Citrus Sinensis ID: 035443


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60-----
MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVTGKKQQ
cHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHcccccccccccccccccHHHHHHcccccccc
ccHHHHHEEEEEcccHHHHHHHHHHHHcHHHHHHcHHHccccccccccccccccEEEcccccccc
MAVMEKLRMFVAQEPVVAASCLMgafglflpavvrpmldsfesskqvpqpalsdvvagvtgkkqq
MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFesskqvpqpalsdvvagvtgkkqq
MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVTGKKQQ
*****************************************************************
*****KLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDS************SDVV**VT*****
MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDS*************************
MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVT*****
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
oooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVTGKKQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query65
2599254165 fiber protein Fb11 [Gossypium barbadense 0.984 0.984 0.843 9e-23
41873017965 fiber protein Fb11 [Solanum tuberosum] 1.0 1.0 0.846 1e-22
33031866264 fiber protein fb11 [Camellia sinensis] 0.984 1.0 0.796 1e-21
1840710365 uncharacterized protein [Arabidopsis tha 0.984 0.984 0.812 2e-21
29782838365 hypothetical protein ARALYDRAFT_483814 [ 0.984 0.984 0.796 3e-21
35650607763 PREDICTED: uncharacterized protein LOC10 0.969 1.0 0.793 4e-21
38851070063 unknown [Medicago truncatula] 0.969 1.0 0.793 4e-21
11546518365 Os05g0542100 [Oryza sativa Japonica Grou 1.0 1.0 0.738 8e-21
30713642063 fiber protein fb11 [Cucumis melo subsp. 0.969 1.0 0.777 2e-20
22547093265 PREDICTED: uncharacterized protein LOC10 0.984 0.984 0.765 3e-20
>gi|25992541|gb|AAN77150.1| fiber protein Fb11 [Gossypium barbadense] Back     alignment and taxonomy information
 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 59/64 (92%)

Query: 1  MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVT 60
          MAVM+KL++FV QEPVVAASCL+  FGLFLPAVVRP+LDS ESSKQVPQPAL DVVAGVT
Sbjct: 1  MAVMQKLKIFVVQEPVVAASCLIAGFGLFLPAVVRPILDSLESSKQVPQPALRDVVAGVT 60

Query: 61 GKKQ 64
          GKKQ
Sbjct: 61 GKKQ 64




Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418730179|gb|AFX66989.1| fiber protein Fb11 [Solanum tuberosum] Back     alignment and taxonomy information
>gi|330318662|gb|AEC10991.1| fiber protein fb11 [Camellia sinensis] Back     alignment and taxonomy information
>gi|18407103|ref|NP_566079.1| uncharacterized protein [Arabidopsis thaliana] gi|15215610|gb|AAK91350.1| F11C10.23/F11C10.23 [Arabidopsis thaliana] gi|20197774|gb|AAD20165.2| expressed protein [Arabidopsis thaliana] gi|20334882|gb|AAM16197.1| At2g46540/F11C10.23 [Arabidopsis thaliana] gi|21554416|gb|AAM63521.1| unknown [Arabidopsis thaliana] gi|330255624|gb|AEC10718.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828383|ref|XP_002882074.1| hypothetical protein ARALYDRAFT_483814 [Arabidopsis lyrata subsp. lyrata] gi|297327913|gb|EFH58333.1| hypothetical protein ARALYDRAFT_483814 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356506077|ref|XP_003521814.1| PREDICTED: uncharacterized protein LOC100785256 [Glycine max] gi|356573241|ref|XP_003554771.1| PREDICTED: uncharacterized protein LOC100795854 isoform 1 [Glycine max] gi|356573243|ref|XP_003554772.1| PREDICTED: uncharacterized protein LOC100795854 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|388510700|gb|AFK43416.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|115465183|ref|NP_001056191.1| Os05g0542100 [Oryza sativa Japonica Group] gi|55908883|gb|AAV67826.1| putative fiber protein [Oryza sativa Japonica Group] gi|113579742|dbj|BAF18105.1| Os05g0542100 [Oryza sativa Japonica Group] gi|215767984|dbj|BAH00213.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197194|gb|EEC79621.1| hypothetical protein OsI_20832 [Oryza sativa Indica Group] gi|222632415|gb|EEE64547.1| hypothetical protein OsJ_19399 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|307136420|gb|ADN34227.1| fiber protein fb11 [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|225470932|ref|XP_002265113.1| PREDICTED: uncharacterized protein LOC100257117 [Vitis vinifera] gi|297745487|emb|CBI40567.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query65
TAIR|locus:203999865 AT2G46540 "AT2G46540" [Arabido 0.984 0.984 0.812 2.6e-22
TAIR|locus:2039998 AT2G46540 "AT2G46540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 52/64 (81%), Positives = 57/64 (89%)

Query:     1 MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVT 60
             M VMEKLRMFVAQEPVVAASCL+G  GLFLPAVVRP+LDS E+SKQV  P L+DV+AGVT
Sbjct:     1 MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVT 60

Query:    61 GKKQ 64
             GKKQ
Sbjct:    61 GKKQ 64


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.133   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       65        65   0.00091  102 3  11 22  0.36    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  390 (42 KB)
  Total size of DFA:  63 KB (2059 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.83u 0.16s 6.99t   Elapsed:  00:00:01
  Total cpu time:  6.83u 0.16s 6.99t   Elapsed:  00:00:01
  Start:  Thu May  9 16:11:52 2013   End:  Thu May  9 16:11:53 2013


GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005739 "mitochondrion" evidence=IDA
GO:0016020 "membrane" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT2G46540
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, membrane; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 16 growth stages; Has 26 Blast hits to 26 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (65 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT3G29970
germination protein-related; germination protein-related; FUNCTIONS IN- molecular_function unkn [...] (87 aa)
       0.992
AT1G72040
deoxynucleoside kinase family; deoxynucleoside kinase family; FUNCTIONS IN- phosphotransferase [...] (580 aa)
       0.992
AT5G08050
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (158 aa)
       0.927
AT1G72170
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (102 aa)
      0.911
AT1G68680
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (75 aa)
      0.840
AT4G00585
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- photor [...] (88 aa)
       0.788
AT1G76200
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (69 aa)
       0.788
AT3G08610
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (65 aa)
       0.786
AT3G52730
ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein; ubiquinol-cytochrome C reducta [...] (72 aa)
       0.774
AT3G47833
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (93 aa)
       0.772

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 65
PF1498784 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex s 95.68
PF1506158 DUF4538: Domain of unknown function (DUF4538) 91.14
>PF14987 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex subunit 3 Back     alignment and domain information
Probab=95.68  E-value=0.0038  Score=41.03  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=27.0

Q ss_pred             HHHHHHHHHhhchhhhhhhhhhhhcchhhhh
Q 035443            3 VMEKLRMFVAQEPVVAASCLMGAFGLFLPAV   33 (65)
Q Consensus         3 vmeklr~fv~qEPVvaaSclI~G~GLfLpAv   33 (65)
                      +..-||..-.||||+++||.|+|+.+.||.+
T Consensus         5 ~~afLKnAWaKEPVlvvSf~ig~lavilP~l   35 (84)
T PF14987_consen    5 LGAFLKNAWAKEPVLVVSFVIGGLAVILPPL   35 (84)
T ss_pred             HHHHHHHhhhcCCeEEeeehhhhhhhhcCCc
Confidence            4556888899999999999999999888865



>PF15061 DUF4538: Domain of unknown function (DUF4538) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00