Citrus Sinensis ID: 035503
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FM64 | 830 | Pentatricopeptide repeat- | yes | no | 0.972 | 0.922 | 0.556 | 0.0 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.892 | 0.724 | 0.322 | 1e-113 | |
| Q9FXH1 | 894 | Pentatricopeptide repeat- | no | no | 0.909 | 0.802 | 0.314 | 1e-112 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.879 | 0.721 | 0.316 | 1e-112 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.926 | 0.851 | 0.302 | 1e-110 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.946 | 0.838 | 0.311 | 1e-110 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.746 | 0.675 | 0.335 | 1e-109 | |
| Q9FNN9 | 849 | Putative pentatricopeptid | no | no | 0.871 | 0.809 | 0.318 | 1e-108 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.790 | 0.819 | 0.328 | 1e-108 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.851 | 0.760 | 0.306 | 1e-107 |
| >sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/830 (55%), Positives = 608/830 (73%), Gaps = 64/830 (7%)
Query: 1 MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
MAS F T PN K + KP S H + S +S SYFH++SSL K +I
Sbjct: 1 MASLPFNTIPN-KVPFSVSSKP---SSKHHDEQAHSPSS-----TSYFHRVSSLCKNGEI 51
Query: 61 REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
+EA+ L+TEM RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+ARNEY+ET
Sbjct: 52 KEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIET 111
Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
KLV+FYAKCDAL++A LF +LRV+NVFSWAAIIG+ CR+GL E AL+GFVEM E+ + P
Sbjct: 112 KLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFP 171
Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
DNFV+PNV KACGAL W FGR VHGYV+K G + CVFVASSL DMYGKCG L++A KVF
Sbjct: 172 DNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVF 231
Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
D + RN VAWN+++VGYVQNG NEEAIR+F +M +GVEPTRV+V++ LSASAN+ ++
Sbjct: 232 DEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVE 291
Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
EGKQ+HA+A++NGMELDN+LG+S++NFY KVGL+E AE+VF RM E+D+VTWNL+I+ YV
Sbjct: 292 EGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYV 351
Query: 361 QSG----------------------------------------------------QSDVV 368
Q G +SD+V
Sbjct: 352 QQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIV 411
Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
+AS+++DMYAKC I +AK+VF+S + +D++LWNTLLAAYA+ G SGEA RLFY MQLEG
Sbjct: 412 LASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEG 471
Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
+ PN+I+WN +IL LRNGQ++EAKDMFLQMQS G+ PNLI+WTT+++G+ QN C EAI
Sbjct: 472 VPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAI 531
Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDM 547
LF ++M E+G++P+ +IT ALSAC +ASL GR IHGY+IR+ I TSLVDM
Sbjct: 532 LFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDM 591
Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
YAKCG+I++A++VF ELP+ NAMIS YA++G EA+AL+++L+ G+ PD+IT
Sbjct: 592 YAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITI 651
Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
TN+L+AC+HAG +N+ +E+F + S +KP +EH+G +V+LL+ G ++ALR+I MP
Sbjct: 652 TNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMP 711
Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
PDA +I SL+++C K +TEL +Y+S LL+ EP+N GNYV +SNAYA G W+EV +
Sbjct: 712 FKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVK 771
Query: 728 VRDIMKEKGLRKNPGCSWIQI-GEE-LHVFVACDRSHPKTEEIYATLALL 775
+R++MK KGL+K PGCSWIQI GEE +HVFVA D++H + EI LALL
Sbjct: 772 MREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMMLALL 821
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Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor involved in the edition of the site 2 of ndhD (ndhD-2), which encodes a subunit of the NDH complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/797 (32%), Positives = 411/797 (51%), Gaps = 94/797 (11%)
Query: 75 FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE-TKLVVFYAKCDALD 133
F + E G LLQ ++D+ G++IH L +G RN+ V T+++ YA C + D
Sbjct: 80 FLLVREALGLLLQASGKRKDIEMGRKIHQ--LVSGSTRLRNDDVLCTRIITMYAMCGSPD 137
Query: 134 VASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEM-QEDGVSPDNFVLPNVLKAC 192
+ +F LR KN+F W A+I R L ++ L F+EM + PD+F P V+KAC
Sbjct: 138 DSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC 197
Query: 193 GALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWN 252
+ VG G AVHG V+K G VFV ++L+ YG G + +A ++FD M RN+V+WN
Sbjct: 198 AGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWN 257
Query: 253 SMIVGYVQNGLNEEAIRVFYEMTLEGVE----PTRVSVTSILSASANLDALDEGKQAHAV 308
SMI + NG +EE+ + EM E + P ++ ++L A + GK H
Sbjct: 258 SMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGW 317
Query: 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY--------- 359
AV ++ + VL +++++ YSK G + +A+++F +++V+WN ++ +
Sbjct: 318 AVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGT 377
Query: 360 ------VQSGQSDV---------------------------------------VVASSIV 374
+ +G DV +VA++ V
Sbjct: 378 FDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFV 437
Query: 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434
YAKC + A++VF+ I + V WN L+ +A + QM++ G+ P+
Sbjct: 438 ASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSF 497
Query: 435 SWNSVI-----LGFLRNGQMNEA--------KDMFLQMQSLGV----------------- 464
+ S++ L LR G+ +D+F+ + L +
Sbjct: 498 TVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAM 557
Query: 465 -QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523
+L++W T+I+G QN + A+ F++M+ GI+ ++ AC+ + SLR GR
Sbjct: 558 EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGR 617
Query: 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
H Y ++H L I SL+DMYAK G+I Q+ +VF+ K +NAMI GY +HG
Sbjct: 618 EAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHG 677
Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
LA EA+ LF+ +Q+ G +PD +TF +L AC+H+GL++EGL M S +KP+++H+
Sbjct: 678 LAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHY 737
Query: 644 GCVVNLLSRCGNLDEALRVIL-TMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702
CV+++L R G LD+ALRV+ M + D I SLLS+C E+ E ++ L +LE
Sbjct: 738 ACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELE 797
Query: 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSH 762
P+ P NYV LSN YA G+W +V +VR M E LRK+ GCSWI++ ++ FV +R
Sbjct: 798 PEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFL 857
Query: 763 PKTEEIYATLALLGMHV 779
EEI + ++L M +
Sbjct: 858 DGFEEIKSLWSILEMKI 874
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/742 (31%), Positives = 395/742 (53%), Gaps = 25/742 (3%)
Query: 50 QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
Q L + + EA L + + ++ Y +LL+ C+ ++ G+ +HAR G
Sbjct: 52 QFDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARF---G 108
Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
F + +VETKL+ YAKC + A ++F +R +N+F+W+A+IG R +
Sbjct: 109 LFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKL 168
Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
F M +DGV PD+F+ P +L+ C G V G+ +H V+K+G C+ V++S++ +Y K
Sbjct: 169 FRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAK 228
Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSI 289
CG+L+ A K F M R+V+AWNS+++ Y QNG +EEA+ + EM EG+ P V+ +
Sbjct: 229 CGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNIL 288
Query: 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDI 349
+ L D G+ D +++I+ G+ A +F +M +
Sbjct: 289 IGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGV 348
Query: 350 VTWNLLIASYVQSGQ---------------------SDVVVASSIVDMYAKCERIDNAKQ 388
V + I S V + DV+V +S+VDMY+KC ++++A++
Sbjct: 349 VPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARK 408
Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
VF+S+ +DV WN+++ Y G G+A LF +MQ + PNII+WN++I G+++NG
Sbjct: 409 VFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGD 468
Query: 449 MNEAKDMFLQMQSLG-VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507
EA D+F +M+ G VQ N TW +I+G QN +EA+ F++M + P++ TI
Sbjct: 469 EGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTIL 528
Query: 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567
L AC ++ + R IHG ++R +L + +L D YAK G+I ++ +F +K
Sbjct: 529 SLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETK 588
Query: 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627
++ +N++I GY +HG ALALF ++ +GI P+ T ++I+ A G V+EG ++F
Sbjct: 589 DIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVF 648
Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
+ +D+ + P++EH +V L R L+EAL+ I M + I S L+ C +
Sbjct: 649 YSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGD 708
Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
++A + +E+L LEP+N +S YA + + ++ L+K G SWI+
Sbjct: 709 IDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIE 768
Query: 748 IGEELHVFVACDRSHPKTEEIY 769
+ +H F D+S T+ +Y
Sbjct: 769 VRNLIHTFTTGDQSKLCTDVLY 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 246/778 (31%), Positives = 402/778 (51%), Gaps = 85/778 (10%)
Query: 80 EIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLF 139
E + +L+ C +R + G+Q+H+RI K F + ++ KLV Y KC +LD A ++F
Sbjct: 81 EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVF 139
Query: 140 CRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199
+ + F+W +IG G AL + M+ +GV P +LKAC L +
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 199
Query: 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGY 258
G +H ++K+G+ F+ ++L+ MY K DL AR++FDG + + V WNS++ Y
Sbjct: 200 SGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259
Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
+G + E + +F EM + G P ++ S L+A GK+ HA + +
Sbjct: 260 STSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSE 319
Query: 319 V-LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ---------------- 361
+ + +++I Y++ G + AE + +M D+VTWN LI YVQ
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 379
Query: 362 ----------------SGQ--------------------SDVVVASSIVDMYAKCERIDN 385
SG+ S++ V ++++DMY+KC
Sbjct: 380 AGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCY 439
Query: 386 AKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY-----QMQL-EGISPNIISWNSV 439
+ F + +D++ W T++A YA EA LF +M++ E I +I+ +SV
Sbjct: 440 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 499
Query: 440 ILGFL----------RNGQM-----NEAKDMFLQMQSLGVQ---------PNLITWTTLI 475
+ L R G + NE D++ + +++G ++++WT++I
Sbjct: 500 LKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559
Query: 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC 535
S N +EA+ F+ M+ETG+ + + C LSA +++L GR IH YL+R C
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 619
Query: 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595
L I ++VDMYA CG++ AK VFD K L Y +MI+ Y MHG A+ LF +
Sbjct: 620 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 679
Query: 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655
+ + + PD I+F +L ACSHAGL++EG M +++++P EH+ C+V++L R
Sbjct: 680 RHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANC 739
Query: 656 LDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
+ EA + M +P A + +LL+ C +E E+ E ++ LL+LEP NPGN V +SN
Sbjct: 740 VVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNV 799
Query: 716 YAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLA 773
+A GRWN+V +VR MK G+ K+PGCSWI++ ++H F A D+SHP+++EIY L+
Sbjct: 800 FAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLS 857
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 252/833 (30%), Positives = 413/833 (49%), Gaps = 103/833 (12%)
Query: 39 SYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTG 98
S S+ K + I+ K +R + L E R + LLQ C + G
Sbjct: 2 SISSVAKRFAPAIAPYKKSLPLRNSSRFLEETIPRRLSL-------LLQACSNPNLLRQG 54
Query: 99 QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL--RVKNVFSWAAIIGL 156
+Q+HA ++ N + + Y + +++ YA C + ++F RL R ++ W +II
Sbjct: 55 KQVHAFLIVNS--ISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISS 112
Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
R GL +AL + +M GVSPD P ++KAC AL + V +G D
Sbjct: 113 FVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCN 172
Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
FVASSLI Y + G ++ K+FD ++ ++ V WN M+ GY + G + I+ F M +
Sbjct: 173 EFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRM 232
Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
+ + P V+ +LS A+ +D G Q H + V++G++ + + +S+++ YSK G +D
Sbjct: 233 DQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDD 292
Query: 337 AEVVFSRMVERDIVTWNLLIASY----------------VQSG----------------- 363
A +F M D VTWN +I+ Y + SG
Sbjct: 293 ASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSK 352
Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
D+ + S+++D Y KC + A+ +F+ DVV++ +
Sbjct: 353 FENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAM 412
Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV--ILGFL------------------ 444
++ Y G ++ +F + ISPN I+ S+ ++G L
Sbjct: 413 ISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGF 472
Query: 445 ---------------RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL 489
+ G+MN A ++F ++ + ++++W ++I+ Q+ + AI
Sbjct: 473 DNRCNIGCAVIDMYAKCGRMNLAYEIFERLS----KRDIVSWNSMITRCAQSDNPSAAID 528
Query: 490 FFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549
F++M +GI +I+ ALSAC ++ S G+AIHG++I+H L ++L+DMYA
Sbjct: 529 IFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYA 588
Query: 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPDSITFT 608
KCGN+ A VF K + +N++I+ HG ++L LF + +K GI PD ITF
Sbjct: 589 KCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFL 648
Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
I+++C H G V+EG+ F M D+ ++P EH+ CVV+L R G L EA + +MP
Sbjct: 649 EIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPF 708
Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
PDA + G+LL C ELAE S L+ L+P N G YV +SNA+A + W V++V
Sbjct: 709 PPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKV 768
Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781
R +MKE+ ++K PG SWI+I + H+FV+ D +HP++ IY+ L L +RL
Sbjct: 769 RSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRL 821
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 256/822 (31%), Positives = 433/822 (52%), Gaps = 76/822 (9%)
Query: 3 SFTFTTP---PNPK----FSHTKPQKPLKLSQTHLTK-LRESDNSYESLYKS-------Y 47
+FTF+ P P P FS K L+ + T T+ + + + S++ S +
Sbjct: 6 AFTFSLPSIFPFPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWW 65
Query: 48 FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARI 105
+ S + +REAV LT + I P+ Y LL+ +DM G+QIHA +
Sbjct: 66 IDLLRSKVRSNLLREAV--LTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
K G + + V LV Y KC ++F R+ +N SW ++I C E
Sbjct: 124 YKFG-YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182
Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGW---VGFGRAVHGYVLKVGFDGCVFVASS 222
AL F M ++ V P +F L +V+ AC L + G+ VH Y L+ G + F+ ++
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINT 241
Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
L+ MYGK G L ++ + R++V WN+++ QN EA+ EM LEGVEP
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEVVF 341
+++S+L A ++L+ L GK+ HA A+ NG ++ ++ +GS++++ Y + VF
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361
Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVV---------------ASSIVDMYAKCERID-- 384
M +R I WN +IA Y Q+ + ++++ + C R
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421
Query: 385 NAKQVFNSIIL-----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSV 439
+ K+ + ++ RD + NTL+ Y+ LG+ A R+F +M+ ++++WN++
Sbjct: 422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME----DRDLVTWNTM 477
Query: 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
I G++ + +A + +MQ+L + + G ++ S +
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERK--------VSKGASRVS----------------L 513
Query: 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559
KP++ T+ L +C +++L G+ IH Y I+++L + ++LVDMYAKCG + +++
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573
Query: 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619
VFD P K + +N +I Y MHG EA+ L + + +G+ P+ +TF ++ ACSH+G+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633
Query: 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSL 678
V+EGL +F M D+ V+PS +H+ CVV+LL R G + EA +++ MP D + A SL
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL 693
Query: 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738
L N E+ E +++L+QLEP+ +YV L+N Y+++G W++ ++VR MKE+G+R
Sbjct: 694 LGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVR 753
Query: 739 KNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780
K PGCSWI+ G+E+H FVA D SHP++E++ L L +R
Sbjct: 754 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 795
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/680 (33%), Positives = 363/680 (53%), Gaps = 92/680 (13%)
Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
D L +VL+ C + G+ V ++ GF + S L MY CGDL+EA +VF
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
D + + WN ++ ++G +I +F +M GVE + + + + ++L ++
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
G+Q H + +G N +G+S++ FY K ++ A VF M ERD+++WN +I YV
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272
Query: 361 Q------------------------------SGQSDVVVAS------------------- 371
+G +D + S
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332
Query: 372 ---SIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
+++DMY+KC +D+AK VF + R VV + +++A YA G +GEA +LF +M+ EG
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392
Query: 429 ISPNIISWNSVI-----------------------LGF------------LRNGQMNEAK 453
ISP++ + +V+ LGF + G M EA+
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 454 DMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSA 512
+F +M+ ++I+W T+I G ++N NEA+ F +LE P T+ C L A
Sbjct: 453 LVFSEMRV----KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 508
Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
C +++ GR IHGY++R+ + SLVDMYAKCG + A +FD SK+L +
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568
Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
MI+GY MHG EA+ALF ++Q GI+ D I+F ++L ACSH+GLV+EG F M
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 628
Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
+ +++P++EH+ C+V++L+R G+L +A R I MP PDA I G+LL C ++ +LAE
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688
Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
++E + +LEP+N G YV ++N YA + +W +V ++R + ++GLRKNPGCSWI+I +
Sbjct: 689 KVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748
Query: 753 HVFVACDRSHPKTEEIYATL 772
++FVA D S+P+TE I A L
Sbjct: 749 NIFVAGDSSNPETENIEAFL 768
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNN9|PP370_ARATH Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 233/732 (31%), Positives = 396/732 (54%), Gaps = 45/732 (6%)
Query: 82 YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDAL-DVASRLFC 140
+ +L CV D Y G+ +H+ I+K G ++ V LV YAK + A F
Sbjct: 125 FAIVLPLCVRLGDSYNGKSMHSYIIKAG--LEKDTLVGNALVSMYAKFGFIFPDAYTAFD 182
Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG---W 197
+ K+V SW AII + A F M ++ P+ + NVL C ++
Sbjct: 183 GIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIA 242
Query: 198 VGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256
GR +H YV++ + VFV +SL+ Y + G +EEA +F M ++++V+WN +I
Sbjct: 243 CRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIA 302
Query: 257 GYVQNGLNEEAIRVFYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGME 315
GY N +A ++F+ + +G V P V++ SIL A L L GK+ H+ + +
Sbjct: 303 GYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYL 362
Query: 316 L-DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS--------- 365
L D +G+++I+FY++ G A FS M +DI++WN ++ ++ S +
Sbjct: 363 LEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHH 422
Query: 366 --------DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV-------LWNTLLAAYAD 410
D V S++ + I K+V + ++ L N LL AYA
Sbjct: 423 LLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAK 482
Query: 411 LGRSGEASRLFYQMQLEGISP--NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
G A ++F G+S ++S+NS++ G++ +G ++A+ +F +M + +L
Sbjct: 483 CGNVEYAHKIFL-----GLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMST----TDL 533
Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
TW+ ++ ++ C NEAI F+E+ G++P+T TI L C +ASL R HGY
Sbjct: 534 TTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGY 593
Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
+IR L + +L+D+YAKCG++ A VF ++L ++ AM++GYA+HG EA
Sbjct: 594 IIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEA 652
Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
L ++ ++ + I PD + T +L AC HAGL+ +GL+++ + + H +KP+ME + C V+
Sbjct: 653 LMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVD 712
Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
L++R G LD+A + MP +P+A+I G+LL C N +L ++ HLLQ E D+ GN
Sbjct: 713 LIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGN 772
Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
+V +SN YAA +W V ++R++MK+K ++K GCSW+++ + +VFV+ D SHP+ + I
Sbjct: 773 HVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSI 832
Query: 769 YATLALLGMHVR 780
+ + L + ++
Sbjct: 833 FDLVNALYLQMK 844
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/688 (32%), Positives = 368/688 (53%), Gaps = 65/688 (9%)
Query: 100 QIHARILKNGDFFARNE-YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNC 158
Q HARILK+G A+N+ Y+ KL+ Y+ + + A + + ++S++++I
Sbjct: 36 QAHARILKSG---AQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92
Query: 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF 218
+ L +++ F M G+ PD+ VLPN+ K C L G+ +H G D F
Sbjct: 93 KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152
Query: 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278
V S+ MY +CG + +ARKVFD M ++VV ++++ Y + G EE +R+ EM G
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212
Query: 279 VEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-----GMELDNVLGSSIINFYSKVGL 333
+E VS ILS G AV + G D V SS++ VG
Sbjct: 213 IEANIVSWNGILSGFNR-----SGYHKEAVVMFQKIHHLGFCPDQVTVSSVL---PSVG- 263
Query: 334 LEDAEVV-FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392
D+E++ R++ ++ LL D V S+++DMY K + +FN
Sbjct: 264 --DSEMLNMGRLIHGYVIKQGLL---------KDKCVISAMIDMYGKSGHVYGIISLFNQ 312
Query: 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEA 452
+ + + N + + G +A +F + + + N++SW S+I G +NG+ EA
Sbjct: 313 FEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEA 372
Query: 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512
++F +MQ GV+PN + TI L A
Sbjct: 373 LELFREMQVAGVKPNHV-----------------------------------TIPSMLPA 397
Query: 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVY 572
C ++A+L +GR+ HG+ +R L + ++L+DMYAKCG I+ ++ VF++ P+K L +
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457
Query: 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632
N++++G++MHG A E +++F++L + + PD I+FT++L+AC GL +EG + F M
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517
Query: 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAE 692
++ +KP +EH+ C+VNLL R G L EA +I MP +PD+ + G+LL++C N +LAE
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577
Query: 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEEL 752
+E L LEP+NPG YV LSN YAA G W EV +R+ M+ GL+KNPGCSWIQ+ +
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637
Query: 753 HVFVACDRSHPKTEEIYATLALLGMHVR 780
+ +A D+SHP+ ++I + + +R
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMR 665
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 234/764 (30%), Positives = 391/764 (51%), Gaps = 93/764 (12%)
Query: 99 QQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLR-VKNVFSWAAIIGLN 157
++IHA ++ G +++ KL+ Y+ + +F R+ KNV+ W +II
Sbjct: 24 RRIHALVISLG--LDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAF 81
Query: 158 CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV 217
+ GL +AL + +++E VSPD + P+V+KAC L G V+ +L +GF+ +
Sbjct: 82 SKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141
Query: 218 FVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277
FV ++L+DMY + G L AR+VFD M R++V+WNS+I GY +G EEA+ +++E+
Sbjct: 142 FVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNS 201
Query: 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDA 337
+ P +V+S+L A NL + +G+ H A+ +G+ V+ + ++ Y K DA
Sbjct: 202 WIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDA 261
Query: 338 EVVFSRMVERDIVTWNLLIASYVQ----------------SGQSDVVVASSI-------- 373
VF M RD V++N +I Y++ + D++ SS+
Sbjct: 262 RRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLR 321
Query: 374 ---------------------------VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA 406
+D+YAKC + A+ VFNS+ +D V WN++++
Sbjct: 322 DLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIIS 381
Query: 407 AYADLGRSGEASRLFYQMQL-----------------------------------EGISP 431
Y G EA +LF M + GI
Sbjct: 382 GYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICI 441
Query: 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491
++ N++I + + G++ ++ +F M + + +TW T+IS + +
Sbjct: 442 DLSVSNALIDMYAKCGEVGDSLKIFSSMGT----GDTVTWNTVISACVRFGDFATGLQVT 497
Query: 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551
+M ++ + P T L C +A+ R G+ IH L+R I +L++MY+KC
Sbjct: 498 TQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKC 557
Query: 552 GNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611
G + + RVF+ +++ + MI Y M+G +AL F ++++ GI PDS+ F I+
Sbjct: 558 GCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAII 617
Query: 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671
ACSH+GLV+EGL F M + +++ P +EH+ CVV+LLSR + +A I MP PD
Sbjct: 618 YACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPD 677
Query: 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731
A I S+L C S + E AE +S +++L PD+PG + SNAYAA +W++VS +R
Sbjct: 678 ASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKS 737
Query: 732 MKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALL 775
+K+K + KNPG SWI++G+ +HVF + D S P++E IY +L +L
Sbjct: 738 LKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEIL 781
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | ||||||
| 225445374 | 858 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.914 | 0.672 | 0.0 | |
| 297738890 | 1974 | unnamed protein product [Vitis vinifera] | 0.970 | 0.387 | 0.674 | 0.0 | |
| 449464272 | 840 | PREDICTED: pentatricopeptide repeat-cont | 0.991 | 0.929 | 0.562 | 0.0 | |
| 347954480 | 807 | chlororespiratory reduction 21, partial | 0.937 | 0.915 | 0.572 | 0.0 | |
| 297796453 | 829 | pentatricopeptide repeat-containing prot | 0.969 | 0.921 | 0.555 | 0.0 | |
| 15240572 | 830 | pentatricopeptide repeat-containing prot | 0.972 | 0.922 | 0.556 | 0.0 | |
| 347954478 | 794 | chlororespiratory reduction 21, partial | 0.925 | 0.918 | 0.575 | 0.0 | |
| 347954454 | 824 | chlororespiratory reduction 21 [Arabis h | 0.937 | 0.896 | 0.571 | 0.0 | |
| 347954464 | 829 | chlororespiratory reduction 21, partial | 0.955 | 0.908 | 0.568 | 0.0 | |
| 347954462 | 830 | chlororespiratory reduction 21, partial | 0.965 | 0.916 | 0.549 | 0.0 |
| >gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/837 (67%), Positives = 665/837 (79%), Gaps = 52/837 (6%)
Query: 1 MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
MAS TT PNP SH KP+K K + T L KL+E D + SLYKSYFH ISSL K+ +
Sbjct: 1 MASLPITTTPNPHTSHFKPRKSSKFASTRLAKLQEKDENRRSLYKSYFHHISSLCKDGHL 60
Query: 61 REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
+E+V LL+EM+ +FQIGPEIYGELLQGCVY+R ++TGQQIHARILKNGDFFA+NEYVET
Sbjct: 61 QESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVET 120
Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
KLVVFYAKCD +VA RLF RLRV+NVFSWAAI+GL CR+G SE AL+GF+EMQE+GV P
Sbjct: 121 KLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFP 180
Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
DNFVLPNVLKACG+L +G G+ VHGYVLK+GF CVFV+SSL+DMYGKCG LE+ARKVF
Sbjct: 181 DNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVF 240
Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
D M+ +NVV WNSMIVGYVQNGLN+EAI VFY+M +EG+EPTRV+V S LSASANLDAL
Sbjct: 241 DSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 300
Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
EGKQ HA+A++N ++LDN+LGSSIINFYSKVGL+EDAE+VFSRM+E+D+VTWNLLI+SYV
Sbjct: 301 EGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 360
Query: 361 QSGQ----------------------------------------------------SDVV 368
Q Q SDVV
Sbjct: 361 QHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 420
Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
VA+SI+DMYAKCERID+A++VF+S RD+VLWNTLLAAYA +G SGEA +LFYQMQ +
Sbjct: 421 VANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDS 480
Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
+ PN+ISWNSVILGFLRNGQ+NEAKDMF QMQSLG QPNLITWTTLISGL Q+ G EAI
Sbjct: 481 VPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAI 540
Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
LFFQ+M E GI+PS +IT L ACTD+ SL GRAIHG++ RH+ CL P+ TSLVDMY
Sbjct: 541 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMY 600
Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
AKCG+I +AK+VF + SKELP+YNAMIS YA+HG AVEALALFK+LQ++GI+PDSITFT
Sbjct: 601 AKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFT 660
Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
+IL+ACSHAGLVNEGL LF M S H + P MEH+GCVV+LLSRCGNLDEALR+ILTMP
Sbjct: 661 SILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPF 720
Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
PDAHI+GSLL+ C + +E EL EY+S+HL +LEP N GNYVALSNAYAA+GRW EVS +
Sbjct: 721 QPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNM 780
Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
RD+MK +GLRKNPGCSWIQ G +L+VFVA D SHPKTEEIYA LA+L +R + V
Sbjct: 781 RDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAMLAMLLSEMRFMGYV 837
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1151 bits (2978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/817 (67%), Positives = 652/817 (79%), Gaps = 52/817 (6%)
Query: 21 KPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPE 80
K K + T L KL+E D + SLYKSYFH ISSL K+ ++E+V LL+EM+ +FQIGPE
Sbjct: 1116 KSSKFASTRLAKLQEKDENRRSLYKSYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPE 1175
Query: 81 IYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFC 140
IYGELLQGCVY+R ++TGQQIHARILKNGDFFA+NEYVETKLVVFYAKCD +VA RLF
Sbjct: 1176 IYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFH 1235
Query: 141 RLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200
RLRV+NVFSWAAI+GL CR+G SE AL+GF+EMQE+GV PDNFVLPNVLKACG+L +G
Sbjct: 1236 RLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGL 1295
Query: 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQ 260
G+ VHGYVLK+GF CVFV+SSL+DMYGKCG LE+ARKVFD M+ +NVV WNSMIVGYVQ
Sbjct: 1296 GKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQ 1355
Query: 261 NGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
NGLN+EAI VFY+M +EG+EPTRV+V S LSASANLDAL EGKQ HA+A++N ++LDN+L
Sbjct: 1356 NGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNIL 1415
Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ---------------- 364
GSSIINFYSKVGL+EDAE+VFSRM+E+D+VTWNLLI+SYVQ Q
Sbjct: 1416 GSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENL 1475
Query: 365 ------------------------------------SDVVVASSIVDMYAKCERIDNAKQ 388
SDVVVA+SI+DMYAKCERID+A++
Sbjct: 1476 RFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARK 1535
Query: 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448
VF+S RD+VLWNTLLAAYA +G SGEA +LFYQMQ + + PN+ISWNSVILGFLRNGQ
Sbjct: 1536 VFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQ 1595
Query: 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITC 508
+NEAKDMF QMQSLG QPNLITWTTLISGL Q+ G EAILFFQ+M E GI+PS +IT
Sbjct: 1596 VNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITS 1655
Query: 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
L ACTD+ SL GRAIHG++ RH+ CL P+ TSLVDMYAKCG+I +AK+VF + SKE
Sbjct: 1656 VLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKE 1715
Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFV 628
LP+YNAMIS YA+HG AVEALALFK+LQ++GI+PDSITFT+IL+ACSHAGLVNEGL LF
Sbjct: 1716 LPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFA 1775
Query: 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688
M S H + P MEH+GCVV+LLSRCGNLDEALR+ILTMP PDAHI+GSLL+ C + +E
Sbjct: 1776 DMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEI 1835
Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI 748
EL EY+S+HL +LEP N GNYVALSNAYAA+GRW EVS +RD+MK +GLRKNPGCSWIQ
Sbjct: 1836 ELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQT 1895
Query: 749 GEELHVFVACDRSHPKTEEIYATLALLGMHVRLVSKV 785
G +L+VFVA D SHPKTEEIYA LA+L +R + V
Sbjct: 1896 GGKLNVFVAGDGSHPKTEEIYAMLAMLLSEMRFMGYV 1932
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like [Cucumis sativus] gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/834 (56%), Positives = 618/834 (74%), Gaps = 53/834 (6%)
Query: 1 MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
MA+ F P NP +S P+KP S TH + ++ + YKSY + ISSL K+ +
Sbjct: 1 MAALPFPLPTNPIYSLYTPRKP-HYSPTHFASFSQIASNVQISYKSYLNHISSLCKQGHL 59
Query: 61 REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
EA+DL+T+++ + IGP++YGELLQGCVY+R + GQQIH RILKNG+ A+NEY+ET
Sbjct: 60 LEALDLVTDLELEDITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGESIAKNEYIET 119
Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
KLV+FY+KCD ++A+RLF +L+V+N FSWAAI+GL R+G +++AL+GF EM E G+
Sbjct: 120 KLVIFYSKCDESEIANRLFGKLQVQNEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLL 179
Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
DNFV+P KA GAL W+GFG++VH YV+K+G GC++VA+SL+DMYGKCG EEA+KVF
Sbjct: 180 DNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVF 239
Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
D ++ +N+VAWNSMIV + QNGLN EA+ FYEM +EGV PT+V+++S LSASANL +D
Sbjct: 240 DKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVID 299
Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
EGKQ HA+AV++G+EL N+LGSS+INFYSKVGL+EDAE+VFS M+E+D VTWNLL++ YV
Sbjct: 300 EGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYV 359
Query: 361 QSG----------------------------------------------------QSDVV 368
+G +SDV
Sbjct: 360 HNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVA 419
Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
VASSI+DMYAKCE+++ A++VF++ RD+++WNTLLAAYA+ G SGE +LFYQMQLEG
Sbjct: 420 VASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEG 479
Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
+ PN+ISWNSVILG L G++++AKD F++MQSLG+ PNLITWTTLI GL QN G+EA
Sbjct: 480 LPPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPNLITWTTLICGLAQNGLGDEAF 539
Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
L FQ M E GIKP++ +I+ LSAC+ +ASL +GRAIH Y+ RH+L + TP++ SLV+MY
Sbjct: 540 LTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELSVSTPVLCSLVNMY 599
Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
AKCG+I+QAKRVFD+ KELPVYNAMISGYA+HG AVEAL+LF+ L+++ I PD ITFT
Sbjct: 600 AKCGSINQAKRVFDMILKKELPVYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFT 659
Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
+IL+AC HAGLV EGLELF+ M S+H++ EH+GC+V++LSR NLDEALR+IL MP
Sbjct: 660 SILSACGHAGLVREGLELFIDMVSNHKIVAQAEHYGCLVSILSRSHNLDEALRIILGMPF 719
Query: 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728
+PDA I GSLL+ C + + EL E + E LL+LEPDN GNYVALSNAYAA+G W+E S+V
Sbjct: 720 EPDAFIFGSLLAACREHPDFELKERLFERLLKLEPDNSGNYVALSNAYAATGMWDEASKV 779
Query: 729 RDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLV 782
R +MKE+ L K PG S IQIG + HVF A D+SH +T+EIY LALL + ++
Sbjct: 780 RGLMKERSLSKIPGHSLIQIGNKTHVFFAGDKSHSRTKEIYMMLALLRVEMQFT 833
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/795 (57%), Positives = 594/795 (74%), Gaps = 56/795 (7%)
Query: 37 DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY 96
D + L SYFH++SSL K +IREA+ L+TEM RN +IGPEIYGE+LQGCVY+RD+
Sbjct: 4 DQARIPLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLC 63
Query: 97 TGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGL 156
TGQQIHA+ILK GDF+ARNEY+ETKLV+FYAKCDAL++A LF +LRV+NVFSWAAIIG+
Sbjct: 64 TGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGV 123
Query: 157 NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGC 216
CR+GL E AL+GFVEM E+G+ PDNFV+PNV KACGAL W FGR VHGYV K G C
Sbjct: 124 KCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHC 183
Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
VFVASSL DMYGKCG L++ARKVFD + RN VAWN+++VGYVQNG+ EEAIR+ EM
Sbjct: 184 VFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRK 243
Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
EG+EPTRV+V++ LSASAN+ ++EGKQ+HA+A++NG+ELDN+LG+SI+NFY KVGL+E
Sbjct: 244 EGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEY 303
Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSG--------------------------------- 363
AE++F M+E+D+VTWNLLI+ YVQ G
Sbjct: 304 AEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATS 363
Query: 364 -------------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404
+SD+V+AS+ VDMYAKC I NAK+VF+S + +D++LWNTL
Sbjct: 364 TQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTL 423
Query: 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
L+AYAD G SGEA RLFY+MQLE + PN+I+WN +IL LRNGQ+NEAK+MFLQMQS G+
Sbjct: 424 LSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGI 483
Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
PNLI+WTT+++GL QN C EAILF ++M E+G++P+ TIT ALSAC ++ASL GR+
Sbjct: 484 FPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRS 543
Query: 525 IHGYLIR-HDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHG 583
IHGY+IR I TSLVDMYAKCG+I++A+RVF ELP+YNAMIS YA++G
Sbjct: 544 IHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYG 603
Query: 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643
EA+ L+++L+ G+ PD+IT T++L+AC++ VN+ +E+F M S H +KP +EH+
Sbjct: 604 KVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFRDMVSKHGMKPCLEHY 663
Query: 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703
G +V+LL+ G D+ALR++ MP PDA ++ SL +C K ++TEL EY+S+HLL+ EP
Sbjct: 664 GLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEP 723
Query: 704 DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE--LHVFVACDR 760
DN GNYV +SNAYA G W+EV+++R++MK KGL+K PGCSWIQI GEE +HVFVA D+
Sbjct: 724 DNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKGEEEGVHVFVANDK 783
Query: 761 SHPKTEEIYATLALL 775
+H + +EI LALL
Sbjct: 784 THLRNDEIQRMLALL 798
|
Source: Matthiola maderensis Species: Matthiola maderensis Genus: Matthiola Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/831 (55%), Positives = 609/831 (73%), Gaps = 67/831 (8%)
Query: 1 MASFTFTTPP-NPKFS-HTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEK 58
MAS F T P N FS +KP S+ H D + SYFH++SSL K
Sbjct: 1 MASLPFNTIPINLPFSVSSKPS-----SKQH------DDQALNPSSTSYFHRVSSLCKNG 49
Query: 59 QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
+I+EA+ L+TEM RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+A+NEY+
Sbjct: 50 EIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYI 109
Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
ETKLV+FYAKCDALD+A LF +LRV+NVFSWAAIIG+ CR+GL E AL+GFVEM E+ +
Sbjct: 110 ETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEI 169
Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
PDNFV+PNV KACGAL W FGR VHGYV+K G + CVFVASSL DMYGKCG L++ARK
Sbjct: 170 FPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARK 229
Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
VFD + RNVVAWN+++VGYVQNG+NEEAIR+F +M EGVEPTRV+V++ LSASAN+
Sbjct: 230 VFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGG 289
Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
++EGKQ+HA+A++NG+ELDN+LG+S++NFY KVGL+E AE+VF RM+++D+VTWNL+I+
Sbjct: 290 VEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISG 349
Query: 359 YVQSG----------------------------------------------------QSD 366
YVQ G +SD
Sbjct: 350 YVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESD 409
Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
+V+AS+++DMYAKC I +AK+VF+S +D++LWNTLLAAYA+ G SGE RLFY MQL
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQL 469
Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNE 486
EG+ PN+I+WN +IL LRNG+++EAKDMFLQMQS G+ PNLI+WTT+++G+ QN C E
Sbjct: 470 EGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMNGMVQNGCSEE 529
Query: 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLV 545
AILF ++M E+G++P+ +IT ALSAC ++ASL GR+IHGY+IR+ I TSLV
Sbjct: 530 AILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHSSSVSIETSLV 589
Query: 546 DMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
DMYAKCG+I++A++VF ELP+YNAMIS YA++G EA+AL+++L+ G+ PD+I
Sbjct: 590 DMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLKEAIALYRSLEGVGLKPDNI 649
Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665
T TN+L+AC+HAG N+ E+ M S H + P +EH+G +V+LL+ G D+ALR+I
Sbjct: 650 TITNVLSACNHAGDNNQATEIVTEMVSKHGMNPCLEHYGLMVDLLASAGQTDKALRLIEE 709
Query: 666 MPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725
MP PDA +I SL+++C K ++EL +Y+S L++ EPDN GNYV +SNAYA G W+EV
Sbjct: 710 MPYKPDARMIQSLVASCNKQPKSELVDYLSRQLIESEPDNSGNYVTISNAYAVEGSWDEV 769
Query: 726 SQVRDIMKEKGLRKNPGCSWIQI-GEELHVFVACDRSHPKTEEIYATLALL 775
++R+IMK KGL+K PGCSWIQI GE +HVFVA D++H + EI LALL
Sbjct: 770 VKMREIMKAKGLKKKPGCSWIQIKGEGVHVFVANDKTHIRINEIQRILALL 820
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55740, chloroplastic; AltName: Full=Protein CHLORORESPIRATORY REDUCTION 21; Flags: Precursor gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/830 (55%), Positives = 608/830 (73%), Gaps = 64/830 (7%)
Query: 1 MASFTFTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQI 60
MAS F T PN K + KP S H + S +S SYFH++SSL K +I
Sbjct: 1 MASLPFNTIPN-KVPFSVSSKP---SSKHHDEQAHSPSS-----TSYFHRVSSLCKNGEI 51
Query: 61 REAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120
+EA+ L+TEM RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+ARNEY+ET
Sbjct: 52 KEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIET 111
Query: 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180
KLV+FYAKCDAL++A LF +LRV+NVFSWAAIIG+ CR+GL E AL+GFVEM E+ + P
Sbjct: 112 KLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFP 171
Query: 181 DNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVF 240
DNFV+PNV KACGAL W FGR VHGYV+K G + CVFVASSL DMYGKCG L++A KVF
Sbjct: 172 DNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVF 231
Query: 241 DGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD 300
D + RN VAWN+++VGYVQNG NEEAIR+F +M +GVEPTRV+V++ LSASAN+ ++
Sbjct: 232 DEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVE 291
Query: 301 EGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360
EGKQ+HA+A++NGMELDN+LG+S++NFY KVGL+E AE+VF RM E+D+VTWNL+I+ YV
Sbjct: 292 EGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYV 351
Query: 361 QSG----------------------------------------------------QSDVV 368
Q G +SD+V
Sbjct: 352 QQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIV 411
Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
+AS+++DMYAKC I +AK+VF+S + +D++LWNTLLAAYA+ G SGEA RLFY MQLEG
Sbjct: 412 LASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEG 471
Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
+ PN+I+WN +IL LRNGQ++EAKDMFLQMQS G+ PNLI+WTT+++G+ QN C EAI
Sbjct: 472 VPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAI 531
Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDM 547
LF ++M E+G++P+ +IT ALSAC +ASL GR IHGY+IR+ I TSLVDM
Sbjct: 532 LFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDM 591
Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
YAKCG+I++A++VF ELP+ NAMIS YA++G EA+AL+++L+ G+ PD+IT
Sbjct: 592 YAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITI 651
Query: 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667
TN+L+AC+HAG +N+ +E+F + S +KP +EH+G +V+LL+ G ++ALR+I MP
Sbjct: 652 TNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMP 711
Query: 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727
PDA +I SL+++C K +TEL +Y+S LL+ EP+N GNYV +SNAYA G W+EV +
Sbjct: 712 FKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVK 771
Query: 728 VRDIMKEKGLRKNPGCSWIQI-GEE-LHVFVACDRSHPKTEEIYATLALL 775
+R++MK KGL+K PGCSWIQI GEE +HVFVA D++H + EI LALL
Sbjct: 772 MREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMMLALL 821
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/786 (57%), Positives = 590/786 (75%), Gaps = 57/786 (7%)
Query: 46 SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
SYFH++SSL K +IREA+ L+TEM RN +IGPEIYGE+LQGCVY+RD+ TGQQIHA+I
Sbjct: 1 SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 60
Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
LK GDF+ARNEY+ETKLV+FYAKCDAL++A LF +LRV+NVFSWAAIIG+ CR+GL E
Sbjct: 61 LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 120
Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
AL+GFVEM E+G+ PDNFV+PNV KACGAL W FGR VHGYV K G CVFVASSL D
Sbjct: 121 ALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLAD 180
Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
MYGKCG L++ARKVFD + RN VAWN+++VGYVQNG+NEEAIR+ EM EG+EPTRV+
Sbjct: 181 MYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVT 240
Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
V++ LSASAN+ ++EGKQ+HA+A++NG+ELDN+LG+SI+NFY KVGL+E AE++F M+
Sbjct: 241 VSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMI 300
Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
E+D+VTWNLLI+ YVQ G
Sbjct: 301 EKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKE 360
Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
+SD+V+AS+ VDMYAKC I NAK+VF+S + +D++LWNTLL+AYAD G
Sbjct: 361 IQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGL 420
Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
SGEA RLFY+MQLE + PN+I+WN +IL LRNGQ+NEAK+MFLQMQS G+ PNLI+WTT
Sbjct: 421 SGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTT 480
Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-H 532
+++GL QN C EAILF ++M E+ ++P+ TIT ALSAC ++ASL GR+IHGY+IR
Sbjct: 481 MMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLHFGRSIHGYIIRNQ 540
Query: 533 DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
I TSLVDMYAKCG+I++A+RVF ELP+YNAMIS YA++G EA+ L+
Sbjct: 541 QYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLY 600
Query: 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
++L+ G+ PD+IT T++L +C++ VN+ +E+F M S H +KP +EH+G +V+LL+
Sbjct: 601 RSLEDGGVKPDNITITSLL-SCNYGRDVNQAIEVFSDMVSKHGMKPCLEHYGLMVDLLAS 659
Query: 653 CGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712
G D+ALR++ MP PDA ++ SL +C K ++TEL EY+S+HLL+ EPDN GNYV +
Sbjct: 660 AGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPDNSGNYVMI 719
Query: 713 SNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE--LHVFVACDRSHPKTEEIY 769
SNAYA G W+EV+++R++MK KGL+K PGCSWIQI GEE +HVFVA D++H + +EI
Sbjct: 720 SNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKGEEEGVHVFVANDKTHLRNDEIQ 779
Query: 770 ATLALL 775
LALL
Sbjct: 780 RMLALL 785
|
Source: Matthiola sinuata Species: Matthiola sinuata Genus: Matthiola Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/796 (57%), Positives = 597/796 (75%), Gaps = 57/796 (7%)
Query: 46 SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
SYFH++SSL K +IREA+ L+TEM RN +IGPEI+GE+LQGCVY RD+ TGQQIHARI
Sbjct: 29 SYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIFGEILQGCVYXRDLRTGQQIHARI 88
Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
LKNGDF+ARNEY+ETKLV+FYAKCDAL+VA LF +LRV+NVFSWAAIIG+ CR+GL E
Sbjct: 89 LKNGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKCRIGLVEG 148
Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
AL+GFVEM E+G+ PDNFV+PNV KACGAL W FGR VHGYV K G CVFVASSL D
Sbjct: 149 ALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLAD 208
Query: 226 MYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
MYGKCG L++ARKVFD + RNVVAWN+++VGYVQNG+NEEAIR+ +M EGVEPTRV+
Sbjct: 209 MYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVT 268
Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
V++ LSASAN+ ++EGKQ+HA+A++NG+ELDN+LG+SI+NFY KVGL++ AE++F RM+
Sbjct: 269 VSTCLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMI 328
Query: 346 ERDIVTWNLLIASYVQSG------------------------------------------ 363
E+D+VTWNLLI+ YV G
Sbjct: 329 EKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNLKLGKE 388
Query: 364 ----------QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGR 413
+SD+V+AS+ VDMYAKC + +AK+VF+S + +D++LWNTLLAAYA+ G
Sbjct: 389 VQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGL 448
Query: 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTT 473
SGEA RLFY+MQLE + PN+I+WN +IL LRNGQ+NEAK+MFLQMQS G PN+I+WTT
Sbjct: 449 SGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGTFPNMISWTT 508
Query: 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD 533
+++GL QN C EAILF ++M E+G++P+ +IT ALSAC ++ASL GR+IHGY+IR+
Sbjct: 509 MMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVALSACVNLASLHFGRSIHGYIIRNQ 568
Query: 534 L-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALF 592
I TSLVDMYAKCG+I++A+RVF ELP+YNAMIS YA++G EA+AL+
Sbjct: 569 QHSSSASIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAVALY 628
Query: 593 KNLQQK-GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651
++L++ GI PD+IT TN+L+AC+HAG +N+ +E+F M S H +KP +EH+G +V+LL+
Sbjct: 629 RSLEEDVGIKPDNITITNVLSACNHAGDINQAIEIFTDMVSKHGMKPCLEHYGLMVDLLA 688
Query: 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK-SNETELAEYISEHLLQLEPDNPGNYV 710
G ++AL +I MP PDA +I SL+++C K +++EL +Y+S LL+ EP+N GNYV
Sbjct: 689 SAGETEKALSLIEEMPYKPDARMIQSLVASCKKQQHKSELMDYLSSQLLESEPENSGNYV 748
Query: 711 ALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE-LHVFVACDRSHPKTEEI 768
+SNAYA G W+EV ++R++MK KGL+K PGCSWIQ+ GEE +HVFVA D +H + EI
Sbjct: 749 RVSNAYAVEGSWDEVVKMREMMKVKGLKKKPGCSWIQVKGEEGVHVFVANDNTHLRNNEI 808
Query: 769 YATLALLGMHVRLVSK 784
LALL +R SK
Sbjct: 809 RKILALLLYDMRSDSK 824
|
Source: Arabis hirsuta Species: Arabis hirsuta Genus: Arabis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/811 (56%), Positives = 598/811 (73%), Gaps = 58/811 (7%)
Query: 22 PLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEI 81
P+KLS T + D + SYFH++SSL K+ +IREA+ L+TEM RN +IGPEI
Sbjct: 9 PMKLSTTKASN-HHDDEAGNPPSISYFHRVSSLCKKGEIREALGLVTEMGSRNVRIGPEI 67
Query: 82 YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
YGE+LQGCVY+RD+ TGQQIHARILKNGDF+A+NEY+ETKLV+FYAKCDAL+VA LF +
Sbjct: 68 YGEILQGCVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSK 127
Query: 142 LRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
LR +NVFSWAAIIG+ CR+GL E AL+GFVEM E+G+ PDNFV+PNV KACGAL W FG
Sbjct: 128 LRARNVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFG 187
Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
R VHGYV K G CVFVASSL DMYGKCG L++ARKVFD + R VVAWN+++VGYVQN
Sbjct: 188 RGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQN 247
Query: 262 GLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLG 321
G+N+EAIR+ M EG+EPTRV+V++ LSASAN+ ++EGKQ+HA+A++NG+ELDN+LG
Sbjct: 248 GMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILG 307
Query: 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-----------------Q 364
+SI+NFY KVGL+E AE++F RM+E+D+VTWNLLI+ YVQ G
Sbjct: 308 TSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLN 367
Query: 365 SDVVVASSI-----------------------------------VDMYAKCERIDNAKQV 389
D V SS+ V+MYAKC I +AK+V
Sbjct: 368 FDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKV 427
Query: 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449
FNS + +D++LWNTLLAAYA+ G SGEA RLFY+MQLEG+ PN+I+WNSVIL LRNGQ+
Sbjct: 428 FNSTVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRNGQV 487
Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509
NEAKDMFLQMQS G+ PNLI+WTT+++GL QN C EAI++ ++M E+G++ + +IT A
Sbjct: 488 NEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVA 547
Query: 510 LSACTDVASLRNGRAIHGYLIRHD-LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568
LSAC ++ASL GR+IHGY+IR+ I TSLVDMYAKCG+I +A+RVF E
Sbjct: 548 LSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKLYSE 607
Query: 569 LPVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPDSITFTNILNACSHAGLVNEGLELF 627
LP+YNAMIS YA++G EA AL+++L + GI+PD+IT TN+L+AC HAG +N+ + +F
Sbjct: 608 LPLYNAMISAYALYGNVKEATALYRSLDEDVGIEPDNITITNVLSACHHAGDINQAIHIF 667
Query: 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNE 687
M S H +KP +EH+G +V+LL+ G ++ALR+I MP PDA +I SLL++C K ++
Sbjct: 668 TDMVSKHAMKPCLEHYGLMVDLLASAGETEKALRLIEEMPYKPDARMIQSLLASCNKQHK 727
Query: 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQ 747
+EL EY+S HLL+ EP+N GNYV +SN YA G W+EV ++R++MK KGL+K PGCSWIQ
Sbjct: 728 SELVEYLSRHLLESEPENSGNYVTISNVYAVEGSWDEVGKMREMMKVKGLKKKPGCSWIQ 787
Query: 748 I-GEE--LHVFVACDRSHPKTEEIYATLALL 775
I GEE +HVFVA D++H + EI LALL
Sbjct: 788 IKGEEQGVHVFVANDKTHFRNNEIRRILALL 818
|
Source: Draba nemorosa Species: Draba nemorosa Genus: Draba Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/825 (54%), Positives = 604/825 (73%), Gaps = 64/825 (7%)
Query: 6 FTTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVD 65
F T P+ K ++ KP S H D + SYFH++SSL K +I+EA+
Sbjct: 6 FNTIPS-KLPYSVSTKP---SSKH-----HDDQALNPSSTSYFHRVSSLCKNGEIKEALS 56
Query: 66 LLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF 125
L+T+M RN +IGPEIYGE+LQGCVY+RD+ TG+QIHARILKNGDF+A NEY+ETKLV+F
Sbjct: 57 LVTKMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIF 116
Query: 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVL 185
YAKCDAL++A LF +LRV+NVFSWAAIIG+ CR+GL E AL+GFVEM E+ + PDNFV+
Sbjct: 117 YAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVV 176
Query: 186 PNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA 245
PNV KACGAL W FGR VHGYV+K G + CVFVASSL DMYGKCG L++ARKVFD +
Sbjct: 177 PNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPE 236
Query: 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQA 305
RNVVAWN+++VGYVQNG+NEEAIR+ +M +GVEP+RV+V++ LSASAN+ + EGKQ+
Sbjct: 237 RNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQS 296
Query: 306 HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG-- 363
HA+A++NG+ELDN+LG+S++NFY KVGL+E AE++F RM ++D+VTWNLLI+ YVQ G
Sbjct: 297 HAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLV 356
Query: 364 --------------------------------------------------QSDVVVASSI 373
+SD+V+AS
Sbjct: 357 EDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASIT 416
Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
+DMYAKC I +AK+VF+S + +D++LWNTLLAAYA+ G SGEA RLFY+MQLE + PN+
Sbjct: 417 MDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNV 476
Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
I+WN +IL LRNG++NEAK+MFLQMQS G+ PNLI+WTT+++G+ QN C EAILF ++
Sbjct: 477 ITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRK 536
Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDMYAKCG 552
M ++G++P+ +IT ALSA ++ASL GR+IHGY++R+ I TSLVDMYAKCG
Sbjct: 537 MQDSGLRPNAFSITVALSASANLASLHFGRSIHGYIVRNLQHSSSVSIETSLVDMYAKCG 596
Query: 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612
+I++A+RVF ELP+YNAMIS YA++G EA+ L+++L+ G PD+ITFT++L+
Sbjct: 597 DINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAITLYRSLEDMGNKPDNITFTSLLS 656
Query: 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA 672
AC+H G +N+ +E+F M S H VKP +EH+G +V+LL+ G D AL++I MP PDA
Sbjct: 657 ACNHVGDINQAIEIFTDMVSKHGVKPCLEHYGLMVDLLASAGETDRALKLIEEMPYKPDA 716
Query: 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732
+I SL+++C K +++EL EY S HLL+ EP+N GNYV +SNAYA G W+EV ++RD+M
Sbjct: 717 RMIQSLVASCNKQHKSELVEYFSRHLLESEPENSGNYVTISNAYAVEGSWDEVVKMRDMM 776
Query: 733 KEKGLRKNPGCSWIQI-GEE-LHVFVACDRSHPKTEEIYATLALL 775
K KGL KNPGCSWIQI GEE +HVFVA D++H + +EI +ALL
Sbjct: 777 KAKGLTKNPGCSWIQIKGEEGVHVFVANDKTHIRKDEIQRIIALL 821
|
Source: Crucihimalaya wallichii Species: Crucihimalaya wallichii Genus: Crucihimalaya Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | ||||||
| TAIR|locus:2162207 | 830 | CRR21 "chlororespiratory reduc | 0.657 | 0.624 | 0.474 | 7e-125 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.430 | 0.395 | 0.387 | 1.5e-106 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.851 | 0.789 | 0.329 | 1.6e-102 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.868 | 0.820 | 0.332 | 3e-101 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.960 | 0.850 | 0.321 | 4.9e-101 | |
| TAIR|locus:2181201 | 691 | AT5G27110 [Arabidopsis thalian | 0.426 | 0.486 | 0.368 | 5.9e-101 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.804 | 0.616 | 0.347 | 3.9e-99 | |
| TAIR|locus:2089333 | 654 | AT3G16610 "AT3G16610" [Arabido | 0.818 | 0.986 | 0.331 | 2.5e-97 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.569 | 0.421 | 0.317 | 7.1e-97 | |
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.892 | 0.915 | 0.292 | 2.1e-93 |
| TAIR|locus:2162207 CRR21 "chlororespiratory reduction 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
Identities = 255/537 (47%), Positives = 363/537 (67%)
Query: 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRV-----SVTSILSASANLDALDEGKQAHAVAV 310
+G V+ G AI + M L+ + T + V I A D + E +
Sbjct: 287 MGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLI 346
Query: 311 INGMELDNVLGSSIINFYSKVGLLEDAE---VVFSRMVERDIVTWNLLIASYVQ------ 361
I+G ++ +I + ++ LE + V + ++ T NL + VQ
Sbjct: 347 ISGYVQQGLVEDAI--YMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRH 404
Query: 362 SGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF 421
S +SD+V+AS+++DMYAKC I +AK+VF+S + +D++LWNTLLAAYA+ G SGEA RLF
Sbjct: 405 SFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLF 464
Query: 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481
Y MQLEG+ PN+I+WN +IL LRNGQ++EAKDMFLQMQS G+ PNLI+WTT+++G+ QN
Sbjct: 465 YGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQN 524
Query: 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPI 540
C EAILF ++M E+G++P+ +IT ALSAC +ASL GR IHGY+IR+ I
Sbjct: 525 GCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSI 584
Query: 541 VTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600
TSLVDMYAKCG+I++A++VF ELP+ NAMIS YA++G EA+AL+++L+ G+
Sbjct: 585 ETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGL 644
Query: 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEAL 660
PD+IT TN+L+AC+HAG +N+ +E+F + S +KP +EH+G +V+LL+ G ++AL
Sbjct: 645 KPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKAL 704
Query: 661 RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720
R+I MP PDA +I SL+++C K +TEL +Y+S LL+ EP+N GNYV +SNAYA G
Sbjct: 705 RLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEG 764
Query: 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQI-GEE-LHVFVACDRSHPKTEEIYATLALL 775
W+EV ++R++MK KGL+K PGCSWIQI GEE +HVFVA D++H + EI LALL
Sbjct: 765 SWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMMLALL 821
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 134/346 (38%), Positives = 211/346 (60%)
Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET 497
+VI + + G+MN A ++F ++ + ++++W ++I+ Q+ + AI F++M +
Sbjct: 481 AVIDMYAKCGRMNLAYEIFERLS----KRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVS 536
Query: 498 GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557
GI +I+ ALSAC ++ S G+AIHG++I+H L ++L+DMYAKCGN+ A
Sbjct: 537 GICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAA 596
Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPDSITFTNILNACSH 616
VF K + +N++I+ HG ++L LF + +K GI PD ITF I+++C H
Sbjct: 597 MNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCH 656
Query: 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676
G V+EG+ F M D+ ++P EH+ CVV+L R G L EA + +MP PDA + G
Sbjct: 657 VGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWG 716
Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
+LL C ELAE S L+ L+P N G YV +SNA+A + W V++VR +MKE+
Sbjct: 717 TLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKERE 776
Query: 737 LRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL-ALLGMHVRL 781
++K PG SWI+I + H+FV+ D +HP++ IY+ L +LLG +RL
Sbjct: 777 VQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLG-ELRL 821
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 230/699 (32%), Positives = 378/699 (54%)
Query: 82 YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR 141
+ LL+ C+ RD G+ +HAR+++ + + L+ Y+K A +F
Sbjct: 65 FSSLLKSCIRARDFRLGKLVHARLIEFD--IEPDSVLYNSLISLYSKSGDSAKAEDVFET 122
Query: 142 LR---VKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
+R ++V SW+A++ G A+ FVE E G+ P+++ V++AC +V
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182
Query: 199 GFGRAVHGYVLKVG-FDGCVFVASSLIDMYGKC-GDLEEARKVFDGMIARNVVAWNSMIV 256
G GR G+++K G F+ V V SLIDM+ K E A KVFD M NVV W MI
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMIT 242
Query: 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL 316
+Q G EAIR F +M L G E + +++S+ SA A L+ L GKQ H+ A+ +G+ +
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGL-V 301
Query: 317 DNVLGSSIINFYSKV---GLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373
D+V S+++ Y+K G ++D VF RM + +++W LI Y+++ +A+
Sbjct: 302 DDV-ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCN----LATEA 356
Query: 374 VDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
+++++ E I N +++ A +L ++ Q G++ N
Sbjct: 357 INLFS--EMITQGHVEPNHFT------FSSAFKACGNLSDPRVGKQVLGQAFKRGLASNS 408
Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE 493
NSVI F+++ +M +A+ F +SL + NL+++ T + G +N +A E
Sbjct: 409 SVANSVISMFVKSDRMEDAQRAF---ESLS-EKNLVSYNTFLDGTCRNLNFEQAFKLLSE 464
Query: 494 MLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553
+ E + S T LS +V S+R G IH +++ L P+ +L+ MY+KCG+
Sbjct: 465 ITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGS 524
Query: 554 IHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613
I A RVF+ ++ + + +MI+G+A HG A+ L F + ++G+ P+ +T+ IL+A
Sbjct: 525 IDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSA 584
Query: 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
CSH GLV+EG F M+ DH++KP MEH+ C+V+LL R G L +A I TMP D
Sbjct: 585 CSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVL 644
Query: 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733
+ + L C + TEL + + +L+L+P+ P Y+ LSN YA +G+W E +++R MK
Sbjct: 645 VWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMK 704
Query: 734 EKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
E+ L K GCSWI++G+++H F D +HP +IY L
Sbjct: 705 ERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 235/706 (33%), Positives = 393/706 (55%)
Query: 81 IYGELLQGC--VYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138
I +Q C + R + Q+ + ++K+G F R+ YV T L+ FY K +D A +
Sbjct: 148 ILSSFIQACSGLDGRGRWMVFQLQSFLVKSG--FDRDVYVGTLLIDFYLKDGNIDYARLV 205
Query: 139 FCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWV 198
F L K+ +W +I ++G S +L F ++ ED V PD ++L VL AC L ++
Sbjct: 206 FDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFL 265
Query: 199 GFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY 258
G+ +H ++L+ G + + + LID Y KCG + A K+F+GM +N+++W +++ GY
Sbjct: 266 EGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGY 325
Query: 259 VQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDN 318
QN L++EA+ +F M+ G++P + +SIL++ A+L AL G Q HA + + D+
Sbjct: 326 KQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDS 385
Query: 319 VLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378
+ +S+I+ Y+K L DA VF D+V +N +I Y + G +
Sbjct: 386 YVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQ-----------WE 434
Query: 379 KCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS 438
E ++ + + +I ++ + +LL A A L G + ++ M G++ +I + S
Sbjct: 435 LHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFA-GS 493
Query: 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498
++ N KD L + V+ +L+ W ++ +G Q S EA+ F E+ +
Sbjct: 494 ALIDVYSNCYC--LKDSRLVFDEMKVK-DLVIWNSMFAGYVQQSENEEALNLFLELQLSR 550
Query: 499 IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL-CLPTPIVTSLVDMYAKCGNIHQA 557
+P T ++A ++AS++ G+ H L++ L C P I +L+DMYAKCG+ A
Sbjct: 551 ERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPY-ITNALLDMYAKCGSPEDA 609
Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617
+ FD + S+++ +N++IS YA HG +AL + + + +GI+P+ ITF +L+ACSHA
Sbjct: 610 HKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHA 669
Query: 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677
GLV +GL+ F M ++P EH+ C+V+LL R G L++A +I MP P A + S
Sbjct: 670 GLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRS 728
Query: 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737
LLS C K+ ELAE+ +E + +P + G++ LSN YA+ G W E +VR+ MK +G+
Sbjct: 729 LLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGV 788
Query: 738 RKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRLVS 783
K PG SWI I +E+H+F++ D+SH K +IY L L + +R VS
Sbjct: 789 VKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIRGVS 834
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
Identities = 261/811 (32%), Positives = 432/811 (53%)
Query: 3 SFTFTTP---PNPK----FSHTKPQKPLKLSQTHLTK-LRESDNSYESLYKS-------Y 47
+FTF+ P P P FS K L+ + T T+ + + + S++ S +
Sbjct: 6 AFTFSLPSIFPFPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWW 65
Query: 48 FHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYG--ELLQGCVYKRDMYTGQQIHARI 105
+ S + +REAV LT + I P+ Y LL+ +DM G+QIHA +
Sbjct: 66 IDLLRSKVRSNLLREAV--LTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
K G + + V LV Y KC ++F R+ +N SW ++I C E
Sbjct: 124 YKFG-YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182
Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGW---VGFGRAVHGYVLKVGFDGCVFVASS 222
AL F M ++ V P +F L +V+ AC L + G+ VH Y L+ G + F+ ++
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINT 241
Query: 223 LIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
L+ MYGK G L ++ + R++V WN+++ QN EA+ EM LEGVEP
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Query: 283 RVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIINFYSKVGLLEDAEVVF 341
+++S+L A ++L+ L GK+ HA A+ NG ++ ++ +GS++++ Y + VF
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361
Query: 342 SRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW 401
M +R I WN +IA Y Q+ + D + M ++A + NS + VV
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQN-EHDKEALLLFIGME------ESAGLLANSTTMAGVVPA 414
Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461
A++ R EA F + G+ + N+++ + R G+++ A +F +M+
Sbjct: 415 CVRSGAFS---RK-EAIHGFVVKR--GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMED 468
Query: 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEM--LE---------TGIKPSTTTITCAL 510
+L+TW T+I+G + +A+L +M LE +KP++ T+ L
Sbjct: 469 R----DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524
Query: 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570
+C +++L G+ IH Y I+++L + ++LVDMYAKCG + +++VFD P K +
