Citrus Sinensis ID: 035414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-------
Protein Sequence
MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI
Secondary Structure (PSIPRED)
cccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEc
Coil and Loop (DISEMBL)
mpfrkiveveppsplryLMGAVIMMIGVVLPVGYmmfrnkrvpstssyskqtnkvli
Flexible Loop (DISEMBL)
mpfrkiveveppsplRYLMGAVIMMIGVVLPVGYMMFRnkrvpstssyskqtnkvli
Low Complexity Region (SEG)
MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI
Disordered region (IsUnstruct)
*************PLRYLMGAVIMMIGVVLPVGYMMFRN******************
Disordered Region (DISOPRED)
***RKI*EVEPPSPLRYLMGAVIMMIGVVLPVGYMMFR************QTNKVLI
Disordered Region (DISEMBL)
MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRV***************
Disordered Region (DISPRO)
*PFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYS**T*****
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
356563342	94	PREDICTED: uncharacterized protein LOC10	1.0	0.606	0.877	5e-21
356514374	57	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.877	9e-21
357476821	57	hypothetical protein MTR_4g100770 [Medic	1.0	1.0	0.842	7e-20
359495986	57	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.842	1e-19
297804508	57	predicted protein [Arabidopsis lyrata su	1.0	1.0	0.824	3e-19
357476819	57	hypothetical protein MTR_4g100770 [Medic	1.0	1.0	0.824	4e-19
30683760	57	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.807	8e-19
255631680	52	unknown [Glycine max]	0.912	1.0	0.846	2e-17
224071109	52	predicted protein [Populus trichocarpa]	0.912	1.0	0.807	1e-16
238480764	57	uncharacterized protein [Arabidopsis tha	0.912	0.912	0.788	4e-16

>gi|356563342|ref|XP_003549923.1| PREDICTED: uncharacterized protein LOC100527157 [Glycine max]

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/57 (87%), Positives = 54/57 (94%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI 57
          MP R +VEVEPPSPLRYL+GA +MMIGVVLPVGYMMFRNKRVPS+SSYSKQTNKVLI
Sbjct: 38 MPIRSLVEVEPPSPLRYLIGAAVMMIGVVLPVGYMMFRNKRVPSSSSYSKQTNKVLI 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514374|ref|XP_003525881.1| PREDICTED: uncharacterized protein LOC100527130 [Glycine max]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/57 (87%), Positives = 54/57 (94%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI 57
          MP R +VEVEPPSPLRYL+GA +MMIGVVLPVGYMMFRNKRVPS+SSYSKQTNKVLI
Sbjct: 1  MPIRSLVEVEPPSPLRYLIGAAVMMIGVVLPVGYMMFRNKRVPSSSSYSKQTNKVLI 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476821|ref|XP_003608696.1| hypothetical protein MTR_4g100770 [Medicago truncatula] gi|355509751|gb|AES90893.1| hypothetical protein MTR_4g100770 [Medicago truncatula]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 53/57 (92%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI 57
          MP R  +EVEPPSPLRYL+GA +MMIGVVLPVGYMMFRNKRVPS+SSY+KQTNKVLI
Sbjct: 1  MPIRSFLEVEPPSPLRYLIGAAVMMIGVVLPVGYMMFRNKRVPSSSSYTKQTNKVLI 57

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495986|ref|XP_003635127.1| PREDICTED: uncharacterized protein LOC100247746 [Vitis vinifera]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 54/57 (94%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI 57
          MP R+++EVEPPSP RY+MGA+IMMIGVVLPVGYMMFRNKRVPS+SSYSKQTNK LI
Sbjct: 1  MPVRRVLEVEPPSPFRYVMGALIMMIGVVLPVGYMMFRNKRVPSSSSYSKQTNKGLI 57

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804508|ref|XP_002870138.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315974|gb|EFH46397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 53/57 (92%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI 57
          MPF+ ++EVEPPS LRYL+GA +MMIGVVLPVGYMMFRNKRVP +SSYSKQTNKVLI
Sbjct: 1  MPFKTVIEVEPPSLLRYLIGAAVMMIGVVLPVGYMMFRNKRVPFSSSYSKQTNKVLI 57

