Citrus Sinensis ID: 035491

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MHFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIEPEAKKNTRGRPNSKANASTRHDPSAFEI
Secondary Structure (PSIPRED)
cccEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHccccccccccEEEEEcccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHccccccHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcHHcHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mhfltlnnrdLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQdfisypqtIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESkhansigidvsacgctirsthglpcaHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEianpqstsliepeakkntrgrpnskanastrhdpsafei
Flexible Loop (DISEMBL)
mhfltlnnrdlalVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLteianpqstsliepeakkntrgrpnskanastrhdpsafei
Low Complexity Region (SEG)
MHFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIEPEAKKNTRGRPNSKANASTRHDPSAFEI
Disordered region (IsUnstruct)
**FLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKL*****************************************
Disordered Region (DISOPRED)
MHFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEI********************************PSAFE*
Disordered Region (DISEMBL)
MHFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIEPE**************************
Disordered Region (DISPRO)
MHFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQ**********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIEPEAKKNTRGRPNSKANASTRHDPSAFEI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
297744547	701	unnamed protein product [Vitis vinifera]	0.921	0.383	0.400	9e-61
147776975	773	hypothetical protein VITISV_001036 [Viti	0.729	0.275	0.453	1e-53
356499731	878	PREDICTED: uncharacterized protein LOC10	0.969	0.322	0.369	6e-52
356536595	877	PREDICTED: uncharacterized protein LOC10	0.965	0.321	0.361	1e-50
356529783	1403	PREDICTED: uncharacterized protein LOC10	0.845	0.176	0.360	2e-43
342877038	776	hypothetical protein FOXB_10930 [Fusariu	0.910	0.342	0.272	3e-27
92893886	985	Ovarian tumour, otubain [Medicago trunca	0.993	0.294	0.273	9e-27
325193833	471	unnamed protein product putative [Albugo	0.924	0.573	0.301	7e-26
87241356	795	Ovarian tumour, otubain [Medicago trunca	0.993	0.364	0.264	2e-25
116194290	1066	hypothetical protein CHGG_03743 [Chaetom	0.832	0.227	0.298	3e-25

>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 176/307 (57%), Gaps = 38/307 (12%)

Query: 4   LTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLL 63
           + + +R+ +L+N +++VFP A +LLCRWHI  N++A CK  F  K   + F+  WN+++L
Sbjct: 164 VVMTDREPSLMNALQKVFPMASNLLCRWHISTNILANCKIFFESKSRLDAFISMWNIVVL 223

Query: 64  SSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVE 123
           + +EDE+  RLN L+  F  Y Q I Y    WL  YKE FV+ WT K+MHFGN T N+ E
Sbjct: 224 AETEDEYANRLNQLESHFHRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFGNTTVNRAE 283

Query: 124 SLHSRLKKELGTSQ--------------ELLHTNIKVSFEKSLTIVQHPFKLAEFKELRG 169
           S  ++LK++LG S+              EL H +IK SFE SLT VQH FK   + E+RG
Sbjct: 284 STRAKLKRQLGLSRGDIESSWPKIHSLLELQHIDIKTSFEISLTNVQHNFKDPLYGEVRG 343

Query: 170 FISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYK------------- 216
            +S +AL +++ E+  + SIG+D SACGC    THGLPCAHEI+ YK             
Sbjct: 344 SVSKSALCILVDEANRSESIGVDASACGCVYSRTHGLPCAHEISSYKIRGQPIPLACVDP 403

Query: 217 -----------KKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIEP 265
                       K+  ++S+    +L  KRF + DD  K  ++ KL E+ N  STSL+ P
Sbjct: 404 HWRKLDLVSVSGKKVQDVSFTTAMELFYKRFMDADDIGKQQLVMKLMELVNSTSTSLVAP 463

Query: 266 EAKKNTR 272
           +    T+
Sbjct: 464 KENVKTK 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/227 (45%), Positives = 143/227 (62%), Gaps = 14/227 (6%)

Query: 4   LTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLL 63
           + + +R+ +L+N +++VFP A +LLCRWHI  N++A CK  F  K   + F+  WN+++L
Sbjct: 275 VVMTDREPSLMNALQKVFPMASNLLCRWHISTNILANCKIFFESKSRLDAFISMWNJVVL 334

Query: 64  SSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVE 123
           + + DE+  RLN L+  F  Y Q I Y    WL  YKE FV+ WT K+MHFGN T N+ E
Sbjct: 335 AETXDEYANRLNQLESHFHRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFGNTTVNRAE 394

Query: 124 SLHSRLKKELGTSQ--------------ELLHTNIKVSFEKSLTIVQHPFKLAEFKELRG 169
           S  ++LK++LG S               EL H +IK SFE SLT VQH FK   + E+RG
Sbjct: 395 STRAKLKRQLGLSXGDIESSWPKIHSLLELQHXDIKTSFEISLTNVQHNFKDPLYGEVRG 454