Sbjct: 525 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584
Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
+N +I Y MHG EA+ L + + +G+ P+ +TF ++ ACSH+G+V+EGL +F M
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644
Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCVKSNETE 689
D+ V+PS +H+ CVV+LL R G + EA +++ MP D + A SLL N E
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704
Query: 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIG 749
+ E +++L+QLEP+ +YV L+N Y+++G W++ ++VR MKE+G+RK PGCSWI+ G
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHG 764
Query: 750 EELHVFVACDRSHPKTEEIYATLALLGMHVR 780
+E+H FVA D SHP++E++ L L +R
Sbjct: 765 DEVHKFVAGDSSHPQSEKLSGYLETLWERMR 795
|
|
| TAIR|locus:2181201 AT5G27110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 127/345 (36%), Positives = 199/345 (57%)
Query: 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN--EAILFFQEML 495
S+I + + G+ N A+ +F + Q + +W +IS S GN +A+ + +M+
Sbjct: 349 SLIDLYFKCGEANLAETVFSKTQKDVAE----SWNVMISSYI--SVGNWFKAVEVYDQMV 402
Query: 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555
G+KP T T L AC+ +A+L G+ IH + L ++++L+DMY+KCGN
Sbjct: 403 SVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEK 462
Query: 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
+A R+F+ P K++ + MIS Y HG EAL F +Q+ G+ PD +T +L+AC
Sbjct: 463 EAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACG 522
Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHI 674
HAGL++EGL+ F M S + ++P +EH+ C++++L R G L EA +I P D A +
Sbjct: 523 HAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAEL 582
Query: 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734
+ +L S C E L + I+ L++ PD+ Y+ L N YA+ W+ +VR MKE
Sbjct: 583 LSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKE 642
Query: 735 KGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHV 779
GLRK PGCSWI++ +++ F A DRSH + E +Y LALL H+
Sbjct: 643 MGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENVYECLALLSGHM 687
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 230/662 (34%), Positives = 365/662 (55%)
Query: 113 ARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172
A N YV + LV Y+KC+ ++ A+++F L KN W A+I G S K + F++
Sbjct: 359 ASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMD 418
Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
M+ G + D+F ++L C A + G H ++K +FV ++L+DMY KCG
Sbjct: 419 MKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGA 478
Query: 233 LEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
LE+AR++F+ M R+ V WN++I YVQ+ EA +F M L G+ + S L A
Sbjct: 479 LEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKA 538
Query: 293 SANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352
++ L +GKQ H ++V G++ D GSS+I+ YSK G+++DA VFS + E +V+
Sbjct: 539 CTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSM 598
Query: 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA--YAD 410
N LIA Y Q+ + VV +M + ++ ++ F +I+ + L +
Sbjct: 599 NALIAGYSQNNLEEAVVLFQ--EMLTR--GVNPSEITFATIVEACHKPESLTLGTQFHGQ 654
Query: 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ-MNEAKDMFLQMQSLGVQPNLI 469
+ + G +S Y GIS +LG N + M EA +F ++ S +++
Sbjct: 655 ITKRGFSSEGEYL----GIS---------LLGMYMNSRGMTEACALFSELSS---PKSIV 698
Query: 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529
WT ++SG +QN EA+ F++EM G+ P T L C+ ++SLR GRAIH +
Sbjct: 699 LWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLI 758
Query: 530 --IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV-YNAMISGYAMHGLAV 586
+ HDL T +L+DMYAKCG++ + +VFD + V +N++I+GYA +G A
Sbjct: 759 FHLAHDLDELTS--NTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAE 816
Query: 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646
+AL +F +++Q I PD ITF +L ACSHAG V++G ++F M + ++ ++H C+
Sbjct: 817 DALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACM 876
Query: 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706
V+LL R G L EA I PDA + SLL C + E +E L++LEP N
Sbjct: 877 VDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNS 936
Query: 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTE 766
YV LSN YA+ G W + + +R +M+++G++K PG SWI + + H+F A D+SH +
Sbjct: 937 SAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIG 996
Query: 767 EI 768
+I
Sbjct: 997 KI 998
|
|
| TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 222/669 (33%), Positives = 367/669 (54%)
Query: 85 LLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRL-- 142
LL+ C+ R++ GQ IH +LK + V L YA C+ +++A +F +
Sbjct: 5 LLETCIRSRNLVLGQVIHQHLLKRS-LTLSSSTVLVNLTRLYASCNEVELARHVFDEIPH 63
Query: 143 -RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFG 201
R+ N +W +I +EKAL + +M GV P + P VLKAC L + G
Sbjct: 64 PRI-NPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDG 122
Query: 202 RAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQN 261
+ +H +V F ++V ++L+D Y KCG+LE A KVFD M R++VAWN+MI G+ +
Sbjct: 123 KLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLH 182
Query: 262 GLNEEAIRVFYEMT-LEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVL 320
+ I +F +M ++G+ P ++ + A AL EGK H G D V+
Sbjct: 183 CCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVV 242
Query: 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380
+ I++ Y+K + A VF +++ VTW+ +I YV++ +++ + +++ +
Sbjct: 243 KTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVEN---EMIKEAG--EVFFQM 297
Query: 381 ERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440
DN V I ++L A + DL SG Y ++ G ++ N++I
Sbjct: 298 LVNDNVAMVTPVAI--GLILMGC--ARFGDL--SGGRCVHCYAVKA-GFILDLTVQNTII 350
Query: 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK 500
+ + G + +A F Q +G++ ++I++ +LI+G N E+ F EM +GI+
Sbjct: 351 SFYAKYGSLCDA---FRQFSEIGLK-DVISYNSLITGCVVNCRPEESFRLFHEMRTSGIR 406
Query: 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560
P TT+ L+AC+ +A+L +G + HGY + H + T I +L+DMY KCG + AKRV
Sbjct: 407 PDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRV 466
Query: 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620
FD +++ +N M+ G+ +HGL EAL+LF ++Q+ G++PD +T IL+ACSH+GLV
Sbjct: 467 FDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLV 526
Query: 621 NEGLELFVGMF-SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLL 679
+EG +LF M D V P ++H+ C+ +LL+R G LDEA + MP +PD ++G+LL
Sbjct: 527 DEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLL 586
Query: 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739
S C EL +S+ + L + + V LSN Y+A+ RW + +++R I K++GL K
Sbjct: 587 SACWTYKNAELGNEVSKKMQSLG-ETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLK 645
Query: 740 NPGCSWIQI 748
PG SW+ +
Sbjct: 646 TPGYSWVDV 654
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 7.1e-97, Sum P(2) = 7.1e-97
Identities = 148/466 (31%), Positives = 247/466 (53%)
Query: 311 INGMELDNVLGSSII--NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368
+ +EL + S II NF + +++++ + D W++LI +G+ DVV
Sbjct: 503 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD-TAWDILIRF---AGK-DVV 557
Query: 369 VASSIVDMYAKCERIDNAKQVFNSIILR----DVVLWNTLLAAYADLGRSGEASRLFYQM 424
++++ Y + D A F ++ R D V ++A A L E ++ Q
Sbjct: 558 SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQA 617
Query: 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCG 484
+ G S ++ N+++ + R G++ E+ +L + N I W L+SG Q+
Sbjct: 618 CVSGFSSDLPFQNALVTLYSRCGKIEES---YLAFEQTEAGDN-IAWNALVSGFQQSGNN 673
Query: 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544
EA+ F M GI + T A+ A ++ A+++ G+ +H + + T + +L
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733
Query: 545 VDMYAKCGNIHQAKRVF-DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
+ MYAKCG+I A++ F ++S E+ +NA+I+ Y+ HG EAL F + + P+
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHGFGSEALDSFDQMIHSNVRPN 792
Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663
+T +L+ACSH GLV++G+ F M S++ + P EH+ CVV++L+R G L A I
Sbjct: 793 HVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFI 852
Query: 664 LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723
MP PDA + +LLS CV E+ E+ + HLL+LEP++ YV LSN YA S +W+
Sbjct: 853 QEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWD 912
Query: 724 EVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIY 769
R MKEKG++K PG SWI++ +H F D++HP +EI+
Sbjct: 913 ARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 958
|
|
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 212/724 (29%), Positives = 381/724 (52%)
Query: 51 ISSLSKEKQIREAVDLLT-EMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNG 109
I+SL K REA++ K +F+I Y L+ C R + G++IH IL +
Sbjct: 38 INSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSN 97
Query: 110 DFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIG 169
+ + + ++ Y KC +L A +F + +N+ S+ ++I + G +A+
Sbjct: 98 CKY--DTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRL 155
Query: 170 FVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK 229
+++M ++ + PD F +++KAC + VG G+ +H V+K+ + ++LI MY +
Sbjct: 156 YLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVR 215
Query: 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV-EPTRVSVTS 288
+ +A +VF G+ +++++W+S+I G+ Q G EA+ EM GV P S
Sbjct: 216 FNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS 275
Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348
L A ++L D G Q H + + + + + + G S+ + Y++ G L A VF ++ D
Sbjct: 276 SLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPD 335
Query: 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408
+WN++IA +G +D E + Q+ +S + D + +LL A
Sbjct: 336 TASWNVIIAGLANNGYAD--------------EAVSVFSQMRSSGFIPDAISLRSLLCAQ 381
Query: 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468
+ ++ + G ++ NS++ + + ++F ++ +
Sbjct: 382 TKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRN---NADS 438
Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY 528
++W T+++ Q+ E + F+ ML + +P T+ L C +++SL+ G +H Y
Sbjct: 439 VSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCY 498
Query: 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEA 588
++ L I L+DMYAKCG++ QA+R+FD ++++ ++ +I GYA G EA
Sbjct: 499 SLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEA 558
Query: 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVN 648
L LFK ++ GI+P+ +TF +L ACSH GLV EGL+L+ M ++H + P+ EH CVV+
Sbjct: 559 LILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVD 618
Query: 649 LLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708
LL+R G L+EA R I M +PD + +LLS C LA+ +E++L+++P N
Sbjct: 619 LLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTA 678
Query: 709 YVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEI 768
+V L + +A+SG W + +R MK+ ++K PG SWI+I +++H+F A D HP+ ++I
Sbjct: 679 HVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDI 738
Query: 769 YATL 772
Y L
Sbjct: 739 YTVL 742
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FM64 | PP431_ARATH | No assigned EC number | 0.5566 | 0.9720 | 0.9228 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 788 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-155 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-79 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-67 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-37 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 473 bits (1219), Expect = e-155
Identities = 243/774 (31%), Positives = 417/774 (53%), Gaps = 29/774 (3%)
Query: 6 FTTPPNPKFSHT----KPQKPLKLSQTHLTK-LR--ESDNSYESLYKSYFHQISSLSKEK 58
F P K L H K R S S Q+ +L
Sbjct: 6 FYLNPGKPNLFQLASHKAPNVLPYWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALCSHG 65
Query: 59 QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYV 118
Q+ +A+ LL M+ + + Y L + C +KR + G ++ +R L + +
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR--L 123
Query: 119 ETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178
++ + + L A +F ++ +++FSW ++G + G ++AL + M GV
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 179 SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARK 238
PD + P VL+ CG + + GR VH +V++ GF+ V V ++LI MY KCGD+ AR
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 239 VFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298
VFD M R+ ++WN+MI GY +NG E + +F+ M V+P +++TS++SA L
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIAS 358
G++ H V G +D + +S+I Y +G +AE VFSRM +D V+W +I+
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEAS 418
Y ++G D ++ YA E DN D + ++L+A A LG
Sbjct: 364 YEKNGLPD-----KALETYALME-QDNVSP--------DEITIASVLSACACLGDLDVGV 409
Query: 419 RLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
+L + +G+ ++ N++I + + +++A ++F + + ++I+WT++I+GL
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGL 465
Query: 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPT 538
N+ EA++FF++ML T +KP++ T+ ALSAC + +L G+ IH +++R +
Sbjct: 466 RLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524
Query: 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK 598
+ +L+D+Y +CG ++ A F+ S K++ +N +++GY HG A+ LF + +
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 599 GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658
G++PD +TF ++L ACS +G+V +GLE F M + + P+++H+ CVV+LL R G L E
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643
Query: 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718
A I MP PD + G+LL+ C EL E ++H+ +L+P++ G Y+ L N YA
Sbjct: 644 AYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703
Query: 719 SGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATL 772
+G+W+EV++VR M+E GL +PGCSW+++ ++H F+ D SHP+ +EI L
Sbjct: 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 6e-79
Identities = 142/495 (28%), Positives = 249/495 (50%), Gaps = 22/495 (4%)
Query: 288 SILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER 347
+++ A L ++ K + +G E D + + ++ + K G+L DA +F M ER
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187
Query: 348 DIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAA 407
++ +W +I V +G A +M+ + + R V +L A
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFAL-FREMW----------EDGSDAEPRTFV---VMLRA 233
Query: 408 YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
A LG + +L + G+ + ++I + + G + +A+ +F M +
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289
Query: 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527
+ W ++++G + EA+ + EM ++G+ T + + + +A L + + H
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 528 YLIRHDLCLPTPIV--TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLA 585
LIR P IV T+LVD+Y+K G + A+ VFD P K L +NA+I+GY HG
Sbjct: 350 GLIRTGF--PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407
Query: 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGC 645
+A+ +F+ + +G+ P+ +TF +L+AC ++GL +G E+F M +H++KP H+ C
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467
Query: 646 VVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705
++ LL R G LDEA +I P P ++ +LL+ C EL +E L + P+
Sbjct: 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527
Query: 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKT 765
NYV L N Y +SGR E ++V + +K KGL +P C+WI++ ++ H F + DR HP++
Sbjct: 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQS 587
Query: 766 EEIYATLALLGMHVR 780
EIY L L +
Sbjct: 588 REIYQKLDELMKEIS 602
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 7e-67
Identities = 155/571 (27%), Positives = 265/571 (46%), Gaps = 69/571 (12%)
Query: 10 PNPKFSHTKPQK-PLKLSQTHLTKLRESDNSYESLYKSYFHQISSLSKEKQIREAVDL-- 66
P P+ KP+ +++S++ +L ++ + S QI L + REA++L
Sbjct: 57 PRPRL---KPEPIRIEVSESKDARLDDTQIRKSGV--SLCSQIEKLVACGRHREALELFE 111
Query: 67 LTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126
+ E C F + Y L++ C+ + + + ++ + +G F ++Y+ ++++ +
Sbjct: 112 ILEAGC-PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG--FEPDQYMMNRVLLMH 168
Query: 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLP 186
KC L A RLF + +N+ SW IIG G +A F EM EDG +
Sbjct: 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 187 NVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR 246
+L+A LG G+ +H VLK G G FV+ +LIDMY KCGD+E+AR VFDGM +
Sbjct: 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288
Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306
VAWNSM+ GY +G +EEA+ ++YEM GV + + + ++ + L L+ KQAH
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSD 366
A + G LD V +++++ YSK G +EDA VF RM +++++WN LI
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI---------- 398
Query: 367 VVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQL 426
A Y + GR +A +F +M
Sbjct: 399 ---------------------------------------AGYGNHGRGTKAVEMFERMIA 419
Query: 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLISGLTQNSCGN 485
EG++PN +++ +V+ +G + ++F M ++ ++P + + +I L + +
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479
Query: 486 EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI--VTS 543
EA + KP+ L+AC +L GR L P +
Sbjct: 480 EAYAMIR---RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG---PEKLNNYVV 533
Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNA 574
L+++Y G +A +V + K L ++ A
Sbjct: 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 2e-37
Identities = 83/311 (26%), Positives = 143/311 (45%), Gaps = 34/311 (10%)
Query: 374 VDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEG 428
++ C R A ++F + ++ L+ A L +++ ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 429 ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488
P+ N V+L ++ G + +A+ +F +M + NL +W T+I GL EA
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAF 209
Query: 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548
F+EM E G T L A + S R G+ +H +++ + T + +L+DMY
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
+KCG+I A+ VFD P K +N+M++GYA+HG + EAL L+ ++ G+ D TF+
Sbjct: 270 SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329
Query: 609 NILNACS-----------HAGLVNEGLEL-FVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656
++ S HAGL+ G L V + +V+L S+ G +
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA-------------LVDLYSKWGRM 376
Query: 657 DEALRVILTMP 667
++A V MP
Sbjct: 377 EDARNVFDRMP 387
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-14
Identities = 67/285 (23%), Positives = 135/285 (47%), Gaps = 25/285 (8%)
Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMF 456
D L+ TL++ A G+ +F++M G+ N+ ++ ++I G R GQ+ +A +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 457 LQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML--ETGIKPSTTTITCALSACT 514
M+S V+P+ + + LIS Q+ + A EM I P T+ + AC
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 515 DVASLRNGRA------IHGYLIRHDLCLPTPIV-TSLVDMYAKCGNIHQAKRVFD----- 562
+ + RA IH Y I+ TP V T V+ ++ G+ A ++D
Sbjct: 591 NAGQV--DRAKEVYQMIHEYNIKG-----TPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 563 -ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621
+ P + ++A++ G +A + ++ +++GI ++++++++ ACS+A
Sbjct: 644 GVKPDEVF--FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
+ LEL+ + S +++P++ ++ L L +AL V+ M
Sbjct: 702 KALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 3e-14
Identities = 17/48 (35%), Positives = 36/48 (75%)
Query: 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478
P+++++N++I G+ + G++ EA +F +M+ G++PN+ T++ LI GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 4e-14
Identities = 98/489 (20%), Positives = 197/489 (40%), Gaps = 80/489 (16%)
Query: 45 KSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQI-HA 103
Y + L ++ +I++ +DLL +M+ KR + +I HA
Sbjct: 371 PEYIDAYNRLLRDGRIKDCIDLLEDME--------------------KRGLLDMDKIYHA 410
Query: 104 RILKNGDFFARNEYVETKLVVFYAKCD---ALDVASRLFCRL-RVKNVFSWAAIIGLNCR 159
+ F+ C A+ A R F +L R + ++ ++ +
Sbjct: 411 K--------------------FFKACKKQRAVKEAFR-FAKLIRNPTLSTFNMLMSVCAS 449
Query: 160 VGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV 219
+ AL +QE G+ D + ++ C G V V ++ G + V
Sbjct: 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509
Query: 220 ASSLIDMYGKCGDLEEARKVFDGMIARNV----VAWNSMIVGYVQNGLNEEAIRVFYEMT 275
+LID + G + +A + M ++NV V +N++I Q+G + A V EM
Sbjct: 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 276 LEG--VEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS-----SIINFY 328
E ++P ++V +++ A AN +D K+ V + N+ G+ +N
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKE-----VYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388
S+ G + A ++ M ++ + + D V S++VD+ +D A +
Sbjct: 625 SQKGDWDFALSIYDDMKKKGV--------------KPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 389 VFNSI----ILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444
+ I V +++L+ A ++ +A L+ ++ + P + + N++I
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 445 RNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504
Q+ +A ++ +M+ LG+ PN IT++ L+ + + + + E GIKP+
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790
Query: 505 TITCALSAC 513
C C
Sbjct: 791 MCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 95/407 (23%), Positives = 178/407 (43%), Gaps = 47/407 (11%)
Query: 265 EEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSI 324
+EA R F ++ PT + ++S A+ +D + + G++ D L +++
Sbjct: 423 KEAFR-FAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 325 INFYSKVGLLEDAEVVFSRM----VERDIVTWNLLIASYVQSGQ-SDVVVASSIVDMYAK 379
I+ +K G ++ VF M VE ++ T+ LI ++GQ + A I M +K
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI--MRSK 536
Query: 380 CERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLF---YQMQLEG--ISPNII 434
N K D V++N L++A G+SG R F +M+ E I P+ I
Sbjct: 537 -----NVKP--------DRVVFNALISA---CGQSGAVDRAFDVLAEMKAETHPIDPDHI 580
Query: 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494
+ +++ GQ++ AK+++ + ++ +T ++ +Q + A+ + +M
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
Query: 495 LETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD-----LCLPTPIVTSLVDMYA 549
+ G+KP SA DVA G + I D + L T +SL+ +
Sbjct: 641 KKKGVKPDEVF----FSALVDVAG-HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 550 KCGNIHQAKRVF-DISPSKELP---VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605
N +A ++ DI K P NA+I+ +AL + +++ G+ P++I
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755
Query: 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652
T++ +L A + GL+L D +KP++ C+ L R
Sbjct: 756 TYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616
YN +I GY G EAL LF ++++GI P+ T++ +++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 5e-09
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Query: 572 YNAMISGYAMHGLAVEAL-ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630
Y +IS A G V+A+ +F + G++ + TF +++ C+ AG V + + G+
Sbjct: 475 YTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY-GI 532
Query: 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-----PCDPDAHIIGSLLSTCVKS 685
VKP F +++ + G +D A V+ M P DPD +G+L+ C +
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 686 NETELAEYISEHLLQLE-PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736
+ + A+ + + + + P Y N+ + G W+ + D MK+KG
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSA 292
+VV +N++I GY + G EEA+++F EM G++P + + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
DVV +NTL+ Y G+ EA +LF +M+ GI PN+ +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 6e-07
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513
P+++T+ TLI G + EA+ F EM + GIKP+ T + +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279
V +NS+I GY + G EEA+ +F EM +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467
+++N++I G + G++ EA ++F +M+ G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
+++NS+I G+ + G++ EA ++F +M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGI 600
YN++ISGY G EAL LFK +++KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS 604
YN +I G G EAL LFK ++++GI+PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST 503
+T+ TLI GL + EA+ F+EM E GI+P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
V +NTL+ GR EA LF +M+ GI P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 10/33 (30%), Positives = 25/33 (75%)
Query: 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460
G+ P+++++N++I G R G+++EA ++ +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 216 CVFVASSLIDMYGKCGDLEEARKVFDGMIAR----NVVAWNSMIVGY 258
V ++LID Y K G +EEA K+F+ M R NV ++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 463 GVQPNLITWTTLISGLTQNSCGN--EAILFFQEM 494
G++P+++T+ TLI GL + G EA+ EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRA--GRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 6e-04
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 243 MIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274
+ +VV +N++I G + G +EA+ + EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNV 248
+SLI Y K G LEEA ++F M + V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282
V +N++I G + G EEA+ +F EM G+EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 221 SSLIDMYGKCGDLEEARKVFDGMIARNVV 249
++LID K G +EEA ++F M R +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 323 SIINFYSKVGLLEDAEVVFSRMVER----DIVTWNLLI 356
++I+ Y K G +E+A +F+ M +R ++ T+++LI
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGI 499
+T+ +LISG + EA+ F+EM E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281
+ +N++++ + G + A+ V EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGI 429
V +N+L++ Y G+ EA LF +M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.37 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.37 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.33 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.28 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.25 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.25 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.14 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.14 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.12 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.81 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.29 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.28 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.17 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.17 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.16 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.98 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.93 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.91 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.91 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.89 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.86 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.84 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.84 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.75 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.73 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.7 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.47 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.45 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.43 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.43 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.4 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.23 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.23 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.2 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.19 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.17 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.13 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.09 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.06 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.05 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.01 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.01 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.98 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.94 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.93 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.93 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.91 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.9 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.86 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.83 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.81 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.61 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.52 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.31 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.29 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.28 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.13 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.09 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.04 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.03 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.98 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.79 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.65 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.64 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.6 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.21 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.18 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.15 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.14 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.09 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.99 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.97 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.94 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.93 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.87 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.68 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.62 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.33 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.22 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.09 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.08 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.02 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.91 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.86 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.83 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.82 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.78 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.65 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.62 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.57 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.53 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.44 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.39 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.13 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.03 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.94 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 92.83 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.8 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.62 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.37 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.27 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.17 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.04 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.02 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.78 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.76 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.64 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.1 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.96 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.58 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.43 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.19 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.86 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.82 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.79 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 89.74 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 89.71 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.69 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.62 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.55 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.54 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.47 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.26 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.17 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.02 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.62 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.58 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 88.47 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.19 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.15 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.08 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.89 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.86 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.39 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.13 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.76 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.42 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 86.21 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.89 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.8 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.76 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 85.25 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 85.03 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.85 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.79 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.74 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 84.62 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.46 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.8 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.76 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.34 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 83.21 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.95 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.57 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 81.85 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.83 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.71 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.26 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 81.06 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.91 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 80.85 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 80.83 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-105 Score=915.56 Aligned_cols=722 Identities=32% Similarity=0.592 Sum_probs=703.4
