Citrus Sinensis ID: 035486

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
cHHHHHHHHHHccEEEEEccccccHHHHHHHHHHHHccccEEEEEEEEEccHHHHHccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccEEEcccccccccccccHHHHHHcccHHHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccccccEEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHHHccccc
cHHHHHHHHHcccEEEcHHHcccccccHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHcccccccccccEccccccccccccccHHHHHHHcccHHHHHHHHHHHHHccEEEEEEEEEEccccEEEEEEEEEEcccHHHcccccEEEEEEEEccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHccccc
YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKeagytepdprddlsgtdVARKVIILARESGlklelsdlpvrslvpeplkACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRrykkdhpfaqlsgsdnIIAFTTkrykeqplivrgpgagaqvtaggIFSDILRLASYLGAPS
YLKLRSLQRKSYTHYfyeatvgagLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKeagytepdprddlsgtDVARKVIILAResglklelsdlpvrslVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEdagevlryvgvvdaiNKEGRVELRrykkdhpfaqlsgsdniIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
*********KSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVA*******************DVARKVIILARESGLKLELSDLPVRSLV***********************************EVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL****
YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLG***
YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEEL*********AGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLG***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASxxxxxxxxxxxxxxxxxxxxxAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query234 2.2.26 [Sep-21-2011]
Q9SA18911 Bifunctional aspartokinas yes no 1.0 0.256 0.888 1e-121
O81852916 Bifunctional aspartokinas no no 1.0 0.255 0.858 1e-117
P49080917 Bifunctional aspartokinas N/A no 1.0 0.255 0.824 1e-116
P49079920 Bifunctional aspartokinas N/A no 1.0 0.254 0.829 1e-114
P37142921 Bifunctional aspartokinas N/A no 1.0 0.254 0.803 1e-110
O94671376 Probable homoserine dehyd yes no 0.867 0.539 0.559 3e-62
Q5B998368 Homoserine dehydrogenase yes no 0.901 0.573 0.542 1e-61
P00562810 Bifunctional aspartokinas N/A no 0.974 0.281 0.473 5e-54
P31116359 Homoserine dehydrogenase yes no 0.914 0.596 0.509 1e-53
P27725819 Bifunctional aspartokinas N/A no 0.961 0.274 0.441 3e-52
>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1 Back     alignment and function desciption
 Score =  433 bits (1113), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/234 (88%), Positives = 225/234 (96%)

Query: 1   YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV 60
           YLK+R LQRKSYTHYFYEATVGAGLPIISTLRGLLETGD ILRIEGIFSGTLSYLFN+FV
Sbjct: 678 YLKIRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYLFNNFV 737

Query: 61  GTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEP 120
           GTRSFSEVVAEAK+AG+TEPDPRDDLSGTDVARKV ILARESGLKL+L  LPV++LVP+P
Sbjct: 738 GTRSFSEVVAEAKQAGFTEPDPRDDLSGTDVARKVTILARESGLKLDLEGLPVQNLVPKP 797

Query: 121 LKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHP 180
           L+ACASAEEFM++LPQFDEEL+KQR+EAE AGEVLRYVGVVDA+ K+G VEL+RYKKDHP
Sbjct: 798 LQACASAEEFMEKLPQFDEELSKQREEAEAAGEVLRYVGVVDAVEKKGTVELKRYKKDHP 857

Query: 181 FAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 234
           FAQLSG+DNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLA YLGAPS
Sbjct: 858 FAQLSGADNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLAFYLGAPS 911