Query: 170 FISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYK 216
            +S +AL +++ E+  + SIG+D SACGC    THGLPCAHEI+ YK
Sbjct: 455 SVSKSALCILVDEANRSESIGVDASACGCVYSRTHGLPCAHEISSYK 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 179/325 (55%), Gaps = 42/325 (12%)

Query: 10  DLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDE 69
           D+AL++ ++ VFP++ +LLCR+HI +NV AKCK +   KE  +  M +W+V++ S +E E
Sbjct: 325 DIALMSAVQVVFPSSSNLLCRFHINQNVKAKCKSIVHSKEKQDMVMDAWDVIVNSPNEGE 384

Query: 70  FITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRL 129
           ++ RL   +   + +P   +YV +TWL  +KE FV+AWT ++MH GN  TN+VE+ H RL
Sbjct: 385 YMQRLAFFENVCLDFPIFGDYVKNTWLIPHKEKFVTAWTNRVMHLGNTATNRVEATHWRL 444

Query: 130 KKELGTSQE--------------LLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITA 175
           K  L  S+E              L HT I+ SFEKS  +V+H      + +L GF+S +A
Sbjct: 445 KTLLQDSKEDMCSYWDAMKNMITLQHTEIEASFEKSKNVVEHRHNTPFYVKLVGFVSRSA 504

Query: 176 LQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYK---------------KKRK 220
           L  +  E     + GID S CGC +R+THGLPCA E+A Y                +K K
Sbjct: 505 LSHITEEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYSTMCHPIPLEAIHAHWRKLK 564

Query: 221 ----------AEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIEPEAKKN 270
                     +E+S +P  D + KRF E D   K+ ++ KL E+A P +     P  +  
Sbjct: 565 FSDHGTNDNGSELSLQPEVDALYKRFQELDYAGKIILMAKLHEMAFPDTALKCLPPEEVG 624

Query: 271 TRGRPNS---KANASTRHDPSAFEI 292
           T+G P     K++ ST+ DPS  E+
Sbjct: 625 TKGAPEGLRWKSDGSTKFDPSYLEL 649

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 174/324 (53%), Gaps = 42/324 (12%)

Query: 10  DLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDE 69
           D+AL++ ++ VFP++ +LLCR+HI +NV AKCK +  +KE  E  M +W+V++ S +E E
Sbjct: 322 DIALMSAVQVVFPSSSNLLCRFHINQNVKAKCKSIVHLKEKQELMMDAWDVVVNSPNEGE 381

Query: 70  FITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRL 129
           ++ RL   +   + +P   +YV +TWL  +KE FV+AWT ++MH GN  TN+VE+ H RL
Sbjct: 382 YMQRLAFFENVCLDFPILCDYVKNTWLIPHKEKFVTAWTNQVMHLGNTATNRVEATHWRL 441

Query: 130 KKELGTSQE--------------LLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITA 175
           K  L  S+E              L H  I+ SFEKS+ +V+H      + +L GF+S +A
Sbjct: 442 KTLLQDSKEDMCSYWDAMKNIITLQHKEIEASFEKSINVVEHRHNTPFYIKLVGFVSRSA 501

Query: 176 LQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEY-------------------- 215
           L  ++ E     + GID S CGC +R+THGLPCA E+A Y                    
Sbjct: 502 LSHIIDEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYNTMCHPIPLEAIHVHWRKLK 561

Query: 216 -----KKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIEPEAKKN 270
                      E+S +P    +  RF E D   K+ ++ KL EIA P   S   P  +  
Sbjct: 562 FSDHVSNDEGTELSLQPEIGALYNRFQELDYAGKIILMAKLHEIAFPVKISKCPPLEEVG 621

Query: 271 TRGR---PNSKANASTRHDPSAFE 291
           T+     P  K++ ST+ DPS +E
Sbjct: 622 TKHALEGPRLKSDGSTKFDPSYWE 645

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529783|ref|XP_003533467.1| PREDICTED: uncharacterized protein LOC100782358 [Glycine max]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 161/294 (54%), Gaps = 47/294 (15%)

Query: 9    RDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSED 68
            RD+AL++ ++ VFP++ +LLCR+HI KNV AKCK +   KE ++  M +W+ ++ S +E 
Sbjct: 1089 RDIALMDAVQVVFPSSSNLLCRFHISKNVKAKCKLIVHPKERYDLVMDAWDSVMNSPNEG 1148

Query: 69   EFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSR 128
            E++ RL  L++    +P   +YV +TWL  +KE FV AW  ++MH GN T ++ E+ H R
Sbjct: 1149 EYMQRLTLLEKVCSDFPTFGDYVKNTWLIPHKEKFVMAWVDRVMHLGNTTIDRFETAHWR 1208

