Citrus Sinensis ID: 035343

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MMLVCSDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWSYFNFSDY
Secondary Structure (PSIPRED)
cEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHEEHEHEEEcccc
Coil and Loop (DISEMBL)
mmlvcsdtgrkvddpEVLEAIRLIVINNLlqyhpesssqlamgvtfgvdppkqqVFAFWsyfnfsdy
Flexible Loop (DISEMBL)
mmlvcsdtgrkvddpeVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWSYFNFSDY
Low Complexity Region (SEG)
MMLVCSDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWSYFNFSDY
Disordered region (IsUnstruct)
**************PEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWSYFNF***
Disordered Region (DISOPRED)
***V****GRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWSYFNFSDY
Disordered Region (DISEMBL)
********GRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWSYFNFSDY
Disordered Region (DISPRO)
*MLVCSDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWSYFNFSD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMLVCSDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWSYFNFSDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q0J709	283	Unknown protein DS12 from	yes	no	0.716	0.169	0.645	2e-14
P83643	283	Unknown protein DS12 from	N/A	no	0.716	0.169	0.645	2e-14

>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 42/48 (87%)

Query: 8   TGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
           TGRK+ +PE+LEA+RL +INN++QYHPE+SSQLA+G TFG +PP + V
Sbjct: 140 TGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELV 187

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 42/48 (87%)

Query: 8   TGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
           TGRK+ +PE+LEA+RL +INN++QYHPE+SSQLA+G TFG +PP + V
Sbjct: 140 TGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELV 187

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
255564051	282	amino acid binding protein, putative [Ri	0.746	0.177	0.86	1e-18
359483143	291	PREDICTED: unknown protein DS12 from 2D-	0.746	0.171	0.8	2e-17
449439743	292	PREDICTED: unknown protein DS12 from 2D-	0.746	0.171	0.82	3e-17
449533134	224	PREDICTED: unknown protein DS12 from 2D-	0.746	0.223	0.82	4e-17
224110036	279	predicted protein [Populus trichocarpa]	0.716	0.172	0.833	5e-17
147800453	453	hypothetical protein VITISV_038929 [Viti	0.746	0.110	0.8	6e-17
118488105	150	unknown [Populus trichocarpa]	0.985	0.44	0.651	8e-17
388516485	293	unknown [Medicago truncatula]	0.910	0.208	0.677	2e-16
357467939	293	hypothetical protein MTR_4g007140 [Medic	0.910	0.208	0.677	2e-16
224097482	203	predicted protein [Populus trichocarpa]	0.716	0.236	0.833	3e-16

>gi|255564051|ref|XP_002523024.1| amino acid binding protein, putative [Ricinus communis] gi|223537746|gb|EEF39366.1| amino acid binding protein, putative [Ricinus communis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/50 (86%), Positives = 48/50 (96%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
           +DTGRKV+DPE+LEAIRL +INNLLQYHPESSSQLAMGV FGV+PPKQQV
Sbjct: 137 ADTGRKVEDPELLEAIRLTIINNLLQYHPESSSQLAMGVAFGVEPPKQQV 186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483143|ref|XP_003632910.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Vitis vinifera] gi|298204773|emb|CBI25271.3| unnamed protein product [Vitis vinifera]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/50 (80%), Positives = 46/50 (92%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
           +DTGRKV+DPE+LEAIRL +INN+LQYHPESS QLAMGV FG+ PPKQQV
Sbjct: 146 ADTGRKVEDPELLEAIRLTIINNMLQYHPESSEQLAMGVAFGITPPKQQV 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439743|ref|XP_004137645.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/50 (82%), Positives = 46/50 (92%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
           +DTGRKVDDPE+LEAIRL +INNL+QYHPESS+QLAMG  FGV PPKQQV
Sbjct: 147 ADTGRKVDDPELLEAIRLTIINNLIQYHPESSAQLAMGAAFGVVPPKQQV 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533134|ref|XP_004173532.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like, partial [Cucumis sativus]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/50 (82%), Positives = 46/50 (92%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
           +DTGRKVDDPE+LEAIRL +INNL+QYHPESS+QLAMG  FGV PPKQQV
Sbjct: 147 ADTGRKVDDPELLEAIRLTIINNLIQYHPESSAQLAMGAAFGVVPPKQQV 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110036|ref|XP_002315393.1| predicted protein [Populus trichocarpa] gi|222864433|gb|EEF01564.1| predicted protein [Populus trichocarpa]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 45/48 (93%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQ 53
           + TGRKVDDPE+LEAIRL +INNLLQYHPESSSQLAMG+ FGV+PPKQ
Sbjct: 135 ASTGRKVDDPELLEAIRLTIINNLLQYHPESSSQLAMGIAFGVEPPKQ 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800453|emb|CAN70848.1| hypothetical protein VITISV_038929 [Vitis vinifera]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 46/50 (92%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
           +DTGRKV+DPE+LEAIRL +INN+LQYHPESS QLAMGV FG+ PPKQQV
Sbjct: 146 ADTGRKVEDPELLEAIRLTIINNMLQYHPESSEQLAMGVAFGITPPKQQV 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488105|gb|ABK95872.1| unknown [Populus trichocarpa]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 49/66 (74%)