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3
>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1 Back     alignment and function description
>sp|P49080|AKH2_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1 Back     alignment and function description
>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1 Back     alignment and function description
>sp|P37142|AKH_DAUCA Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1 Back     alignment and function description
>sp|O94671|DHOM_SCHPO Probable homoserine dehydrogenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.03 PE=1 SV=1 Back     alignment and function description
>sp|Q5B998|DHOM_EMENI Homoserine dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN2882 PE=1 SV=1 Back     alignment and function description
>sp|P00562|AK2H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 2 OS=Escherichia coli (strain K12) GN=metL PE=1 SV=3 Back     alignment and function description
>sp|P31116|DHOM_YEAST Homoserine dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOM6 PE=1 SV=1 Back     alignment and function description
>sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
224145045 829 predicted protein [Populus trichocarpa] 1.0 0.282 0.884 1e-120
15221653 911 bifunctional aspartokinase/homoserine de 1.0 0.256 0.888 1e-119
26452575 911 putative aspartate kinase-homoserine deh 1.0 0.256 0.884 1e-119
297846486 911 AK-HSDH I [Arabidopsis lyrata subsp. lyr 1.0 0.256 0.884 1e-119
297740938 871 unnamed protein product [Vitis vinifera] 1.0 0.268 0.880 1e-118
225460063 918 PREDICTED: bifunctional aspartokinase/ho 1.0 0.254 0.880 1e-118
255569084 920 aspartate kinase, putative [Ricinus comm 1.0 0.254 0.876 1e-118
147856217 841 hypothetical protein VITISV_034964 [Viti 1.0 0.278 0.880 1e-118
357157887 918 PREDICTED: bifunctional aspartokinase/ho 1.0 0.254 0.858 1e-118
224136137 843 predicted protein [Populus trichocarpa] 1.0 0.277 0.876 1e-117
>gi|224145045|ref|XP_002325506.1| predicted protein [Populus trichocarpa] gi|222862381|gb|EEE99887.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/234 (88%), Positives = 229/234 (97%)

Query: 1   YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV 60
           Y KLR+LQR+SYTHYFYEATVGAGLPIISTLRGLLETGD ILRIEGIFSGTLSY+FN+F+
Sbjct: 596 YSKLRALQRQSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFI 655

Query: 61  GTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEP 120
           GTR+FS+VVAEAK+AGYTEPDPRDDLSGTDVARKVIILARESGLKLELSD+PV+SLVP+P
Sbjct: 656 GTRAFSDVVAEAKQAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVQSLVPQP 715

Query: 121 LKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHP 180
           L+A AS EE+M++LPQFD E+A++RQEAEDAG+VLRYVGVVDA+++EGRVELRRYKKDHP
Sbjct: 716 LRASASVEEYMQRLPQFDSEMARERQEAEDAGDVLRYVGVVDAVSEEGRVELRRYKKDHP 775

Query: 181 FAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 234
           FAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Sbjct: 776 FAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 829

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15221653|ref|NP_174408.1| bifunctional aspartokinase/homoserine dehydrogenase 1 [Arabidopsis thaliana] gi|75200025|sp|Q9SA18.1|AKH1_ARATH RecName: Full=Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; Short=AK-HD 1; Short=AK-HSDH 1; AltName: Full=Beta-aspartyl phosphate homoserine 1; Includes: RecName: Full=Aspartokinase; Includes: RecName: Full=Homoserine dehydrogenase; Flags: Precursor gi|4512620|gb|AAD21689.1| Identical to gb|X71364 gene for aspartate kinase homoserine dehydrogenase from Arabidopsis thaliana [Arabidopsis thaliana] gi|332193209|gb|AEE31330.1| bifunctional aspartokinase/homoserine dehydrogenase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26452575|dbj|BAC43372.1| putative aspartate kinase-homoserine dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297846486|ref|XP_002891124.1| AK-HSDH I [Arabidopsis lyrata subsp. lyrata] gi|297336966|gb|EFH67383.1| AK-HSDH I [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297740938|emb|CBI31250.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225460063|ref|XP_002271525.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255569084|ref|XP_002525511.1| aspartate kinase, putative [Ricinus communis] gi|223535190|gb|EEF36869.1| aspartate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147856217|emb|CAN82421.1| hypothetical protein VITISV_034964 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357157887|ref|XP_003577947.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|224136137|ref|XP_002327390.1| predicted protein [Populus trichocarpa] gi|222835760|gb|EEE74195.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
TAIR|locus:2029564911 AK-HSDH I "aspartate kinase-ho 1.0 0.256 0.888 8.1e-108
TAIR|locus:2133995916 AK-HSDH II "aspartate kinase-h 1.0 0.255 0.858 1.2e-104
POMBASE|SPBC776.03376 SPBC776.03 "homoserine dehydro 0.991 0.617 0.546 5.4e-63
UNIPROTKB|G4NCU5370 MGG_11450 "Homoserine dehydrog 0.901 0.570 0.523 2.5e-58
ASPGD|ASPL0000040676368 AN2882 [Emericella nidulans (t 0.918 0.584 0.542 9.6e-57
SGD|S000003900359 HOM6 "Homoserine dehydrogenase 0.914 0.596 0.509 3.3e-56
CGD|CAL0006049359 HOM6 [Candida albicans (taxid: 0.901 0.587 0.534 6.1e-55
UNIPROTKB|P00562810 metL "MetL" [Escherichia coli 0.974 0.281 0.473 2.4e-49
UNIPROTKB|Q9KNP7803 VC_2684 "Aspartokinase II/homo 0.974 0.283 0.473 6.1e-49
TIGR_CMR|VC_2684803 VC_2684 "aspartokinase II/homo 0.974 0.283 0.473 6.1e-49
TAIR|locus:2029564 AK-HSDH I "aspartate kinase-homoserine dehydrogenase i" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
 Identities = 208/234 (88%), Positives = 225/234 (96%)