Query: 129  LKKELGTSQ--------------ELLHTNIKVSFEKSLTIVQH--PFKLAEFKELRGFIS 172
            L+  L  S               +L HT IKVSFEKS+ IV++  PF    + +LRGF+S
Sbjct: 1209 LENLLQDSGGDMCSCWDAVNNMIKLQHTQIKVSFEKSINIVEYNDPF----YSKLRGFVS 1264

Query: 173  ITALQMVLTESKHANSIGIDV--SACGCTIRSTHGLPCAHEIAEYKK------------- 217
              AL  +        ++GID+  S CGCTIR+THGLPCA E+A+Y +             
Sbjct: 1265 RNALSYIADHYDRVKTVGIDIDGSLCGCTIRTTHGLPCACELAKYSRTWHPIPLQAIHVH 1324

Query: 218  ------------KRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQS 259
                            E++ +   D +  +F E D   K+ +  KL E+A P +
Sbjct: 1325 WRTLNFSDQEMNNEGLELALQREVDALHNQFQELDYAGKITLKAKLRELAFPDA 1378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342877038|gb|EGU78559.1| hypothetical protein FOXB_10930 [Fusarium oxysporum Fo5176]

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 50/316 (15%)

Query: 4   LTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEI-----------WE 52
           + L +R LA +N + R FP A  LLC WH  K V+  C+  FT  +            W 
Sbjct: 295 VILTDRCLACMNAVARCFPTAISLLCLWHANKAVLRYCQPTFTRHDQGLEARRESLNDWN 354

Query: 53  KFMMSWNVLLLSSSEDEFITRLNALQQDFI-SYPQTIEYVTSTWLDKYKENFVSAWTYKI 111
           +F   W+ ++ S+ E+ F  R+  L++ ++  Y + + Y+ + WLD YKE  V AW  + 
Sbjct: 355 EFFNCWHSIVRSADEETFDQRVKGLEERYLPQYLEEVGYIKANWLDLYKEKLVKAWVDQY 414

Query: 112 MHFGNLTTNKVESLHSRLKKELGTS------------QELLHTNIKVSFEKSLTIVQHPF 159
            HFGN+ T++VE +H+ LK  L  S              LL+   ++ + ++    + P 
Sbjct: 415 PHFGNVVTSRVEGIHALLKSHLKKSTLDLFEAWRAVKHALLNQLAELRYNQAKQQSRVPI 474

Query: 160 KLAE--FKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKK 217
           +L+   +  + G++S  AL+ V  E +    +  D+ AC      +HGLPC H       
Sbjct: 475 ELSGVLYSAVHGWVSHEALRKV--EEQRKLLLKEDLPACTGAFSRSHGLPCVH------- 525

Query: 218 KRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTS-LIEPEAKKNTRGRPN 276
                         + K   E D   +L    +   ++ P S   L+EP    +     +
Sbjct: 526 --------------MLKTLQEQDQPLRLEHFHRHWHLSRPGSPQLLLEPRQHIDRVANNS 571

Query: 277 SKANASTRHDPSAFEI 292
           +K  +S R +PSAFE+
Sbjct: 572 AKPQSSIRREPSAFEV 587

Source: Fusarium oxysporum Fo5176

Species: Fusarium oxysporum

Genus: Fusarium

Family: Nectriaceae

Order: Hypocreales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|92893886|gb|ABE91936.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 168/351 (47%), Gaps = 61/351 (17%)

Query: 1   MHFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKC-------------KKLFTI 47
           MH + + +RD++L+  +  VFP +  L C +H++ NV  +C              K  + 
Sbjct: 338 MHKVIVTDRDMSLMKAVAHVFPESYALNCFFHVQANVKQRCVLNCKYPLGFKKDGKEVSN 397

Query: 48  KEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAW 107
           +++ +K M +W  ++ S ++  +   L   +     +P  ++Y  +T LD+ K+  V AW
Sbjct: 398 RDVVKKIMNAWKAMVESPNQQLYANALVEFKDSCSDFPIFVDYAMTT-LDEVKDKIVRAW 456

Query: 108 TYKIMHFGNLTTNKVESLHSRLKK-------ELGTSQELLH-------TNIKVSFEKSLT 153
           T  ++H G  TTN+VES H+ LKK       +LGT  E +H       T I+ SF +++ 
Sbjct: 457 TDHVLHLGCRTTNRVESAHALLKKYLDNSVGDLGTCWEKIHHMLLLQFTAIQTSFGQNVC 516

Query: 154 IVQHPFK-LAEFKELRGFISITALQ-MVLTESKHANSIGIDVSACGCTIRSTHGLPCAHE 211
           +++H FK +  +  L G +S  AL  + L E +   ++ +D   CGC  R+++GLPCA E
Sbjct: 517 VLEHRFKDVTLYSGLGGHVSRNALDNIALEEKRCRETLCMDNDICGCVQRTSYGLPCACE 576

