Citrus Sinensis ID: 035433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------5
Protein Sequence
MDAFSSYFESRNGEARWESLKNFHQISPVVQSHLKQLLPLERYSLFCII
Secondary Structure (PSIPRED)
ccHHHHHHccccccccHHHHHcHHHccHHHHHHHHHHHccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHccHHHHHHHHHHccHHHcEEEEEc
Coil and Loop (DISEMBL)
MDAFSSYFESRNGEARWESLKNFHQISPVVQShlkqllpleryslfcii
Flexible Loop (DISEMBL)
MDAFSSYFESRNGEARWESLKNFHQISPVVQShlkqllpleryslfcii
Low Complexity Region (SEG)
MDAFSSYFESRNGEARWESLKNFHQISPVVQSHLKQLLPLERYSLFCII
Disordered region (IsUnstruct)
****************WESLKNFHQISPVVQSHLKQLLPLERYSLFCI*
Disordered Region (DISOPRED)
***FSS**ESRNGEARWESLKNFHQISPVVQSHLKQLLPLERYSLFCII
Disordered Region (DISEMBL)
*************EARWESLKNFHQISPVVQSHLKQLLPLERYSLFCII
Disordered Region (DISPRO)
**************ARWESLKNFHQISPVVQSHLKQLLPLERYSLFCII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDAFSSYFESRNGEARWESLKNFHQISPVVQSHLKQLLPLERYSLFCII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	49	2.2.26 [Sep-21-2011]
Q9LD45	247	Bax inhibitor 1 OS=Arabid	yes	no	0.755	0.149	0.615	1e-06

>sp|Q9LD45|BI1_ARATH Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 31/39 (79%), Gaps = 2/39 (5%)

Query: 1  MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQL 37
          MDAFSS+F+S+ G   W  +SLKNF QISP VQ+HLK++
Sbjct: 1  MDAFSSFFDSQPGSRSWSYDSLKNFRQISPAVQNHLKRV 39

Suppressor of apoptosis.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	49
449461263	262	PREDICTED: bax inhibitor 1-like isoform	0.755	0.141	0.65	2e-05
449461265	250	PREDICTED: bax inhibitor 1-like isoform	0.755	0.148	0.65	2e-05
255638175	244	unknown [Glycine max]	0.693	0.139	0.666	3e-05
356541215	244	PREDICTED: bax inhibitor 1-like [Glycine	0.693	0.139	0.666	3e-05
297794511	247	ATBI-1 [Arabidopsis lyrata subsp. lyrata	0.755	0.149	0.615	4e-05
15238017	247	BAX inhibitor 1 [Arabidopsis thaliana] g	0.755	0.149	0.615	4e-05
21593125	247	Bax inhibitor-1 like [Arabidopsis thalia	0.755	0.149	0.615	5e-05
239949626	248	bax inhibitor 1 [Capsicum annuum]	0.755	0.149	0.575	0.0002
183447473	274	Bax inhibitor [Capsicum annuum]	0.755	0.135	0.575	0.0002
449461261	249	PREDICTED: bax inhibitor 1-like [Cucumis	0.755	0.148	0.6	0.0002

>gi|449461263|ref|XP_004148361.1| PREDICTED: bax inhibitor 1-like isoform 1 [Cucumis sativus] gi|449517832|ref|XP_004165948.1| PREDICTED: bax inhibitor 1-like isoform 1 [Cucumis sativus]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%), Gaps = 3/40 (7%)

Query: 1  MDAFSSYFESRNG-EARW--ESLKNFHQISPVVQSHLKQL 37
          MDAFSS+F+S++G   RW  ESLKNF QISP VQSHL+++
Sbjct: 1  MDAFSSFFDSQSGSRTRWSHESLKNFRQISPAVQSHLQRV 40

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461265|ref|XP_004148362.1| PREDICTED: bax inhibitor 1-like isoform 2 [Cucumis sativus] gi|449517834|ref|XP_004165949.1| PREDICTED: bax inhibitor 1-like isoform 2 [Cucumis sativus]

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%), Gaps = 3/40 (7%)

Query: 1  MDAFSSYFESRNG-EARW--ESLKNFHQISPVVQSHLKQL 37
          MDAFSS+F+S++G   RW  ESLKNF QISP VQSHL+++
Sbjct: 1  MDAFSSFFDSQSGSRTRWSHESLKNFRQISPAVQSHLQRV 40