Query:     1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV 60
             YLK+R LQRKSYTHYFYEATVGAGLPIISTLRGLLETGD ILRIEGIFSGTLSYLFN+FV
Sbjct:   678 YLKIRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYLFNNFV 737

Query:    61 GTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEP 120
             GTRSFSEVVAEAK+AG+TEPDPRDDLSGTDVARKV ILARESGLKL+L  LPV++LVP+P
Sbjct:   738 GTRSFSEVVAEAKQAGFTEPDPRDDLSGTDVARKVTILARESGLKLDLEGLPVQNLVPKP 797

Query:   121 LKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHP 180
             L+ACASAEEFM++LPQFDEEL+KQR+EAE AGEVLRYVGVVDA+ K+G VEL+RYKKDHP
Sbjct:   798 LQACASAEEFMEKLPQFDEELSKQREEAEAAGEVLRYVGVVDAVEKKGTVELKRYKKDHP 857

Query:   181 FAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 234
             FAQLSG+DNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLA YLGAPS
Sbjct:   858 FAQLSGADNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLAFYLGAPS 911
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004072 "aspartate kinase activity" evidence=IEA;IDA
GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA
GO:0006520 "cellular amino acid metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016597 "amino acid binding" evidence=IEA
GO:0050661 "NADP binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2133995 AK-HSDH II "aspartate kinase-homoserine dehydrogenase ii" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC776.03 SPBC776.03 "homoserine dehydrogenase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4NCU5 MGG_11450 "Homoserine dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040676 AN2882 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000003900 HOM6 "Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0006049 HOM6 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|P00562 metL "MetL" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNP7 VC_2684 "Aspartokinase II/homoserine dehydrogenase, methionine-sensitive" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2684 VC_2684 "aspartokinase II/homoserine dehydrogenase, methionine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SA18AKH1_ARATH1, ., 1, ., 1, ., 30.88881.00.2568yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.766
3rd Layer1.1.1.30.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XIX000654
hypothetical protein (829 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_scaffold_66000196
homoserine kinase (EC-2.7.1.39) (366 aa)
• •• •• 0.987
eugene3.37950001
aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (344 aa)
     •• 0.923
grail3.0035005702
dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa)
     •• 0.922
eugene3.00081272
aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (375 aa)
     •• 0.921
eugene3.00100987
aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (375 aa)
     •• 0.921
estExt_fgenesh4_pg.C_LG_II1351
dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa)
     •• 0.921
estExt_fgenesh4_pg.C_LG_XVI0748
adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)
   • •  0.816
estExt_fgenesh4_pm.C_LG_XVIII0241
SubName- Full=Putative uncharacterized protein; (407 aa)
     •  0.810
estExt_fgenesh4_pg.C_LG_VI1672
aspartate transaminase (EC-2.6.1.1) (449 aa)
     •  0.807
gw1.XIV.3012.1
aspartate transaminase (EC-2.6.1.1) (403 aa)
     •  0.806