Query: 212 IAEYKKKRK----------------AEMSYRPIFDL------IAKRFNENDDDAKLHILQ 249
           IA    + K                 E S    F +      I +R  +     KL + +
Sbjct: 577 IATKLLQEKPILLDEIYHHWLRLSMGEQSNEDAFCVEVELKAIVERLKKLPFQMKLEVKE 636

Query: 250 KLTEIANPQSTSLIEPEAKKNTRG--------RPNSKANASTRHDPSAFEI 292
            L ++A P++T +  P  K  T+G        R   K  +++R  PS++E+
Sbjct: 637 GLRQLAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSR-IPSSWEV 686

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325193833|emb|CCA28031.1| unnamed protein product putative [Albugo laibachii Nc14]

 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 158/325 (48%), Gaps = 55/325 (16%)

Query: 6   LNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSS 65
           + +RDLAL+  +  VFPNA  LLC WHI KN++AK +  F   E   +F ++WNVL+ S+
Sbjct: 126 ITDRDLALMTALSEVFPNAGTLLCSWHISKNILAKYRTSFPSHESLNEFTLAWNVLVNST 185

Query: 66  SEDEFITRLNALQQDFISYPQTI-EYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVES 124
           ++ ++   +  ++   I+ P  +  Y+ STWL  +K+ FV+AW   I+HFG+ T ++VES
Sbjct: 186 TKVKYTVNVEEMR---IAIPLCVMSYLESTWL-IHKDKFVTAWISNILHFGHTTNSRVES 241

Query: 125 LHSRLKKELGTSQELLHTN-------IKVSFEKSLTIV-QHPFKLAEFKELR-------- 168
            H+ LK   G+   L+ +        IK++ ++ L IV Q  FK      LR        
Sbjct: 242 AHAALKN--GSEYRLVISGLLSVNMAIKLACDRQLAIVRQQNFKDCAVSSLRFGPIFAKV 299

Query: 169 -GFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKAEMSY-- 225
            G IS+  L+    E +      I+ + C    R T G PC+HE    +  +  E++Y  
Sbjct: 300 MGNISVGGLRAAYGEYEQR----INTTDCHGITRGTMGHPCSHEF-RIRGNQSLEIAYFD 354

Query: 226 ------RPI----------FDLIAKRFNEN-DDDAKLHILQKLTE--IANPQSTSLIEPE 266
                  P+          F  + KR  +N + +   +  Q++ +  +A P    + +P 
Sbjct: 355 THWWLDSPVYIHATDETSSFANVLKRIQDNYESEISAYRRQRIHQYLLALPAELDIRDP- 413

Query: 267 AKKNTRGRPNSKANASTRHDPSAFE 291
                RGRP    + ST   PS FE
Sbjct: 414 VHMQGRGRP----SGSTARLPSEFE 434

Source: Albugo laibachii Nc14

Species: Albugo laibachii

Genus: Albugo

Family: Albuginaceae

Order: Albuginales

Superkingdom: Eukaryota

>gi|87241356|gb|ABD33214.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 167/351 (47%), Gaps = 61/351 (17%)

Query: 1   MHFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKC-------------KKLFTI 47
           M  + + +RD++L+  +  +FP +  L C +H++ NV  +C              K  + 
Sbjct: 148 MPKVIVTDRDMSLMKAVAHIFPESYALNCFFHVQANVKQRCVLNCKYPLGFKKDGKEVSN 207

Query: 48  KEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAW 107
           +++ +K M +W  ++ S ++  +   L   +     +P  ++Y  +T LD+ K+  V AW
Sbjct: 208 RDVVKKIMNAWKAMVESPNQQLYANALVEFKDSCSDFPIFVDYAMTT-LDEVKDKIVRAW 266

Query: 108 TYKIMHFGNLTTNKVESLHSRLKK-------ELGTSQELLH-------TNIKVSFEKSLT 153
           T  ++H G  TTN+VES H+ LKK       +LGT  E +H       T I+ SF +++ 
Sbjct: 267 TDHVLHLGCRTTNRVESAHALLKKYLDNSVGDLGTCWEKIHHMLLLQLTAIQTSFGQNVC 326

Query: 154 IVQHPFK-LAEFKELRGFISITALQ-MVLTESKHANSIGIDVSACGCTIRSTHGLPCAHE 211
           +++H FK +  +  L G +S  AL  + L E +   ++ +D   CGC  R+++GLPCA E
Sbjct: 327 VLEHRFKDVTLYSGLGGHVSRNALDNIALEEKRCRETLCMDNDICGCVQRTSYGLPCACE 386

Query: 212 IA----------------EYKKKRKAEMSYRPIFDL------IAKRFNENDDDAKLHILQ 249
           IA                 + +    E S    F +      I +R  +     KL + +
Sbjct: 387 IATKLFQEKPILLDEIYHHWLRLSMGEQSNEDAFCVEVELKAIVERLKKLPFQMKLEVKE 446

