++|.
T Consensus 275 v~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~ 328 (412)
T TIGR02407 275 TLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQ 328 (412)
T ss_pred EEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3467887 7777778999999999999999999996 888999999999999874
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase
Back Show alignment and domain information
Probab=98.79 E-value=8.5e-09 Score=72.58 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=49.3
Q ss_pred hhhccccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 7 YMYKNERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 7 ~~~~~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
+-+.++++++++.+.+ ..|++||++||++|++++++|+++++++++++++++++++
T Consensus 271 ig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~ 329 (423)
T TIGR00713 271 VGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRL 329 (423)
T ss_pred eeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3456789999999863 4588999999999999999999999999999999999886
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Back Show alignment and domain information
Probab=98.77 E-value=1.3e-08 Score=71.76 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=50.5
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-+.++++++++.+.+..|++||++||++|++++++|++++++++.+++++++++|.
T Consensus 261 g~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 316 (406)
T PRK12381 261 GAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFV 316 (406)
T ss_pred EEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34568899999998888999999999999999999999999999999999998763
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Back Show alignment and domain information
Probab=98.77 E-value=1.3e-08 Score=71.19 Aligned_cols=55 Identities=36% Similarity=0.474 Sum_probs=50.0
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
|.++++++++.+.+..|++||++||++|++++++|++++++++.+++++++++|.
T Consensus 266 ~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~ 320 (396)
T PRK04073 266 CVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFK 320 (396)
T ss_pred EEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5568999999998778999999999999999999999998999999999988764
>TIGR03251 LAT_fam L-lysine 6-transaminase
Back Show alignment and domain information
Probab=98.76 E-value=1.2e-08 Score=72.94 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=38.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 22 ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 22 ~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+..|++||+|||++||+++++|+++++++++++++++|++|.
T Consensus 311 ~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 352 (431)
T TIGR03251 311 PSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLL 352 (431)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999874
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
>PRK03244 argD acetylornithine aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.73 E-value=1.9e-08 Score=69.97 Aligned_cols=55 Identities=33% Similarity=0.284 Sum_probs=49.4
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|.+||++||++|++++++|++++++++.+++++++++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~ 316 (398)
T PRK03244 262 ACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLR 316 (398)
T ss_pred EEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4457889999988778999999999999999999999999999999999998763
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.69 E-value=2.7e-08 Score=70.76 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=48.1
Q ss_pred hccccHHHHHHhc---ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLS---ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~---~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
+.++++++++.+. +..|++||+|||++|++++++|++++++++++++++++++|
T Consensus 275 a~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~ 331 (426)
T PRK00062 275 AFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRL 331 (426)
T ss_pred eeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3468999999885 34688999999999999999999999999999999999987
>PLN02624 ornithine-delta-aminotransferase
Back Show alignment and domain information
Probab=98.68 E-value=3.7e-08 Score=71.21 Aligned_cols=55 Identities=42% Similarity=0.479 Sum_probs=49.1
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.++.|++||+|||++|+++.++|++++++++.+++.+++++|+
T Consensus 304 av~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~ 358 (474)
T PLN02624 304 AVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELR 358 (474)
T ss_pred eeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3457889999888888999999999999999999999999999999999988764
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Back Show alignment and domain information
Probab=98.68 E-value=2.8e-08 Score=70.67 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=45.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHH-HHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASL-NVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l-~~i~~~~l~e~~~~~G~~L~ 63 (67)
+..+++++ +.+.+..|++||+|||++|++++++| ++++++++.++++++|++|.
T Consensus 278 av~~~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~ 332 (425)
T PRK09264 278 LVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVR 332 (425)
T ss_pred EEEEchhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34567887 46666789999999999999999999 77788899999999999874
>PRK01278 argD acetylornithine transaminase protein; Provisional
Back Show alignment and domain information
Probab=98.67 E-value=4.2e-08 Score=68.24 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=49.3
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+....|++||++||+++++++++|++++++++.++++++++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 308 (389)
T PRK01278 254 ACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLK 308 (389)
T ss_pred EEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4568899999998888999999999999999999999998899999999888754
>PRK02936 argD acetylornithine aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.53 E-value=1.6e-07 Score=64.84 Aligned_cols=56 Identities=27% Similarity=0.230 Sum_probs=49.4
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-+.++++++++.+.+..+.+||++||+++++++++|+.++++++++++++++++|.
