Citrus Sinensis ID: 035333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MTGEEMASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESDLLTDDNSATAVQKVVK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcc
Coil and Loop (DISEMBL)
mtgeemasgpagtKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQqesdlltddnsATAVQKVVK
Flexible Loop (DISEMBL)
mtgeemasgpagTKVLRFLYFVGAGFICTAAINKWRELERKSLQKkqqesdlltddnsatavqkvvk
Low Complexity Region (SEG)
MTGEEMASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESDLLTDDNSATAVQKVVK
Disordered region (IsUnstruct)
************TKVLRFLYFVGAGFICTAAINKWRE******************************
Disordered Region (DISOPRED)
**************VLRFLYFVGAGFICTAAINKWRE******************************
Disordered Region (DISEMBL)
**********AGTKVLRFLYFVGAGFICTAAINKWRELER*************TDDNSA********
Disordered Region (DISPRO)
*********PAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQE******************
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTGEEMASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESDLLTDDNSATAVQKVVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
224114776	71	predicted protein [Populus trichocarpa]	1.0	0.943	0.619	6e-16
359493770	58	PREDICTED: uncharacterized protein LOC10	0.746	0.862	0.690	2e-12
356544098	65	PREDICTED: uncharacterized protein LOC10	0.970	1.0	0.537	8e-11
297850096	69	hypothetical protein ARALYDRAFT_312664 [	0.925	0.898	0.470	1e-10
186478567	65	uncharacterized protein [Arabidopsis tha	0.865	0.892	0.529	1e-10
356549653	67	PREDICTED: uncharacterized protein LOC10	0.985	0.985	0.558	6e-10
242056021	69	hypothetical protein SORBIDRAFT_03g00235	0.522	0.507	0.628	3e-05
297719727	65	Os01g0206600 [Oryza sativa Japonica Grou	0.507	0.523	0.647	0.0002
238012768	68	unknown [Zea mays] gi|413947716|gb|AFW80	0.537	0.529	0.648	0.0002
226496505	97	uncharacterized protein LOC100276701 [Ze	0.537	0.371	0.648	0.0005

>gi|224114776|ref|XP_002316854.1| predicted protein [Populus trichocarpa] gi|222859919|gb|EEE97466.1| predicted protein [Populus trichocarpa]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 4/71 (5%)

Query: 1  MTGEEMASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKS-LQKKQQESDLLTD---D 56
          MT EE A+GPAG KVLR LYFVGAGFICT  INKWRE+ERKS L+++QQE  + +D    
Sbjct: 1  MTIEEAAAGPAGPKVLRLLYFVGAGFICTVGINKWREIERKSILEQQQQEKKMKSDFLPR 60

Query: 57 NSATAVQKVVK 67
          +S  +VQK +K
Sbjct: 61 SSTNSVQKAIK 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493770|ref|XP_003634663.1| PREDICTED: uncharacterized protein LOC100854863 [Vitis vinifera] gi|302142887|emb|CBI20182.3| unnamed protein product [Vitis vinifera]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 42/55 (76%), Gaps = 5/55 (9%)

Query: 1  MTGEEMASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESDLLTD 55
          M GEE   GPAG KVLR LYFVGAGFICTAAINKWR+L+RKS    QQ +D L +
Sbjct: 1  MIGEE--GGPAGPKVLRMLYFVGAGFICTAAINKWRDLQRKS---AQQHADQLPE 50

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544098|ref|XP_003540492.1| PREDICTED: uncharacterized protein LOC100808624 [Glycine max]

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 1  MTGEEMASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESDLLTDDNSAT 60
          MTGEE+ SGPAG K+LR + FVGA  ICTAAINK+RE ER ++ K+QQ  +   + + + 
Sbjct: 1  MTGEEI-SGPAGPKLLRLVSFVGAAVICTAAINKYREYERNTIIKQQQVVE-TRNSSESV 58

Query: 61 AVQKVVK 67
          AV K +K
Sbjct: 59 AVHKTLK 65

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850096|ref|XP_002892929.1| hypothetical protein ARALYDRAFT_312664 [Arabidopsis lyrata subsp. lyrata] gi|297338771|gb|EFH69188.1| hypothetical protein ARALYDRAFT_312664 [Arabidopsis lyrata subsp. lyrata]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 6  MASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESD------LLTDDNSA 59
          M  GP   K+LR +YFVGAGF+CT AINKWRE+ER SL K++QE +       L      
Sbjct: 2  MEEGPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQHGDAALLHQTPP 61

Query: 60 TAVQKVVK 67
           ++ K +K
Sbjct: 62 NSIHKAMK 69

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478567|ref|NP_001117299.1| uncharacterized protein [Arabidopsis thaliana] gi|332191400|gb|AEE29521.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 10/68 (14%)

Query: 6  MASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESD------LLTDDNSA 59
          M  GP   K+LR +YFVGAGF+CT AINKWRE+ER SL K++QE +      LL  D   
Sbjct: 2  MEEGPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRD--- 58

Query: 60 TAVQKVVK 67
           +VQK +K
Sbjct: 59 -SVQKAMK 65

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549653|ref|XP_003543206.1| PREDICTED: uncharacterized protein LOC100801381 [Glycine max]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 2/68 (2%)

Query: 1  MTGEEMASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESDLLTDDNS-A 59
          MTGEE+ SGPAG K+LR + FVGA  ICTAAINK+RE ER ++ K+QQ+  + T ++S +
Sbjct: 1  MTGEEI-SGPAGPKLLRLVSFVGAAVICTAAINKYREYERNTIIKQQQQQVVETHNSSES 59