Query: 250 KLTEIANPQSTSLIEPEAKKNTRG--------RPNSKANASTRHDPSAFEI 292
            L ++A P++T +  P  K  T+G        R   K  +++R  PS++E+
Sbjct: 447 GLRQLAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSR-IPSSWEV 496

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116194290|ref|XP_001222957.1| hypothetical protein CHGG_03743 [Chaetomium globosum CBS 148.51] gi|88179656|gb|EAQ87124.1| hypothetical protein CHGG_03743 [Chaetomium globosum CBS 148.51]

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 150/315 (47%), Gaps = 72/315 (22%)

Query: 4   LTLNNRDLALVNTIERV-FPNAKHLLCRWHIKKNVIAKCKKLFTIK----------EIWE 52
           L ++NR+LAL+  + +  +    HLLCRWH+  NV+AK ++ F               ++
Sbjct: 647 LMVSNRELALLKALNKSSWAAVPHLLCRWHVNMNVLAKARRHFPPATKVGAEYQRHPKFK 706

Query: 53  KFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIM 112
           +F+  WN LL +S+E+ + + L   +       + I+YVT TWLD +KE  V+AWT K+ 
Sbjct: 707 EFLKEWNALLAASTEEVYESTLAKFKAPGRHPEEAIKYVTKTWLDPWKEKLVAAWTNKVP 766

Query: 113 HFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFIS 172
           H G++TT+ VES HS +KK L +S+  L         KS++    PF L           
Sbjct: 767 HMGHVTTSAVESAHSAIKKYLISSKADL---------KSIS----PFAL----------E 803

Query: 173 ITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEI---------AEYKKKRKAEM 223
           + A+++    +K+A    ++ S C C++ +THGLPC H +          E K+  K   
Sbjct: 804 LLAMEIAALPAKNAP---LEGSTCSCSLPTTHGLPCRHTLYKHINGVIPLELKQVHKHWW 860

Query: 224 SYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIEPEAKKNTRGRP-------N 276
           +YRP+  +  +    +  D  L+                  P A K  +GRP        
Sbjct: 861 NYRPVTLVQEQPMTSSMPDIPLN------------------PLAVKG-KGRPFRAIATKK 901

Query: 277 SKANASTRHDPSAFE 291
            +   ST+  PSAFE
Sbjct: 902 GEGIKSTKRLPSAFE 916

Source: Chaetomium globosum CBS 148.51

Species: Chaetomium globosum

Genus: Chaetomium

Family: Chaetomiaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
CGD|CAL0004344	568	orf19.4703 [Candida albicans (	0.380	0.195	0.283	6.4e-08
UNIPROTKB|Q5AME3	568	CaO19.4703 "Putative uncharact	0.380	0.195	0.283	6.4e-08

CGD|CAL0004344 orf19.4703 [Candida albicans (taxid:5476)]

 Score = 151 (58.2 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
 Identities = 34/120 (28%), Positives = 63/120 (52%)

Query:    14 VNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITR 73
             ++ I+ VFP +   +C+WHI +NV  + + +F  KE  +  +     L  +S++DE   +
Sbjct:   118 LSAIKTVFPESSVSICKWHILRNVRTEARSIFNDKESQDYAVAKITALFDNSTKDEIAQK 177

Query:    74 LNALQQDFISYPQTIEYVTSTWLDKYKENFVSAW--TYKI-MHFGNLTTNKVESLHSRLK 130
             ++  ++ F  YP+ + Y       KY EN + +W    K+ ++  N T N +ES H  +K
Sbjct:   178 IHEFKEQFKDYPKWLNYF------KYCENLLRSWMNNAKVSLNQENSTNNCIESYHRTIK 231

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AME3 CaO19.4703 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 151 (58.2 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
 Identities = 34/120 (28%), Positives = 63/120 (52%)

Query:    14 VNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITR 73
             ++ I+ VFP +   +C+WHI +NV  + + +F  KE  +  +     L  +S++DE   +
Sbjct:   118 LSAIKTVFPESSVSICKWHILRNVRTEARSIFNDKESQDYAVAKITALFDNSTKDEIAQK 177

Query:    74 LNALQQDFISYPQTIEYVTSTWLDKYKENFVSAW--TYKI-MHFGNLTTNKVESLHSRLK 130
             ++  ++ F  YP+ + Y       KY EN + +W    K+ ++  N T N +ES H  +K
Sbjct:   178 IHEFKEQFKDYPKWLNYF------KYCENLLRSWMNNAKVSLNQENSTNNCIESYHRTIK 231

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Pc21g00130 Pc21g00130 (605 aa) (Penicillium chrysogenum)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
pfam10551	88	pfam10551, MULE, MULE transposase domain	2e-07