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
PRK09436819 PRK09436, thrA, bifunctional aspartokinase I/homos 1e-120
PRK09466810 PRK09466, metL, bifunctional aspartate kinase II/h 3e-80
COG0460333 COG0460, ThrA, Homoserine dehydrogenase [Amino aci 1e-74
pfam00742178 pfam00742, Homoserine_dh, Homoserine dehydrogenase 2e-69
PLN02700377 PLN02700, PLN02700, homoserine dehydrogenase famil 4e-64
PRK06270341 PRK06270, PRK06270, homoserine dehydrogenase; Prov 1e-29
PRK08374336 PRK08374, PRK08374, homoserine dehydrogenase; Prov 8e-24
PRK06349 426 PRK06349, PRK06349, homoserine dehydrogenase; Prov 3e-20
PRK06392326 PRK06392, PRK06392, homoserine dehydrogenase; Prov 4e-14
PRK06813346 PRK06813, PRK06813, homoserine dehydrogenase; Vali 1e-10
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional Back     alignment and domain information 
 Score =  359 bits (924), Expect = e-120
 Identities = 113/232 (48%), Positives = 154/232 (66%), Gaps = 2/232 (0%)

Query: 1   YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV 60
           Y +LR   RKS   + YE  VGAGLP+I TL+ LL  GD +L+ EGI SG+LS++F    
Sbjct: 589 YHQLREAARKSRRKFLYETNVGAGLPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLD 648

Query: 61  GTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEP 120
              SFSE    AKE GYTEPDPRDDLSG DVARK++ILARE+G +LEL D+ V S++PE 
Sbjct: 649 EGMSFSEATRLAKEKGYTEPDPRDDLSGMDVARKLLILAREAGYELELEDIEVESVLPEE 708

Query: 121 LKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHP 180
             A  S +EFM +LP+ D E A +  +A   G+VLRYVG ++  + + RV +     +HP
Sbjct: 709 FDASGSVDEFMARLPELDAEFAARVAKARAEGKVLRYVGQIE--DGKCRVGIAEVDANHP 766

Query: 181 FAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA 232
             ++ G +N +AF T+ Y+  PL++RG GAG +VTA G+F+D+LR  S+   
Sbjct: 767 LYKVKGGENALAFYTRYYQPIPLVLRGYGAGNEVTAAGVFADLLRTLSWKLG 818

Length = 819
>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional Back     alignment and domain information
>gnl|CDD|223536 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216092 pfam00742, Homoserine_dh, Homoserine dehydrogenase Back     alignment and domain information
>gnl|CDD|215377 PLN02700, PLN02700, homoserine dehydrogenase family protein Back     alignment and domain information
>gnl|CDD|235763 PRK06270, PRK06270, homoserine dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|169409 PRK08374, PRK08374, homoserine dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|235783 PRK06349, PRK06349, homoserine dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|102354 PRK06392, PRK06392, homoserine dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|168683 PRK06813, PRK06813, homoserine dehydrogenase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
PLN02700377 homoserine dehydrogenase family protein 100.0
COG0460333 ThrA Homoserine dehydrogenase [Amino acid transpor 100.0
PRK09466810 metL bifunctional aspartate kinase II/homoserine d 100.0
PRK09436819 thrA bifunctional aspartokinase I/homoserine dehyd 100.0
PRK06813346 homoserine dehydrogenase; Validated 100.0
PRK08374336 homoserine dehydrogenase; Provisional 100.0
PRK06349 426 homoserine dehydrogenase; Provisional 100.0
PRK06270341 homoserine dehydrogenase; Provisional 100.0
PRK06392326 homoserine dehydrogenase; Provisional 100.0
PF00742179 Homoserine_dh: Homoserine dehydrogenase; InterPro: 100.0
KOG0455364 consensus Homoserine dehydrogenase [Amino acid tra 100.0
>PLN02700 homoserine dehydrogenase family protein Back     alignment and domain information 
Probab=100.00  E-value=3.7e-70  Score=505.78  Aligned_cols=226  Identities=42%  Similarity=0.694  Sum_probs=214.5