Query: 1  MMLVCSDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQVFAFWS 60
          M L  S TGRKVDDPE+LEAIRL +INNLLQYHPESSSQLAMG+ FGV+ PKQ      +
Sbjct: 1  MELFFSSTGRKVDDPELLEAIRLTIINNLLQYHPESSSQLAMGIAFGVEQPKQVDVDIAT 60

Query: 61 YFNFSD 66
          +    D
Sbjct: 61 HIKVKD 66

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516485|gb|AFK46304.1| unknown [Medicago truncatula]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/62 (67%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV-FAFWSYFNF 64
           +DTGRKV+DPE+LEAIRL +INNL+QYHPESSSQLAMG  FG+ PPK+QV     ++ N 
Sbjct: 148 ADTGRKVEDPELLEAIRLTIINNLIQYHPESSSQLAMGAAFGLLPPKEQVDVDIATHINI 207

Query: 65  SD 66
           SD
Sbjct: 208 SD 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467939|ref|XP_003604254.1| hypothetical protein MTR_4g007140 [Medicago truncatula] gi|355505309|gb|AES86451.1| hypothetical protein MTR_4g007140 [Medicago truncatula]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/62 (67%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV-FAFWSYFNF 64
           +DTGRKV+DPE+LEAIRL +INNL+QYHPESSSQLAMG  FG+ PPK+QV     ++ N 
Sbjct: 148 ADTGRKVEDPELLEAIRLTIINNLIQYHPESSSQLAMGAAFGLLPPKEQVDVDIATHINI 207

Query: 65  SD 66
           SD
Sbjct: 208 SD 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097482|ref|XP_002310954.1| predicted protein [Populus trichocarpa] gi|222850774|gb|EEE88321.1| predicted protein [Populus trichocarpa]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 44/48 (91%)

Query: 6   SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQ 53
           S TGRKVDDPE+LEAIRL +INNLLQYHPESSSQLAMG+ FGV+ PKQ
Sbjct: 135 SSTGRKVDDPELLEAIRLTIINNLLQYHPESSSQLAMGIAFGVEQPKQ 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.746	0.172	0.72	3.3e-15
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.731	0.162	0.653	1.1e-13

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query:     6 SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
             +D+GRKV+DPE+LEAIRL VINNLL++HPESSSQLAMG  FGV PP + +
Sbjct:   145 ADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPI 194

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 32/49 (65%), Positives = 42/49 (85%)

Query:     7 DTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGVTFGVDPPKQQV 55
             DTGRKV+DP++LE IRL +INNLL+YHPE S QLAMG TFG+  P++++
Sbjct:   157 DTGRKVEDPDLLEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKI 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       67        67   0.00091  102 3  11 22  0.41    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  505 (54 KB)
  Total size of DFA:  95 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.97u 0.20s 8.17t   Elapsed:  00:00:00
  Total cpu time:  7.97u 0.20s 8.17t   Elapsed:  00:00:00
  Start:  Fri May 10 07:43:46 2013   End:  Fri May 10 07:43:46 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.88
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	94.91
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	94.64
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	93.71
PF11523	76	DUF3223: Protein of unknown function (DUF3223); In	93.36
PF11333	83	DUF3135: Protein of unknown function (DUF3135); In	90.01
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	83.95
PRK05007	884	PII uridylyl-transferase; Provisional	80.3
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	80.06

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.88  E-value=0.00071  Score=41.70  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=23.4

Q ss_pred             CceeecCCCCccCCHHHHHHHHHHHHH
Q 035343            1 MMLVCSDTGRKVDDPEVLEAIRLIVIN   27 (67)
Q Consensus         1 ~~It~a~Tg~KV~~~e~LE~IRlTIiN   27 (67)
                      |||+|. .|+||.||+++++||.++..
T Consensus        45 FyV~d~-~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895          45 FHVTDQ-LGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             EEEECC-CCCCCCCHHHHHHHHHHhcc
Confidence            799988 89999999999999998753