T Consensus 245 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~ 300 (377)
T PRK02936 245 GAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFL 300 (377)
T ss_pred EEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35568999999998778899999999999999999999988889999998888763
>TIGR01885 Orn_aminotrans ornithine aminotransferase
Back Show alignment and domain information
Probab=98.49 E-value=2.6e-07 Score=64.66 Aligned_cols=55 Identities=36% Similarity=0.466 Sum_probs=48.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+....+++||++||++|++++++|++++++++.+++++++++|.
T Consensus 266 ~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~ 320 (401)
T TIGR01885 266 AVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFR 320 (401)
T ss_pred EEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3558899999887767889999999999999999999998899999999988763
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
>PRK04260 acetylornithine aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.48 E-value=3e-07 Score=63.79 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=49.5
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-+..+++++++.+....+.+||++||++|+++.++|++++++++++++++.+++++
T Consensus 243 g~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~ 298 (375)
T PRK04260 243 GAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQ 298 (375)
T ss_pred EEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34568899999887777999999999999999999999998899999999988764
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Back Show alignment and domain information
Probab=98.44 E-value=3.7e-07 Score=63.65 Aligned_cols=54 Identities=31% Similarity=0.404 Sum_probs=48.5
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+..+++||++||++|++++++|+.++++++.+++++++++|.
T Consensus 268 v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~ 321 (401)
T PRK00854 268 VLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFL 321 (401)
T ss_pred EEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 457999999887778999999999999999999999998889999999988763
>PRK02627 acetylornithine aminotransferase; Provisional
Back Show alignment and domain information
Probab=98.38 E-value=6.9e-07 Score=61.79 Aligned_cols=55 Identities=29% Similarity=0.329 Sum_probs=48.7
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
|.++++++++.+....+.+||++||+++++++++|+.++++++.++++++++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~ 315 (396)
T PRK02627 261 AVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLR 315 (396)
T ss_pred EEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4568899999888778999999999999999999999998899999998887653
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Back Show alignment and domain information
Probab=98.36 E-value=8.5e-07 Score=61.63 Aligned_cols=54 Identities=33% Similarity=0.508 Sum_probs=48.3
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
+.++++++++.+.+..+++||++||++++++.++|+.++++++.++++++++++
T Consensus 258 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l 311 (400)
T PTZ00125 258 AVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVF 311 (400)
T ss_pred EEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 556899999988777788999999999999999999999889999999888765
>PRK08088 4-aminobutyrate aminotransferase; Validated
Back Show alignment and domain information
Probab=98.32 E-value=1.1e-06 Score=62.37 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=50.6
Q ss_pred hhccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
-|.++++++++.+....+++||++||++++++.++|+.++++++++++++++++++
T Consensus 277 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (425)
T PRK08088 277 AGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLK 332 (425)
T ss_pred eeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34568999999998888999999999999999999999999999999999998764
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Back Show alignment and domain information
Probab=98.31 E-value=1.3e-06 Score=61.39 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=48.6
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+.+..|++||++||+++++++++|+.++++++.+++++++++|.
T Consensus 263 ~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 317 (403)
T PRK05093 263 AMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFV 317 (403)
T ss_pred EEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3457899999998778899999999999999999999998899999999888763
>cd00610 OAT_like Acetyl ornithine aminotransferase family
Back Show alignment and domain information
Probab=98.27 E-value=1.9e-06 Score=59.74 Aligned_cols=55 Identities=33% Similarity=0.387 Sum_probs=47.9
Q ss_pred hccccHHHHHHh--cccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLL--SILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~--~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
+.++++++++.+ ....+.+||++||++++++.++|++++++++.+++++++++|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~ 326 (413)
T cd00610 270 AVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLR 326 (413)
T ss_pred EEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345899999986 4567889999999999999999999998999999999988763
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
>PLN02822 serine palmitoyltransferase
Back Show alignment and domain information
Probab=97.88 E-value=1.7e-05 Score=57.61 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=46.8
Q ss_pred ccccHHHHHHhcccCCCCCCCCC--HHHHHHHHHHHHHHhh-hhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGN--PLATAVAIASLNVIRD-EKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gn--pla~AAala~l~~i~~-~~l~e~~~~~G~~L~ 63 (67)
.+|++++++.+....++.||+++ |..++|++++|+.+++ +++.+++++++++|.