Q ss_pred             ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486            1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP   80 (234)
Q Consensus         1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~   80 (234)
                      |+++.++++ +|++|+||||||||+|||++|++++.+||+|++|+||||||+||||++|++|.+|+|||++||++|||||
T Consensus       148 ~~~~~~la~-~~~~~~yEatVgaGlPiI~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~g~~fseal~eAq~~GyaEp  226 (377)
T PLN02700        148 LEDYDKLAA-HPRRIRHESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSELEDGKPFSEVVKQAKSLGYTEP  226 (377)
T ss_pred             HHHHHHHHH-cCCeEEEEeeeeeccchHHHHHHHhhccCCEEEEEEEEeChHHHHHHHHhcCCCHHHHHHHHHHcCCCCC
Confidence            467888885 7999999999999999999999998789999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCChhhhHHHHHHHHHhCCCCCCCCeeeccCCCccccCC-CCHHHHHh-cCCcchHHHHHHHHHHHHcCCcEEEE
Q 035486           81 DPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKAC-ASAEEFMK-QLPQFDEELAKQRQEAEDAGEVLRYV  158 (234)
Q Consensus        81 DP~~Dv~G~Daa~Kl~ILa~~~g~~i~~~dv~~~~~~p~gi~~i-~~~~~~~~-~l~~~d~~~~~~i~~A~~~G~~lk~v  158 (234)
                      ||++||+|+|+|+|++||||++|.+++++||+++|++|+.+... .+.++|++ .|+.+|+.|+++++.|+++|+++|||
T Consensus       227 DP~~Dl~G~D~ArKl~ILAr~~G~~~~~~dv~v~~l~p~~~~~~~~s~~~f~~~gi~~~d~~~~~~~~~A~~~g~~lR~V  306 (377)
T PLN02700        227 DPRDDLGGMDVARKALILARLLGKRINMDSIKVESLYPEEMGPDLMSTDDFLHSGLVELDLPIEERVKEASLKGCVLRYV  306 (377)
T ss_pred             CCccccccHhHHHHHHHHHHHhCCCCChhhEEEEecccccccccccchhhHhhcCCccCChHHHHHHHHHHHCCCEEEEE
Confidence            99999999999999999999999999999999999999988632 24789999 89999999999999999999999999


Q ss_pred             EEEEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHh
Q 035486          159 GVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY  229 (234)
Q Consensus       159 ~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~  229 (234)
                      |+++  +.+++|+|+.+|++|||++++|++|+|.|+|++|+.+|++++|||||+.+||+|||+||+++++.
T Consensus       307 a~~~--~~~~~V~~~~vp~~hpla~v~g~~N~v~~~t~~~~~~plvv~G~GAG~~~TA~~vl~Dll~i~~~  375 (377)
T PLN02700        307 CVIE--GSSCQVGIRELPKDSALGRLRGSDNVVEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDLQDL  375 (377)
T ss_pred             EEEE--CCeEEEEEEEECCCCccccCCCCceEEEEEecccCCcceEEEcCCCChhHhHHHHHHHHHHHHHh
Confidence            9997  46799999999999999999999999999999998789999999999999999999999999973

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional Back     alignment and domain information
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional Back     alignment and domain information
>PRK06813 homoserine dehydrogenase; Validated Back     alignment and domain information
>PRK08374 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK06349 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK06270 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK06392 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PF00742 Homoserine_dh: Homoserine dehydrogenase; InterPro: IPR001342 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway Back     alignment and domain information
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
1q7g_A359 Homoserine Dehydrogenase In Complex With Suicide In 1e-54
1ebf_A358 Homoserine Dehydrogenase From S. Cerevisiae Complex 1e-54
3do5_A327 Crystal Structure Of Putative Homoserine Dehydrogen 7e-14
2ejw_A332 Homoserine Dehydrogenase From Thermus Thermophilus 6e-12
3ing_A325 Crystal Structure Of Homoserine Dehydrogenase (Np_3 2e-10
3mtj_A 444 The Crystal Structure Of A Homoserine Dehydrogenase 7e-10
3c8m_A331 Crystal Structure Of Homoserine Dehydrogenase From 4e-09
3jsa_A328 Homoserine Dehydrogenase From Thermoplasma Volcaniu 5e-09
>pdb|1Q7G|A Chain A, Homoserine Dehydrogenase In Complex With Suicide Inhibitor Complex Nad-5-Hydroxy-4-Oxonorvaline Length = 359 Back     alignment and structure 
Iteration: 1