Q ss_pred CCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHh
Q 035503 40 YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119 (788)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (788)
.++...++|.+++++++.|.+++|..+|+.|.+.|++|+..+|..++.+|.+.+.+..|.++|..+++.+ ..++..++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 124 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH--PSLGVRLG 124 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC--CCCCchHH
Confidence 4556668999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred hHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCch
Q 035503 120 TKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVG 199 (788)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 199 (788)
|.|+.+|+++|+++.|.++|++|++||+++||.+|.+|.+.|++++|+++|++|.+.|+.||..||+.++++|+..+++.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCC
Q 035503 200 FGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279 (788)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 279 (788)
.+.+++..+++.|+.+|..++|.||.+|+++|+++.|.++|++|+.+|+++||.||.+|++.|++++|+++|++|...|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHH
Q 035503 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASY 359 (788)
Q Consensus 280 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 359 (788)
.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|+++|++++|.++|++|..+|+++||++|.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877777666
Q ss_pred HHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc----cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhH
Q 035503 360 VQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIIS 435 (788)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 435 (788)
++. |++++|+++|++|. .||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 365 ~~~------------------g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 365 EKN------------------GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred HhC------------------CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 554 58999999999884 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 035503 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD 515 (788)
Q Consensus 436 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 515 (788)
|+.|+.+|+++|++++|.++|++|.+. |..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||..++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 999999999999999999999999765 889999999999999999999999999986 599999999999999999
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 035503 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNL 595 (788)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 595 (788)
.|.++.+.+++..+.+.|..++..+++.|+++|+++|++++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 035503 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHII 675 (788)
Q Consensus 596 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 675 (788)
.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++++++|++.|++++|.+++++|+.+||..+|
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~ 660 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEE
Q 035503 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVF 755 (788)
Q Consensus 676 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (788)
.+|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|...|+|++|.++++.|.++|+++.||+|||++++++|.|
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f 740 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHhcCCccC
Q 035503 756 VACDRSHPKTEEIYATLALLGMHVRLVSKVFC 787 (788)
Q Consensus 756 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 787 (788)
+.||++||+..+||..|+++..+|++.||+++
T Consensus 741 ~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~ 772 (857)
T PLN03077 741 LTDDESHPQIKEINTVLEGFYEKMKASGLAGS 772 (857)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC
Confidence 99999999999999999999999999999975
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-77 Score=683.06 Aligned_cols=577 Identities=26% Similarity=0.399 Sum_probs=552.7
Q ss_pred cCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCch
Q 035503 37 DNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNE 116 (788)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 116 (788)
+..+++++++||.+|++|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.++|.++++.| +.+|.
T Consensus 145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g--~~~~~ 222 (857)
T PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG--FELDV 222 (857)
T ss_pred hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC--CCccc
Confidence 3446788999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccC
Q 035503 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196 (788)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 196 (788)
.+++.|+.+|+++|++++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHH
Q 035503 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276 (788)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 276 (788)
+.+.|.+++..+.+.|+.||..+||.|+.+|+++|++++|.++|++|..+|+++||.+|.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHH
Q 035503 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLI 356 (788)
Q Consensus 277 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 356 (788)
.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|+++|++++|.++|++|.++|+++||++|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 035503 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433 (788)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 433 (788)
.+|+++ |+.++|..+|++|. .||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|.
T Consensus 463 ~~~~~~------------------g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 463 AGLRLN------------------NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHHHHC------------------CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 777655 58899999999986 689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 035503 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSAC 513 (788)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 513 (788)
.+++.|+.+|+++|++++|..+|+.+ .||..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999987 5699999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHhCCCHHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLI-RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-SKELPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
.+.|.+++|.++|+.|. +.+..|+..+|+.++++|++.|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+...
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999999 68999999999999999999999999999999995 69999999999999999999999999
Q ss_pred HHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc
Q 035503 592 FKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641 (788)
Q Consensus 592 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 641 (788)
.+++.+. .| +...|..+.+.|...|++++|.++.+.|.+ .|+.+++.
T Consensus 680 a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~-~g~~k~~g 727 (857)
T PLN03077 680 AQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE-NGLTVDPG 727 (857)
T ss_pred HHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH-cCCCCCCC
Confidence 9998874 55 456677777799999999999999999955 48877653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-75 Score=652.75 Aligned_cols=526 Identities=30% Similarity=0.512 Sum_probs=475.2
Q ss_pred CCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhh
Q 035503 143 RVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVAS 221 (788)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (788)
..++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999998865 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH
Q 035503 222 SLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDE 301 (788)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 301 (788)
.|+.+|+++|+++.|.++|++|.+||+++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888877776666555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcC
Q 035503 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE 381 (788)
Q Consensus 302 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (788)
+.+++..+.+.
T Consensus 243 ~~~l~~~~~~~--------------------------------------------------------------------- 253 (697)
T PLN03081 243 GQQLHCCVLKT--------------------------------------------------------------------- 253 (697)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 55555544444
Q ss_pred ChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 035503 382 RIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQS 461 (788)
Q Consensus 382 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 461 (788)
|+.||..+|+.|+.+|+++|++++|.++|+.|.+
T Consensus 254 ----------------------------------------------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 287 (697)
T PLN03081 254 ----------------------------------------------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287 (697)
T ss_pred ----------------------------------------------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 4555555555555555555555555556655543
Q ss_pred CCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHH
Q 035503 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541 (788)
Q Consensus 462 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 541 (788)
. |..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|..++..++
T Consensus 288 ~----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 288 K----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred C----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 3 666777777777777777777777777777777777777777777777777777777777777777777888889
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 621 (788)
+.|+++|+++|++++|.++|+.|.++|..+||.||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
+|.++|+.|.+.+++.|+..+|++++++|++.|++++|.+++++++..|+..+|++++.+|..+|+++.|+.++++++++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 035503 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781 (788)
Q Consensus 702 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (788)
+|++...|..|+++|.+.|+|++|.++++.|.++|+++.||++|+++++.+|.|++||..||+..+||+.++++..+|++
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccC
Q 035503 782 VSKVFC 787 (788)
Q Consensus 782 ~~~~~~ 787 (788)
.||+++
T Consensus 604 ~gy~~~ 609 (697)
T PLN03081 604 YGYVAE 609 (697)
T ss_pred cCCCCC
Confidence 999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=589.10 Aligned_cols=566 Identities=27% Similarity=0.425 Sum_probs=489.5
Q ss_pred CccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhh
Q 035503 42 SLYKSYFHQISSLSKEKQIREAVDLLTEMKCRN-FQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVET 120 (788)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 120 (788)
.+..+|+++|..+.+.|++++|+++|+.|...+ +.|+..+|+.++.+|++.++++.+.++|..+.+.| +.+|..+++
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g--~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG--FEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCcchHHHH
Confidence 345589999999999999999999999998764 78999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchH
Q 035503 121 KLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200 (788)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 200 (788)
.|+.+|+++|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCC
Q 035503 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280 (788)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 280 (788)
+.+++..+.+.|+.+|..++|.|+++|+++|++++|.++|++|..+|+++||.||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHH
Q 035503 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYV 360 (788)
Q Consensus 281 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 360 (788)
||..||+.++.+|++.|+++.|.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|++|.++
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~------------- 389 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK------------- 389 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999988888888888777654
Q ss_pred HcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 035503 361 QSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440 (788)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 440 (788)
|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 390 ------------------------------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 390 ------------------------------------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred ------------------------------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 55677888888888999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCch
Q 035503 441 LGFLRNGQMNEAKDMFLQMQS-LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519 (788)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 519 (788)
.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|...|++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999964 799999999999999999999999999999887 4789999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-----hhHHH-------HHHHHHhCCC---
Q 035503 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL-----PVYNA-------MISGYAMHGL--- 584 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~-------l~~~~~~~g~--- 584 (788)
+.|..+++.+.+.++ .+...|..++++|++.|++++|.++++.|.+... .+|.. ++.....+.+
T Consensus 511 ~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 511 ELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 999999999988776 5677899999999999999999999998876432 23321 1111111112
Q ss_pred -HHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHH-HHHHHhcHhhcCCCCCcch-HHHHHHHHhhcCChHHHHH
Q 035503 585 -AVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG-LELFVGMFSDHQVKPSMEH-FGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 585 -~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A-~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 661 (788)
+....++..+|.+.|..||......-+... .-++. ..+-+++.-.+|+--.+.. --.++.-+.-+|+...|.+
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~----~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 665 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEENELLPDVDED----EEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIK 665 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchhhccccHH----HHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHH
Confidence 344567888899999999865422111100 00011 1111111112232111110 0123445566889999999
Q ss_pred HHHhC
Q 035503 662 VILTM 666 (788)
Q Consensus 662 ~~~~~ 666 (788)
++.++
T Consensus 666 ~~s~~ 670 (697)
T PLN03081 666 FIALV 670 (697)
T ss_pred HHhhh
Confidence 98877
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-66 Score=576.19 Aligned_cols=534 Identities=16% Similarity=0.190 Sum_probs=472.6
Q ss_pred CCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHH
Q 035503 76 QIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIG 155 (788)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 155 (788)
.++...|..++..|++.|++++|.++++.|.+.+. .+.+...++.++..|.+.|.+++|..+|+.|+.||..+|+.+|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35566788999999999999999999999988872 35677788889999999999999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHH
Q 035503 156 LNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEE 235 (788)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 235 (788)
+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC----CCCCcchHHHHHHHHHHCCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHH
Q 035503 236 ARKVFDGM----IARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL--EGVEPTRVSVTSILSASANLDALDEGKQAHAVA 309 (788)
Q Consensus 236 A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 309 (788)
|.++|++| ..||.++||.+|.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998 357889999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHH
Q 035503 310 VINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQV 389 (788)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (788)
.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv---------------------------------------- 645 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV---------------------------------------- 645 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------------------
Confidence 9999999999999999999999999999999998877655
Q ss_pred HHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChh
Q 035503 390 FNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLI 469 (788)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 469 (788)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 646 -----~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 646 -----KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred -----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
+|+.||.+|++.|++++|.++|++|...|+.||..+|..++.+|++.|+++.|.+++..|.+.|+.|+..+|+.++.++.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
+++++|..+.+.+.. |+. .......+..++|..+|++|++.|+.||..||..++.+++..+..+.+..+++.
T Consensus 801 --~~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 801 --RRFEKACALGEPVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred --HHHHHHhhhhhhhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 245555544332221 110 111112233467999999999999999999999999888889999888888887
Q ss_pred cHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 630 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
|... +..|+..+|++|++++++. .++|..++++|
T Consensus 873 m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 873 LGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred hccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 7433 6677788999999988432 47899999998
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=546.54 Aligned_cols=534 Identities=15% Similarity=0.163 Sum_probs=357.1
Q ss_pred CCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcC-CCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHH
Q 035503 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF-DGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIV 256 (788)
Q Consensus 178 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 256 (788)
..++...|..++..|++.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346677899999999999999999999999999984 5778888899999999999999999999999999999999999
Q ss_pred HHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhH
Q 035503 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336 (788)
Q Consensus 257 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 336 (788)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc------cCChhHHHHHHHHHHH
Q 035503 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII------LRDVVLWNTLLAAYAD 410 (788)
Q Consensus 337 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~ 410 (788)
|.++|++|.+.+. .||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++
T Consensus 526 Al~lf~~M~~~Gv--------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 526 AFGAYGIMRSKNV--------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 9999999977665 3444444444444555555555555555542 2445555555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHH
Q 035503 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 490 (788)
.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC----
Q 035503 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---- 566 (788)
Q Consensus 491 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 566 (788)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.+..|+...|+.++.+|++.|++++|.++|+.|..
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555554432
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHH
Q 035503 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646 (788)
Q Consensus 567 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 646 (788)
||..+|+.++.+|++.|+.++|.+++++|.+.|+.||..+|+.++..|.+ +++++....+.+.. +.+
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~---f~~-------- 818 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS---FDS-------- 818 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh---hhc--------
Confidence 44455555555555555555555555555555555555555555433321 22233222222110 000
Q ss_pred HHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhCCCc
Q 035503 647 VNLLSRCGNLDEALRVILTM---PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ-LEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
+......+..++|..+|++| ...||..+|+.++..+...+..+.+..+++.+.. -.+.+..+|..|++.+ |++
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~ 895 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEY 895 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccC
Confidence 00000112346788888888 5678888888888766677788888777776432 2344577888888876 333
Q ss_pred -HHHHHHHHHHHHCCCccCC
Q 035503 723 -NEVSQVRDIMKEKGLRKNP 741 (788)
Q Consensus 723 -~~A~~~~~~~~~~~~~~~~ 741 (788)
++|..+++.|...|+.+..
T Consensus 896 ~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCCc
Confidence 5899999999998876654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=385.72 Aligned_cols=675 Identities=13% Similarity=0.066 Sum_probs=458.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHH
Q 035503 45 KSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVV 124 (788)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (788)
..+..+...+...|++++|+++++++.+.. +.+...+..+...+...|++++|...++++++.. |.++..+..++.
T Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~ 235 (899)
T TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR---PNNPAVLLALAT 235 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHH
Confidence 345555555555555555555555554432 2333444445555555555555555555555543 344555555555
Q ss_pred HHhccCChHHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc-ccHHHHHHHhcccCCchH
Q 035503 125 FYAKCDALDVASRLFCRLRV--K-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN-FVLPNVLKACGALGWVGF 200 (788)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 200 (788)
.+...|++++|...++.+.. | +...+......+...|++++|+..|+++.+.+ |+. ..+..+...+...|+++.
T Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~ 313 (899)
T TIGR02917 236 ILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQ 313 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHH
Confidence 55555555555555554421 1 11112222223344555666666665555432 221 122233334456667777
Q ss_pred HHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHc
Q 035503 201 GRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277 (788)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 277 (788)
|...++.+++.. +.+...+..+...+.+.|++++|...++.+... +...+..+...+.+.|++++|.++|+++.+.
T Consensus 314 A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 314 AYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777666654 445556666677777777777777777766432 4456667777777777777777777777654
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCC---CchhHHH
Q 035503 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER---DIVTWNL 354 (788)
Q Consensus 278 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 354 (788)
. +.+...+..+...+...|+.++|...+..+.+.... .......++..+.+.|++++|..+++++... ++..|..
T Consensus 393 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 470 (899)
T TIGR02917 393 D-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL 470 (899)
T ss_pred C-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 3 234455566666666777777777777776665422 2334455666677777777777777666432 3344555
Q ss_pred HHHHHHHcC----------------CCchhHHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcCChh
Q 035503 355 LIASYVQSG----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRSG 415 (788)
Q Consensus 355 li~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 415 (788)
+...+...| +.+...+..++..+...|++++|...|+.+.. .+..++..+...+.+.|+.+
T Consensus 471 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH
Confidence 555555444 23344566677777778888888888877652 35567777777888888888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHH
Q 035503 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEML 495 (788)
Q Consensus 416 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (788)
+|..+++++...+ +.+...+..++..|.+.|++++|..+++.+.+. .+.+...|..+..++...|++++|...|+++.
T Consensus 551 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 551 EAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888877653 345566777778888888888888888887654 24467778888888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhH
Q 035503 496 ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVY 572 (788)
Q Consensus 496 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 572 (788)
+.. +.+...+..+..++...|++++|..+++.+.+..+ .+...+..++..+...|++++|.++++.+.. .+...+
T Consensus 629 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 706 (899)
T TIGR02917 629 ALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF 706 (899)
T ss_pred HhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH
Confidence 643 34556677777788888888888888888888776 5677788888888888888888888877654 345567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 652 (788)
..++..+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++++.+. .+.+...+..++..|.+
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 77888888889999999999888775 355567777888888889999999888888753 33456777788888999
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 653 CGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 653 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
.|+.++|.+.|+++ ..+++...++.++..+...|+ ++|+..++++++..|+++..+..++.+|...|++++|..+++
T Consensus 783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999887 234566788888888888888 779999999999999999999999999999999999999999
Q ss_pred HHHHCCC
Q 035503 731 IMKEKGL 737 (788)
Q Consensus 731 ~~~~~~~ 737 (788)
++++.++
T Consensus 862 ~a~~~~~ 868 (899)
T TIGR02917 862 KAVNIAP 868 (899)
T ss_pred HHHhhCC
Confidence 9988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=387.74 Aligned_cols=679 Identities=13% Similarity=0.050 Sum_probs=533.7
Q ss_pred CCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHh
Q 035503 40 YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVE 119 (788)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (788)
.|.+...|..+...+...|++++|...|++....+ +.+..++..++..+...|++++|...++.+.+.. +.++...
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~ 264 (899)
T TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA---PNSPLAH 264 (899)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHH
Confidence 45556678888888889999999999999988765 3456678888888888999999999999888875 4455555
Q ss_pred hHHHHHHhccCChHHHHHHhccCCCCC---cccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccC
Q 035503 120 TKLVVFYAKCDALDVASRLFCRLRVKN---VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196 (788)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 196 (788)
......+...|++++|...|+.+...+ ...+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 566666777888888888887764322 2233444556677788888888888877643 223445666666777788
Q ss_pred CchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHH
Q 035503 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQNGLNEEAIRVFYE 273 (788)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 273 (788)
+++.|.+.+..+.... +.+..++..+...+.+.|++++|...|+++.. .+...|..+...+...|++++|++.|+.
T Consensus 344 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 344 RVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 8888888887777665 45566777777788888888888888877643 2445666677777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCC---Cch
Q 035503 274 MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER---DIV 350 (788)
Q Consensus 274 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 350 (788)
+.+... .+......++..+...|+.+.|..++..+.... +.+..++..+...|...|++++|...|+++.+. +..
T Consensus 423 a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 500 (899)
T TIGR02917 423 AAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP 500 (899)
T ss_pred HHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Confidence 766532 123344455666667777777777777766543 345566777777777777777777777766432 222
Q ss_pred hHHHHHHHHHHcC----------------CCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhHHHHHHHHHHHc
Q 035503 351 TWNLLIASYVQSG----------------QSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADL 411 (788)
Q Consensus 351 ~~~~li~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 411 (788)
.+..+...+...| +.+...+..++..+.+.|+.++|...|+++. ..+...+..++..+...
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC
Confidence 3333333333333 3456678888999999999999999999885 33556788899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHH
Q 035503 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFF 491 (788)
Q Consensus 412 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 491 (788)
|++++|..+++.+.... +.+..+|..+..++.+.|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|
T Consensus 581 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 581 GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998763 5677889999999999999999999999997653 346778899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh
Q 035503 492 QEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KEL 569 (788)
Q Consensus 492 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 569 (788)
+++.+.. +.+..++..+...+...|++++|..+++.+.+..+ .+...+..++..+...|++++|.+.|+.+.. ++.
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 9999753 44577888899999999999999999999999887 6778888999999999999999999997754 555
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
.++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++... .+++...+..++..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWL 813 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 778889999999999999999999998864 456778888888999999999999999999753 23457788899999
Q ss_pred HhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 650 LSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
+...|+ ++|+++++++ .. +.+...+..++.++...|++++|+..++++++.+|.++.++..++.+|.+.|++++|.+
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 999999 8899999987 33 33456788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 035503 728 VRDIMKE 734 (788)
Q Consensus 728 ~~~~~~~ 734 (788)
++++|++
T Consensus 893 ~~~~~~~ 899 (899)
T TIGR02917 893 ELDKLLN 899 (899)
T ss_pred HHHHHhC
Confidence 9999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-28 Score=289.01 Aligned_cols=646 Identities=11% Similarity=0.029 Sum_probs=438.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHH
Q 035503 47 YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126 (788)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (788)
.-..++.+...++.+.|.+.+.++.... +-++..+..++..+...|+.++|.+.++++.+.. |.++.........
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~---P~~~~~~~~~~~~- 105 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA---PDSNAYRSSRTTM- 105 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCChHHHHHHHHH-
Confidence 3345566677788888888888877644 3346677777888888888888888888888876 3443322111000
Q ss_pred hccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHhcccCCchHHHHHH
Q 035503 127 AKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVH 205 (788)
Q Consensus 127 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~ 205 (788)
.+..++......+...+...|++++|+..|+.+.+.+ +|+.. ............|+.++|.+.+
T Consensus 106 --------------~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 106 --------------LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred --------------HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 0011111112223334444555555555555544322 11111 0000111112234555555555
Q ss_pred HHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCC-----------------------cchHHHHHHHHHHCC
Q 035503 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN-----------------------VVAWNSMIVGYVQNG 262 (788)
Q Consensus 206 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~li~~~~~~g 262 (788)
+.+++.. +.+..++..+...+...|+.++|+..|+++.... ...+...+..+-...