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.91  E-value=0.036  Score=34.43  Aligned_cols=26  Identities=8%  Similarity=0.065  Sum_probs=22.3

Q ss_pred             CceeecCCCCccCCHHHHHHHHHHHHH
Q 035343            1 MMLVCSDTGRKVDDPEVLEAIRLIVIN   27 (67)
Q Consensus         1 ~~It~a~Tg~KV~~~e~LE~IRlTIiN   27 (67)
                      |||++. .|+|+.+++++|+||..+..
T Consensus        45 FyV~d~-~g~kl~~~~~~~~l~~~L~~   70 (75)
T cd04897          45 YYIRHK-DGRTLSTEGERQRVIKCLEA   70 (75)
T ss_pred             EEEEcC-CCCccCCHHHHHHHHHHHHH
Confidence            788776 59999999999999988764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.64  E-value=0.053  Score=31.84  Aligned_cols=29  Identities=31%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             CceeecCCCCccCCHHHHHHHHHHHHHHH
Q 035343            1 MMLVCSDTGRKVDDPEVLEAIRLIVINNL   29 (67)
Q Consensus         1 ~~It~a~Tg~KV~~~e~LE~IRlTIiNNl   29 (67)
                      |+|++.++|.++.++++++.||.+|.+-|
T Consensus        44 f~V~d~~~~~~~~~~~~~~~i~~~L~~~l   72 (74)
T cd04925          44 IYVRDEETGAPIDDPIRLASIEDRLDNVL   72 (74)
T ss_pred             EEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence            68888887888999999999999987654

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=93.71  E-value=0.083  Score=32.81  Aligned_cols=28  Identities=18%  Similarity=0.413  Sum_probs=24.1

Q ss_pred             CceeecCCCCccCCHHHHHHHHHHHHHHHH
Q 035343            1 MMLVCSDTGRKVDDPEVLEAIRLIVINNLL   30 (67)
Q Consensus         1 ~~It~a~Tg~KV~~~e~LE~IRlTIiNNll   30 (67)
                      |||  ...|+|+.+++++++||..+...|.
T Consensus        46 Fyv--~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896          46 FIV--QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             EEE--eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            678  3668999999999999999988774

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF11523 DUF3223: Protein of unknown function (DUF3223); InterPro: IPR021602 This family of proteins has no known function

Probab=93.36  E-value=0.067  Score=33.05  Aligned_cols=33  Identities=27%  Similarity=0.698  Sum_probs=22.2

Q ss_pred             CCCCccCCHHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343            7 DTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGV   44 (67)
Q Consensus         7 ~Tg~KV~~~e~LE~IRlTIiNNll~yHPEsse~la~G~   44 (67)
                      ..|+++.+++     -..++..||+|||+..+.+..|.
T Consensus         9 ~~g~~l~~~d-----~~~~l~~ll~~HP~~~~KiG~Gi   41 (76)
T PF11523_consen    9 PDGERLSEED-----EKSVLEALLKYHPEAEEKIGCGI   41 (76)
T ss_dssp             -TTEE--HHH------HHHHHHHHHTSTTHHHHHTT-E
T ss_pred             CCcCCcCHHH-----HHHHHHHHHHhCCcHHHhhcCCe
Confidence            3455555333     35788999999999999998875

; PDB: 2K0M_A.

>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria

Probab=90.01  E-value=0.34  Score=30.85  Aligned_cols=26  Identities=31%  Similarity=0.631  Sum_probs=23.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhhCccchh
Q 035343           13 DDPEVLEAIRLIVINNLLQYHPESSS   38 (67)
Q Consensus        13 ~~~e~LE~IRlTIiNNll~yHPEsse   38 (67)
                      .|||.||++|...|.+++.-.||.-.
T Consensus        15 ~dPe~fe~lr~~~~ee~I~~a~~~~q   40 (83)
T PF11333_consen   15 NDPEAFEQLRQELIEEMIESAPEEMQ   40 (83)
T ss_pred             hCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999999999999999988653

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=83.95  E-value=1.4  Score=25.29  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=20.5

Q ss_pred             CceeecCCCCccCCHHHHHHHHHHHHH
Q 035343            1 MMLVCSDTGRKVDDPEVLEAIRLIVIN   27 (67)
Q Consensus         1 ~~It~a~Tg~KV~~~e~LE~IRlTIiN   27 (67)
                      |+|++. .|.++.+++++++||..|.+
T Consensus        46 F~v~~~-~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900          46 FVVLDP-DGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEECC-CCCCCChHHHHHHHHHHHHh
Confidence            677764 56678899999999988865