T Consensus 325 i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~ 381 (481)
T PLN02822 325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLH 381 (481)
T ss_pred EEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 34999999998777889999998 9999999999999876 788888888888764
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases
Back Show alignment and domain information
Probab=97.83 E-value=4.6e-05 Score=52.35 Aligned_cols=54 Identities=31% Similarity=0.355 Sum_probs=46.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L 62 (67)
|..+++++++.+.+..+..+|++||++++++.++|+.++++++.++++++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~ 302 (379)
T TIGR00707 249 ATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYF 302 (379)
T ss_pred EEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456889999999877788999999999999999999998778888888877665
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Back Show alignment and domain information
Probab=97.80 E-value=3.9e-05 Score=54.19 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=44.0
Q ss_pred ccccHHHHHHhcccCCCCCCCCC--HHHHHHHHHHHHH-HhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGN--PLATAVAIASLNV-IRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gn--pla~AAala~l~~-i~~~~l~e~~~~~G~~L~ 63 (67)
.+|++++++.+....++.||+++ |..|++++++++. ++++++.+++++++++|+
T Consensus 219 v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~ 275 (392)
T PLN03227 219 TVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLY 275 (392)
T ss_pred EecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45899998888767788999998 9888888877755 567889999999888764
>PRK07505 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=96.62 E-value=0.0028 Score=44.45 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=34.9
Q ss_pred cccHHHHHHhcccCCCCCCCCC--HHHHHHHHHHHHHHhhhhHHHH
Q 035320 11 NERTKLMVLLSILLNQSTFDGN--PLATAVAIASLNVIRDEKLAER 54 (67)
Q Consensus 11 ~g~~~i~~~~~~~~h~~Tf~Gn--pla~AAala~l~~i~~~~l~e~ 54 (67)
++++++.+.+....+..||+|| |++|++++++++++.++++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~ 307 (402)
T PRK07505 262 LGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQL 307 (402)
T ss_pred eCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHH
Confidence 3578888888777788999887 4899999999998876655443
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase
Back Show alignment and domain information
Probab=96.44 E-value=0.0068 Score=42.38 Aligned_cols=54 Identities=19% Similarity=0.073 Sum_probs=37.8
Q ss_pred hccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhhhh-HHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIRDEK-LAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~~~~-l~e~~~~~G~~L 62 (67)
|..+++++++.+... ....|.++||.++++++++|+.+++.+ +.++.++.+++|
T Consensus 255 ~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l 311 (402)
T TIGR01821 255 YIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRL 311 (402)
T ss_pred eeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 445899998887532 233577899999999999999987553 444444555543
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
>PRK09064 5-aminolevulinate synthase; Validated
Back Show alignment and domain information
Probab=96.35 E-value=0.0085 Score=41.92 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=39.3
Q ss_pred hccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhhhh-HHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIRDEK-LAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~~~~-l~e~~~~~G~~L 62 (67)
|.++++++++.+... .+..|.+++|.++++++++++.+++.+ ..+++.+.+++|
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l 312 (407)
T PRK09064 256 YIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKL 312 (407)
T ss_pred eEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445899988876432 234577899999999999999998654 346666666654
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=96.18 E-value=0.0046 Score=45.19 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=39.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 22 ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 22 ~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
|..+.+||-|+|--.-..-+++++|++++|++|+...|++|.