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 8  NRDLALVNTIERVFPNAKHLLCRWHIKKNV 37
          + D  L   I+ VFPNA+H LC WHI +N+
Sbjct: 58 DGDKGLKKAIKEVFPNARHRLCLWHILRNL 87

This domain was identified by Babu and colleagues. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.51
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.12
COG3328	379	Transposase and inactivated derivatives [DNA repli	98.73
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.66
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.68
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	96.37
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	95.8

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=7.9e-33  Score=272.80  Aligned_cols=211  Identities=19%  Similarity=0.254  Sum_probs=161.9

Q ss_pred             CcEEEecccHHHHHHHHHhCccccchhHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHhh
Q 035491            2 HFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWN-VLLLSSSEDEFITRLNALQQD   80 (292)
Q Consensus         2 P~viitD~~~al~~Ai~~vfP~a~~~lC~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~-~l~~a~t~~ef~~~~~~l~~~   80 (292)
                      |.+||||+|.||.+||++|||++.|++|.|||.+|+.+++...+..   .+.|...|. +|..+.|++||+..|..|+++
T Consensus       348 P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~---~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~k  424 (846)
T PLN03097        348 PKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQ---HENFMAKFEKCIYRSWTEEEFGKRWWKILDR  424 (846)
T ss_pred             CceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhh---hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999877643   357888886 678899999999999999999


Q ss_pred             ccCchhhhHHHhhhhhhhhhhhhhhhhhccccccCCCcCchhhhhhHHhhhhhcchHHHHH--------------HHHHH
Q 035491           81 FISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLH--------------TNIKV  146 (292)
Q Consensus        81 ~~~~p~~~~Y~~~~Wl~~~k~~w~~~~~~~~~~~g~~Ttnr~ES~n~~lK~~l~~~~~lq~--------------~~i~~  146 (292)
                      |+...  -+||..-  ...|++||++|+++.|.+|+.||+|+||+|+.||+|+...++|..              .++++
T Consensus       425 y~L~~--n~WL~~L--Y~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~a  500 (846)
T PLN03097        425 FELKE--DEWMQSL--YEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKA  500 (846)
T ss_pred             hcccc--cHHHHHH--HHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            86321  1234332  258999999999999999999999999999999999999885421              12333


Q ss_pred             HHHhhhhhhcCccchhhhhhhhccccHHHHHHHHHHHHHhhhC--------C-------------------CC----CCC
Q 035491          147 SFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESKHANSI--------G-------------------ID----VSA  195 (292)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~g~iS~~al~~~~~q~~~~~~~--------~-------------------~d----~~~  195 (292)
                      +++............++.....+..|+.++.++.+|+..+...        |                   .|    ..+
T Consensus       501 D~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~  580 (846)
T PLN03097        501 DSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVS  580 (846)
T ss_pred             hhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEE
Confidence            3333221110001113444566777888888888887653210        0                   01    258


Q ss_pred             ccceeccccccchhhHhHHHHHhc
Q 035491          196 CGCTIRSTHGLPCAHEIAEYKKKR  219 (292)
Q Consensus       196 Csc~~~~~~GiPC~H~l~~~~~~~  219 (292)
                      |+|..|+..||||+|+|+++...+
T Consensus       581 CsC~kFE~~GILCrHaLkVL~~~~  604 (846)
T PLN03097        581 CICRLFEYKGYLCRHALVVLQMCQ  604 (846)
T ss_pred             eeccCeecCccchhhHHHHHhhcC
Confidence            999999999999999999999854

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.51  E-value=1.6e-15  Score=140.73  Aligned_cols=124  Identities=20%  Similarity=0.323  Sum_probs=101.7

Q ss_pred             CcEEEecccHHHHHHHHHhCccccchhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 035491            2 HFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDF   81 (292)
Q Consensus         2 P~viitD~~~al~~Ai~~vfP~a~~~lC~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~a~t~~ef~~~~~~l~~~~   81 (292)
                      |..||+|..+||..||+++||++.++.|.+|+.+|+.+++.+     .+++.+..+++.++.+.+.+++...++.|.+.+
T Consensus       228 ~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~-----k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~  302 (381)
T PF00872_consen  228 ILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPK-----KDRKEVKADLKAIYQAPDKEEAREALEEFAEKW  302 (381)
T ss_pred             cceeeccccccccccccccccchhhhhheechhhhhcccccc-----ccchhhhhhccccccccccchhhhhhhhccccc
Confidence            678999999999999999999999999999999999998764     345678889999999999999999999999988


