Citrus Sinensis ID: 035393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-------
Protein Sequence
MAGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEcHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mageasmlkflkpksrlqpvdvQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK
Flexible Loop (DISEMBL)
mageasmlkflkpksrlqPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK
Low Complexity Region (SEG)
MAGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK
Disordered region (IsUnstruct)
*****************QPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFL******
Disordered Region (DISOPRED)
********************DVQAAAFWGVAAVSGALYLIQPFDWLKK**L******
Disordered Region (DISEMBL)
MAGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK
Disordered Region (DISPRO)
*******LKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	57	2.2.26 [Sep-21-2011]
P48505	62	Ubiquinol-cytochrome c re	N/A	no	0.982	0.903	0.607	6e-07

>sp|P48505|UCR11_SOLTU Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE=1 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query: 2  AGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK 57
          A    + KFL+PK R Q  D+QAAA WGVAAV+GAL++IQP+D+L+KTF+EK EE+
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEEE 61


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,657,675
Number of Sequences: 539616
Number of extensions: 483978
Number of successful extensions: 971
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 1
length of query: 57
length of database: 191,569,459
effective HSP length: 30
effective length of query: 27
effective length of database: 175,380,979
effective search space: 4735286433
effective search space used: 4735286433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain.
Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
224145008	59	predicted protein [Populus trichocarpa]	1.0	0.966	0.661	2e-14
356516225	52	PREDICTED: ubiquinol-cytochrome c reduct	0.789	0.865	0.711	6e-10
356509088	52	PREDICTED: uncharacterized protein LOC10	0.789	0.865	0.688	6e-10
242051302	61	hypothetical protein SORBIDRAFT_02g04302	0.982	0.918	0.517	1e-09
326518062	60	predicted protein [Hordeum vulgare subsp	0.929	0.883	0.574	2e-09
115474091	61	Os07g0680300 [Oryza sativa Japonica Grou	0.947	0.885	0.518	2e-09
195619556	61	ubiquinol-cytochrome c reductase complex	0.982	0.918	0.5	3e-09
195609334	61	ubiquinol-cytochrome c reductase complex	0.982	0.918	0.5	3e-09
194692718	62	unknown [Zea mays] gi|195638680|gb|ACG38	0.964	0.887	0.509	4e-09
225448725	59	PREDICTED: ubiquinol-cytochrome c reduct	0.964	0.932	0.690	4e-09

>gi|224145008|ref|XP_002325493.1| predicted protein [Populus trichocarpa] gi|118482907|gb|ABK93367.1| unknown [Populus trichocarpa] gi|118483491|gb|ABK93644.1| unknown [Populus trichocarpa] gi|118487244|gb|ABK95450.1| unknown [Populus trichocarpa] gi|118488463|gb|ABK96046.1| unknown [Populus trichocarpa] gi|222862368|gb|EEE99874.1| predicted protein [Populus trichocarpa]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 47/59 (79%), Gaps = 2/59 (3%)

Query: 1  MAGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEK--SEEK 57
          MAGE +M KFL P+ RLQ  D+Q AAFWGVAA + AL+L+QPFDW+KKTF EK  +EEK
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEKANTEEK 59

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516225|ref|XP_003526796.1| PREDICTED: ubiquinol-cytochrome c reductase complex 6.7 kDa protein-like [Glycine max]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 36/45 (80%)

Query: 11 LKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSE 55
          L  + RLQP DV+AAA WGV A +GALYLIQP+ WLKKTFLEK E
Sbjct: 4  LPARLRLQPTDVKAAALWGVTAATGALYLIQPWGWLKKTFLEKPE 48

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509088|ref|XP_003523284.1| PREDICTED: uncharacterized protein LOC100811454 [Glycine max]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 37/45 (82%)

Query: 11 LKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSE 55
          L  + RLQP DV+AAA WGV AV+GALYL+QP+ WLKKTFLEK +
Sbjct: 4  LPARIRLQPTDVKAAALWGVTAVTGALYLVQPWGWLKKTFLEKPD 48