T Consensus 360 pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~ 401 (484)
T KOG1405|consen 360 PYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALL 401 (484)
T ss_pred hHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999874
>PRK13393 5-aminolevulinate synthase; Provisional
Back Show alignment and domain information
Probab=96.16 E-value=0.013 Score=41.24 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=36.0
Q ss_pred hccccHHHHHHhcccCC--CCCCCCCHHHHHHHHHHHHHHhhhh-HHHHHHHhhcc
Q 035320 9 YKNERTKLMVLLSILLN--QSTFDGNPLATAVAIASLNVIRDEK-LAERSRAFEGI 61 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h--~~Tf~Gnpla~AAala~l~~i~~~~-l~e~~~~~G~~ 61 (67)
|..+++++.+.+....+ ..|++++|.+++++.++|+.+++.. ..++.++.+++
T Consensus 255 ~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~ 310 (406)
T PRK13393 255 YITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVAR 310 (406)
T ss_pred eeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 34578898888765433 3578899999999999999886543 12333344444
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Back Show alignment and domain information
Probab=95.77 E-value=0.022 Score=38.87 Aligned_cols=53 Identities=25% Similarity=0.081 Sum_probs=39.5
Q ss_pred ccccHHHHHHhcc--cCCCCCCCCCHHHHHHHHHHHHHHhhh-hHHHHHHHhhccc
Q 035320 10 KNERTKLMVLLSI--LLNQSTFDGNPLATAVAIASLNVIRDE-KLAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~--~~h~~Tf~Gnpla~AAala~l~~i~~~-~l~e~~~~~G~~L 62 (67)
..+++++++.+.. ..+..+.+++|++++++.++|+.+++. ++.++..++++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l 303 (385)
T PRK05958 248 VLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARL 303 (385)
T ss_pred EEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4577888877642 235566789999999999999988764 6777777777654
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative
Back Show alignment and domain information
Probab=94.05 E-value=0.13 Score=35.47 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=37.0
Q ss_pred hccccHHHHHHhcccC--CCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSILL--NQSTFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~--h~~Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~L 62 (67)
|..+++++++.+.... +..+..++|..++++.++++.+++ +++.++..++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l 297 (385)
T TIGR01825 241 YAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFF 297 (385)
T ss_pred EEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4558899988875432 122234688999999999988753 56777777776654
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
>PLN02483 serine palmitoyltransferase
Back Show alignment and domain information
Probab=93.69 E-value=0.15 Score=37.32 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.3
Q ss_pred hccccHHHHHHhcccCCCCCCC--CCHHHHHHHHHHHHHHh
Q 035320 9 YKNERTKLMVLLSILLNQSTFD--GNPLATAVAIASLNVIR 47 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~--Gnpla~AAala~l~~i~ 47 (67)
|..+++++.+.+....++.+|+ .+|..+++++++|+++.
T Consensus 319 ~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~ 359 (489)
T PLN02483 319 YIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVIL 359 (489)
T ss_pred EEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHH
Confidence 4558999999887665656665 48899999999998876
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase
Back Show alignment and domain information
Probab=92.61 E-value=0.3 Score=33.74 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=34.3
Q ss_pred ccccHHHHHHhcccCCCCCCCC--CHHHHHHHHHHHHHHhh-hhHHHHHHHhhccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDG--NPLATAVAIASLNVIRD-EKLAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~G--npla~AAala~l~~i~~-~~l~e~~~~~G~~L 62 (67)
..+++++.+.+.+......|++ +|..+++++++++.+++ +++.++.+++.+++
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l 305 (393)
T TIGR01822 250 TTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYF 305 (393)
T ss_pred EEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4588888887754322333433 67777888899888754 45666666666554
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
>PRK07179 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=92.57 E-value=0.32 Score=34.16 Aligned_cols=51 Identities=22% Similarity=0.091 Sum_probs=34.2
Q ss_pred ccccHHHHHHhc----ccCCCCCCCCCHHHHHHHHHHHHHHhhh-hHHHHHHHhhccc
Q 035320 10 KNERTKLMVLLS----ILLNQSTFDGNPLATAVAIASLNVIRDE-KLAERSRAFEGIH 62 (67)
Q Consensus 10 ~~g~~~i~~~~~----~~~h~~Tf~Gnpla~AAala~l~~i~~~-~l~e~~~~~G~~L 62 (67)
..+++++++.+. +..+++|+. |..++++.++++.+++. ++.++++++.++|
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~t~~--~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l 315 (407)
T PRK07179 260 ITCPRELAEYVPFVSYPAIFSSTLL--PHEIAGLEATLEVIESADDRRARLHANARFL 315 (407)
T ss_pred EEeCHHHHHHHHHhCcCeeeCCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 447888877764 344666665 55556677888888654 4677777776665
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family
Back Show alignment and domain information
Probab=92.43 E-value=0.24 Score=34.65 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=34.5
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFE 59 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G 59 (67)
|.+|++++.+.+........|+.+|.+.++++++|+.+..+.+.+..+++.