Q ss_pred             c-CchhhhHHHhhhhhhhhhhhhhhhh-hccccccCCCcCchhhhhhHHhhhhhcc
Q 035491           82 I-SYPQTIEYVTSTWLDKYKENFVSAW-TYKIMHFGNLTTNKVESLHSRLKKELGT  135 (292)
Q Consensus        82 ~-~~p~~~~Y~~~~Wl~~~k~~w~~~~-~~~~~~~g~~Ttnr~ES~n~~lK~~l~~  135 (292)
                      . .+|.+.++++++|-.    .| .+| +....+--.+|||.+||+|+.||+....
T Consensus       303 ~~kyp~~~~~l~~~~~~----~~-tf~~fP~~~~~~i~TTN~iEsln~~irrr~~~  353 (381)
T PF00872_consen  303 EKKYPKAAKSLEENWDE----LL-TFLDFPPEHRRSIRTTNAIESLNKEIRRRTKV  353 (381)
T ss_pred             ccccchhhhhhhhcccc----cc-ceeeecchhccccchhhhccccccchhhhccc
Confidence            6 689999999988742    11 111 1111122468999999999999986543

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.12  E-value=3.9e-11  Score=88.99  Aligned_cols=37  Identities=41%  Similarity=0.753  Sum_probs=35.6

Q ss_pred             CcEEEecccHHHHHHHHHhCccccchhHHHHHHHHHH
Q 035491            2 HFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVI   38 (292)
Q Consensus         2 P~viitD~~~al~~Ai~~vfP~a~~~lC~~Hi~~n~~   38 (292)
                      |.+||||++.|+++||++|||++.|++|.||+.||++
T Consensus        57 p~~ii~D~~~~~~~Ai~~vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   57 PKVIISDFDKALINAIKEVFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             ceeeeccccHHHHHHHHHHCCCceEehhHHHHHHhhC
Confidence            8899999999999999999999999999999999973

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=98.73  E-value=3.8e-08  Score=90.45  Aligned_cols=122  Identities=18%  Similarity=0.239  Sum_probs=97.2

Q ss_pred             EEEecccHHHHHHHHHhCccccchhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc-
Q 035491            4 LTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFI-   82 (292)
Q Consensus         4 viitD~~~al~~Ai~~vfP~a~~~lC~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~a~t~~ef~~~~~~l~~~~~-   82 (292)
                      .+++|...++-+||..+||.+.++.|..|+.+|+.++...     .+++.....+..+..+++.++....|..+.+.+. 
T Consensus       209 l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~-----k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~  283 (379)
T COG3328         209 LVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPR-----KDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGK  283 (379)
T ss_pred             EEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhh-----hhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhh
Confidence            4677999999999999999999999999999999988764     4567788888889999999999999999988776 


Q ss_pred             CchhhhHHHhhhhhhhhhhhhhhhhhccccc---cCCCcCchhhhhhHHhhhhhcchH
Q 035491           83 SYPQTIEYVTSTWLDKYKENFVSAWTYKIMH---FGNLTTNKVESLHSRLKKELGTSQ  137 (292)
Q Consensus        83 ~~p~~~~Y~~~~Wl~~~k~~w~~~~~~~~~~---~g~~Ttnr~ES~n~~lK~~l~~~~  137 (292)
                      .+|.....+.++|..    .+   ++..++.   --..|||.+|++|..++.......
T Consensus       284 ~yP~i~~~~~~~~~~----~~---~F~~fp~~~r~~i~ttN~IE~~n~~ir~~~~~~~  334 (379)
T COG3328         284 RYPAILKSWRNALEE----LL---PFFAFPSEIRKIIYTTNAIESLNKLIRRRTKVVG  334 (379)
T ss_pred             hcchHHHHHHHHHHH----hc---ccccCcHHHHhHhhcchHHHHHHHHHHHHHhhhc
Confidence            589998888887753    11   0111111   126899999999998887655543

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.66  E-value=1.2e-08  Score=57.96  Aligned_cols=25  Identities=28%  Similarity=0.675  Sum_probs=22.5

Q ss_pred             CCccceeccccccchhhHhHHHHHh
Q 035491          194 SACGCTIRSTHGLPCAHEIAEYKKK  218 (292)
Q Consensus       194 ~~Csc~~~~~~GiPC~H~l~~~~~~  218 (292)
                      .+|||+.|+..||||+|+|+++...
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~   25 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHI   25 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHh
Confidence            3799999999999999999998754

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.68  E-value=2.2e-05  Score=48.50  Aligned_cols=26  Identities=27%  Similarity=0.602  Sum_probs=23.5

Q ss_pred             CCCCccceeccccccchhhHhHHHHH
Q 035491          192 DVSACGCTIRSTHGLPCAHEIAEYKK  217 (292)
Q Consensus       192 d~~~Csc~~~~~~GiPC~H~l~~~~~  217 (292)
                      ....|+|..|+..|.||+|++|+++.
T Consensus        13 ~~~~CsC~~~~~~~~~CkHi~av~~~   38 (40)
T PF04434_consen   13 EQASCSCPYFQFRGGPCKHIVAVLLA   38 (40)
T ss_pred             cccEeeCCCccccCCcchhHHHHHHh
Confidence            35799999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=96.37  E-value=0.0011  Score=57.92  Aligned_cols=40  Identities=20%  Similarity=0.211  Sum_probs=36.9