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05007 PII uridylyl-transferase; Provisional

Probab=80.30  E-value=1.8  Score=36.32  Aligned_cols=27  Identities=19%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             CceeecCCCCccCCHHHHHHHHHHHHHHH
Q 035343            1 MMLVCSDTGRKVDDPEVLEAIRLIVINNL   29 (67)
Q Consensus         1 ~~It~a~Tg~KV~~~e~LE~IRlTIiNNl   29 (67)
                      |||++. +|+|++ ++++++||..+++-|
T Consensus       852 FyV~~~-~g~~l~-~~~~~~l~~~L~~~l  878 (884)
T PRK05007        852 FILATA-DRRALN-EELQQELRQRLTEAL  878 (884)
T ss_pred             EEEEcC-CCCcCC-HHHHHHHHHHHHHHH
Confidence            799877 889999 899999999999887

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=80.06  E-value=2.8  Score=24.78  Aligned_cols=27  Identities=7%  Similarity=-0.038  Sum_probs=20.3

Q ss_pred             CceeecCCCCccCCHHHHHHHHHHHHHHH
Q 035343            1 MMLVCSDTGRKVDDPEVLEAIRLIVINNL   29 (67)
Q Consensus         1 ~~It~a~Tg~KV~~~e~LE~IRlTIiNNl   29 (67)
                      |||+|. .|. +.+++++++||..+.+-|
T Consensus        45 F~V~d~-~~~-~~~~~~~~~l~~~L~~~L   71 (76)
T cd04927          45 FFITDA-REL-LHTKKRREETYDYLRAVL   71 (76)
T ss_pred             EEEeCC-CCC-CCCHHHHHHHHHHHHHHH
Confidence            678877 333 678899999999887644

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
2k0m_A	104	Uncharacterized protein; structural genomics, unkn	89.16
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	81.24
2kl4_A	118	BH2032 protein; NB7804A, structural genomics, PSI-	80.81
2oc6_A	124	YDHG protein; secretion chaperone-like fold, struc	80.33

>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}

Probab=89.16  E-value=0.19  Score=32.16  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=24.4

Q ss_pred             cCCCCccCCHHHHHHHHHHHHHHHHhhCccchhhhhccc
Q 035343            6 SDTGRKVDDPEVLEAIRLIVINNLLQYHPESSSQLAMGV   44 (67)
Q Consensus         6 a~Tg~KV~~~e~LE~IRlTIiNNll~yHPEsse~la~G~   44 (67)
                      ...|++|.+.|.      +++-.||+||||..+.+..|.
T Consensus        31 y~~g~~l~~~d~------~~l~~lL~~HP~~~~KiG~Gi   63 (104)
T 2k0m_A           31 YRPGDIVSTVDG------AFLVEALKRHPDATSKIGPGV   63 (104)
T ss_dssp             SCTTEECCHHHH------HHHHHHHHTSTTHHHHHTTCE
T ss_pred             CCCCCccCHHHH------HHHHHHHHhCCcHHHhcCCCc
Confidence            345677766532      568889999999999987664

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=81.24  E-value=0.27  Score=31.40  Aligned_cols=9  Identities=67%  Similarity=1.147  Sum_probs=7.5

Q ss_pred             HhhCccchh
Q 035343           30 LQYHPESSS   38 (67)
Q Consensus        30 l~yHPEsse   38 (67)
                      +|+|||++.
T Consensus       182 vQFHPE~s~  190 (211)
T 4gud_A          182 VQFHPERSS  190 (211)
T ss_dssp             ESSCGGGSH
T ss_pred             EEccCEecC
Confidence            699999863

>2kl4_A BH2032 protein; NB7804A, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; NMR {Bacillus halodurans}

Probab=80.81  E-value=0.49  Score=29.00  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             CHHHHHHHHHHHHHHHHhhCccchhhhhccccc
Q 035343           14 DPEVLEAIRLIVINNLLQYHPESSSQLAMGVTF   46 (67)
Q Consensus        14 ~~e~LE~IRlTIiNNll~yHPEsse~la~G~~f   46 (67)
                      .-+.|+++|..|..+.    |+..|.+.+|.++
T Consensus        19 ~r~~l~~Lr~~I~~~~----p~l~E~ikwg~P~   47 (118)
T 2kl4_A           19 HRDRTEEILSWVAATF----PNLEPQMKWNTPM   47 (118)
T ss_dssp             GHHHHHHHHHHHHHHC----TTCEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHC----CCcceeeEcCcCe
Confidence            3468999999998875    9999999999875