Query: 60 TAVQKVVK 67
           AV K +K
Sbjct: 60 VAVPKTLK 67

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242056021|ref|XP_002457156.1| hypothetical protein SORBIDRAFT_03g002350 [Sorghum bicolor] gi|241929131|gb|EES02276.1| hypothetical protein SORBIDRAFT_03g002350 [Sorghum bicolor]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 28/35 (80%)

Query: 7  ASGPAGTKVLRFLYFVGAGFICTAAINKWRELERK 41
          A+G A +K+LRF+YFVGAG ICT AIN +R+ E K
Sbjct: 3  AAGEASSKLLRFMYFVGAGVICTKAINTYRDYEHK 37

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297719727|ref|NP_001172225.1| Os01g0206600 [Oryza sativa Japonica Group] gi|56201499|dbj|BAD72996.1| hypothetical protein [Oryza sativa Japonica Group] gi|56201735|dbj|BAD73092.1| hypothetical protein [Oryza sativa Japonica Group] gi|125524846|gb|EAY72960.1| hypothetical protein OsI_00832 [Oryza sativa Indica Group] gi|125569456|gb|EAZ10971.1| hypothetical protein OsJ_00814 [Oryza sativa Japonica Group] gi|215768684|dbj|BAH00913.1| unnamed protein product [Oryza sativa Japonica Group] gi|255672986|dbj|BAH90955.1| Os01g0206600 [Oryza sativa Japonica Group]

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 27/34 (79%)

Query: 8  SGPAGTKVLRFLYFVGAGFICTAAINKWRELERK 41
          +G A +K+LRFL FVGAG ICT AIN +R+ ERK
Sbjct: 5  AGEASSKLLRFLCFVGAGVICTKAINTYRDYERK 38

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238012768|gb|ACR37419.1| unknown [Zea mays] gi|413947716|gb|AFW80365.1| hypothetical protein ZEAMMB73_486504 [Zea mays]

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 28/37 (75%), Gaps = 1/37 (2%)

Query: 6  MAS-GPAGTKVLRFLYFVGAGFICTAAINKWRELERK 41
          MAS G A + +LRFLYFVGAG ICT AIN +R+ E K
Sbjct: 1  MASAGEAPSTLLRFLYFVGAGVICTKAINTYRDYEHK 37

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496505|ref|NP_001143898.1| uncharacterized protein LOC100276701 [Zea mays] gi|195629314|gb|ACG36298.1| hypothetical protein [Zea mays]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 28/37 (75%), Gaps = 1/37 (2%)

Query: 6  MAS-GPAGTKVLRFLYFVGAGFICTAAINKWRELERK 41
          MAS G A + +LRFLYFVGAG ICT AIN +R+ E K
Sbjct: 1  MASAGEAPSTLLRFLYFVGAGVICTKAINTYRDYEHK 37

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
TAIR|locus:4515102540	65	AT1G16916 "AT1G16916" [Arabido	0.925	0.953	0.531	2.4e-12

TAIR|locus:4515102540 AT1G16916 "AT1G16916" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query:     6 MASGPAGTKVLRFLYFVGAGFICTAAINKWRELERKSLQKKQQESDLLTDDN--SATAVQ 63
             M  GP   K+LR +YFVGAGF+CT AINKWRE+ER SL K++QE +   D       +VQ
Sbjct:     2 MEEGPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQ 61

Query:    64 KVVK 67
             K +K
Sbjct:    62 KAMK 65


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       67        67   0.00091  102 3  11 22  0.44    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  492 (52 KB)
  Total size of DFA:  86 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.71u 0.21s 9.92t   Elapsed:  00:00:01
  Total cpu time:  9.71u 0.21s 9.92t   Elapsed:  00:00:01
  Start:  Fri May 10 07:37:44 2013   End:  Fri May 10 07:37:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PF14142	46	YrzO: YrzO-like protein	89.23
PF06783	85	UPF0239: Uncharacterised protein family (UPF0239);	83.28

>PF14142 YrzO: YrzO-like protein

Probab=89.23  E-value=0.64  Score=28.00  Aligned_cols=25  Identities=44%  Similarity=0.841  Sum_probs=18.2

Q ss_pred             HHHhhhhhhhHH-HHHHHHHHHHHHHHHH
Q 035333           18 FLYFVGAGFICT-AAINKWRELERKSLQK   45 (67)
Q Consensus        18 ~~yFVGAg~icT-~aINk~re~Erks~~~   45 (67)
                      +++|+.+|+.|- +|||.-   -||.|-|
T Consensus         5 llff~a~gvacelaainrn---grk~ikq   30 (46)
T PF14142_consen    5 LLFFFAAGVACELAAINRN---GRKKIKQ   30 (46)
T ss_pred             HHHHHHHHHHHHHHHHhhh---hHHHHHH
Confidence            689999999996 578853   3555543

>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function

Probab=83.28  E-value=0.94  Score=29.75  Aligned_cols=22  Identities=50%  Similarity=0.742  Sum_probs=18.8

Q ss_pred             hhHHHHHHhhhhhh--hHHHHHHH
Q 035333           13 TKVLRFLYFVGAGF--ICTAAINK   34 (67)
Q Consensus        13 ~k~lR~~yFVGAg~--icT~aINk   34 (67)
                      ..|||.-.||||-|  ||-.||=-
T Consensus        19 e~llRYGLf~GAIFQliCilAiI~   42 (85)
T PF06783_consen   19 ENLLRYGLFVGAIFQLICILAIIL   42 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheee
Confidence            46899999999986  99999854

; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 39 ERKSLQKKQQESDLLTDDNS-ATAVQKVVK 67
          E+++L+K Q    L  DD++ A A++  ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 35.5 bits (81), Expect = 3e-04
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 31  AINKWRELERKSLQKKQQES 50
           +I KWRE +RK LQ+    S
Sbjct: 86  SIRKWREEQRKRLQELDAAS 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00