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051302|ref|XP_002463395.1| hypothetical protein SORBIDRAFT_02g043020 [Sorghum bicolor] gi|241926772|gb|EER99916.1| hypothetical protein SORBIDRAFT_02g043020 [Sorghum bicolor]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 2  AGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK 57
          A  + + +F+ P+SR Q  D+ AAA WGV A +  LYL+QPFDW+KKTF EK E +
Sbjct: 5  ASSSGLFRFVSPRSRPQSTDIVAAASWGVFAGTAGLYLVQPFDWIKKTFFEKPEPE 60

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518062|dbj|BAK07283.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 2  AGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSE 55
          A  +++ +FL  + R+QP DV A A WGVAA S A+YL+QPFDW+KKTF EK E
Sbjct: 5  ASSSTLSRFLSSR-RIQPADVTALATWGVAAGSAAIYLVQPFDWIKKTFFEKPE 57

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115474091|ref|NP_001060644.1| Os07g0680300 [Oryza sativa Japonica Group] gi|113612180|dbj|BAF22558.1| Os07g0680300 [Oryza sativa Japonica Group] gi|218200264|gb|EEC82691.1| hypothetical protein OsI_27348 [Oryza sativa Indica Group] gi|222637693|gb|EEE67825.1| hypothetical protein OsJ_25595 [Oryza sativa Japonica Group]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 2  AGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSE 55
          A  + + +F+ P+ R Q  D+ AAA WGV A + A+YL+QPFDW+KKTF EK E
Sbjct: 5  ASSSGLFRFISPRRRPQSTDIAAAATWGVFAGTAAIYLVQPFDWIKKTFFEKPE 58

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195619556|gb|ACG31608.1| ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Zea mays] gi|195620534|gb|ACG32097.1| ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Zea mays] gi|195626768|gb|ACG35214.1| ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Zea mays]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 2  AGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK 57
          A  + + +F+ P+SR Q  D+ AAA WGV A +  LYL+QPFDW+KKTF +K E +
Sbjct: 5  ASSSGLFRFVSPRSRPQSTDIVAAASWGVFAGTAGLYLVQPFDWIKKTFFDKPEPE 60

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195609334|gb|ACG26497.1| ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Zea mays] gi|195659251|gb|ACG49093.1| ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Zea mays] gi|414888122|tpg|DAA64136.1| TPA: ubiquinol-cytochrome c reductase complex protein [Zea mays]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 2  AGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK 57
          A  + + +F+ P+SR Q  D+ AAA WGV A +  LYL+QPFDW+KKTF +K E +
Sbjct: 5  ASSSGLFRFVSPRSRPQSTDIVAAASWGVFAGTAGLYLVQPFDWIKKTFFQKPEPE 60

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194692718|gb|ACF80443.1| unknown [Zea mays] gi|195638680|gb|ACG38808.1| ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Zea mays] gi|414591193|tpg|DAA41764.1| TPA: Ubiquinol-cytochrome c reductase complex protein [Zea mays]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 2  AGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEE 56
          A  + + +F+ P+SR Q  D+ AAA WGV A +  LYL+QPFDW+KKTF EK  +
Sbjct: 5  ASSSGLFRFVSPRSRPQSTDIVAAASWGVFAGTAGLYLVQPFDWIKKTFFEKPPQ 59

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448725|ref|XP_002280954.1| PREDICTED: ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Vitis vinifera]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 45/55 (81%)

Query: 1  MAGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSE 55
          M+  ++M KFLKP  R QPVD+QAAA WGVA V+ ALYL+QPFDWLKKTFLEK +
Sbjct: 1  MSSGSAMFKFLKPSVRPQPVDIQAAAAWGVAGVTTALYLVQPFDWLKKTFLEKPD 55

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
TAIR|locus:505006312	57	AT2G40765 "AT2G40765" [Arabido	0.964	0.964	0.508	3.1e-12

TAIR|locus:505006312 AT2G40765 "AT2G40765" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 30/59 (50%), Positives = 46/59 (77%)

Query:     1 MAGEASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEK--SEEK 57
             MAG + +L  +KPK  +Q +D+QAAA WG+AA +GA++++QPF W+KKTF++   +EEK
Sbjct:     1 MAGTSGLLNAVKPK--IQTIDIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPPPTEEK 57