T Consensus 171 ~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 171 QRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 5555543 3344445555555555555555555555542211 111222222222223
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHH
Q 035503 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342 (788)
Q Consensus 263 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 342 (788)
....|...+..+......|+... ......+...|++++|...++.+++.. +.+...+..+..+|.+.|++++|+..|+
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34456666665544333333222 233456677899999999999999875 3467788899999999999999999999
Q ss_pred hcCCCCch-----hHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcCCh
Q 035503 343 RMVERDIV-----TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRS 414 (788)
Q Consensus 343 ~~~~~~~~-----~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 414 (788)
+..+.++. .|..++... ...........+.+.|++++|+..|+++.. .+...+..+...+...|++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVN------RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhh------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 98664331 233332210 001223346778899999999999998863 3566788889999999999
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------CChhhHHHHHHHHHhCCCchH
Q 035503 415 GEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ--------PNLITWTTLISGLTQNSCGNE 486 (788)
Q Consensus 415 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~--------~~~~~~~~li~~~~~~g~~~~ 486 (788)
++|++.|+++++.. +.+...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++
T Consensus 402 ~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 402 AAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999863 334556666666664 56789999998876332100 012345667788899999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 035503 487 AILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565 (788)
Q Consensus 487 A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (788)
|++.|++.++. .|+ ...+..+...+...|++++|...++.+++..+ .+...+..++..+...|+.++|+..++.++
T Consensus 480 A~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 480 AAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 99999999984 454 55677788889999999999999999998877 566667777778889999999999999886
Q ss_pred CCC----hh---------hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 566 SKE----LP---------VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 566 ~~~----~~---------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
... .. .+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+++++
T Consensus 557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421 11 123456788999999999999883 244556677788889999999999999999985
Q ss_pred hcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--
Q 035503 633 DHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG-- 707 (788)
Q Consensus 633 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-- 707 (788)
..|+ ...+..++.+|...|+.++|++.++.+. ..| +...+..++.++...|++++|+..++++++..|+++.
T Consensus 632 ---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 708 (1157)
T PRK11447 632 ---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM 708 (1157)
T ss_pred ---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch
Confidence 3455 6778899999999999999999999884 344 4556778888899999999999999999998876553
Q ss_pred ----hHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 708 ----NYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 708 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+..++.++...|++++|...|++.+.
T Consensus 709 ~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 709 ESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566789999999999999999999864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-27 Score=281.25 Aligned_cols=611 Identities=12% Similarity=0.020 Sum_probs=433.8
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 035503 82 YGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVG 161 (788)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 161 (788)
+...+..+...++.+.|.+.+.++.... |.++.++..++..+.+.|+.++|.+.+++..+.+..+-.
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~---p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~---------- 97 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID---PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNA---------- 97 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChH----------
Confidence 3344445556666777777777666664 556666666666666666666666666665432221110
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhh-hhHHHHHhHhcCChHHHHHHH
Q 035503 162 LSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFV-ASSLIDMYGKCGDLEEARKVF 240 (788)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~ 240 (788)
+......+.. ..|+........+.+...|++++|.+.++.+++.. +++... ...+.......|+.++|++.|
T Consensus 98 ----~~~~~~~~~~--~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 98 ----YRSSRTTMLL--STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred ----HHHHHHHHHh--cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 0000001100 12333334455566788999999999999998765 444322 111222233459999999999
Q ss_pred hcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCC----------------CCHH---HHHHHHHHhcCcCC
Q 035503 241 DGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE----------------PTRV---SVTSILSASANLDA 298 (788)
Q Consensus 241 ~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~ 298 (788)
+++... +...+..+...+...|++++|++.++++...... ++.. .+...+..+-....
T Consensus 171 ~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 171 QRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 999653 4557888889999999999999999998754210 0000 11111222222223
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHh
Q 035503 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378 (788)
Q Consensus 299 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~ 378 (788)
.+.+...+.........|... .......+...|++++|+..|++..+.++ .+..++..+..+|.
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P---------------~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANP---------------KDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHH
Confidence 344445554443333233322 23446778899999999999999877655 45668888999999
Q ss_pred hcCChHHHHHHHHhccc--CCh---hHHH------------HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 035503 379 KCERIDNAKQVFNSIIL--RDV---VLWN------------TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441 (788)
Q Consensus 379 ~~~~~~~A~~~~~~~~~--~~~---~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 441 (788)
+.|++++|+..|++... |+. ..|. .....+.+.|++++|+..|++++... +.+...+..+..
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~ 393 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGD 393 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 99999999999998864 221 1121 22446778999999999999999873 345667778899
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCC--------CCHHHHHHHHHHh
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIK--------PSTTTITCALSAC 513 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~ll~~~ 513 (788)
.+...|++++|++.|+++.+.. +.+...+..+...|. .++.++|+.+++.+...... .....+......+
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999997652 234566777777775 46789999998876432100 0112344566678
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALA 590 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 590 (788)
...|++++|...++++++..| .+..++..++..|.+.|++++|...++.+.. .+...+..+...+...|+.++|+.
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 889999999999999999988 6778889999999999999999999997643 344556666667788999999999
Q ss_pred HHHHHHHcCCCCCHh---------HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 035503 591 LFKNLQQKGIDPDSI---------TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
.++++......++.. .+..+...+...|+.++|+.+++. .+++...+..++..+.+.|+.++|++
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 998864432222221 123455678899999999998862 23456677889999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 662 VILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 662 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
.|+++ ...| +...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|.+++++++.....
T Consensus 625 ~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 625 AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 99998 3344 46789999999999999999999999999999999999999999999999999999999999876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-25 Score=251.33 Aligned_cols=642 Identities=10% Similarity=-0.005 Sum_probs=455.4
Q ss_pred cHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHH
Q 035503 46 SYFHQISSL--SKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLV 123 (788)
Q Consensus 46 ~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (788)
++.-+..+. ...|++++|++.|+..++.. |-+..++..|.+.|...|+.++|....++.++.. |.|...+..+.
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La 119 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLA 119 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHH
Confidence 333344433 44599999999999999866 2336788999999999999999999999999986 67787777764
Q ss_pred HHHhccCChHHHHHHhccCC--CC-CcccHHHHHHH--------HHcCCCchHHHHHHHHHHHCCCCCCcccHHHH-HHH
Q 035503 124 VFYAKCDALDVASRLFCRLR--VK-NVFSWAAIIGL--------NCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV-LKA 191 (788)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~ 191 (788)
.. ++.++|..+++++. .| +...+..+... |.+. ++|...++ .......|+..+.... .+.
T Consensus 120 ~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 120 AI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred Hh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHH
Confidence 43 99999999999984 33 33444444444 5555 55555555 3333344455555555 889
Q ss_pred hcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHh-cCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHH
Q 035503 192 CGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGK-CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV 270 (788)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 270 (788)
|...|+++++..++..+.+.+ +.+......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|..+
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999998 5556667778788888 477 8999998876666888999999999999999999999
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChhHHHHHHHhcCCCC
Q 035503 271 FYEMTLEGVE-PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD-NVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348 (788)
Q Consensus 271 ~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 348 (788)
++++...-.. |+..++..++.-+.... ..+..-+.. .+.++ ......++..+.+.++++.+.++.. ..+.
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 341 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA--TLPA 341 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCch--hhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCCc
Confidence 9998765333 66666655544333221 111111111 11111 1223345888999999998877743 2221
Q ss_pred chhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 035503 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQ 425 (788)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 425 (788)
... ..+... .....+...++...+..+-.. +......+.-...+.|+.++|..+|++..
T Consensus 342 ~~~--~~~r~~----------------~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~ 403 (987)
T PRK09782 342 NEM--LEERYA----------------VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRY 403 (987)
T ss_pred chH--HHHHHh----------------hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 110 011100 011224455555555555322 44555555556677888888888888877
Q ss_pred Hc--CCCCchhHHHHHHHHHHhcCC---HHHHHHH----------------------HHHhhh-CCC-CC--ChhhHHHH
Q 035503 426 LE--GISPNIISWNSVILGFLRNGQ---MNEAKDM----------------------FLQMQS-LGV-QP--NLITWTTL 474 (788)
Q Consensus 426 ~~--~~~~~~~~~~~ll~~~~~~g~---~~~A~~~----------------------~~~~~~-~g~-~~--~~~~~~~l 474 (788)
.. ...++......++..|.+.+. ..++..+ +..... .+. ++ +...|..+
T Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L 483 (987)
T PRK09782 404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL 483 (987)
T ss_pred CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence 63 112333344466677766655 2333222 222211 111 33 56777888
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (788)
..++.. +++++|+..+.+.... .|+......+..++...|++++|...++.+....+ ....+..++.++.+.|+.
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~~~a~~~la~all~~Gd~ 558 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM--SNEDLLAAANTAQAAGNG 558 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHCCCH
Confidence 877776 8899999988888764 57765544555556789999999999999766533 344567778899999999
Q ss_pred HHHHHHHhhCCCCChhhHH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcH
Q 035503 555 HQAKRVFDISPSKELPVYN---AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 555 ~~A~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 631 (788)
++|...++.....++...+ .+...+...|++++|+..+++.++. .|+...+..+..++.+.|++++|+..|++++
T Consensus 559 ~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 559 AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999877664433333 3334445569999999999998875 5678888888889999999999999999987
Q ss_pred hhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 632 SDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 632 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.+.|+ ...+..++.++...|+.++|++.++++ ...| +...+..++.++...|++++|+..++++++++|++..+
T Consensus 637 ---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 637 ---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred ---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 45566 566779999999999999999999987 3444 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 709 YVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 709 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
....+++..+..+++.|.+.+++.....+
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999998887766554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-24 Score=240.59 Aligned_cols=584 Identities=11% Similarity=0.035 Sum_probs=383.1
Q ss_pred cCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCC--CCcccHHHHHHHHHcCCCchHHHH
Q 035503 91 YKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV--KNVFSWAAIIGLNCRVGLSEKALI 168 (788)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 168 (788)
..|++++|...++++++.. |.++.++..|...|...|+.++|+..+++... |+...|..++..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d---P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV---PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHH
Confidence 3366667777777776665 44466666666666666666666666655532 2112222222111 55555555
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHH--------hHhcCChHHHHHHH
Q 035503 169 GFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM--------YGKCGDLEEARKVF 240 (788)
Q Consensus 169 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~ 240 (788)
+|+++.. .. +.+..++..+... |.+.+...++++
T Consensus 130 ~ye~l~~-----------------------------------~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-- 171 (987)
T PRK09782 130 TVEELLA-----------------------------------QQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-- 171 (987)
T ss_pred HHHHHHH-----------------------------------hC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--
Confidence 5555554 33 3333344444443 555555555555
Q ss_pred hcCCCCC--cchHHHH-HHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-cCChhHHHHHHHHHHHhCCCC
Q 035503 241 DGMIARN--VVAWNSM-IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN-LDALDEGKQAHAVAVINGMEL 316 (788)
Q Consensus 241 ~~~~~~~--~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~ 316 (788)
.+...++ ....... ...|.+.|++++|++++.++.+.+. .+..-...+..++.. .++ +.+..++.. .+..
T Consensus 172 lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~ 245 (987)
T PRK09782 172 DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFT 245 (987)
T ss_pred HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hccc
Confidence 2222232 3323333 6777777777778888777777652 233334555555555 355 555555332 3335
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHHHhcCC-----CCchhHHHHHHHHHHc-----C----CCc---hhHHHHHHHHHhh
Q 035503 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVE-----RDIVTWNLLIASYVQS-----G----QSD---VVVASSIVDMYAK 379 (788)
Q Consensus 317 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-----~----~~~---~~~~~~l~~~~~~ 379 (788)
+..+...+++.|.+.|+.++|.++++++.. ++..+|--.+.-.... . +.. ......+++.+.+
T Consensus 246 d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (987)
T PRK09782 246 DPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLK 325 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHh
Confidence 667777888888888888888888877743 2222332222211111 0 001 1123445888899
Q ss_pred cCChHHHHHHHHhcccCChhHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 035503 380 CERIDNAKQVFNSIILRDVVLWNTLLAA--YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFL 457 (788)
Q Consensus 380 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 457 (788)
.+.++.++++.. ....+.. ..++. ....+...++...++.|.+.. +-+....-.+.....+.|+.++|..+|+
T Consensus 326 ~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 326 EGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred ccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999998887743 3333332 22222 233467778888888887762 3355566666667789999999999999
Q ss_pred Hhhh--CCCCCChhhHHHHHHHHHhCCC---chHHHHH----------------------HHHHHhC-CC-CC--CHHHH
Q 035503 458 QMQS--LGVQPNLITWTTLISGLTQNSC---GNEAILF----------------------FQEMLET-GI-KP--STTTI 506 (788)
Q Consensus 458 ~~~~--~g~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~ 506 (788)
.... ....++......++..|.+.+. ..++..+ +...... +. ++ +...+
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~ 480 (987)
T PRK09782 401 QRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAW 480 (987)
T ss_pred HhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHH
Confidence 9854 2223344555677888877766 3333333 1111111 12 23 45566
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCC
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGL 584 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 584 (788)
..+..++.. ++.++|...+.......|. ......++..+...|++++|...|+++.. ++...+..++.++.+.|+
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd--~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQPD--AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC
Confidence 666666655 8899999989888887752 33344456666799999999999987654 445567788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 035503 585 AVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663 (788)
Q Consensus 585 ~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (788)
.++|+..+++.++.. |+. ..+..+...+...|++++|+..|++.+ .+.|+...+..++.++.+.|+.++|+..+
T Consensus 558 ~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 558 GAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998864 433 333333444556799999999999997 55688888899999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 664 LTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 664 ~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+++ ...|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|+..+++..+..+
T Consensus 633 ~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 633 RAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 998 34454 567888899999999999999999999999999999999999999999999999999999987663
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-25 Score=215.34 Aligned_cols=442 Identities=16% Similarity=0.185 Sum_probs=338.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 035503 254 MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333 (788)
Q Consensus 254 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 333 (788)
|..-..+.|++.+|.+.-...-..+ ..+..+...+-..+.+..+.+...+.-...++.. +.-..+|..+.+.+-..|+
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhch
Confidence 3444445666666666544433221 1222222222233334444443333322222222 2235567778888888888
Q ss_pred hhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHH---HHHHHHHHH
Q 035503 334 LEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLW---NTLLAAYAD 410 (788)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~ 410 (788)
+++|+.+++.+.+.++ .....|..+..++...|+.+.|...|....+-|+..| +.+....-.
T Consensus 132 ~~~al~~y~~aiel~p---------------~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 132 LQDALALYRAAIELKP---------------KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHHHHhcCc---------------hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence 8888888888876655 3344667777888888888888888877765444332 334445556
Q ss_pred cCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHHhCCCchHHH
Q 035503 411 LGRSGEASRLFYQMQLEGISPN-IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN-LITWTTLISGLTQNSCGNEAI 488 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~ 488 (788)
.|+.++|...+.++++. .|. ...|..|...+..+|+...|+..|++.... .|+ ...|-.|...|...+.+++|+
T Consensus 197 ~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHH
Confidence 78899999988888876 333 567788888899999999999999998765 233 577888999999999999999
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-
Q 035503 489 LFFQEMLETGIKPST-TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS- 566 (788)
Q Consensus 489 ~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 566 (788)
..|.+... ..|+. ..+..+...|...|.++.|+..++++++..| .-+..|+.|+.++-..|++.+|...|+....
T Consensus 273 s~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99998887 45664 4666677778899999999999999999888 6778999999999999999999999987664
Q ss_pred --CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cch
Q 035503 567 --KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEH 642 (788)
Q Consensus 567 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 642 (788)
....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|.+.|++++|+..|++++ .+.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHH
Confidence 3456889999999999999999999999877 5665 4678889999999999999999999987 78898 688
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
|+.++..|...|+.++|+..+.++ ...|. ...+++|+..|...|+..+|+..|+.+++++||.+.+|.+|+..+---.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999888 45565 4588999999999999999999999999999999999999999877666
Q ss_pred CcHH
Q 035503 721 RWNE 724 (788)
Q Consensus 721 ~~~~ 724 (788)
+|.+
T Consensus 505 dw~D 508 (966)
T KOG4626|consen 505 DWTD 508 (966)
T ss_pred cccc
Confidence 6655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-21 Score=202.81 Aligned_cols=668 Identities=12% Similarity=0.043 Sum_probs=472.4
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCCcc---cHHHHHHHhccCC-----------CchhHHHHHHH
Q 035503 43 LYKSYFHQISSLSKEKQIREAVDLLTEMKCRNF----QIGPE---IYGELLQGCVYKR-----------DMYTGQQIHAR 104 (788)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~---~~~~ll~~~~~~~-----------~~~~a~~~~~~ 104 (788)
....|-.....|...|..++.+.+++.-....- .+... .+..+..-++..+ -+..|...|..
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 344799999999999999999998876551110 11111 1222222221221 12334444444
Q ss_pred HHHhCCCCCCchhHhhHHHHHHhccCC--hHHHHHHhccCCCCCcc-cHHHHHHHH--HcCCCchHHHHHHHHHHHCC--
Q 035503 105 ILKNGDFFARNEYVETKLVVFYAKCDA--LDVASRLFCRLRVKNVF-SWAAIIGLN--CRVGLSEKALIGFVEMQEDG-- 177 (788)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~~-- 177 (788)
+-+.. ...+..++..-+ .|...|+ ++.|...|..+...+.. ...-+..++ ...|++..|+.+|.......
T Consensus 120 A~ki~--m~~~~~l~~~~~-~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 120 ADKID--MYEDSHLLVQRG-FLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHHhh--ccCcchhhhhhh-hhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 44333 222222221111 1222333 58888888776432221 122233343 45689999999999976543
Q ss_pred CCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhc---CChHHHHHHHhcC---CCCCcchH
Q 035503 178 VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKC---GDLEEARKVFDGM---IARNVVAW 251 (788)
Q Consensus 178 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~---~~~~~~~~ 251 (788)
..||+.. .+-.++.+.++.+.|+..|..++..+ |.++.++-.|.-.-... ..+..+...+... ...|++..
T Consensus 197 ~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 197 CKADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred cCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 3455432 23344568999999999999999887 34455444443333333 3355566666555 33488999
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 035503 252 NSMIVGYVQNGLNEEAIRVFYEMTLEGV--EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329 (788)
Q Consensus 252 ~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (788)
+.|...|.-.|+++.++.+...+...-. ..-...|..+.+++-..|+++.|...|....+.....-...+..|..+|+
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 9999999999999999999999987531 12345688899999999999999999998887754443455667899999
Q ss_pred hcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcC----ChHHHHHHHHhcccC---ChhHHH
Q 035503 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCE----RIDNAKQVFNSIILR---DVVLWN 402 (788)
Q Consensus 330 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~ 402 (788)
+.|+++.+...|+++....+ .+..+...|...|...+ ..+.|..++.+...+ |...|-
T Consensus 354 ~~~dle~s~~~fEkv~k~~p---------------~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLP---------------NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCc---------------chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 99999999999999876555 23334445555555443 567788888777644 556676
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH----HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCh------h
Q 035503 403 TLLAAYADLGRSGEASRLFYQMQ----LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL---GVQPNL------I 469 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~------~ 469 (788)
.+...+... +...++..|..+. ..+-.+.....|.+...+...|++++|...|+..... -..++. .
T Consensus 419 ~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 666666544 4444477777654 3455678889999999999999999999999987543 122222 2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
+-..+..++-..++++.|.+.|..+.+. .|+.. .+..++......+...+|...+..++..+- .++.++..+++.|
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLH 574 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHH
Confidence 3334566677788999999999999984 56654 444454444456788999999999998776 7888999999999
Q ss_pred HHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHH------------hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 549 AKCGNIHQAKRVFDISPS-----KELPVYNAMISGYA------------MHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
.+..++..|.+-|+.+.+ +|..+.-+|++.|. ..+..++|+++|.+.+... +-|...-+.+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchh
Confidence 999999999886654432 46666666666554 2356778999999988753 33677778888
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM----PCDPDAHIIGSLLSTCVKSNE 687 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~ 687 (788)
-.++..|++.+|..+|..+.+.. .....+|..++++|..+|++-.|+++|+.+ ....+..+.+.|++++...|.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 88999999999999999997642 345678889999999999999999999887 234678899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC-------------------CCcHHHHHHHHHHHHCCCc
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAAS-------------------GRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~ 738 (788)
+.+|...+.+++...|.++...++++.+..+. +..++|.++|+.+...+-+
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999988887664 3556788888888877654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=210.15 Aligned_cols=360 Identities=16% Similarity=0.176 Sum_probs=316.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHH-HHHH
Q 035503 367 VVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNS-VILG 442 (788)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~ 442 (788)
...|..+...+...|++++|+..++.+.+. .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 447888999999999999999999988743 4678999999999999999999999999875 576655444 4444
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCchHH
Q 035503 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST-TTITCALSACTDVASLRN 521 (788)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 521 (788)
....|+.++|...|.+..+.. +.-.+.|+.|...+..+|+...|++.|++..+ +.|+. ..|..+...|...+.++.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 556899999999998886552 22467899999999999999999999999987 56764 588889999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE---LPVYNAMISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
|...+.++....| ....++..++-.|..+|.+|.|+..|++..+.+ +.+|+.|..++...|+..+|...|.+.+..
T Consensus 271 Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999999999888 777888899999999999999999999877633 358999999999999999999999998885
Q ss_pred CCCCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HH
Q 035503 599 GIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HI 674 (788)
Q Consensus 599 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~ 674 (788)
.|+ +...+.|...+...|.+++|..+|+... .+.|. ...++.|+..|.++|++++|+..++++ ..+|.. ..
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 454 5778889999999999999999999886 66787 567889999999999999999999998 677775 68
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+++++..|...|+.+.|+..|.++++.+|..++++.+|+.+|..+|+..+|++-|+..++..+
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999999999988664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-21 Score=200.16 Aligned_cols=650 Identities=12% Similarity=0.063 Sum_probs=457.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCC----CCCch-hHhhHHHHHHhcc-------
Q 035503 62 EAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF----FARNE-YVETKLVVFYAKC------- 129 (788)
Q Consensus 62 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~-~~~~~l~~~~~~~------- 129 (788)
+|-+++.-+...+ ..-.+|..+...|+++|..++.+.+++........ +..+. ..++.|...|+..
T Consensus 26 D~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445554444443 23357999999999999999999999887622100 11111 1233333333222
Q ss_pred ----CChHHHHHHhccCCCCCcccHHHH---HHHHHcCCC--chHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchH
Q 035503 130 ----DALDVASRLFCRLRVKNVFSWAAI---IGLNCRVGL--SEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGF 200 (788)
Q Consensus 130 ----g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 200 (788)
.-...|..+|+....-+...+..+ -..|...|+ .+.|...|....+.. ++|...+..-.......+++..
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~ 182 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRG 182 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHH
Confidence 123344455544332222222221 223444444 488999998887652 3343333333333357889999
Q ss_pred HHHHHHHHHHHc--CCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHH---HHC---CChhHHHHHHH
Q 035503 201 GRAVHGYVLKVG--FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGY---VQN---GLNEEAIRVFY 272 (788)
Q Consensus 201 a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~---g~~~~a~~~~~ 272 (788)
|..+|..++... .++|+. -.+...+.+.|+.+.|+..|.+..+-|+..-++++... ... ..+..++.++.
T Consensus 183 al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~ 260 (1018)
T KOG2002|consen 183 ALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQ 260 (1018)
T ss_pred HHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 999999977665 345543 34456778999999999999999776655444443321 122 23455666665
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChhHHHHHHHhcCCCCch
Q 035503 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMEL--DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIV 350 (788)
Q Consensus 273 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 350 (788)
..-... .-|+...+.|.+-+...|+++.+..+...+....... -...|-.+..+|-..|++++|...|-+..+.+.
T Consensus 261 ~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~- 338 (1018)
T KOG2002|consen 261 RAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN- 338 (1018)
T ss_pred HHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-
Confidence 554432 3477778889999999999999999999988875322 233577889999999999999999988876554
Q ss_pred hHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcC----ChhHHHHHHHH
Q 035503 351 TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLG----RSGEASRLFYQ 423 (788)
Q Consensus 351 ~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g----~~~~a~~~~~~ 423 (788)
......+..|+.+|.+.|+++.+...|+.+.. .+..+...+...|...+ ..+.|..++.+
T Consensus 339 -------------d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 339 -------------DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred -------------CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 12233566789999999999999999999863 34566777777777765 56778888887
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhC--
Q 035503 424 MQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM----QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-- 497 (788)
Q Consensus 424 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 497 (788)
..+.- +.|...|..+...+....-+ .++.+|..+ ...+..+.+...|.+...+...|++++|...|+.....
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 77663 55777787777666655444 447777654 45566678888999999999999999999999998764
Q ss_pred -CCCCCH-----H-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---C
Q 035503 498 -GIKPST-----T-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---K 567 (788)
Q Consensus 498 -~~~p~~-----~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 567 (788)
...++. . +--.+.......++++.|.+.|..+++..| .-...|..++-+....+...+|...++.+.. .
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 123333 1 223345556667899999999999999887 5566666666555566889999999986654 6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHhhc------------cCcHHHHHHHHHhcHhhc
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSH------------AGLVNEGLELFVGMFSDH 634 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~------------~g~~~~A~~~~~~~~~~~ 634 (788)
++..|.-++..+.+...+..|.+-|......- ..+|..+...|.+.|.+ .+..+.|+++|.++++
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-- 640 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-- 640 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--
Confidence 77788889989999999999998777765532 23577777777775543 2456677888877763
Q ss_pred CCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchH
Q 035503 635 QVKP-SMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE--PDNPGNY 709 (788)
Q Consensus 635 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 709 (788)
..| +...-+.++-.+...|++.+|..+|.+.. ......+|.+++..|..+|++-.|+++|+..++.. -+++.+.
T Consensus 641 -~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 641 -NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred -cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 334 35555688999999999999999999983 22355689999999999999999999999998853 3478899
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..|+.++++.|++.+|.+.+...+...+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888776554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-20 Score=203.94 Aligned_cols=426 Identities=14% Similarity=0.045 Sum_probs=255.3
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFY 328 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (788)
..+......+.+.|++++|+..|++.+. +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3566777788889999999999998876 45777777777777777888888888777777664 23445566677777
Q ss_pred HhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHH
Q 035503 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408 (788)
Q Consensus 329 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (788)
...|++++|+.-|..+...+. .+......++..+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~----------------------------- 240 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG---------------FRNEQSAQAVERLLK----------------------------- 240 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC---------------CccHHHHHHHHHHHH-----------------------------
Confidence 777777777666544322111 000000011110000
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhhHHHHHHH---HHhCCCc
Q 035503 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN-LITWTTLISG---LTQNSCG 484 (788)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~ 484 (788)
..+........... +++...+..+ ..|...........-+....+. .+. ...+..+... ....+++
T Consensus 241 ------~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y 310 (615)
T TIGR00990 241 ------KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESY 310 (615)
T ss_pred ------HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhH
Confidence 11111111111111 1111111111 1111111111111111111000 000 0111111111 1223566
Q ss_pred hHHHHHHHHHHhCC-CCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHh
Q 035503 485 NEAILFFQEMLETG-IKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562 (788)
Q Consensus 485 ~~A~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (788)
++|.+.|++....+ ..|+ ...+..+...+...|++++|...++.+++..| .....+..++.++...|++++|+..|+
T Consensus 311 ~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777777766543 2232 23455555556667777777777777776665 445566677777777777777777776
Q ss_pred hCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 563 ISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 563 ~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
.... .+...|..++..+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|+++++. .|+
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~ 465 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPE 465 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC
Confidence 5443 345677777778888888888888888877653 224555666677778888888888888877642 344
Q ss_pred -cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 640 -MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-------H-IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 640 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
...+..++.++...|++++|++.|+++ ...|+. . .++..+..+...|++++|+..++++++++|++..++
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 567777888888888888888888776 233321 1 111122223446999999999999999999998899
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..++.+|...|++++|..+|++..+..