T Consensus 213 ~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~ 263 (346)
T TIGR03576 213 LLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKE 263 (346)
T ss_pred EEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 455899998888655444455578999999999998765444444444433
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
>TIGR00858 bioF 8-amino-7-oxononanoate synthase
Back Show alignment and domain information
Probab=91.77 E-value=0.45 Score=32.05 Aligned_cols=54 Identities=20% Similarity=0.102 Sum_probs=36.2
Q ss_pred hccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~L 62 (67)
|..+++++.+.+... .+..+.+.+|.+++++.++++.+++ +++.++.++..++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l 281 (360)
T TIGR00858 225 YVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARL 281 (360)
T ss_pred EEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 445788888877432 2334456789999999999987764 35666666665543
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits
Back Show alignment and domain information
Probab=90.81 E-value=0.47 Score=32.79 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhh---HHHHHHHhhcccc
Q 035320 26 QSTFDGNPLATAVAIASLNVIRDEK---LAERSRAFEGIHY 63 (67)
Q Consensus 26 ~~Tf~Gnpla~AAala~l~~i~~~~---l~e~~~~~G~~L~ 63 (67)
.+||+++++.++++.++++.+.+++ +.++..+++++|.
T Consensus 281 ~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~ 321 (398)
T cd00613 281 SNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLA 321 (398)
T ss_pred ccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998886544 4567777776653
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Back Show alignment and domain information
Probab=90.49 E-value=0.69 Score=31.74 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=32.9
Q ss_pred hccccHHHHHHhcccCCCC--CCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhcc
Q 035320 9 YKNERTKLMVLLSILLNQS--TFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGI 61 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~--Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~ 61 (67)
|..+++++++.+....... +-..+|..++++.++++.+++ +++.++.+++.++
T Consensus 253 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 308 (397)
T PRK06939 253 YTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARY 308 (397)
T ss_pred EEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4458888888875422222 223467778888888888754 3555555555544
>PRK13392 5-aminolevulinate synthase; Provisional
Back Show alignment and domain information
Probab=89.80 E-value=0.86 Score=32.00 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=33.6
Q ss_pred hccccHHHHHHhcccC--CCCCCCCCHHHHHHHHHHHHHHhhhh-HHHHHHHhhcc
Q 035320 9 YKNERTKLMVLLSILL--NQSTFDGNPLATAVAIASLNVIRDEK-LAERSRAFEGI 61 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~--h~~Tf~Gnpla~AAala~l~~i~~~~-l~e~~~~~G~~ 61 (67)
|..+++++++.+.... ...|.+.+|++++++.++|+.+++.+ ..++.++..++
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~ 311 (410)
T PRK13392 256 YIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAA 311 (410)
T ss_pred hhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4458889888654321 23466788999999999999886433 22334444433
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)
Back Show alignment and domain information
Probab=89.48 E-value=0.92 Score=30.50 Aligned_cols=54 Identities=20% Similarity=0.135 Sum_probs=37.2
Q ss_pred hccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHhhccc
Q 035320 9 YKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIRD-EKLAERSRAFEGIH 62 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~~-~~l~e~~~~~G~~L 62 (67)
|.++++++++.+.+. ....+...+|..++++.+.++.+.+ ++..++..++.+++
T Consensus 210 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 266 (349)
T cd06454 210 YIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYL 266 (349)
T ss_pred EEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455788888776432 2233446889999999999998876 55666666665554
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
>PLN02955 8-amino-7-oxononanoate synthase
Back Show alignment and domain information