 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/220 (50%), Positives = 162/220 (73%), Gaps = 6/220 (2%)
Query: 16  FYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRS----FSEVVAE 71
           ++EATVGAGLPIIS LR +++TGD + +IEGIFSGTLSY+FN F  +++    FS+VV  
Sbjct: 141 YHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKV 200
Query: 72  AKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLEL-SDLPVRSLVPEPLKACASAEEF 130
           AK+ GYTEPDPRDDL+G DVARKV I+ R SG+++E  +  PV+SL+P+PL++  SA+EF
Sbjct: 201 AKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEF 260
Query: 131 MKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNI 190
           +++L  +D++L + ++EA    +VLR++G VD   K   V + +Y   HPFA L GSDN+
Sbjct: 261 LEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNV 320
Query: 191 IAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230
           I+  TKRY   P++++G GAGA VTA G+  D++++A  L
Sbjct: 321 ISIKTKRY-TNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL 359
>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With Nad+ Length = 358 Back     alignment and structure
>pdb|3DO5|A Chain A, Crystal Structure Of Putative Homoserine Dehydrogenase (Np_069768.1) From Archaeoglobus Fulgidus At 2.20 A Resolution Length = 327 Back     alignment and structure
>pdb|2EJW|A Chain A, Homoserine Dehydrogenase From Thermus Thermophilus Hb8 Length = 332 Back     alignment and structure
>pdb|3ING|A Chain A, Crystal Structure Of Homoserine Dehydrogenase (Np_394635.1) From Thermoplasma Acidophilum At 1.95 A Resolution Length = 325 Back     alignment and structure
>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From Thiobacillus Denitrificans To 2.15a Length = 444 Back     alignment and structure
>pdb|3C8M|A Chain A, Crystal Structure Of Homoserine Dehydrogenase From Thermoplasma Volcanium Length = 331 Back     alignment and structure
>pdb|3JSA|A Chain A, Homoserine Dehydrogenase From Thermoplasma Volcanium Complexed With Nad Length = 328 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
1ebf_A358 Homoserine dehydrogenase; dinucleotide, NAD, dimer 1e-117
3c8m_A331 Homoserine dehydrogenase; structural genomics, APC 3e-30
3ing_A325 Homoserine dehydrogenase; NP_394635.1, structural 2e-28
2ejw_A332 HDH, homoserine dehydrogenase; NAD-dependent, oxid 3e-27
3mtj_A 444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 7e-26
3do5_A327 HOM, homoserine dehydrogenase; NP_069768.1, putati 3e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* Length = 358 Back     alignment and structure
 Score =  338 bits (870), Expect = e-117
 Identities = 114/235 (48%), Positives = 166/235 (70%), Gaps = 7/235 (2%)

Query: 1   YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV 60
           +  L S  + +    ++EATVGAGLPIIS LR +++TGD + +IEGIFSGTLSY+FN F 
Sbjct: 126 WKALFS-NKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFS 184

Query: 61  GTR----SFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLEL-SDLPVRS 115
            ++     FS+VV  AK+ GYTEPDPRDDL+G DVARKV I+ R SG+++E  +  PV+S
Sbjct: 185 TSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQS 244

Query: 116 LVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRY 175
           L+P+PL++  SA+EF+++L  +D++L + ++EA    +VLR++G VD   K   V + +Y
Sbjct: 245 LIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKY 304

Query: 176 KKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230
              HPFA L GSDN+I+  TKRY   P++++G GAGA VTA G+  D++++A  L
Sbjct: 305 DYSHPFASLKGSDNVISIKTKRYT-NPVVIQGAGAGAAVTAAGVLGDVIKIAQRL 358
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* Length = 331 Back     alignment and structure
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Length = 325 Back     alignment and structure
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} Length = 332 Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Length = 444 Back     alignment and structure
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} Length = 327 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
1ebf_A358 Homoserine dehydrogenase; dinucleotide, NAD, dimer 100.0
3do5_A327 HOM, homoserine dehydrogenase; NP_069768.1, putati 100.0
3ing_A325 Homoserine dehydrogenase; NP_394635.1, structural 100.0
3mtj_A 444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 100.0
3c8m_A331 Homoserine dehydrogenase; structural genomics, APC 100.0
2ejw_A332 HDH, homoserine dehydrogenase; NAD-dependent, oxid 100.0
1r0k_A388 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N 92.03
3upl_A446 Oxidoreductase; rossmann fold, NADPH binding; 1.50 89.25
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-69  Score=493.75  Aligned_cols=228  Identities=50%  Similarity=0.868  Sum_probs=219.0