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999987654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-16 Score=153.47 Aligned_cols=495 Identities=12% Similarity=0.071 Sum_probs=358.7
Q ss_pred ccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHHCCChhHHHHH
Q 035503 194 ALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI---ARNVVAWNSMIVGYVQNGLNEEAIRV 270 (788)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~ 270 (788)
...+.+.|+-++....+.- +.+...| -+|.+..-++.|..+++... ..+...|-+-...=-.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 4444555555555555442 3333333 33455555666666665552 23555555544444556666666655
Q ss_pred HHHH----HHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChhHHHHHHHhc
Q 035503 271 FYEM----TLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELD--NVLGSSIINFYSKVGLLEDAEVVFSRM 344 (788)
Q Consensus 271 ~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 344 (788)
+++- ...|+..+...|..=...|-..|..-....+...++..|++.. ..+|..-.+.|.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 5443 3346666666666666666666666666666666666554432 234444445555555555555544443
Q ss_pred CCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 035503 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQM 424 (788)
Q Consensus 345 ~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 424 (788)
.+-.+ .+...|......--..|..++...+|+++
T Consensus 543 lqvfp----------------------------------------------~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 543 LQVFP----------------------------------------------CKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred Hhhcc----------------------------------------------chhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33222 24455666666666678888888888888
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH
Q 035503 425 QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504 (788)
Q Consensus 425 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (788)
... ++-....|......+-..|++..|..++....+.... +...|-+-+.......++++|..+|.+... ..|+..
T Consensus 577 v~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeR 652 (913)
T KOG0495|consen 577 VEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTER 652 (913)
T ss_pred HHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcch
Confidence 877 3344455566666777789999999999888665322 677888888888899999999999988876 467777
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 035503 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAM 581 (788)
Q Consensus 505 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 581 (788)
.|.--+..-...+..++|.++++..++.-+ .-..+|..+++.+.+.++++.|...|..-.+ ..++.|-.|...--+
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 777777777778889999999988888776 5677888999999999999999999986655 345689999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
.|..-.|..++++..-++ +-+...|...+..-.+.|..+.|..+..+++++ .+.+...+..-|.+..+.++-..+.+
T Consensus 732 ~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHH
Confidence 999999999999988775 447788888999999999999999999888763 44556777788888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCC
Q 035503 662 VILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741 (788)
Q Consensus 662 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 741 (788)
.++++. .|+.+..+++..+....+++.|+.-|+++++.+|++..+|..+...+...|.-++-.+++++..... +..
T Consensus 809 ALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~h 884 (913)
T KOG0495|consen 809 ALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTH 884 (913)
T ss_pred HHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCC
Confidence 888775 4667788888999999999999999999999999999999999999999999999999999887654 456
Q ss_pred ceeEEEECCe
Q 035503 742 GCSWIQIGEE 751 (788)
Q Consensus 742 ~~~~~~~~~~ 751 (788)
|..|..+..+
T Consensus 885 G~~W~avSK~ 894 (913)
T KOG0495|consen 885 GELWQAVSKD 894 (913)
T ss_pred CcHHHHHhhh
Confidence 7788766543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-18 Score=188.41 Aligned_cols=427 Identities=11% Similarity=0.014 Sum_probs=266.9
Q ss_pred hhhHHHHHhHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 035503 219 VASSLIDMYGKCGDLEEARKVFDGMI--ARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296 (788)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 296 (788)
.+......+.+.|++++|+..|++.+ .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 45667888999999999999999984 4677789999999999999999999999998763 33567888899999999
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHH
Q 035503 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376 (788)
Q Consensus 297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~ 376 (788)
|++++|...+..+...+...+.... .++..+........+...++.-... . .....+...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~~~-~------------------~~~~~~~~~ 267 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKPEN-L------------------PSVTFVGNY 267 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC-C------------------CCHHHHHHH
Confidence 9999999888766555322222211 1111111111112222222221110 0 011111111
Q ss_pred HhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-hHHHHHHHH---HHhcCCHHHH
Q 035503 377 YAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-ISWNSVILG---FLRNGQMNEA 452 (788)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~---~~~~g~~~~A 452 (788)
+ ..........-+....+ ..++. ..+..+... ....+++++|
T Consensus 268 ~--------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 268 L--------------------------------QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred H--------------------------------HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHH
Confidence 1 00001111110110000 00100 001111100 1223566677
Q ss_pred HHHHHHhhhCC-CCC-ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHH
Q 035503 453 KDMFLQMQSLG-VQP-NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYL 529 (788)
Q Consensus 453 ~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 529 (788)
...|+...+.+ ..| ....|..+...+...|++++|+..|++.++. .|+ ...+..+...+...|++++|...++.+
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777665543 112 3445666666677777777777777777663 344 445666666677777777777777777
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH
Q 035503 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606 (788)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 606 (788)
++..+ .+..++..++.++...|++++|+..|+.... .+...|..+..++.+.|++++|+..|++.+... +.+...
T Consensus 392 l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~ 469 (615)
T TIGR00990 392 LKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDV 469 (615)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHH
Confidence 77665 5566777778888888888888888876544 334567777888888888888888888877642 334567
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-chH-------HHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-EHF-------GCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIG 676 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~-------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 676 (788)
+..+..++...|++++|+..|++++. +.|+. ..+ ......+...|++++|.++++++ ...|+. ..+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 77777788888888888888888763 33431 111 11222334468899999888886 444544 4678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.++..+...|++++|+..+++++++.+....
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 8888899999999999999999988776433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-18 Score=190.01 Aligned_cols=325 Identities=11% Similarity=0.049 Sum_probs=149.1
Q ss_pred HHHHHhhcCChHHHHHHHHhcc---cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 035503 373 IVDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449 (788)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (788)
++..+.+.|++++|..+++... ..+...+..++.+....|++++|+..++++.... +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 3444444555555555555443 1223334444444445555555555555555441 22233444444555555555
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 035503 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529 (788)
Q Consensus 450 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 529 (788)
++|...|+++... -+.+...+..+...+...|++++|...++++... .|+.......+..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555433 1123344445555555555555555555554432 222221111122344455555555555555
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCC
Q 035503 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVE----ALALFKNLQQKGIDP 602 (788)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p 602 (788)
++..+..+......++..+...|++++|+..++.... .+...+..+...+...|++++ |+..|++..+.. +.
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 4443323333333344455555555555555544332 223344445555555555543 455555554432 11
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHH-HHHHH
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDAHI-IGSLL 679 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~ 679 (788)
+...+..+...+...|++++|+..++++.. ..|+ ...+..++.+|.+.|++++|++.++++. ..|+... +..++
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 233444444455555555555555555442 2233 2333345555555555555555555441 2333222 22233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.++...|+.++|+..|+++++.+|++
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 44445555555555555555555553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=189.75 Aligned_cols=304 Identities=14% Similarity=0.084 Sum_probs=204.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHHhC
Q 035503 405 LAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN---LITWTTLISGLTQN 481 (788)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 481 (788)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777777777777653 23445666777777777777777777777755422111 23456666777777
Q ss_pred CCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 035503 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561 (788)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (788)
|++++|..+|+++.+.. +++..++..++..+...|++++|...++.+.+.++.+....
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 77777777777776532 23445555566666666666666666666655443221100
Q ss_pred hhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC--
Q 035503 562 DISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-- 639 (788)
Q Consensus 562 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-- 639 (788)
....+..++..+...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~ 248 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYL 248 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhH
Confidence 00124456666777777778888777776643 223455666667777888888888888877642 333
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
...+..++.+|.+.|++++|...++++ ...|+...+..++..+...|++++|+..++++++..|++. .+..+...+..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~ 327 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhh
Confidence 345667788888888888888888876 3456666667888889999999999999999999999966 44444544443
Q ss_pred ---CCCcHHHHHHHHHHHHCCCccCCc
Q 035503 719 ---SGRWNEVSQVRDIMKEKGLRKNPG 742 (788)
Q Consensus 719 ---~g~~~~A~~~~~~~~~~~~~~~~~ 742 (788)
.|+.+++..++++|.++++++.|+
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999988888886
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-18 Score=192.33 Aligned_cols=395 Identities=10% Similarity=0.028 Sum_probs=268.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCCh
Q 035503 322 SSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDV 398 (788)
Q Consensus 322 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~ 398 (788)
.-.+......|+.++|++++.+....++ .....+..+...+.+.|++++|..+++... +.+.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~---------------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~ 83 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQ---------------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND 83 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3444555556666666666655543222 223345566666666666666666666643 2345
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
..+..++..+...|++++|+..++++.... +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l 160 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 556677777788888888888888887762 33344 6677777888888888888888886652 22455566677777
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHH------HHHHHHHHh-----hccCch---HHHHHHHHHHHHcC---CCCChhHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTT------TITCALSAC-----TDVASL---RNGRAIHGYLIRHD---LCLPTPIV 541 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~~---~~~~~~~~ 541 (788)
...|..++|+..++.... .|+.. .....+... ...+.+ ++|...++.+++.- +.......
T Consensus 161 ~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 778888888887776553 23210 111111211 112233 66777888887642 21111111
Q ss_pred HH---HHHHHHHcCCHHHHHHHHhhCCCCC--hhh--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHH
Q 035503 542 TS---LVDMYAKCGNIHQAKRVFDISPSKE--LPV--YNAMISGYAMHGLAVEALALFKNLQQKGIDP---DSITFTNIL 611 (788)
Q Consensus 542 ~~---l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll 611 (788)
.. .+.++...|++++|+..|+.+...+ .+. -..+..+|...|++++|+..|+++....... .......+.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11 1223457799999999999887642 122 2235778999999999999999987643111 123455566
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcC----------CCCC---cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHH
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQ----------VKPS---MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIG 676 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~ 676 (788)
.++...|++++|..+++.+..... -.|+ ...+..++..+...|++++|++.++++ . .+.+...+.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 678899999999999998865321 1122 124457788899999999999999997 2 334467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++..+...|++++|+..++++++++|+++..+..++.++...|++++|..+++.+++..+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999988654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-18 Score=187.20 Aligned_cols=329 Identities=9% Similarity=-0.022 Sum_probs=260.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHH
Q 035503 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479 (788)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 479 (788)
....++..+.+.|++++|..+++..+..... +...+..++.++...|++++|...|+++.... +.+...|..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455677788899999999999998887433 34445556667778999999999999997652 335677888888999
Q ss_pred hCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 480 QNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
..|++++|...++++... .|+ ...+..+...+...|++++|...++.+....+. +...+..+. .+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHHH
Confidence 999999999999999874 454 556777888899999999999999988887774 344444443 478899999999
Q ss_pred HHHhhCCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHH----HHHHHHhc
Q 035503 559 RVFDISPSKE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE----GLELFVGM 630 (788)
Q Consensus 559 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----A~~~~~~~ 630 (788)
..++.+.+.+ ...+..++.++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|+++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9998765532 2334556678889999999999999988764 3356677778888999999885 78999988
Q ss_pred HhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 631 FSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 631 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.. +.|+ ...+..++..+.+.|++++|+..++++ ...|+ ...+..++.++...|++++|+..++++++.+|+++.
T Consensus 277 l~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred Hh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 73 4565 567779999999999999999999887 34444 456778888899999999999999999999999887
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
.+..++.++...|++++|...|++..+..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7777888999999999999999998877654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-16 Score=160.46 Aligned_cols=650 Identities=12% Similarity=0.076 Sum_probs=376.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhcc
Q 035503 50 QISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKC 129 (788)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (788)
....+.-+|++++|+.++.+.++.. +.....|..|...|-.+|+.+++...+-.+.-.. |.|...|..+.......
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHhc
Confidence 3344455599999999999999876 4566789999999999999999988776665554 78889999999999999
Q ss_pred CChHHHHHHhccCCCCCcccHHH---HHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHH----HHHhcccCCchHHH
Q 035503 130 DALDVASRLFCRLRVKNVFSWAA---IIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV----LKACGALGWVGFGR 202 (788)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~ 202 (788)
|.++.|.-+|.+..+.+...|-. -+..|.+.|+...|.+.|.++.+...+.|-.-+..+ ++.+...++-+.|.
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999886554443443 355788899999999999999876542222222222 22233333334444
Q ss_pred HHHHHHHHHc-CCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC----CCcchHHHHHHHHHHCCChhHHHHHHHHHHHc
Q 035503 203 AVHGYVLKVG-FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA----RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277 (788)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 277 (788)
+.++...+.+ -..+...++.++..|.+...++.|......+.. +|..-|.. + ..++. .-..++. ...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~----~-~~~~~-~~~~~~~--~~~ 372 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT----D-ERRRE-EPNALCE--VGK 372 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh----h-hhccc-ccccccc--CCC
Confidence 4444443311 122233444444444444444444444333321 11111100 0 00000 0000000 001
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHH
Q 035503 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVING--MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL 355 (788)
Q Consensus 278 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 355 (788)
++.++... ..+.-++......+....+...+.... ...+...|..+.++|...|++..|+.+|..+.....
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~------ 445 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG------ 445 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc------
Confidence 12222222 122223344455555555555555555 344566777788888888888888888877765443
Q ss_pred HHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHH-------
Q 035503 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQ------- 425 (788)
Q Consensus 356 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~------- 425 (788)
..+..+|-.++.+|...|.+++|.+.|+.+... +...--++...+-+.|+.++|.+.+..+.
T Consensus 446 --------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 446 --------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred --------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 233557777888888888888888888877633 33344556667777888888888887743
Q ss_pred -HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----------------------CCChhhHHHHHHHHHhCC
Q 035503 426 -LEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV----------------------QPNLITWTTLISGLTQNS 482 (788)
Q Consensus 426 -~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~----------------------~~~~~~~~~li~~~~~~g 482 (788)
..+..|+..........+.+.|+.++-+.+-..|..... .-...+...++.+-.+.+
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~ 597 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT 597 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC
Confidence 223445555556666677777877775555544432210 011111222222222222
Q ss_pred CchHHHHH------HHHHHhCCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CCh---hHHHHHHHHHH
Q 035503 483 CGNEAILF------FQEMLETGIKPST--TTITCALSACTDVASLRNGRAIHGYLIRHDLC--LPT---PIVTSLVDMYA 549 (788)
Q Consensus 483 ~~~~A~~~------~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~---~~~~~l~~~~~ 549 (788)
+......- +.--...|+.-+. ..+..++.++++.+.+++|..+...+.....- ++. ..-...+.+..
T Consensus 598 ~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~ 677 (895)
T KOG2076|consen 598 DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASL 677 (895)
T ss_pred chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 22111111 1111111222221 23445566777788888888888777764321 111 23344455566
Q ss_pred HcCCHHHHHHHHhhCCCC-----Ch---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCc
Q 035503 550 KCGNIHQAKRVFDISPSK-----EL---PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGL 619 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~ 619 (788)
..+++..|...++.+... ++ ..||...+...+.++-.--.+++...... .|+. ..+.....-....+.
T Consensus 678 ~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 678 YARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccc
Confidence 778888888887766543 33 35665555555555544334444443332 2222 111122223455677
Q ss_pred HHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhh--cC--------ChHHHHHHHHhC---C-CCCCHHHHHHHHHHHHh
Q 035503 620 VNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSR--CG--------NLDEALRVILTM---P-CDPDAHIIGSLLSTCVK 684 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~--~g--------~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~~~ 684 (788)
+..|+..|-++. ...|+.+..+ +|+.++.. .+ ..-.+..++.+. . ......++.+++++|..
T Consensus 756 ~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~ 832 (895)
T KOG2076|consen 756 FKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQ 832 (895)
T ss_pred hHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 888888887665 4457766555 55444421 11 123344454443 1 11245678899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCC------------CchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 685 SNETELAEYISEHLLQLEPDN------------PGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
.|-...|+..|+++++..|.+ ..+-++|.-+|..+|+...|.+++++
T Consensus 833 ~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 833 IGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 999999999999999987653 22567888899999999999998764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-17 Score=186.84 Aligned_cols=333 Identities=11% Similarity=0.017 Sum_probs=220.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 035503 369 VASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR 445 (788)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 445 (788)
....++.++...|++++|+..+++... .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+..
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 333444444555555555555554431 2344 6666777777777777777777777762 2234444556666677
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCh------hhHHHHHHHHH-----hCCCc---hHHHHHHHHHHhC-CCCCCHH-HHH--
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPNL------ITWTTLISGLT-----QNSCG---NEAILFFQEMLET-GIKPSTT-TIT-- 507 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~~-- 507 (788)
.+..++|+..++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 7777777777765543 1111 01112222221 12233 6678888887753 1223221 111
Q ss_pred --HHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-------hhhHHHHHHH
Q 035503 508 --CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE-------LPVYNAMISG 578 (788)
Q Consensus 508 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~ 578 (788)
..+.++...|+.++|+..++.+.+.++..+......++.+|...|++++|+..|+.+...+ ...+..+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133455668888888888888887653233334446778888999999999888765422 1235566777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCC-----------CCCH---hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchH
Q 035503 579 YAMHGLAVEALALFKNLQQKGI-----------DPDS---ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHF 643 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 643 (788)
+...|++++|+.+++++..... .|+. ..+..+...+...|+.++|++.++++... .|+ ...+
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~ 396 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLR 396 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 8899999999999999877521 1232 23445666788999999999999998743 354 6677
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
..++.++...|++++|++.++++ ...|+ ...+...+..+...|++++|+..++++++..|+++.+.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 79999999999999999999998 44565 55677778888999999999999999999999987554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=180.28 Aligned_cols=296 Identities=14% Similarity=0.124 Sum_probs=220.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHH
Q 035503 370 ASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN---IISWNSVILGF 443 (788)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~ 443 (788)
.......+...|++++|...|.++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...|
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 334456677889999999999999743 455788899999999999999999999987643222 25678889999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHH
Q 035503 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523 (788)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 523 (788)
.+.|++++|..+|+++.+. .+++..++..++..+...|++++|.+.++.+.+.+..+.....
T Consensus 118 ~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------- 179 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI----------------- 179 (389)
T ss_pred HHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-----------------
Confidence 9999999999999999765 2346788999999999999999999999999875422221100
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 600 (788)
...+..++..+.+.|++++|...|+++.+ .+...+..++..+.+.|++++|+++|+++.+.+.
T Consensus 180 --------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 180 --------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred --------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 01223345555566666666666655432 2234566777788888888888888888876532
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 035503 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLL 679 (788)
Q Consensus 601 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 679 (788)
.....++..++.+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|..+++++ ...|+...+..++
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 22245567777888888999999888888864 3577667778888888999999999988776 5568888888777
Q ss_pred HHHHh---cCCHHHHHHHHHHHHh
Q 035503 680 STCVK---SNETELAEYISEHLLQ 700 (788)
Q Consensus 680 ~~~~~---~g~~~~A~~~~~~~~~ 700 (788)
..+.. .|+.+++...++++++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHH
Confidence 76553 4577788777777664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-16 Score=170.81 Aligned_cols=184 Identities=13% Similarity=0.041 Sum_probs=123.2
Q ss_pred HHHHCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChh
Q 035503 257 GYVQNGLNEEAIRVFYEMTLEGVEPTRV-SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335 (788)
Q Consensus 257 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 335 (788)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++... ............+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 456889999999999998875 35431 22277777777788888888888877 111222333334466788888888
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHH--cCC
Q 035503 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD--LGR 413 (788)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~g~ 413 (788)
+|+++|+++.+.++ .++.++..++..+...++.++|++.++++.+.++.....++.++.. .++
T Consensus 120 ~Aiely~kaL~~dP---------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 120 QALALWQSSLKKDP---------------TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHHhhCC---------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcch
Confidence 88888888877766 4455666777778888888888888887765444332223333333 455
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 414 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
..+|++.++++.+.. +.+...+..+..++.+.|-...|.++.++-
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 555888888887763 334556667777777777777777666653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-15 Score=162.94 Aligned_cols=446 Identities=12% Similarity=0.042 Sum_probs=277.6
Q ss_pred HHHHHhHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC
Q 035503 222 SLIDMYGKCGDLEEARKVFDGMIARNVV---AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA 298 (788)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 298 (788)
.-+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... -.........+...+...|+
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 3444568899999999999998654333 2338888888999999999999998721 12233333334557778899
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHh
Q 035503 299 LDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYA 378 (788)
Q Consensus 299 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~ 378 (788)
++.|..+++.+++.... +...+..++..|...++.++|++.++++...++. ...+..++..+.
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~----------------~~~~l~layL~~ 180 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPT----------------VQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc----------------hHHHHHHHHHHH
Confidence 99999999999988644 3566667888999999999999999999877662 223455555555
Q ss_pred hcCChHHHHHHHHhccc--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 035503 379 KCERIDNAKQVFNSIIL--R-DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455 (788)
Q Consensus 379 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 455 (788)
..++..+|++.++++.. | +...+..+...+.+.|-...|+++.++ .|+.++-...... +.+.|.+.
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~ 249 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQ 249 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHH
Confidence 56777679999998863 3 556678888889999999888877664 3333222111110 01111111
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCH-H----HHHHHHHHhhccCchHHHHHHHHHH
Q 035503 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPST-T----TITCALSACTDVASLRNGRAIHGYL 529 (788)
Q Consensus 456 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~ 529 (788)
.+-. ..++..- -. +---.+.|+.-++.+... +-.|.. . ...-.+.++...++..+++..++.+
T Consensus 250 vr~a----~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 250 VRMA----VLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred Hhhc----ccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1110 0000000 00 000123344444444331 111211 1 1112233455556666666666666
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-
Q 035503 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK---------ELPVYNAMISGYAMHGLAVEALALFKNLQQKG- 599 (788)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 599 (788)
...+.+.+..+...++++|...++.++|..+|+.+... +......|.-+|...+++++|..+++++.+..
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 66555455556666666666666666666666654321 11223556667777777777777777776521
Q ss_pred ------------CCCCHhH-HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 600 ------------IDPDSIT-FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 600 ------------~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
..||-.. +..++..+...|+..+|++.++++.. .-+-+......+++.+...|++.+|++.++.+
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1122222 23344457788888888888888864 22334667778888888888888888888776
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 667 -PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 667 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
...|+ ..+....+.++...+++++|....+++++..|+++.+.
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 24444 34566677777888888888888888888888877443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-15 Score=140.01 Aligned_cols=325 Identities=15% Similarity=0.154 Sum_probs=195.9
Q ss_pred CCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH---hccCCCchhHHHHHHHHHHhCCCCCCch
Q 035503 40 YESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQG---CVYKRDMYTGQQIHARILKNGDFFARNE 116 (788)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 116 (788)
-|..+.+-|+|+.. ..+|+.+++.-+|+.|.+.|++.++..-..|+.. |-.+.-.-.-.+.|-.+.+.| +.+.
T Consensus 112 ~~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~---E~S~ 187 (625)
T KOG4422|consen 112 DPLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG---EDST 187 (625)
T ss_pred CchhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc---cccc
Confidence 45556667776654 5778999999999999999999988765555544 222232323344455555444 2222
Q ss_pred hHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccC
Q 035503 117 YVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALG 196 (788)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 196 (788)
..| +.|++.+ -+|+..| +...++..||.++++--..+.|.++|++-.....+.+..+|+.+|.+-+-.
T Consensus 188 ~sW--------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~- 255 (625)
T KOG4422|consen 188 SSW--------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS- 255 (625)
T ss_pred ccc--------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-
Confidence 222 3455444 4555554 456789999999999999999999999998888899999999999876533
Q ss_pred CchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhc----C----CCCCcchHHHHHHHHHHCCChhH-H
Q 035503 197 WVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG----M----IARNVVAWNSMIVGYVQNGLNEE-A 267 (788)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~-a 267 (788)
..+++..+|+...+.||..++|+++....+.|+++.|++.+-+ | .+|...+|..+|..+.+.++..+ +
T Consensus 256 ---~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 256 ---VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred ---ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 3388899999999999999999999999999988877654322 2 33444455555555544444422 2
Q ss_pred HHHHHHHHH----cCCCC----CHHHHHHHHHHhcCcCChhHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhcCChh
Q 035503 268 IRVFYEMTL----EGVEP----TRVSVTSILSASANLDALDEGKQAHAVAVING----MELDNVLGSSIINFYSKVGLLE 335 (788)
Q Consensus 268 ~~~~~~m~~----~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~ 335 (788)
..++.++.. ..++| |..-|...+..|....+.+.|.+++....... +.++.
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------- 395 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------- 395 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------
Confidence 222222221 11111 33334444444444455555544444333211 01110
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc----CChhHHHHHHHHHHHc
Q 035503 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL----RDVVLWNTLLAAYADL 411 (788)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 411 (788)
.....|..+....|....++.-...++.+.. |+..+...++++....
T Consensus 396 -----------------------------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 396 -----------------------------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 1111344455555555555666666655542 3445555556666666
Q ss_pred CChhHHHHHHHHHHHcCC
Q 035503 412 GRSGEASRLFYQMQLEGI 429 (788)
Q Consensus 412 g~~~~a~~~~~~m~~~~~ 429 (788)
|.++-.-+++..++..|.
T Consensus 447 ~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 447 NRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CcchhHHHHHHHHHHhhh
Confidence 666666666666665553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-16 Score=148.11 Aligned_cols=275 Identities=11% Similarity=0.098 Sum_probs=209.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH--HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCch
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL--TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 519 (788)
.+.+.|+++.|+++++-+.+..-......-+.|-..+ .-..++..|.++-+..+... +-+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4678888888888888876553222222222222222 22446777777777666432 33344443334445567889
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 035503 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQ 596 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 596 (788)
++|...+++++..+. .-......++-.+...|++++|+..|-++. ..+......+...|....+..+|++++.+..
T Consensus 507 dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999999888766 444555667778889999999999996543 4677778888999999999999999998876
Q ss_pred HcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 035503 597 QKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDAHII 675 (788)
Q Consensus 597 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 675 (788)
.. ++.|+.....|...|.+.|+-.+|.+.+-.--+ -++.+.++...|+.-|....-+++|+.+|+++. ..|+..-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 54 455778888899999999999999887764432 344568899999999999999999999999984 68999999
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 676 GSLLSTC-VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 676 ~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
..++..| ++.|++++|...|+.+....|.+...+..|..+.-..|-
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9988887 567999999999999999999999999999999888875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-13 Score=143.97 Aligned_cols=619 Identities=12% Similarity=0.102 Sum_probs=390.2
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhcc---CCCCCcccHHHHHHHHHcCCCchHH
Q 035503 90 VYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCR---LRVKNVFSWAAIIGLNCRVGLSEKA 166 (788)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 166 (788)
...|++++|..++.++++.. |.....|..|...|-..|+..++...+-. +...|-.-|..+..-..+.|+++.|
T Consensus 150 farg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 34588888999888888885 77888888888888888888888777633 3344566788888888888888888
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchh----hhhHHHHHhHhcCChHHHHHHHhc
Q 035503 167 LIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVF----VASSLIDMYGKCGDLEEARKVFDG 242 (788)
Q Consensus 167 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~ 242 (788)
.-.|.+.++.. +++...+---...|-+.|+...|..-+.++.....+.|.. ..-..++.|...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888887753 2233333444556777888888888888887776433322 222345556667777888888777
Q ss_pred CCC--C---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHH--hCCC
Q 035503 243 MIA--R---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI--NGME 315 (788)
Q Consensus 243 ~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~ 315 (788)
... . +...+|.++..|.+...++.+......+......+|..-+.+== .-......... .+..