>2oc6_A YDHG protein; secretion chaperone-like fold, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Bacillus subtilis} SCOP: d.198.4.1

Probab=80.33  E-value=0.53  Score=29.19  Aligned_cols=28  Identities=14%  Similarity=0.214  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHhhCccchhhhhccccc
Q 035343           15 PEVLEAIRLIVINNLLQYHPESSSQLAMGVTF   46 (67)
Q Consensus        15 ~e~LE~IRlTIiNNll~yHPEsse~la~G~~f   46 (67)
                      -+.|+++|..|..+.    |+..|.+.+|.++
T Consensus        18 r~~l~~Lr~lI~~~~----P~l~E~ikwg~P~   45 (124)
T 2oc6_A           18 RERTEEVLTWIKNKY----PNLHTEIKWNQPM   45 (124)
T ss_dssp             HHHHHHHHHHHHHHS----TTSEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHC----CCCceEeEcCCCe
Confidence            468999999998875    9999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	89.23
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	88.77
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	86.59
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	86.56
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	85.93
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	81.27

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=89.23  E-value=0.036  Score=32.50  Aligned_cols=8  Identities=63%  Similarity=1.041  Sum_probs=6.6

Q ss_pred             HhhCccch
Q 035343           30 LQYHPESS   37 (67)
Q Consensus        30 l~yHPEss   37 (67)
                      +|+|||.|
T Consensus       173 vQFHPEkS  180 (195)
T d1ka9h_         173 PQFHPEKS  180 (195)
T ss_dssp             ESSCTTSS
T ss_pred             EeCCcccc
Confidence            69999955

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=88.77  E-value=0.038  Score=33.69  Aligned_cols=9  Identities=67%  Similarity=1.165  Sum_probs=6.8

Q ss_pred             HhhCcc-chh
Q 035343           30 LQYHPE-SSS   38 (67)
Q Consensus        30 l~yHPE-sse   38 (67)
                      +||||| |++
T Consensus       175 vQFHPEkS~~  184 (200)
T d1k9vf_         175 FQFHPEKSSK  184 (200)
T ss_dssp             ESSBGGGSHH
T ss_pred             EeCCCcccch
Confidence            499999 644

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.59  E-value=0.057  Score=33.09  Aligned_cols=8  Identities=50%  Similarity=1.136  Sum_probs=7.1

Q ss_pred             HhhCccch
Q 035343           30 LQYHPESS   37 (67)
Q Consensus        30 l~yHPEss   37 (67)
                      +|||||++
T Consensus       176 vQFHPE~s  183 (205)
T d1gpma2         176 VQFHPEVT  183 (205)
T ss_dssp             ESBCTTST
T ss_pred             EEeecccC
Confidence            79999986

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.56  E-value=0.057  Score=32.45  Aligned_cols=8  Identities=50%  Similarity=1.120  Sum_probs=7.0

Q ss_pred             HhhCccch
Q 035343           30 LQYHPESS   37 (67)
Q Consensus        30 l~yHPEss   37 (67)
                      +|||||++
T Consensus       163 vQFHPE~s  170 (188)
T d1wl8a1         163 VQFHPEVA  170 (188)
T ss_dssp             ESSCTTST
T ss_pred             EEcCCccC
Confidence            69999986

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.93  E-value=0.062  Score=32.68  Aligned_cols=8  Identities=63%  Similarity=1.165  Sum_probs=6.8

Q ss_pred             HhhCccch
Q 035343           30 LQYHPESS   37 (67)
Q Consensus        30 l~yHPEss   37 (67)
                      +|||||++
T Consensus       172 vQFHPE~~  179 (195)
T d1qdlb_         172 VQFHPESV  179 (195)
T ss_dssp             ESSBTTST
T ss_pred             EEcCCCCC
Confidence            69999965

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=81.27  E-value=0.13  Score=31.80  Aligned_cols=8  Identities=63%  Similarity=1.140  Sum_probs=6.6

Q ss_pred             HhhCccch
Q 035343           30 LQYHPESS   37 (67)
Q Consensus        30 l~yHPEss   37 (67)
                      +||||||.
T Consensus       166 vQFHPEs~  173 (192)
T d1i7qb_         166 FQFHPESI  173 (192)
T ss_dssp             ESSCTTST
T ss_pred             EEeCCCcC
Confidence            69999973