Probab=88.34 E-value=0.97 Score=33.65 Aligned_cols=50 Identities=20% Similarity=-0.055 Sum_probs=31.0
Q ss_pred ccccHHHHHHhc---ccCCCCCCCCCHHHHHHHHHHHHHHhhh-hHHHHHHHhhc
Q 035320 10 KNERTKLMVLLS---ILLNQSTFDGNPLATAVAIASLNVIRDE-KLAERSRAFEG 60 (67)
Q Consensus 10 ~~g~~~i~~~~~---~~~h~~Tf~Gnpla~AAala~l~~i~~~-~l~e~~~~~G~ 60 (67)
.+|++++++.+. .....+| +-.|..++++++++++++++ ...+++++.-+
T Consensus 328 i~gs~~~~~~l~~~~~~~ifSt-alpp~~aaa~laal~l~~~~~~~r~~L~~n~~ 381 (476)
T PLN02955 328 IACSKKWKQLIQSRGRSFIFST-AIPVPMAAAAYAAVVVARKEKWRRKAIWERVK 381 (476)
T ss_pred eecHHHHHHHHHHhCCCCeecc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 448998888875 3456666 44556667788999988533 33334444333
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=84.28 E-value=2.9 Score=28.81 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.9
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHH
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVI 46 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i 46 (67)
|..+++++++.+.... .+|..++++++++.++|+..
T Consensus 239 ~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~ 274 (368)
T PRK03317 239 YLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHA 274 (368)
T ss_pred hhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH
Confidence 4458899988886433 57889999999999988643
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 67
d1sffa_ 425
4-aminobutyrate aminotransferase, GABA-aminotransf
99.4 d2byla1 404
Ornithine aminotransferase {Human (Homo sapiens) [
99.38 d1vefa1 387
Acetylornithine/acetyl-lysine aminotransferase Arg
99.34 d2gsaa_ 427
Glutamate-1-semialdehyde aminomutase (aminotransfe
99.3 d1z7da1 404
Ornithine aminotransferase {Plasmodium yoelii yoel
99.28 d1s0aa_ 429
Adenosylmethionine-8-amino-7-oxononanoate aminotra
99.27 d1zoda1 431
Dialkylglycine decarboxylase {Pseudomonas cepacia
99.04 d1ohwa_ 461
4-aminobutyrate aminotransferase, GABA-aminotransf
98.93 d1fc4a_ 401
2-amino-3-ketobutyrate CoA ligase {Escherichia col
87.2 d1gg4a1 135
UDP-murNac-tripeptide D-alanyl-D-alanine-adding en
84.05
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1e-13 Score=95.08 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=51.0
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.++.|++||+|||++||||+++|++|++++++++++++|++|.
T Consensus 278 v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~ 331 (425)
T d1sffa_ 278 VTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLK 331 (425)
T ss_dssp EEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred EEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 358999999999999999999999999999999999999999999999999875
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.9e-13 Score=93.65 Aligned_cols=55 Identities=33% Similarity=0.368 Sum_probs=51.3
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..++++++++.+.+..|++||+|||++||||+|+|++|++++++++++++|++|+
T Consensus 268 av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~ 322 (404)
T d2byla1 268 AVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILR 322 (404)
T ss_dssp EEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred eeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHH
Confidence 3568999999999999999999999999999999999999999999999998764
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=4.1e-13 Score=91.51 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=50.6
Q ss_pred ccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.++.|++||+|||++||||+++|+++++++++++++++|++|.
T Consensus 257 ~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~ 310 (387)
T d1vefa1 257 AVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFM 310 (387)
T ss_dssp EEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHH
Confidence 458899999999999999999999999999999999999999999999998764
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.30 E-value=1e-12 Score=90.19 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=49.4
Q ss_pred ccccHHHHHHhcc---cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI---LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~---~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.++++++++.+.+ ..|++||+|||++||||+++|++|++++++++++++|++|.