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       57        57   0.00091  102 3  11 22  0.47    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  433 (46 KB)
  Total size of DFA:  76 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.31u 0.13s 6.44t   Elapsed:  00:00:00
  Total cpu time:  6.31u 0.13s 6.44t   Elapsed:  00:00:00
  Start:  Mon May 20 18:02:20 2013   End:  Mon May 20 18:02:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48505	UCR11_SOLTU	No assigned EC number	0.6071	0.9824	0.9032	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIX1656 SubName- Full=Putative uncharacterized protein; (59 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	57
PF09796	64	QCR10: Ubiquinol-cytochrome-c reductase complex su	94.8
PF08997	56	UCR_6-4kD: Ubiquinol-cytochrome C reductase comple	90.06
TIGR03063	29	srtB_target sortase B cell surface sorting signal.	81.48

>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III)

Probab=94.80  E-value=0.02  Score=34.48  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=28.6

Q ss_pred             HHHHHHhhhhhhhhheeeeechhHHHHHhhcc
Q 035393           22 VQAAAFWGVAAVSGALYLIQPFDWLKKTFLEK   53 (57)
Q Consensus        22 i~aaA~WGvaa~~~alwLVQPfDwikktf~ek   53 (57)
                      ...+|+||++++++++..+--+-=++++++.|
T Consensus        14 ~p~~a~wG~aa~~~v~~f~~~vPr~q~dil~K   45 (64)
T PF09796_consen   14 GPNLALWGGAAGAAVLFFTSGVPRFQRDILQK   45 (64)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHh
Confidence            45789999999999999999998888888877

This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].

>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6

Probab=90.06  E-value=0.13  Score=30.62  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             hhHHHHHHhhhhhhhhheeeee
Q 035393           20 VDVQAAAFWGVAAVSGALYLIQ   41 (57)
Q Consensus        20 tDi~aaA~WGvaa~~~alwLVQ   41 (57)
                      .=+.+++.||.+++++.+|+++
T Consensus        16 ~w~ps~~~~G~~~~l~lvy~TD   37 (56)
T PF08997_consen   16 NWIPSAAAWGAAGGLALVYFTD   37 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhchhHHHHhhhhhhheeeecc
Confidence            3467899999999999999997

4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....

>TIGR03063 srtB_target sortase B cell surface sorting signal

Probab=81.48  E-value=0.67  Score=24.46  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             CChhhHHHHHHhhhhhhhhheeee
Q 035393           17 LQPVDVQAAAFWGVAAVSGALYLI   40 (57)
Q Consensus        17 pQ~tDi~aaA~WGvaa~~~alwLV   40 (57)
                      ||+.|-..+++|++..+..+++|+
T Consensus         2 PkT~D~a~i~ly~~l~~~s~~~Li   25 (29)
T TIGR03063         2 PKTGDSAQIGLYAVLFLGSGLFLI   25 (29)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHh
Confidence            899999999999999988888875

Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	57
2fyu_K	56	Ubiquinol-cytochrome C reductase complex 6.4 kDa;	93.7

>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*

Probab=93.70  E-value=0.016  Score=33.34  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=19.1

Q ss_pred             HHHHHHhhhhhhhhheeeeec
Q 035393           22 VQAAAFWGVAAVSGALYLIQP   42 (57)
Q Consensus        22 i~aaA~WGvaa~~~alwLVQP   42 (57)
                      +-+++.||.+++++++|++++
T Consensus        18 ~psa~~~Gaaa~v~~ly~tdw   38 (56)
T 2fyu_K           18 VPTASLWGAVGAVGLVWATDW   38 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhhhhhhhhhheeeeccH
Confidence            568999999999999999994

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	57
d2fyuk1	53	Subunit XI (6.4 kDa protein) of cytochrome bc1 com	86.15

>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.15  E-value=0.1  Score=28.77  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=18.1

Q ss_pred             hhHHHHHHhhhhhhhhheeee
Q 035393           20 VDVQAAAFWGVAAVSGALYLI   40 (57)
Q Consensus        20 tDi~aaA~WGvaa~~~alwLV   40 (57)
                      +=|-+++.||.+++++.+|.+
T Consensus        16 ~wips~~~~G~a~gl~lvy~T   36 (53)
T d2fyuk1          16 NWVPTASLWGAVGAVGLVWAT   36 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhheeeeeee
Confidence            346789999999999999976