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----------~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----------RRREEPNALCEVGKELS 375 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----------hccccccccccCCCCCC
Confidence 654 2 33467788888888888888888887777654455544331100 00000000001 1223
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc
Q 035503 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395 (788)
Q Consensus 316 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 395 (788)
++..+ ..++-++.+....+....+.....+.+... ..+...+..+.++|...|++.+|+.+|..+..
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~------------~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWV------------SDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCCh------------hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 33333 123333344444444444444443333211 24556889999999999999999999998863
Q ss_pred ----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhC--------C
Q 035503 396 ----RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSL--------G 463 (788)
Q Consensus 396 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------g 463 (788)
.+...|-.+..+|...|.+++|.+.|+..+... +-+...-.+|...+.+.|+.++|.+.+..+... +
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a 521 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACA 521 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcc
Confidence 256789999999999999999999999998862 334556667888899999999999999996422 3
Q ss_pred CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHhhccCchHH
Q 035503 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-----IKP-----------------STTTITCALSACTDVASLRN 521 (788)
Q Consensus 464 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~ll~~~~~~~~~~~ 521 (788)
..|+...-....+.+.+.|+.++-+.+-.+|+... +-| .......+..+-...++...
T Consensus 522 ~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 601 (895)
T KOG2076|consen 522 WEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNV 601 (895)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHH
Confidence 34455555556677888899888666655554321 111 11222222223222222211
Q ss_pred HHHHHH------HHHHcCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHhhCCCC-----Chh----hHHHHHHHHHhCCC
Q 035503 522 GRAIHG------YLIRHDLCLPT--PIVTSLVDMYAKCGNIHQAKRVFDISPSK-----ELP----VYNAMISGYAMHGL 584 (788)
Q Consensus 522 a~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~l~~~~~~~g~ 584 (788)
..+... -....+...+. ..+..++..+++.+++++|..+...+... +.. .-...+.+.+..++
T Consensus 602 ~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d 681 (895)
T KOG2076|consen 602 MEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD 681 (895)
T ss_pred hhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC
Confidence 111111 11112222221 35566788899999999999998766542 221 22356677788999
Q ss_pred HHHHHHHHHHHHHc-CC--CCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc--chHHHHHHHHhhcCChHH
Q 035503 585 AVEALALFKNLQQK-GI--DPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM--EHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 585 ~~~A~~~~~~m~~~-~~--~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 658 (788)
+..|...++.|... +. .|. ...|+...+...+.++-.--.+++.++. ...|+. ..+...+..+...+.+.-
T Consensus 682 ~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~ 758 (895)
T KOG2076|consen 682 PGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKH 758 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHH
Confidence 99999999998875 11 222 2334434445555555433334443332 223333 222234455677888988
Q ss_pred HHHHHHhC-CCCCCHHHHHH-HHHHHH----------hcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhCCCcHH
Q 035503 659 ALRVILTM-PCDPDAHIIGS-LLSTCV----------KSNETELAEYISEHLLQLEPD--NPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 659 A~~~~~~~-~~~p~~~~~~~-l~~~~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~ 724 (788)
|+..+-++ ...||.+..+- ++.++. ++-..-++..++++..++.-. ...+.+++|.+|-..|-..-
T Consensus 759 Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~L 838 (895)
T KOG2076|consen 759 ALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHL 838 (895)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHH
Confidence 98877665 34455333222 222221 122346677777777665443 67899999999999999999
Q ss_pred HHHHHHHHHHCCCcc
Q 035503 725 VSQVRDIMKEKGLRK 739 (788)
Q Consensus 725 A~~~~~~~~~~~~~~ 739 (788)
|..+|+++++..++.
T Consensus 839 A~~YYekvL~~~p~~ 853 (895)
T KOG2076|consen 839 AVSYYEKVLEVSPKD 853 (895)
T ss_pred HHHHHHHHhCCCccc
Confidence 999999999876543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-12 Score=130.75 Aligned_cols=548 Identities=13% Similarity=0.079 Sum_probs=400.5
Q ss_pred CchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCC-hHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHH
Q 035503 94 DMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA-LDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVE 172 (788)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (788)
..+.|..+....++. .|.++.+|..-...-....+ ..--++.++.+|. ++..|. +.....+.+.|.-++.+
T Consensus 330 p~d~aK~vvA~Avr~---~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~-sv~LWK----aAVelE~~~darilL~r 401 (913)
T KOG0495|consen 330 PPDVAKTVVANAVRF---LPTSVRLWLKAADLESDTKNKKRVLRKALEHIPR-SVRLWK----AAVELEEPEDARILLER 401 (913)
T ss_pred ChHHHHHHHHHHHHh---CCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCc-hHHHHH----HHHhccChHHHHHHHHH
Confidence 445566666666666 36666555444433321111 1112233333332 444454 33445667778888888
Q ss_pred HHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC-------
Q 035503 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA------- 245 (788)
Q Consensus 173 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 245 (788)
..+- -|. -.-+.-++++..-++.|+.+++...+. ++.+..+|..-...--..|+.+...+++++-..
T Consensus 402 Avec--cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv 475 (913)
T KOG0495|consen 402 AVEC--CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV 475 (913)
T ss_pred HHHh--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce
Confidence 7763 222 123455667777888899998887654 588888888888888888999888888876521
Q ss_pred -CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHH
Q 035503 246 -RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP--TRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGS 322 (788)
Q Consensus 246 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 322 (788)
-+...|-.=...|-..|..-.+..+....+..|+.- -..||..-...|.+.+.++-++.+|...++.- +.+...|.
T Consensus 476 ~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWl 554 (913)
T KOG0495|consen 476 EINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWL 554 (913)
T ss_pred eecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHH
Confidence 144466666777778888888888888888777653 45688888889999999999999999888763 44556666
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHH
Q 035503 323 SIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWN 402 (788)
Q Consensus 323 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 402 (788)
..+.+--..|..++-..+|++....-+ .....|-
T Consensus 555 ra~~~ek~hgt~Esl~Allqkav~~~p----------------------------------------------kae~lwl 588 (913)
T KOG0495|consen 555 RAAMFEKSHGTRESLEALLQKAVEQCP----------------------------------------------KAEILWL 588 (913)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCC----------------------------------------------cchhHHH
Confidence 666555555555555555555433211 2345566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCC
Q 035503 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 482 (788)
...+.+...|+...|..++.++.+.. +.+...+..-+.......+++.|..+|.+.... .|+...|.--+...--.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 66777778888999999888888774 336677777888888899999999999888664 557777877777777888
Q ss_pred CchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 035503 483 CGNEAILFFQEMLETGIKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561 (788)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (788)
+.++|++++++.++ .-|+.. .|..+.+.+.+.++++.|...|..-.+.-| ..+..|..|...-.+.|.+-.|..++
T Consensus 666 ~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 666 NVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHH
Confidence 99999999999887 356654 667777788889999999999888777666 67788999999999999999999999
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC
Q 035503 562 DISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP 638 (788)
Q Consensus 562 ~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 638 (788)
++..- .+...|-..|..-.+.|+.+.|..++.+.++. ++.+...|..-|...-+-++-......+++. .-
T Consensus 743 drarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~ 815 (913)
T KOG0495|consen 743 DRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EH 815 (913)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cC
Confidence 86653 45578999999999999999999999988775 3445566666666566666655555555433 45
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 639 SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
|+.....++.++....++++|.+.|.+. ...||. .+|-.+...+..+|.-+.-..++.+...-+|.+...|.....-
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 6777778999999999999999999988 455554 6898999999999999999999999999999998888776543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-14 Score=147.08 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=176.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCC
Q 035503 65 DLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV 144 (788)
Q Consensus 65 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (788)
.++-.|...|+.|+..||..++..||..|+.+.|- +|..|.-.. .+....+++.++......++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccccccccCCC-------C
Confidence 45677888899999999999999999999999888 888888777 8888889999999988888887665 7
Q ss_pred CCcccHHHHHHHHHcCCCchH---HHHHHHHHH----HCCCCCCcccHHHHHHHhcccC-Cch------HHHHHHHHHHH
Q 035503 145 KNVFSWAAIIGLNCRVGLSEK---ALIGFVEMQ----EDGVSPDNFVLPNVLKACGALG-WVG------FGRAVHGYVLK 210 (788)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~-~~~------~a~~~~~~~~~ 210 (788)
|...+|..|..+|.+.||... ..+.++... ..|+.....-+-..+++|-..- +.. --+.+++..++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999998654 222222221 1233322223333333332110 100 01223333344
Q ss_pred HcCCCchhhhhHH----HHHhHh-cCChHHHHHHHhcCCC-CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHH
Q 035503 211 VGFDGCVFVASSL----IDMYGK-CGDLEEARKVFDGMIA-RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284 (788)
Q Consensus 211 ~~~~~~~~~~~~l----i~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 284 (788)
.+..-.+..++.- ++-... ...+++-........+ +++.+|..++.+-..+|+.+.|..++.+|++.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 3311111111111 111111 1223444444444444 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 035503 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL 333 (788)
Q Consensus 285 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 333 (788)
-|..++-+ .++...+..+...|...|+.|+..|+...+..+.++|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888766 78888899999999999999999999887777777555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-13 Score=132.36 Aligned_cols=436 Identities=14% Similarity=0.157 Sum_probs=333.7
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc
Q 035503 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL 395 (788)
Q Consensus 316 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 395 (788)
.+...|......-..++++..|..+|++....|. .+..++...+++-.++..+..|..+++....
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~---------------r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDY---------------RNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc---------------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 3445555556666677888889999998877664 3445777788888889999999999988752
Q ss_pred --CC-hhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHH
Q 035503 396 --RD-VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWT 472 (788)
Q Consensus 396 --~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 472 (788)
|- ...|.-.+..--..|++..|.++|++...- .|+...|++.++.-.+-+.++.|..+++...-. .|++.+|-
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wi 211 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWI 211 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHH
Confidence 22 235666666777789999999999998875 899999999999999999999999999998654 47899998
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH----HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTT----TITCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLVDM 547 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 547 (788)
.....-.+.|+...|..+|....+. -.|.. .+.+...--.....++.|..+++.++..-|... ..+|..+...
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 8888888999999999999988763 22332 233333333456788999999999998776433 4455555555
Q ss_pred HHHcCCHHHHHHHH--------hhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-------HHHH
Q 035503 548 YAKCGNIHQAKRVF--------DISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI-------TFTN 609 (788)
Q Consensus 548 ~~~~g~~~~A~~~~--------~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ 609 (788)
--+-|+........ +...+ -|..+|--.+..-...|+.+...+.|++.+.. ++|-.. .|.-
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 55556654443332 22223 34457777888888899999999999998875 566321 1211
Q ss_pred HHHH---hhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHH----HHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 035503 610 ILNA---CSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVV----NLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLS 680 (788)
Q Consensus 610 ll~~---~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 680 (788)
+=.+ -....+++.+.++|+..+ .+-|. .-+|..+- ....++.++..|.+++..+ +..|...++...+.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l---~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACL---DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH---hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 1112 235789999999999987 45565 44555433 3346889999999999877 67789999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCC
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDR 760 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (788)
.-.+.++++....+|++.++..|.+..+|...+.+-...|+++.|..+|..++++.....|...|- ....|.....
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~ 521 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEG 521 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----Hhhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999988788876663 5567888888
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 035503 761 SHPKTEEIYATLALLGMHVR 780 (788)
Q Consensus 761 ~~~~~~~~~~~l~~~~~~~~ 780 (788)
.+..+..+|.+|.+..++.|
T Consensus 522 E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVK 541 (677)
T ss_pred hHHHHHHHHHHHHHhcccch
Confidence 99999999999998777665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-14 Score=136.07 Aligned_cols=277 Identities=14% Similarity=0.093 Sum_probs=191.8
Q ss_pred HHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHH
Q 035503 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNT 403 (788)
Q Consensus 327 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 403 (788)
-|.++|+++.|++++.-...+|..+-+..... ...+..+.-..++..|...-+....- +......
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~n------------l~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANN------------LCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhh------------hHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 46677778877777777766554332211100 01111111123455555555444322 3333333
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCC
Q 035503 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483 (788)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 483 (788)
-.......|++++|.+.+++.+...-.-....|| +.-.+-..|+.++|++.|-++... +..+......+...|-...+
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLED 573 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhC
Confidence 3334455789999999999988663222223333 333467789999999999887332 12267777778888989999
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
..+|++++-+.... ++.|+..+..+...|-+.|+-.+|.+++-...+.-| .+..+...|+..|....-+++|+..|++
T Consensus 574 ~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp-~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 574 PAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-CNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC-cchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999887764 556677888888999999999999998887777666 7788888899999999999999999985
Q ss_pred --CCCCChhhHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcH
Q 035503 564 --SPSKELPVYNAMISG-YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV 620 (788)
Q Consensus 564 --~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 620 (788)
+.+|+..-|..|+.. +.+.|++.+|.++|+....+ ++.|......|++.+...|..
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 456888889887654 55689999999999987665 566778888888878777743
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-12 Score=122.43 Aligned_cols=320 Identities=14% Similarity=0.120 Sum_probs=155.1
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHh--cccCCchHHH-HHHHHHHHHcCCCchhhhhHHH
Q 035503 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC--GALGWVGFGR-AVHGYVLKVGFDGCVFVASSLI 224 (788)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li 224 (788)
.+=|.|+. +...|...++.-+|+.|.+.|+......-..+++.- ..+.+...+. +.|-.|.+.| +.+..+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s----- 189 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS----- 189 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc-----
Confidence 34454444 345678888888899998888776665544444332 2333332221 2222222222 111111
Q ss_pred HHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 035503 225 DMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ 304 (788)
Q Consensus 225 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 304 (788)
.+.|++.+ ++-+...+...+|..||.+.++--..+.|.+++++-.....+.+..+|+.+|.+.+-.. ..+
T Consensus 190 ---WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~ 259 (625)
T KOG4422|consen 190 ---WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKK 259 (625)
T ss_pred ---cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHH
Confidence 12233222 22233333444555555555555555555555555555555555555555555433221 245
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHH----HHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 035503 305 AHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEV----VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKC 380 (788)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~ 380 (788)
+...|....+.||..|+|+++.+..+.|+++.|.. ++.+|.+-++ .|....|..++..+++.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV--------------ePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV--------------EPSLSSYHLIIKNFKRE 325 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC--------------CcchhhHHHHHHHhccc
Confidence 55555555555555555555555555555544432 3333333222 22222333333333332
Q ss_pred CChHH-HHHHHHhcc------------cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCc---hhHHHHHH
Q 035503 381 ERIDN-AKQVFNSII------------LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE----GISPN---IISWNSVI 440 (788)
Q Consensus 381 ~~~~~-A~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~---~~~~~~ll 440 (788)
++..+ +..++.++. ..|...|...+..|.+..+.+-|.++..-+... -+.|+ .+-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 22211 111111111 123344556666666666666666655544321 12222 22345555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 035503 441 LGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498 (788)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (788)
...+.....+.....|+.|...-+-|+..+...++.+..-.|.++-.-+++.++...|
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 5666666666666666666555555666666666666666666666666666655544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-13 Score=131.67 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=167.9
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEAL 589 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 589 (788)
+.-.|+.-.+..-++.++...+. +...|..++.+|....+.++-+..|+...+ .++.+|..-...+.-.+++++|+
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 34467777888888888887773 334477777888888888888888876544 45567777777777778888999
Q ss_pred HHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 035503 590 ALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P 667 (788)
Q Consensus 590 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 667 (788)
.=|++.++. .| +...|..+.-+.-+.++++++...|++.++ .++..++.|+..+..+..++++++|.+.|+.+ .
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 989887774 44 456677777777788899999999999976 44455788888899999999999999999887 3
Q ss_pred CCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 668 CDPD---------AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 668 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.+|+ +.+...++..-.+ +|+..|+.++++++++||....+|..|+.+-..+|+.++|+++|++....
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444 1222223322223 89999999999999999999999999999999999999999999987543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-12 Score=128.61 Aligned_cols=266 Identities=13% Similarity=0.047 Sum_probs=207.8
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 466 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
-++.......+-+...+++.+..++++...+. .++....+..-+.++...|+..+-..+-.++++..| ..+..|.+++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHH
Confidence 35555666667778888999999999988875 356666666666677888888887777778888777 6777888888
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHH
Q 035503 546 DMYAKCGNIHQAKRVFDISPSKEL---PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 622 (788)
-.|...|+..+|.+.|.+...-|. +.|-.++..|.-.|..++|+..|...-+. ++-....+..+.--|.+.+..+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 888888999999999987665443 68999999999999999999988876553 11122233344445888899999
Q ss_pred HHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 035503 623 GLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP--------CDP-DAHIIGSLLSTCVKSNETELAE 692 (788)
Q Consensus 623 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~A~ 692 (788)
|.++|..+. ++.|+ +-..+-++......+.+.+|..+|+... ..+ ...++++|+.+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999998776 66676 5566677777788889999988887761 111 3457888999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 693 YISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..+++++.+.|.++.++..+|-+|...|+.+.|.+.|.+.+...+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999888776543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-16 Score=154.81 Aligned_cols=256 Identities=16% Similarity=0.154 Sum_probs=110.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCHHH-HHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTT-ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
+...+.+.|++++|++++++......+|+... +..+...+...++.+.|...++++...+. .++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 35555666666666666654433221233333 33334445556667777777777766655 355556666666 6778
Q ss_pred CHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 553 NIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 553 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
++++|.+++....+ ++...+..++..+...|+++++.++++++.... .+++...|..+...+.+.|+.++|++.|++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887765533 455667778888889999999999999876543 234666777777888999999999999999
Q ss_pred cHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 630 MFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 630 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
+++ ..|+ ......++..+...|+.+++.++++... .+.++..|..++.++...|+.++|...++++++.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 874 4565 6677789999999999999888877762 234556788999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
..+..+++++...|+.++|.++++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-12 Score=122.98 Aligned_cols=324 Identities=13% Similarity=0.074 Sum_probs=230.4
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhH---H
Q 035503 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW---T 472 (788)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~ 472 (788)
.|...+-.....+.+.|..+.|++.|...+.. .+-....|..|.... .+.+.+. .+.. |.+.| .+| -
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~-~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVV-GLPSD-MHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHh-cCccc-chHHHHH
Confidence 35555555566677788888888888877654 233444444333222 2222222 1111 11111 111 1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHH
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYAK 550 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 550 (788)
.+..++....+.++++.-.......|++-+...-+....+.....++++|+.+|+.+.+.+|- .+..+|..++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 234556666678888888888888777666666666666677788999999999999998762 244455444432222
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 551 CGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
+.++.---...-.+.+--+.|...+.+-|.-.++.++|+..|++.+..+ |. ...|+.+..-|....+...|++-|++
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2222211112222333344567777888888999999999999988854 54 45677777789999999999999999
Q ss_pred cHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 630 MFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 630 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
++ .+.| |-..|..|+.+|.-.+...-|+-+|+++ .. +.|...|.+|+..|.+.++.++|+++|.+++...-.+.
T Consensus 390 Av---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 390 AV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 87 5555 5788889999999999999999999998 33 45778999999999999999999999999999888889
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+++.|+++|.+.++.++|...+++-++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999998766
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-12 Score=125.21 Aligned_cols=367 Identities=12% Similarity=0.087 Sum_probs=254.8
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh
Q 035503 355 LIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII 434 (788)
Q Consensus 355 li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 434 (788)
.+..+-..+..|....-...-.+.+.|....|+..|......-+..|.+.+....-.-+.+.+..+ .. |...|..
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h 226 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMH 226 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccch
Confidence 334444444556556666667777889999999999888765555565555544333333332222 11 2222211
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 035503 435 SW--NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI--KPSTTTITCAL 510 (788)
Q Consensus 435 ~~--~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll 510 (788)
.+ --+..++-...+.+++..-.......|++.+...-+....+.....++++|+.+|+++.+... -.|..+|+.++
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 11 223455666667888888888888888876666666666677788899999999999987631 11445666665
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCHHH
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL---PVYNAMISGYAMHGLAVE 587 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 587 (788)
-.-....++. .+.+-+-.-..-.+.+...+++.|.-.++.++|...|++..+.|+ .+|+.|++-|...++...
T Consensus 307 Yv~~~~skLs----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 307 YVKNDKSKLS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HHHhhhHHHH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHH
Confidence 4432222211 111111111124455667788888888999999999987766443 578889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 588 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
|++-|++.++-+ +-|-..|-.|..+|.-.+.+.=|+-+|+++. .++|+ ...+.+|+++|.+.++.++|++.|..+
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999988854 3477889999999999999999999999886 55564 778889999999999999999999888
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 667 P--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ-------LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 667 ~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
- .+.+...+..|+..|-+.++.++|...|++-++ .+|....+..-|+.-+.+.+++++|..+-.....
T Consensus 459 i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 459 ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3 233457788889999999999999999998887 3454455566688888999999999887765543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-12 Score=125.66 Aligned_cols=489 Identities=13% Similarity=0.006 Sum_probs=306.5
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhc--CCCCCcchHHHHHHHHHHCCChhHHHHHHH
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDG--MIARNVVAWNSMIVGYVQNGLNEEAIRVFY 272 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 272 (788)
+..+..|.-+-+++...+ .|+.-.--+..++.-.|+++.|..+... +.+.|..+......++.+..++++|..++.
T Consensus 29 q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555554443 3333334466667777777777666543 345577777777777778888888877776
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhH
Q 035503 273 EMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTW 352 (788)
Q Consensus 273 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 352 (788)
.-. +.-+...+..--. ...-+.+.+..... .......+-.-...|....+.++|...|.+..-.|+..+
T Consensus 107 ~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~------~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~ 175 (611)
T KOG1173|consen 107 RGH---VETNPFSYYEKDA--ANTLELNSAGEDLM------INLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF 175 (611)
T ss_pred ccc---hhhcchhhcchhh--hceeccCccccccc------ccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH
Confidence 321 1111111100000 00000000000000 000001111111234455566777777777665555443
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc-----cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 035503 353 NLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII-----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLE 427 (788)
Q Consensus 353 ~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 427 (788)
..+..-.. ...- ...+-..+|+... ..++.....+.....-...-++....-.+..-.
T Consensus 176 Ea~~~lvs---------------~~ml--t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~ 238 (611)
T KOG1173|consen 176 EAFEKLVS---------------AHML--TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI 238 (611)
T ss_pred HHHHHHHH---------------HHhc--chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh
Confidence 33221111 0000 0112222232211 112222222221111111111111111111122
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHH
Q 035503 428 GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT 507 (788)
Q Consensus 428 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (788)
+..-+......-..-+...+++.+..++++.+.+. .+++...+..-|.++...|+..+-..+=.+|.+. .+-.+.+|.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 34556666677777788999999999999999766 3557777777788999999999988888888875 355567999
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 035503 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGL 584 (788)
Q Consensus 508 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 584 (788)
++..-|...|+..+|++++.+....++ .-...|..++..|+-.|..|.|...+....+ .....+--+.--|.+.++
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 998888899999999999999999887 5566889999999999999999998864433 111123334556888999
Q ss_pred HHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc-CCCC----CcchHHHHHHHHhhcCChHH
Q 035503 585 AVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDH-QVKP----SMEHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 585 ~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~ 658 (788)
.+.|.+.|.+... +.| |+...+-+.-...+.+.+.+|..+|+..+..- .+.+ -.++++.|+.+|.+.+++++
T Consensus 396 ~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999766 455 56666666666777899999999999876311 1111 23457799999999999999
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 659 ALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 659 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
|+..+++. ..+.+..++.+++..|...|+++.|+..|.+++.++|++..+-..|..+...
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999998 3455777899999999999999999999999999999987777777766544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-10 Score=111.26 Aligned_cols=425 Identities=13% Similarity=0.082 Sum_probs=202.0
Q ss_pred HHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCcCCh
Q 035503 224 IDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV-SVTSILSASANLDAL 299 (788)
Q Consensus 224 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~ 299 (788)
..--...+++..|..+|++... +++..|-.-+..=.++.....|..+++..+.. -|.+. .|.--+-.--..|++
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNI 157 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhccc
Confidence 3333445666777777777643 35556666666667777777777777777653 23222 112222222335677
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 035503 300 DEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK 379 (788)
Q Consensus 300 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~ 379 (788)
..|+++|+.-..- +|+...|.+.++.-.+.+.++.|..++++.+-- .|+...+...+..-.+
T Consensus 158 ~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~----------------HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 158 AGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV----------------HPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee----------------cccHHHHHHHHHHHHh
Confidence 7777777665543 567777777777777777777777777765321 1222334444444555
Q ss_pred cCChHHHHHHHHhcccC------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHH
Q 035503 380 CERIDNAKQVFNSIILR------DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN--IISWNSVILGFLRNGQMNE 451 (788)
Q Consensus 380 ~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~ 451 (788)
+|++..|..+|+..... +...+.+....-.++..++.|.-+|+-++.. ++.+ ...|..+...--+-|+...
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhh
Confidence 56666666666554321 2233444444445556666666666666655 1211 2333333333333344332
Q ss_pred HHHH--------HHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH--HHHH--------HHHHh
Q 035503 452 AKDM--------FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT--TITC--------ALSAC 513 (788)
Q Consensus 452 A~~~--------~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~--------ll~~~ 513 (788)
..+. ++.+.+. -+-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.. .+-.-
T Consensus 299 IEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1122221 1224445555555555555666666666655543 344211 0110 01111
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFK 593 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 593 (788)
....+.+.+.++++..++.-| ....++.. .|-.......++.+...|.+++.
T Consensus 377 le~ed~ertr~vyq~~l~lIP-HkkFtFaK---------------------------iWlmyA~feIRq~~l~~ARkiLG 428 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIP-HKKFTFAK---------------------------IWLMYAQFEIRQLNLTGARKILG 428 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcC-cccchHHH---------------------------HHHHHHHHHHHHcccHHHHHHHH
Confidence 223445555555555544322 11111111 12222223334444444544444
Q ss_pred HHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-
Q 035503 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMPCDPD- 671 (788)
Q Consensus 594 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~- 671 (788)
..+ |..|...+|...|..-.+.+.+|....+|++.+ ...|. ..++...+..=...|+.+.|..+|+-+-..|.
T Consensus 429 ~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 429 NAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 422 334444444444444444455555555555443 22232 33444444444445555555555544422221
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 672 ---AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 672 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
...|.+.+.--...|.++.|..+|+++++..+.