Q ss_pred             ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhcc----CCCCCHHHHHHHHHHcC
Q 035486            1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSF----VGTRSFSEVVAEAKEAG   76 (234)
Q Consensus         1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m----~~g~~f~eal~eAq~lG   76 (234)
                      |+||. +|+++|+.|+||++|++|+|+|+++++++.+|++|.+|+||+|||+||||++|    ++|.+|+++|++||++|
T Consensus       126 ~~eL~-~A~~~gv~~~~Ea~vg~giPii~~l~~~l~~G~~I~~I~GIlnGT~nyil~~m~~~~~~g~~f~~~l~eAq~~G  204 (358)
T 1ebf_A          126 WKALF-SNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLG  204 (358)
T ss_dssp             HHHHT-CCCTTCCCEECGGGTTTTSSCHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHT
T ss_pred             HHHHH-HHHHcCCEEEEccccccCCcHHHHHHHHHHcCCCeEEEEEEEeecceeeecccccccccCCCHHHHHHHHHHcC
Confidence            47899 99999999999999999999999999999779999999999999999999999    77999999999999999


Q ss_pred             CCCCCcCCCCCChhhhHHHHHHHHHhCCCCCCCC-eeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcE
Q 035486           77 YTEPDPRDDLSGTDVARKVIILARESGLKLELSD-LPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVL  155 (234)
Q Consensus        77 yaE~DP~~Dv~G~Daa~Kl~ILa~~~g~~i~~~d-v~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~l  155 (234)
                      |||+||++||+|+|+|+|++||||++|.+++++| |++++++|+++++..+.++|+++|+.+|..|+++++.|+++|+++
T Consensus       205 yaE~DP~~Dv~G~D~a~Kl~ILa~~~g~~~~~~d~v~~egi~p~~~~~~~~~~~f~~~l~~~d~~~~~~~~~A~~~g~~i  284 (358)
T 1ebf_A          205 YTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVL  284 (358)
T ss_dssp             CSCSSTHHHHTCHHHHHHHHHHHHHTTCCCCCTTSSCBCCCSCGGGSTTSCTHHHHHHHGGGHHHHHHHHHHHTTTTEEE
T ss_pred             CCCCCcccCCCChhHHHHHHHHHHhcCCCCCCCCeeEEeccccccccccccHHHHHhcCcccchhhHHHHHHHHHCCCEE
Confidence            9999999999999999999999997799999999 999999999999998899999999999999999999999999999


Q ss_pred             EEEEEEEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhc
Q 035486          156 RYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL  230 (234)
Q Consensus       156 k~v~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~  230 (234)
                      ||||.++..+++++|+|+.||++|||++|+|++|+|.|+|++| ++|++|+|||||+.+||+||++||+++++++
T Consensus       285 klv~~~~~~~~~~~v~~~~v~~~~pla~v~g~~N~v~~~~~~~-~~~~~~~G~GAG~~~TA~av~~Dii~i~~~~  358 (358)
T 1ebf_A          285 RFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRY-TNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL  358 (358)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSSGGGGCCTTCEEEEEEESSC-SSCEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEeCCCeEEEEEEEECCCCccccCCCCCEEEEEecccc-CccEEEEecCCChHHHHHHHHHHHHHHHhcC
Confidence            9999998644479999999999999999999999999999999 5599999999999999999999999999864
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Back     alignment and structure
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* Back     alignment and structure
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} Back     alignment and structure
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* Back     alignment and structure
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 234
d1ebfa2190 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Bak 2e-52
d1ebfa1168 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogena 1e-08
>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 190 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Homoserine dehydrogenase-like
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  165 bits (419), Expect = 2e-52
 Identities = 96/191 (50%), Positives = 139/191 (72%), Gaps = 6/191 (3%)