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638175|gb|ACU19401.1| unknown [Glycine max]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 33/39 (84%), Gaps = 5/39 (12%)

Query: 1  MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQL 37
          MDAF+S+F+SRN   RW  ++LKNF QISPVVQ+HLKQ+
Sbjct: 1  MDAFNSFFDSRN---RWNYDTLKNFRQISPVVQNHLKQV 36

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541215|ref|XP_003539076.1| PREDICTED: bax inhibitor 1-like [Glycine max]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 33/39 (84%), Gaps = 5/39 (12%)

Query: 1  MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQL 37
          MDAF+S+F+SRN   RW  ++LKNF QISPVVQ+HLKQ+
Sbjct: 1  MDAFNSFFDSRN---RWNYDTLKNFRQISPVVQNHLKQV 36

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794511|ref|XP_002865140.1| ATBI-1 [Arabidopsis lyrata subsp. lyrata] gi|297310975|gb|EFH41399.1| ATBI-1 [Arabidopsis lyrata subsp. lyrata]

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 31/39 (79%), Gaps = 2/39 (5%)

Query: 1  MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQL 37
          MDAFSS+F+S+ G   W  +SLKNF QISP VQ+HLK++
Sbjct: 1  MDAFSSFFDSQPGSRSWSYDSLKNFRQISPAVQNHLKRV 39

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238017|ref|NP_199523.1| BAX inhibitor 1 [Arabidopsis thaliana] gi|12229684|sp|Q9LD45.1|BI1_ARATH RecName: Full=Bax inhibitor 1; Short=AtBI-1; Short=BI-1 gi|7209774|dbj|BAA89541.2| Bax inhibitor-1 [Arabidopsis thaliana] gi|8978079|dbj|BAA98107.1| Bax inhibitor-1 like [Arabidopsis thaliana] gi|11493975|gb|AAG35727.1| Bax inhibitor 1 [Arabidopsis thaliana] gi|20268760|gb|AAM14083.1| putative Bax inhibitor-1 [Arabidopsis thaliana] gi|21280947|gb|AAM45107.1| putative Bax inhibitor-1 [Arabidopsis thaliana] gi|332008090|gb|AED95473.1| BAX inhibitor 1 [Arabidopsis thaliana]

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 31/39 (79%), Gaps = 2/39 (5%)

Query: 1  MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQL 37
          MDAFSS+F+S+ G   W  +SLKNF QISP VQ+HLK++
Sbjct: 1  MDAFSSFFDSQPGSRSWSYDSLKNFRQISPAVQNHLKRV 39

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593125|gb|AAM65074.1| Bax inhibitor-1 like [Arabidopsis thaliana]

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 31/39 (79%), Gaps = 2/39 (5%)

Query: 1  MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQL 37
          MDAFSS+F+S+ G   W  +SLKNF QISP VQ+HLK++
Sbjct: 1  MDAFSSFFDSQPGSRSWSYDSLKNFRQISPAVQNHLKRV 39

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239949626|gb|ACS36610.1| bax inhibitor 1 [Capsicum annuum]

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 33/40 (82%), Gaps = 3/40 (7%)

Query: 1  MDAFSSYFESRNG-EARW--ESLKNFHQISPVVQSHLKQL 37
          M+ F+S+FES++   +RW  ++LKNFHQISP VQ+HLKQ+
Sbjct: 1  MEGFTSFFESQSASRSRWNYDALKNFHQISPRVQTHLKQV 40

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183447473|gb|ACC62519.1| Bax inhibitor [Capsicum annuum]

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 33/40 (82%), Gaps = 3/40 (7%)

Query: 1  MDAFSSYFESRNG-EARW--ESLKNFHQISPVVQSHLKQL 37
          M+ F+S+FES++   +RW  ++LKNFHQISP VQ+HLKQ+
Sbjct: 1  MEGFTSFFESQSASRSRWNYDALKNFHQISPRVQTHLKQV 40

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461261|ref|XP_004148360.1| PREDICTED: bax inhibitor 1-like [Cucumis sativus] gi|449526616|ref|XP_004170309.1| PREDICTED: bax inhibitor 1-like [Cucumis sativus]