Q ss_pred             cEEEecccHHHHHHHHHhCccccchhHHHHHHHHHHHHhh
Q 035491            3 FLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCK   42 (292)
Q Consensus         3 ~viitD~~~al~~Ai~~vfP~a~~~lC~~Hi~~n~~~~~~   42 (292)
                      ++|++|...+-..||++.||+|.+..-.|||.+++...+.
T Consensus        58 ~~V~~Dm~~~y~~~~~~~~P~A~iv~DrFHvvk~~~~al~   97 (249)
T PF01610_consen   58 KVVSMDMSPPYRSAIREYFPNAQIVADRFHVVKLANRALD   97 (249)
T ss_pred             EEEEcCCCccccccccccccccccccccchhhhhhhhcch
Confidence            6899999999999999999999999999999999877543

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=95.80  E-value=0.064  Score=51.46  Aligned_cols=117  Identities=17%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             EEEecccHHHHHHHHHhCccccchhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 035491            4 LTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFIS   83 (292)
Q Consensus         4 viitD~~~al~~Ai~~vfP~a~~~lC~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~a~t~~ef~~~~~~l~~~~~~   83 (292)
                      ++..|+...+.++++ .||++.+.|..||+.+.+...++..   .+..+.+   +++ ....+..++...++.+......
T Consensus       261 iingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~---~~~~~~~---~~a-l~~~d~~~l~~~L~~~~~~~~~  332 (470)
T PF06782_consen  261 IINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHD---PELKEKI---RKA-LKKGDKKKLETVLDTAESCAKD  332 (470)
T ss_pred             EEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhC---hHHHHHH---HHH-HHhcCHHHHHHHHHHHHHhhhc
Confidence            567899999988776 9999999999999999998776532   1222222   222 2345566666666666543321


Q ss_pred             ------chhhhHHHhhhhhhhhhhhhhhhhhccccccCCCcCchhhhhhHHhhhhhcchH
Q 035491           84 ------YPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHSRLKKELGTSQ  137 (292)
Q Consensus        84 ------~p~~~~Y~~~~Wl~~~k~~w~~~~~~~~~~~g~~Ttnr~ES~n~~lK~~l~~~~  137 (292)
                            ...+..|+.++|=. .     ..|...   .|....+..||.|..+...++...
T Consensus       333 ~~~~~~i~~~~~Yl~~n~~~-i-----~~y~~~---~~~~g~g~ee~~~~~~s~RmK~rg  383 (470)
T PF06782_consen  333 EEERKKIRKLRKYLLNNWDG-I-----KPYRER---EGLRGIGAEESVSHVLSYRMKSRG  383 (470)
T ss_pred             hHHHHHHHHHHHHHHHCHHH-h-----hhhhhc---cCCCccchhhhhhhHHHHHhcCCC
Confidence                  23678899998842 1     112111   345556668999998877666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 40/262 (15%), Positives = 80/262 (30%), Gaps = 76/262 (29%)

Query: 18  ERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNAL 77
            + + N   LL    +  NV           + W  F +S  +LL         TR    
Sbjct: 240 SKPYENC--LL----VLLNV--------QNAKAWNAFNLSCKILL--------TTR-FKQ 276

Query: 78  QQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLHS---------- 127
             DF+S   T        LD +           +         + + L            
Sbjct: 277 VTDFLSAATTTHIS----LDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRL 330

Query: 128 -----RLKKELGTSQELLHTNI-KVS--FEKSLTIVQHPFKLAE-FKELRGF-----ISI 173
                 ++  L T     H N  K++   E SL  V  P +  + F  L  F     I  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 174 TALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYK--KKRKAEMSYRPIFDL 231
             L ++  +   ++ + +                  +++ +Y   +K+  E +   I  +
Sbjct: 390 ILLSLIWFDVIKSDVMVV-----------------VNKLHKYSLVEKQPKESTIS-IPSI 431

Query: 232 IAKRFNENDDDAKLHILQKLTE 253
             +   + +++  LH  + + +
Sbjct: 432 YLELKVKLENEYALH--RSIVD 451

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	89.55

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=89.55  E-value=0.27  Score=25.64  Aligned_cols=10  Identities=50%  Similarity=0.926  Sum_probs=8.6

Q ss_pred             cCCCCCCCCC
Q 035491          268 KKNTRGRPNS  277 (292)
Q Consensus       268 k~~~kGrPk~  277 (292)
                      .++++|||||
T Consensus         4 pKrpRgRpkG   13 (26)
T 2ezd_A            4 PKRPRGRPKG   13 (26)
T ss_dssp             CCCCSSCCTT
T ss_pred             CcCCCCCcCc
Confidence            3788999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00