Citrus Sinensis ID: 035443
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 65 | ||||||
| 25992541 | 65 | fiber protein Fb11 [Gossypium barbadense | 0.984 | 0.984 | 0.843 | 9e-23 | |
| 418730179 | 65 | fiber protein Fb11 [Solanum tuberosum] | 1.0 | 1.0 | 0.846 | 1e-22 | |
| 330318662 | 64 | fiber protein fb11 [Camellia sinensis] | 0.984 | 1.0 | 0.796 | 1e-21 | |
| 18407103 | 65 | uncharacterized protein [Arabidopsis tha | 0.984 | 0.984 | 0.812 | 2e-21 | |
| 297828383 | 65 | hypothetical protein ARALYDRAFT_483814 [ | 0.984 | 0.984 | 0.796 | 3e-21 | |
| 356506077 | 63 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 1.0 | 0.793 | 4e-21 | |
| 388510700 | 63 | unknown [Medicago truncatula] | 0.969 | 1.0 | 0.793 | 4e-21 | |
| 115465183 | 65 | Os05g0542100 [Oryza sativa Japonica Grou | 1.0 | 1.0 | 0.738 | 8e-21 | |
| 307136420 | 63 | fiber protein fb11 [Cucumis melo subsp. | 0.969 | 1.0 | 0.777 | 2e-20 | |
| 225470932 | 65 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.984 | 0.765 | 3e-20 |
| >gi|25992541|gb|AAN77150.1| fiber protein Fb11 [Gossypium barbadense] | Back alignment and taxonomy information |
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Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 59/64 (92%)
Query: 1 MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVT 60
MAVM+KL++FV QEPVVAASCL+ FGLFLPAVVRP+LDS ESSKQVPQPAL DVVAGVT
Sbjct: 1 MAVMQKLKIFVVQEPVVAASCLIAGFGLFLPAVVRPILDSLESSKQVPQPALRDVVAGVT 60
Query: 61 GKKQ 64
GKKQ
Sbjct: 61 GKKQ 64
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Source: Gossypium barbadense Species: Gossypium barbadense Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|418730179|gb|AFX66989.1| fiber protein Fb11 [Solanum tuberosum] | Back alignment and taxonomy information |
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| >gi|330318662|gb|AEC10991.1| fiber protein fb11 [Camellia sinensis] | Back alignment and taxonomy information |
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| >gi|18407103|ref|NP_566079.1| uncharacterized protein [Arabidopsis thaliana] gi|15215610|gb|AAK91350.1| F11C10.23/F11C10.23 [Arabidopsis thaliana] gi|20197774|gb|AAD20165.2| expressed protein [Arabidopsis thaliana] gi|20334882|gb|AAM16197.1| At2g46540/F11C10.23 [Arabidopsis thaliana] gi|21554416|gb|AAM63521.1| unknown [Arabidopsis thaliana] gi|330255624|gb|AEC10718.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297828383|ref|XP_002882074.1| hypothetical protein ARALYDRAFT_483814 [Arabidopsis lyrata subsp. lyrata] gi|297327913|gb|EFH58333.1| hypothetical protein ARALYDRAFT_483814 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356506077|ref|XP_003521814.1| PREDICTED: uncharacterized protein LOC100785256 [Glycine max] gi|356573241|ref|XP_003554771.1| PREDICTED: uncharacterized protein LOC100795854 isoform 1 [Glycine max] gi|356573243|ref|XP_003554772.1| PREDICTED: uncharacterized protein LOC100795854 isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|388510700|gb|AFK43416.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|115465183|ref|NP_001056191.1| Os05g0542100 [Oryza sativa Japonica Group] gi|55908883|gb|AAV67826.1| putative fiber protein [Oryza sativa Japonica Group] gi|113579742|dbj|BAF18105.1| Os05g0542100 [Oryza sativa Japonica Group] gi|215767984|dbj|BAH00213.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197194|gb|EEC79621.1| hypothetical protein OsI_20832 [Oryza sativa Indica Group] gi|222632415|gb|EEE64547.1| hypothetical protein OsJ_19399 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|307136420|gb|ADN34227.1| fiber protein fb11 [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
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| >gi|225470932|ref|XP_002265113.1| PREDICTED: uncharacterized protein LOC100257117 [Vitis vinifera] gi|297745487|emb|CBI40567.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 65 | ||||||
| TAIR|locus:2039998 | 65 | AT2G46540 "AT2G46540" [Arabido | 0.984 | 0.984 | 0.812 | 2.6e-22 |
| TAIR|locus:2039998 AT2G46540 "AT2G46540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 52/64 (81%), Positives = 57/64 (89%)
Query: 1 MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVT 60
M VMEKLRMFVAQEPVVAASCL+G GLFLPAVVRP+LDS E+SKQV P L+DV+AGVT
Sbjct: 1 MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVT 60
Query: 61 GKKQ 64
GKKQ
Sbjct: 61 GKKQ 64
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.133 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 65 65 0.00091 102 3 11 22 0.36 28
29 0.46 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 390 (42 KB)
Total size of DFA: 63 KB (2059 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 6.83u 0.16s 6.99t Elapsed: 00:00:01
Total cpu time: 6.83u 0.16s 6.99t Elapsed: 00:00:01
Start: Thu May 9 16:11:52 2013 End: Thu May 9 16:11:53 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| AT2G46540 | unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, membrane; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 16 growth stages; Has 26 Blast hits to 26 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (65 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
| AT3G29970 | • | 0.992 | |||||||||
| AT1G72040 | • | 0.992 | |||||||||
| AT5G08050 | • | 0.927 | |||||||||
| AT1G72170 | • | • | 0.911 | ||||||||
| AT1G68680 | • | • | 0.840 | ||||||||
| AT4G00585 | • | 0.788 | |||||||||
| AT1G76200 | • | 0.788 | |||||||||
| AT3G08610 | • | 0.786 | |||||||||
| AT3G52730 | • | 0.774 | |||||||||
| AT3G47833 | • | 0.772 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 65 | |||
| PF14987 | 84 | NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex s | 95.68 | |
| PF15061 | 58 | DUF4538: Domain of unknown function (DUF4538) | 91.14 |
| >PF14987 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex subunit 3 | Back alignment and domain information |
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Probab=95.68 E-value=0.0038 Score=41.03 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhcchhhhh
Q 035443 3 VMEKLRMFVAQEPVVAASCLMGAFGLFLPAV 33 (65)
Q Consensus 3 vmeklr~fv~qEPVvaaSclI~G~GLfLpAv 33 (65)
+..-||..-.||||+++||.|+|+.+.||.+
T Consensus 5 ~~afLKnAWaKEPVlvvSf~ig~lavilP~l 35 (84)
T PF14987_consen 5 LGAFLKNAWAKEPVLVVSFVIGGLAVILPPL 35 (84)
T ss_pred HHHHHHHhhhcCCeEEeeehhhhhhhhcCCc
Confidence 4556888899999999999999999888865
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| >PF15061 DUF4538: Domain of unknown function (DUF4538) | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00