T Consensus 278 ~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~ 334 (427)
T d2gsaa_ 278 YGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 334 (427)
T ss_dssp EEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred eeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHH
Confidence 3589999998864 57999999999999999999999999999999999999875
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.28 E-value=1.6e-12 Score=88.65 Aligned_cols=55 Identities=29% Similarity=0.467 Sum_probs=50.8
Q ss_pred hccccHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 9 YKNERTKLMVLLSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 9 ~~~g~~~i~~~~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..++++++++.+.++.|++||+|||++||||+++|++++++++++++.++++++.
T Consensus 266 ~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~ 320 (404)
T d1z7da1 266 AVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 320 (404)
T ss_dssp EEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHH
Confidence 3568999999999999999999999999999999999999999999999988763
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.4e-12 Score=88.69 Aligned_cols=54 Identities=26% Similarity=0.290 Sum_probs=48.9
Q ss_pred ccccHHHHHHhcc-----cCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 10 KNERTKLMVLLSI-----LLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 10 ~~g~~~i~~~~~~-----~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
.+++++|++.+.+ ..|++||+|||++||||+++|++|++++++++++++|++|+
T Consensus 286 v~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~ 344 (429)
T d1s0aa_ 286 TLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLR 344 (429)
T ss_dssp EEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHH
Confidence 4689999998853 36999999999999999999999999999999999999874
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]
Probab=99.04 E-value=1.3e-10 Score=79.33 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=46.8
Q ss_pred cccHHHHHHhc--ccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 11 NERTKLMVLLS--ILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 11 ~g~~~i~~~~~--~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
++++++++.+. ...|++||+|||++|||++++|+++++++++++++++|+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 336 (431)
T d1zoda1 282 VTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLR 336 (431)
T ss_dssp EECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred eeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 47788887764 347999999999999999999999999999999999999864
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.93 E-value=2e-10 Score=79.41 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=40.5
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Q 035320 20 LSILLNQSTFDGNPLATAVAIASLNVIRDEKLAERSRAFEGIHY 63 (67)
Q Consensus 20 ~~~~~h~~Tf~Gnpla~AAala~l~~i~~~~l~e~~~~~G~~L~ 63 (67)
..+..|++||+|||++||+|+++|++|+++++++|++++|++|.
T Consensus 335 ~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~ 378 (461)
T d1ohwa_ 335 NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLL 378 (461)
T ss_dssp SSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999864
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]
Probab=87.20 E-value=0.22 Score=32.59 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=39.7
Q ss_pred hhccccHHHHHHhccc--CCCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHhhcccc
Q 035320 8 MYKNERTKLMVLLSIL--LNQSTFDGNPLATAVAIASLNVIR-DEKLAERSRAFEGIHY 63 (67)
Q Consensus 8 ~~~~g~~~i~~~~~~~--~h~~Tf~Gnpla~AAala~l~~i~-~~~l~e~~~~~G~~L~ 63 (67)
.+.+|++++++.+... .+..+-..+|..+++++++++.+. .+++.+++++..++|+
T Consensus 255 g~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~ 313 (401)
T d1fc4a_ 255 GYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR 313 (401)
T ss_dssp EEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHH
Confidence 3456899999887532 233555677999999999999886 4567777777766553
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]
Probab=84.05 E-value=0.39 Score=27.04 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=19.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHh
Q 035320 25 NQSTFDGNPLATAVAIASLNVIR 47 (67)
Q Consensus 25 h~~Tf~Gnpla~AAala~l~~i~ 47 (67)
.--||+.||.++.+|+.++..+.
T Consensus 17 IdDsYNAnP~Sm~aAl~~l~~~~ 39 (135)
T d1gg4a1 17 LDDSYNANVGSMTAAVQVLAEMP 39 (135)
T ss_dssp EECCSCCCHHHHHHHHHHHHHSS
T ss_pred EecCCcCCHHHHHHHHHHhhccC
Confidence 34799999999999999886553