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476819|ref|XP_003608695.1| hypothetical protein MTR_4g100770 [Medicago truncatula] gi|355509750|gb|AES90892.1| hypothetical protein MTR_4g100770 [Medicago truncatula]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 52/57 (91%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI 57
          M  R  +EVEPPSPLRYL+GA +MMIGVVLPVGYMMFRNKRVPS+SSY+KQTNKVLI
Sbjct: 1  MQIRSFLEVEPPSPLRYLIGAAVMMIGVVLPVGYMMFRNKRVPSSSSYTKQTNKVLI 57

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683760|ref|NP_849396.1| uncharacterized protein [Arabidopsis thaliana] gi|26451302|dbj|BAC42752.1| unknown protein [Arabidopsis thaliana] gi|332658386|gb|AEE83786.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 53/57 (92%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI 57
          MPF+ ++EVEPPS LRYL+G+ +MMIGVVLPVGYMMFRNKRVP +SSYSKQTNKVLI
Sbjct: 1  MPFKTVIEVEPPSLLRYLIGSAVMMIGVVLPVGYMMFRNKRVPFSSSYSKQTNKVLI 57

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255631680|gb|ACU16207.1| unknown [Glycine max]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 48/52 (92%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQT 52
          MP R +VEVEPPSPLRYL+GA +MMIGVVLPVGY MFRNKRVPS+SSYSKQT
Sbjct: 1  MPIRSLVEVEPPSPLRYLIGAAVMMIGVVLPVGYTMFRNKRVPSSSSYSKQT 52

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071109|ref|XP_002303359.1| predicted protein [Populus trichocarpa] gi|222840791|gb|EEE78338.1| predicted protein [Populus trichocarpa]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 49/52 (94%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQT 52
          MP+ +++EVEPPSPLRYL+GA +MMIGVVLPVGYMMFRNKR PS+SSYSKQT
Sbjct: 1  MPYWRVMEVEPPSPLRYLIGAALMMIGVVLPVGYMMFRNKRGPSSSSYSKQT 52

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238480764|ref|NP_001154243.1| uncharacterized protein [Arabidopsis thaliana] gi|332658387|gb|AEE83787.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 48/52 (92%)

Query: 1  MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQT 52
          MPF+ ++EVEPPS LRYL+G+ +MMIGVVLPVGYMMFRNKRVP +SSYSKQT
Sbjct: 1  MPFKTVIEVEPPSLLRYLIGSAVMMIGVVLPVGYMMFRNKRVPFSSSYSKQT 52

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
TAIR|locus:1005716316	57	AT4G16695 "AT4G16695" [Arabido	1.0	1.0	0.807	8e-21

TAIR|locus:1005716316 AT4G16695 "AT4G16695" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 46/57 (80%), Positives = 53/57 (92%)

Query:     1 MPFRKIVEVEPPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKVLI 57
             MPF+ ++EVEPPS LRYL+G+ +MMIGVVLPVGYMMFRNKRVP +SSYSKQTNKVLI
Sbjct:     1 MPFKTVIEVEPPSLLRYLIGSAVMMIGVVLPVGYMMFRNKRVPFSSSYSKQTNKVLI 57


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       57        57   0.00091  102 3  11 22  0.42    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  334 (36 KB)
  Total size of DFA:  56 KB (2058 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.81u 0.20s 7.01t   Elapsed:  00:00:00
  Total cpu time:  6.81u 0.20s 7.01t   Elapsed:  00:00:00
  Start:  Thu May  9 15:22:07 2013   End:  Thu May  9 15:22:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0007_2542 annotation not avaliable (57 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	57
PF13807	82	GNVR: G-rich domain on putative tyrosine kinase	83.17

>PF13807 GNVR: G-rich domain on putative tyrosine kinase

Probab=83.17  E-value=0.82  Score=26.46  Aligned_cols=29  Identities=34%  Similarity=0.657  Sum_probs=24.1

Q ss_pred             CCchHHHHHHHHHHHHHhhhheeeeehcc
Q 035414           11 PPSPLRYLMGAVIMMIGVVLPVGYMMFRN   39 (57)
Q Consensus        11 pP~p~rY~iGa~IMmvGVVLP~~YM~frn   39 (57)
                      |-+|-+-++=++-+++|.++++++.++|.
T Consensus        53 P~~P~~~lil~l~~~~Gl~lgi~~~~~re   81 (82)
T PF13807_consen   53 PVSPKRALILALGLFLGLILGIGLAFLRE   81 (82)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34777888878888999999999999874

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00