Query: 26  PIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRS----FSEVVAEAKEAGYTEPD 81
           PIIS LR +++TGD + +IEGIFSGTLSY+FN F  +++    FS+VV  AK+ GYTEPD
Sbjct: 1   PIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPD 60

Query: 82  PRDDLSGTDVARKVIILARESGLKLE-LSDLPVRSLVPEPLKACASAEEFMKQLPQFDEE 140
           PRDDL+G DVARKV I+ R SG+++E  +  PV+SL+P+PL++  SA+EF+++L  +D++
Sbjct: 61  PRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKD 120

Query: 141 LAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKE 200
           L + ++EA    +VLR++G VD   K   V + +Y   HPFA L GSDN+I+  TKRY  
Sbjct: 121 LTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRYT- 179

Query: 201 QPLIVRGPGAG 211
            P++++G GAG
Sbjct: 180 NPVVIQGAGAG 190
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
d1ebfa2190 Homoserine dehydrogenase {Baker's yeast (Saccharom 100.0
>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Homoserine dehydrogenase-like
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-59  Score=393.08  Aligned_cols=185  Identities=50%  Similarity=0.877  Sum_probs=176.5

Q ss_pred             chHHHHHHhhhcCCceEEEEEEecccHHHHHhccCC----CCCHHHHHHHHHHcCCCCCCcCCCCCChhhhHHHHHHHHH
Q 035486           26 PIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVG----TRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARE  101 (234)
Q Consensus        26 Pii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~----g~~f~eal~eAq~lGyaE~DP~~Dv~G~Daa~Kl~ILa~~  101 (234)
                      |||++||+++.+||+|++|+||||||||||||+|++    |.||++||++||++||||+||++||+|+|+|+|++||||+
T Consensus         1 PiI~~l~~~l~~gd~I~~i~GIlNGT~NyILt~m~~~~~~g~~f~~al~~Aq~lGyaE~DPt~Dv~G~Daa~Kl~ILa~~   80 (190)
T d1ebfa2           1 PIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRI   80 (190)
T ss_dssp             SCHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHTCSCSSTHHHHTCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHhccCeEEEEEEEEeccHHHHHHHhhhcccCCccHHHHHHHHHhcCccCCCchhhhhcchHHHHHHHHHHH
Confidence            999999999878999999999999999999999964    8999999999999999999999999999999999999995


Q ss_pred             -hCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEEEEEeeCCeeEEEEEEecCCCC
Q 035486          102 -SGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHP  180 (234)
Q Consensus       102 -~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~~~~~~~~~~~V~p~~v~~~~p  180 (234)
                       ||..+.++||+++++.|++|+.++..|.+++++..+|..+..+.+.|..+|+++|+++.++..+..++|+|++||++||
T Consensus        81 a~~~~~~~~~v~~~~i~~~gi~~i~~~d~~~~~~~~~~~~~~~~~~~a~~~~~~l~~v~~~~~~~~~~~V~p~~vp~~~p  160 (190)
T d1ebfa2          81 SGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHP  160 (190)
T ss_dssp             TTCCCCCTTSSCBCCCSCGGGSTTSCTHHHHHHHGGGHHHHHHHHHHHTTTTEEEEEEEEEETTTTEEEEEEEEEESSSG
T ss_pred             HcCCccCchhcccccccccchhccchHHHHHHhccCcchHHHHHHHHhhhcCceEEEEEEEecCCccccccceeeCCCCe
Confidence             7888889999999999999999999888999999999999999999999999999999998777789999999999999


Q ss_pred             cccccCCceEEEEEecccCCcCeEEEcCCCC
Q 035486          181 FAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG  211 (234)
Q Consensus       181 la~v~g~~N~v~i~t~~~~~~~l~~~G~GAG  211 (234)
                      |++|+|++|+|.|+|++|.+ |++|+|||||
T Consensus       161 La~v~G~~NaV~i~t~~~~g-~l~~~G~GAG  190 (190)
T d1ebfa2         161 FASLKGSDNVISIKTKRYTN-PVVIQGAGAG  190 (190)
T ss_dssp             GGGCCTTCEEEEEEESSCSS-CEEEEECCCC
T ss_pred             eeecCCCcEEEEEEecCCCC-cEEEEecCCC
Confidence            99999999999999998864 9999999998