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 3/40 (7%)

Query: 1  MDAFSSYFESRNGEAR---WESLKNFHQISPVVQSHLKQL 37
          MDAFSS+F+S+        ++SLKNF QISPVVQSHL Q+
Sbjct: 1  MDAFSSFFDSQQPSTNPWTYDSLKNFRQISPVVQSHLHQV 40

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	49
TAIR|locus:2151977	247	BI1 "BAX inhibitor 1" [Arabido	0.755	0.149	0.615	1.6e-07

TAIR|locus:2151977 BI1 "BAX inhibitor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query:     1 MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQL 37
             MDAFSS+F+S+ G   W  +SLKNF QISP VQ+HLK++
Sbjct:     1 MDAFSSFFDSQPGSRSWSYDSLKNFRQISPAVQNHLKRV 39


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       49        49   0.00091  102 3  11 22  0.47    26
                                                     29  0.38    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  499 (53 KB)
  Total size of DFA:  90 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.54u 0.22s 7.76t   Elapsed:  00:00:00
  Total cpu time:  7.54u 0.22s 7.76t   Elapsed:  00:00:00
  Start:  Thu May  9 16:07:38 2013   End:  Thu May  9 16:07:38 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA;IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006983 "ER overload response" evidence=IMP

GO:0000038 "very long-chain fatty acid metabolic process" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	49
KOG1629	235	consensus Bax-mediated apoptosis inhibitor TEGT/BI	98.86
PF07577	58	DUF1547: Domain of Unknown Function (DUF1547); Int	87.58
PRK10447	219	HflBKC-binding inner membrane protein; Provisional	85.91

>KOG1629 consensus Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]

Probab=98.86  E-value=1.1e-09  Score=76.06  Aligned_cols=27  Identities=41%  Similarity=0.597  Sum_probs=24.7

Q ss_pred             cchHHhhccCCCCHHHHHHHHhhhhcc
Q 035433           15 ARWESLKNFHQISPVVQSHLKQLLPLE   41 (49)
Q Consensus        15 ~~~~al~nf~~Isp~VQqHLKnVY~~~   41 (49)
                      .+|++|+||++|||.||+||||||++=
T Consensus         8 ~~fd~l~n~~~~sP~vq~HLkkvY~tl   34 (235)
T KOG1629|consen    8 WSFDALLNFSHISPAVQNHLKKVYLTL   34 (235)
T ss_pred             hhHHHHhccccCCHHHHHHHHHHHHHH
Confidence            567999999999999999999999863

>PF07577 DUF1547: Domain of Unknown Function (DUF1547); InterPro: IPR011443 This domain appears to be found only in a small family of Chlamydia species

Probab=87.58  E-value=0.24  Score=28.37  Aligned_cols=16  Identities=31%  Similarity=0.559  Sum_probs=13.6

Q ss_pred             CCHHHHHHHHhhhhcc
Q 035433           26 ISPVVQSHLKQLLPLE   41 (49)
Q Consensus        26 Isp~VQqHLKnVY~~~   41 (49)
                      |=|.||+||..||..+
T Consensus         2 iL~~vR~HLD~vy~~~   17 (58)
T PF07577_consen    2 ILPAVRAHLDVVYDQD   17 (58)
T ss_pred             HHHHHHHHhhceecCC
Confidence            4478999999999865

It is usually found repeated. The function of these proteins is not known.

>PRK10447 HflBKC-binding inner membrane protein; Provisional

Probab=85.91  E-value=0.42  Score=32.47  Aligned_cols=12  Identities=17%  Similarity=0.130  Sum_probs=10.9

Q ss_pred             HHHHHHHhhhhc
Q 035433           29 VVQSHLKQLLPL   40 (49)
Q Consensus        29 ~VQqHLKnVY~~   40 (49)
                      .+++||||||++
T Consensus        16 ~~~~~Lr~vY~l   27 (219)
T PRK10447         16 STHKVLRNTYFL   27 (219)
T ss_pred             HHhHHHHHHHHH
Confidence            589999999987

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	49
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 34.1 bits (77), Expect = 7e-04
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 11  RNGEARWESLK--NFHQISPVVQSHLKQLLPLERYSLF 46
           R+G A W++ K  N  +++ +++S L  L P E   +F
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00