T Consensus 504 dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 504 DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 123444444444455555555555555554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-12 Score=135.50 Aligned_cols=277 Identities=9% Similarity=0.033 Sum_probs=167.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCCChhhHHHH-HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHH--HHHHHhhccCchHHH
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTL-ISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT--CALSACTDVASLRNG 522 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a 522 (788)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|.+++.++.+ ..|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 456666655555443321 112222222 2333556666666666666654 234432222 223445556666666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh---h--------hHHHHHHHHHhCCCHHHHHHH
Q 035503 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL---P--------VYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--------~~~~l~~~~~~~g~~~~A~~~ 591 (788)
...++.+.+..| .++.+...+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666666666665 4555666666666666666666666655543111 1 222333333334445555555
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 035503 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP 670 (788)
Q Consensus 592 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 670 (788)
++.+-.. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......++.+++++.+++. ...|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 5554332 234566677777788888888888888877763 34444322 222223458888888888776 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 671 -DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 671 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
|+.....++..|...+++++|+..++++++..|+ ...+..++.++.+.|+.++|.+++++-+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456778888899999999999999999999998 45567889999999999999999887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-13 Score=136.89 Aligned_cols=281 Identities=12% Similarity=0.064 Sum_probs=171.2
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCChhhHHHHHHHHHhCCCchHHHHH
Q 035503 413 RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG--VQPNLITWTTLISGLTQNSCGNEAILF 490 (788)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 490 (788)
+..+|+..|.....+ +.-+......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345666666663333 22233444555666666666666666666664331 01133444444332221 111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-
Q 035503 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL- 569 (788)
Q Consensus 491 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 569 (788)
+ -+.++..++ ..+..|.+++++|.-+++.+.|++.|++...-|+
T Consensus 409 L----------------------------------aq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 409 L----------------------------------AQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred H----------------------------------HHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 1 122222333 4455555566666666666666666655554333
Q ss_pred --hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-chHHH
Q 035503 570 --PVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-EHFGC 645 (788)
Q Consensus 570 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ 645 (788)
.+|+-+..-+.....+|.|...|+..+. +.| +...|..+...|.+.++++.|.-.|+++. .+.|.. ....+
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~ 528 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCH 528 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhh
Confidence 4555555666666666677777766443 333 23455556666777777777777777665 566653 34446
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcH
Q 035503 646 VVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 723 (788)
++..+.+.|+.++|+.+++++ .. +.|+..-..-+..+...+++++|...+|++.++-|++..++..++.+|.+.|+.+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 777777777888888877777 22 2344445555666777888889999999998999998899999999999999999
Q ss_pred HHHHHHHHHHHCCCc
Q 035503 724 EVSQVRDIMKEKGLR 738 (788)
Q Consensus 724 ~A~~~~~~~~~~~~~ 738 (788)
.|+.-|.-+.+..++
T Consensus 609 ~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 609 LALLHFSWALDLDPK 623 (638)
T ss_pred HHHHhhHHHhcCCCc
Confidence 998888888776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=137.21 Aligned_cols=245 Identities=14% Similarity=0.114 Sum_probs=182.1
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHHcCCHH-HHHHH
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYAKCGNIH-QAKRV 560 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~-~A~~~ 560 (788)
..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+..+. .+..+|...+.-+-+.=... -|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 35566666663332 2333344455566666666666666666666665442 34445544443332211111 11111
Q ss_pred HhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 561 FDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 561 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
. ...+..+.+|-+++.+|.-+++++.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.++ + .+
T Consensus 414 i-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~~ 485 (638)
T KOG1126|consen 414 I-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--VD 485 (638)
T ss_pred H-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--CC
Confidence 1 22234668999999999999999999999999887 456 67888888888999999999999998776 4 45
Q ss_pred cchHH---HHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 640 MEHFG---CVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 640 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
+++|+ .|+..|.++++++.|+-.|+++ ...|.. +....++..+.+.|+.|+|+.++++++.++|.++-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 55555 7888999999999999999998 555654 556677788999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHCCC
Q 035503 715 AYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 715 ~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++...+++++|+..++++.+.-+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCc
Confidence 99999999999999999987654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-11 Score=125.44 Aligned_cols=519 Identities=14% Similarity=0.098 Sum_probs=289.5
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCC
Q 035503 168 IGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARN 247 (788)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 247 (788)
.++-.|...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-..++.+..+++.++....+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999998 9999988888888999999999999999988876 678
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHH-HHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHH-hCCCCchhHHHHHH
Q 035503 248 VVAWNSMIVGYVQNGLNEEAIRVFYE-MTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-NGMELDNVLGSSII 325 (788)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 325 (788)
..+|..|..+|...|+... ++..++ |. .+...++..|.......++..+.- .+.-||.. ..+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~i 146 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAI 146 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHH
Confidence 8899999999999999765 222222 21 122223333333333333222111 11222222 333
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCch-hHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc-cCChhHHHH
Q 035503 326 NFYSKVGLLEDAEVVFSRMVERDIV-TWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII-LRDVVLWNT 403 (788)
Q Consensus 326 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~ 403 (788)
....-.|.++.+++++..++..... +... +.+....+ ...+++-..+..... .+++.+|..
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~-------------ntpvekLl~~cksl~e~~~s~~l~a 209 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD-------------NTPVEKLLNMCKSLVEAPTSETLHA 209 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC-------------CchHHHHHHHHHHhhcCCChHHHHH
Confidence 4445556666666666655432110 0000 11111111 112222222222222 367777777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCC
Q 035503 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483 (788)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 483 (788)
+++.-...|+.+.|..++.+|.+.|++.+..-|-.|+-+ .++..-++.++..|.+.|+.|+..|+.-.+..+..+|.
T Consensus 210 ~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 210 VLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777788888888888888887777776666555544 67777777777777777888887777766666655443
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-----chHH-----HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVA-----SLRN-----GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (788)
...+. .| .+....+.+-...-...| .++. ....+.+..-.|......+|..... ...+|+
T Consensus 287 t~~~~--------e~-sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk 356 (1088)
T KOG4318|consen 287 TKYGE--------EG-SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGK 356 (1088)
T ss_pred hhhcc--------cc-cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCC
Confidence 21111 11 111111111111111111 1100 1111111111233222222222222 222455
Q ss_pred HHHHHHHHhhCCC-------CChhhHHHHHHHHHh----------------------CCCHHHHHHHHHHH---------
Q 035503 554 IHQAKRVFDISPS-------KELPVYNAMISGYAM----------------------HGLAVEALALFKNL--------- 595 (788)
Q Consensus 554 ~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~----------------------~g~~~~A~~~~~~m--------- 595 (788)
-++..++...+.. .++..+..++.-|.+ .....+..++....
T Consensus 357 ~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~l 436 (1088)
T KOG4318|consen 357 GEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQL 436 (1088)
T ss_pred CchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHH
Confidence 5555555443332 122222222222211 11111111111111
Q ss_pred ---HH----cCCCC-------CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 035503 596 ---QQ----KGIDP-------DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 596 ---~~----~~~~p-------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
.. ....| =...-+.++..|+..-+..+++..-+.. ++.-+ ...|..|++.+....+.++|..
T Consensus 437 v~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkle~Al~ 512 (1088)
T KOG4318|consen 437 VGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKLEYALS 512 (1088)
T ss_pred hhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHHHHHHh
Confidence 00 00111 0112233344444444444444322222 22122 2577889999999999999999
Q ss_pred HHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 662 VILTMPCD-----PDAHIIGSLLSTCVKSNETELAEYISEHLLQL---EPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 662 ~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
+.++.... -|..-+..+.+.+.+.+....+..+++...+. .|.-....+.+.+.....|+.+.-.++.+-+.
T Consensus 513 ~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 513 FVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred chhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 99988432 33445667778888888888888888877663 34445567777777888999999999999888
Q ss_pred HCCCccCCceeE
Q 035503 734 EKGLRKNPGCSW 745 (788)
Q Consensus 734 ~~~~~~~~~~~~ 745 (788)
..|+.. .|..|
T Consensus 593 slgl~e-tgPl~ 603 (1088)
T KOG4318|consen 593 SLGLSE-TGPLW 603 (1088)
T ss_pred Hhhhhh-cccce
Confidence 888755 34444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-12 Score=132.85 Aligned_cols=285 Identities=11% Similarity=-0.008 Sum_probs=174.5
Q ss_pred cCChHHHHHHHHhcccC--Ch-hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHH--HHHHHHHhcCCHHHHHH
Q 035503 380 CERIDNAKQVFNSIILR--DV-VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWN--SVILGFLRNGQMNEAKD 454 (788)
Q Consensus 380 ~~~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~ 454 (788)
.|+++.|.+.+...... ++ ..|........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544322 11 22222233335555566666666555543 33332221 22344555555666655
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC
Q 035503 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 455 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 534 (788)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..+ ......+-
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~------------------------ 228 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE------------------------ 228 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH------------------------
Confidence 555554442 2234445555555555555555555555555543221 11111000
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
...+..++.......+.+...++++.+++ .++.....+...+...|+.++|.+.+++.... .|+.... ++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 01222233333344455666666666654 46667888889999999999999999888774 4444322 23
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 689 (788)
.+....++.+++++..+...+. .|+ +..+..++..+.+.|++++|.+.|+++ ...|+...+..+..++...|+.+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 3445568999999999988753 354 556679999999999999999999988 56789888889999999999999
Q ss_pred HHHHHHHHHHhcC
Q 035503 690 LAEYISEHLLQLE 702 (788)
Q Consensus 690 ~A~~~~~~~~~~~ 702 (788)
+|..+|++.+.+.
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-09 Score=109.74 Aligned_cols=537 Identities=13% Similarity=0.179 Sum_probs=313.0
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHH-CCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHH
Q 035503 148 FSWAAIIGLNCRVGLSEKALIGFVEMQE-DGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDM 226 (788)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 226 (788)
..|-.-+..+..+|+.-.....|..... ..+......|...+.-....+-++.+..+++..++.. +....--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 3566666777777777777777776543 2334445566777776667777777777777766543 3334556666
Q ss_pred hHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh---HHH
Q 035503 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALD---EGK 303 (788)
Q Consensus 227 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~ 303 (788)
+++.+++++|.+.+..+...+... .+.| +.+...|..+.+..++.-+.- ...
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~--------sk~g-----------------kSn~qlw~elcdlis~~p~~~~slnvd 233 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFV--------SKKG-----------------KSNHQLWLELCDLISQNPDKVQSLNVD 233 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhh--------hhcc-----------------cchhhHHHHHHHHHHhCcchhcccCHH
Confidence 677777777777776664433210 1111 111222222222222211111 111
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCC--CchhHHHHHHHHHHcCCCchhHHHHHHHHH-hhc
Q 035503 304 QAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVER--DIVTWNLLIASYVQSGQSDVVVASSIVDMY-AKC 380 (788)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~~~~~~l~~~~-~~~ 380 (788)
.+++..+..-...--..|+.|.+.|++.|.+++|..+|++..+. .+..++.+...|.+-. .......+.+- ...
T Consensus 234 aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE---E~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 234 AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE---ESCVAAKMELADEES 310 (835)
T ss_pred HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH---HHHHHHHHhhhhhcc
Confidence 12222211111111346788888888888888888888776543 2223444444444322 11112222210 011
Q ss_pred ------CChHHHHHHHHhcccC---------------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc------h
Q 035503 381 ------ERIDNAKQVFNSIILR---------------DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN------I 433 (788)
Q Consensus 381 ------~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~------~ 433 (788)
-+++-.+..|+.+... ++..|..-.. ...|+..+-...+.++... +.|. .
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 1233344444444321 3333433322 3457788888889888875 3332 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC---------
Q 035503 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN---LITWTTLISGLTQNSCGNEAILFFQEMLETGIKP--------- 501 (788)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--------- 501 (788)
..|..+...|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+.+++......-.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3577788889999999999999999866533221 3456666666678889999999988876421111
Q ss_pred --------CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC----CCh
Q 035503 502 --------STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS----KEL 569 (788)
Q Consensus 502 --------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~ 569 (788)
+...|...++.-...|-++....+++.++...+ .++.+....+..+....-++++.++|++-.. |++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 223455666666678899999999999999988 6777777777788888889999999997654 444
Q ss_pred -hhHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH--hhccCcHHHHHHHHHhcHhhcCCCCC--cc
Q 035503 570 -PVYNAMISGYAM---HGLAVEALALFKNLQQKGIDPDSITFTNILNA--CSHAGLVNEGLELFVGMFSDHQVKPS--ME 641 (788)
Q Consensus 570 -~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~--~~ 641 (788)
..|+..+.-+.+ .-..+.|..+|++.++ |.+|...-+..|+.+ -..-|....|+.+|+++.. ++++. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 367765554443 3467899999999998 666765544444443 2345888899999998754 44443 23
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-CCchHHHHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHI---IGSLLSTCVKSNETELAEYISEHLLQL-EPD-NPGNYVALSNA 715 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~ 715 (788)
.|+..+.--...=-+..-.++|+++ ..-|+..+ .......-.+.|..+.|+.+|...-++ +|. ++..|...-..
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 4443222111110111122233333 11244332 222334445678888888888887775 454 56677777777
Q ss_pred HHhCCCcH
Q 035503 716 YAASGRWN 723 (788)
Q Consensus 716 ~~~~g~~~ 723 (788)
-.+.|+-+
T Consensus 704 EvrHGned 711 (835)
T KOG2047|consen 704 EVRHGNED 711 (835)
T ss_pred HHhcCCHH
Confidence 77788743
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-11 Score=127.57 Aligned_cols=283 Identities=12% Similarity=0.004 Sum_probs=134.2
Q ss_pred HcCChhHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh--hhHHHHHHHHHhCCCchH
Q 035503 410 DLGRSGEASRLFYQMQLEGISPNII-SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL--ITWTTLISGLTQNSCGNE 486 (788)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~ 486 (788)
..|+++.|.+.+.+..+. .|+.. .+.....++.+.|+++.|...+.+..+.. |+. ...-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 346666666666555443 23322 22233344555566666666666654331 222 122223555555666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHH-HHHHHH---HH----cCCHHHHH
Q 035503 487 AILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT-SLVDMY---AK----CGNIHQAK 558 (788)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~----~g~~~~A~ 558 (788)
|...++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+.. +...+. .-..++ .. ....+...
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 666666666532 223344555555555666666666666665555442 222111 111111 11 11122223
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 559 RVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 559 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
+.++..+. .++..+..++..+...|+.++|.+.+++..+.. ||.....
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~--------------------------- 300 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAIS--------------------------- 300 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccch---------------------------
Confidence 33333332 244444555555555555555555555554432 2221100
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchH
Q 035503 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-A--HIIGSLLSTCVKSNETELAEYISE--HLLQLEPDNPGNY 709 (788)
Q Consensus 636 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~ 709 (788)
............++.+++++.+++. ...|+ + ....++++.|.+.|++++|++.++ .+++..|++. .+
T Consensus 301 ------~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~ 373 (409)
T TIGR00540 301 ------LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DL 373 (409)
T ss_pred ------hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HH
Confidence 0000111111223444444444443 11222 2 445566666777777777777777 4555666633 35
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
..++.++.+.|+.++|.+++++.+.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5777777777777777777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-11 Score=116.08 Aligned_cols=220 Identities=10% Similarity=0.026 Sum_probs=176.4
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 035503 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557 (788)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (788)
+.-.|+.-.|.+-|+..++....++ ..|..+...|....+.++..+.|..+...++ .++.+|..-++++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHH
Confidence 4456888999999999998543222 2277777889999999999999999999999 7888999999999999999999
Q ss_pred HHHHhhCCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc
Q 035503 558 KRVFDISPSKEL---PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH 634 (788)
Q Consensus 558 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 634 (788)
..-|++...-++ ..|-.+.-+..+.++++++...|++.+.+ ++.-+..|+.....+...++++.|.+.|+.++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai--- 489 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI--- 489 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---
Confidence 999998776444 56667777778899999999999998876 44456788888889999999999999999887
Q ss_pred CCCCC-------cchH--HHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 635 QVKPS-------MEHF--GCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 635 ~~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
.+.|+ +..+ ..++..-. .+++..|..+++++ ..+|.. ..+..++..-.++|+.++|+++|++...+-.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45554 1111 12222223 38999999999998 566665 4688899999999999999999999988755
Q ss_pred C
Q 035503 704 D 704 (788)
Q Consensus 704 ~ 704 (788)
.
T Consensus 569 t 569 (606)
T KOG0547|consen 569 T 569 (606)
T ss_pred h
Confidence 5
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-12 Score=130.51 Aligned_cols=254 Identities=13% Similarity=0.083 Sum_probs=153.3
Q ss_pred CCCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPST-TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKR 559 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 559 (788)
.|+++.|.+.+.+..+. .|++ ..+.....+....|+.+.+...+..+.+..+.+...+....+..+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444432 2322 12222333444455555555555555444432222333334566666666666666
Q ss_pred HHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHH-HHHH---HhhccCcHHHHHHHHHhcHh
Q 035503 560 VFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT-NILN---ACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 560 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~---~~~~~g~~~~A~~~~~~~~~ 632 (788)
.++.+.+ .+...+..+...+...|++++|.+++.++.+.+.. +...+. .-.. .....+..+++.+.+..+..
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6665543 23445666677777777777777777777776533 222221 1111 11233333333444544443
Q ss_pred hc--CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 633 DH--QVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHI---IGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 633 ~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
.. ..+.+...+..++..+...|+.++|.+.+++. ...||... ...........++.+.+++.+++.++..|+++
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 21 11136778888999999999999999999888 33455432 12222223445888999999999999999999
Q ss_pred --chHHHHHHHHHhCCCcHHHHHHHHH--HHHCCC
Q 035503 707 --GNYVALSNAYAASGRWNEVSQVRDI--MKEKGL 737 (788)
Q Consensus 707 --~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~ 737 (788)
.....+++++.+.|+|++|.++|++ ..+..+
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 8999999999999999999999995 544443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-10 Score=119.81 Aligned_cols=367 Identities=14% Similarity=0.131 Sum_probs=223.6
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhcccC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh-HHHHHHH
Q 035503 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILR---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNII-SWNSVIL 441 (788)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~ 441 (788)
++.+|..+.-....+|+++.+.+.|++...- ....|+.+...+...|....|..+++.-......|+.. .+...-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 4445556666666667777777777665432 33456677777777777777777776654432223322 2222223
Q ss_pred HHH-hcCCHHHHHHHHHHhhh--CCC--CCChhhHHHHHHHHHhC-----------CCchHHHHHHHHHHhCCCCCCHHH
Q 035503 442 GFL-RNGQMNEAKDMFLQMQS--LGV--QPNLITWTTLISGLTQN-----------SCGNEAILFFQEMLETGIKPSTTT 505 (788)
Q Consensus 442 ~~~-~~g~~~~A~~~~~~~~~--~g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~ 505 (788)
.|. +.+.+++++.+-.++.+ .+. ......|..+.-+|... ....++++.+++..+.+ +-|+..
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~ 480 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLV 480 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchH
Confidence 333 34556666665555533 111 11223343343333211 12235666666666543 223334
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC---------------
Q 035503 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KE--------------- 568 (788)
Q Consensus 506 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--------------- 568 (788)
...+.--|...++++.|.+..+++++.+...+...|..|+-.+...+++.+|+.+.+.... ++
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 4444444666677777777777777776667777777777777777777777777653322 00
Q ss_pred --h----hhHHHHHHHHH-----------------------hCCCHHHHHHHHHHHH--------HcC---------CC-
Q 035503 569 --L----PVYNAMISGYA-----------------------MHGLAVEALALFKNLQ--------QKG---------ID- 601 (788)
Q Consensus 569 --~----~~~~~l~~~~~-----------------------~~g~~~~A~~~~~~m~--------~~~---------~~- 601 (788)
. .+...++.... ..++..+|.+..+++. ..| +.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 0 01111111111 1112222222222211 111 11
Q ss_pred -CCH------hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 035503 602 -PDS------ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA 672 (788)
Q Consensus 602 -p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 672 (788)
|+. ..|......+...+..++|...+.++. ++.|- ...|...+..+...|..+||.+.|..+ ..+|+.
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 121 123334445778888899988888775 44454 667777888899999999999988777 566765
Q ss_pred -HHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 -HIIGSLLSTCVKSNETELAEY--ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 -~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+..+++..+.+.|+...|.. ++..+++++|.++.+|+.||.++.+.|+.++|.+.|+...+..
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 578889999999999888888 9999999999999999999999999999999999999987765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-11 Score=113.18 Aligned_cols=311 Identities=14% Similarity=0.109 Sum_probs=192.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC--hhhHHHHHHHHHhCCCchHH
Q 035503 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG-VQPN--LITWTTLISGLTQNSCGNEA 487 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 487 (788)
.++.++|.++|-+|.+.. +.+..+-.+|.+.|-+.|..|.|+++.+.+.++. .+.+ ......|..=|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467778888888777642 2334455566777777777787877777775541 1111 12223344556666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 035503 488 ILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567 (788)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (788)
..+|..+.+.+ .--......++..|-...+|++|+.+-.++.+.+..+... .+++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq--------------------- 181 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ--------------------- 181 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH---------------------
Confidence 77777666532 1123344555555555556666655555555554422111 1111
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC--cchHH
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS--MEHFG 644 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~ 644 (788)
.|.-|...+....+.+.|..++++..+.+ |+. ..-..+.+.....|+++.|++.++.+.+. .|+ +++..
T Consensus 182 ---fyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~ 253 (389)
T COG2956 182 ---FYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLE 253 (389)
T ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHH
Confidence 23334455556677777888888776653 433 33334555677788888888888877643 243 55666
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH---hCC
Q 035503 645 CVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA---ASG 720 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g 720 (788)
.|..+|...|+.++.+.++.++ ...+.......+...-....-.+.|...+.+-+...|+ ...+..|..... ..|
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhcccccc
Confidence 7788888888888888887776 34455555555665555555567777777777788888 445555555443 356
Q ss_pred CcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEE
Q 035503 721 RWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFV 756 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (788)
++.+...+++.|....++..|.+.....+-..+.|.
T Consensus 333 ~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 333 RAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred chhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 788889999999998888888776666655555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=136.16 Aligned_cols=255 Identities=12% Similarity=0.115 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLG-VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|...++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44666677777777777775543332 233455555566666677777777777777776432 233444444444 567
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCCHHHHHHH
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-----SKELPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
+++++|..+.....+.. +++..+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776665543 344556667777888888888888876532 24566788888889999999999999
Q ss_pred HHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--C
Q 035503 592 FKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--C 668 (788)
Q Consensus 592 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 668 (788)
+++.++. .| |......++..+...|+.+++.++++...+.. +.++..+..++.+|...|+.++|+.++++.. .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9998886 45 46677788888899999999888888876542 4556667788999999999999999998882 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
+.|+.....++.++...|+.++|..+.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44677788888999999999999999888765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-09 Score=103.29 Aligned_cols=296 Identities=13% Similarity=0.069 Sum_probs=220.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHHhCCC
Q 035503 406 AAYADLGRSGEASRLFYQMQLE-GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN-LITWTTLISGLTQNSC 483 (788)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~ 483 (788)
.+++..++...+...+-.+... -++-|......+...+...|+.++|+..|++.... .|+ ..........+.+.|+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccC
Confidence 3445556666666655554443 34566777888999999999999999999998665 111 2222233445678888
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
.++-..+...+.... .-+...|..-+......++++.|..+-++.++.++ .+...+..-+.++...|+.++|.-.|+.
T Consensus 282 ~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHH
Confidence 988888888877531 23333444444455667889999999999998887 6777777788899999999999999986
Q ss_pred CCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HHh-hccCcHHHHHHHHHhcHhhcCCCC
Q 035503 564 SPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL-NAC-SHAGLVNEGLELFVGMFSDHQVKP 638 (788)
Q Consensus 564 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~g~~~~A~~~~~~~~~~~~~~p 638 (788)
... -+..+|..|+.+|...|++.+|..+-+..... +..+..+...+. ..| ...-.-++|.+++++.+ .+.|
T Consensus 360 Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P 435 (564)
T KOG1174|consen 360 AQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINP 435 (564)
T ss_pred HHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCC
Confidence 543 46679999999999999999998887775543 344566665553 233 33344578888888765 6778
Q ss_pred C-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 639 S-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 639 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
+ ......++..+.+.|+.++++.++++. ..-||....+.|+......+.+++|...|..++.++|++..+.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 7 566678889999999999999999887 4568888999999999999999999999999999999974443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=119.08 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=163.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
.....+..++..|...|++++|...++.... .+...+..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456777888899999999999999986543 345677888899999999999999999988764 335566777788
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 690 (788)
.+...|++++|...++++............+..++..+...|++++|...+++. ...| +...+..++..+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998753222223456778899999999999999999887 3333 45678888999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
|...++++++..|+++..+..++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998988999999999999999999999998877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-07 Score=94.00 Aligned_cols=615 Identities=14% Similarity=0.124 Sum_probs=367.1
Q ss_pred CccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH--------HHhccCCCchhHHHHHHHHHHhCCCCC
Q 035503 42 SLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELL--------QGCVYKRDMYTGQQIHARILKNGDFFA 113 (788)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--------~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (788)
-++.+|-..|..-.. ...++-..+|++..+.= +-+-..|..-| ..|.....++....-|+..+.. +-
T Consensus 25 ~svk~W~RYIe~k~~-sp~k~~~~lYERal~~l-p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~---mH 99 (835)
T KOG2047|consen 25 FSVKCWLRYIEHKAG-SPDKQRNLLYERALKEL-PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVF---MH 99 (835)
T ss_pred hhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH---Hh
Confidence 345567666665444 23334555666655422 22223332222 1122222333344444443332 12
Q ss_pred CchhHhhHHHHHHhccCChHHHHHHhccCCC-----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 035503 114 RNEYVETKLVVFYAKCDALDVASRLFCRLRV-----KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNV 188 (788)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (788)
--+.+|-.-+....++|++..-+..|+..-. .-...|...+...-..|-++-++.+|++..+. .|. .-.--
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHH
Confidence 3345667777777889999999888876421 23456888888888899999999999998874 233 35666
Q ss_pred HHHhcccCCchHHHHHHHHHHHHc------CCCchhhhhHHHHHhHhcCChH---HHHHHHhcCCCC--C--cchHHHHH
Q 035503 189 LKACGALGWVGFGRAVHGYVLKVG------FDGCVFVASSLIDMYGKCGDLE---EARKVFDGMIAR--N--VVAWNSMI 255 (788)
Q Consensus 189 l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~--~--~~~~~~li 255 (788)
|.-++..+++++|.+.+..++... .+.+...|+-+.+...+.-+.- ....+++.+..+ | ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 777888999999999888876432 2566777887777776654332 234455555443 2 35899999
Q ss_pred HHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChh
Q 035503 256 VGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLE 335 (788)
Q Consensus 256 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 335 (788)
.-|.+.|.++.|.++|++.... .....-|..+.++|+.....-.+..+- .....+..+. ..-+++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~ 320 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLE 320 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHH
Confidence 9999999999999999998765 345555666777766433222221111 0000111100 111334
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc---C------ChhHHHHHHH
Q 035503 336 DAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---R------DVVLWNTLLA 406 (788)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~------~~~~~~~l~~ 406 (788)
-...-|+.+....+...|.. +++..+.+...+..-+.. ..|+..+-...+.+... | -...|..+.+
T Consensus 321 ~~~a~~e~lm~rr~~~lNsV---lLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSV---LLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHhccchHHHHH---HHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHH
Confidence 44555555554444333332 223333333333333332 23455555555554431 1 1234777888
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----------C-------
Q 035503 407 AYADLGRSGEASRLFYQMQLEGISPN---IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQ----------P------- 466 (788)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~----------~------- 466 (788)
.|-..|+.+.|..+|++......+.- ..+|......-.+..+++.|..+.+......-. |
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88888888888888888776543322 334555555566677777777777765322111 1
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 035503 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP-TPIVTSLV 545 (788)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 545 (788)
+...|...++..-..|-++....+++++++..+ .++........-+..+.-++++.+++++-+..-..|. ..+|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 234566667777777888888899999988653 3444444444455667778888888887666544333 34556555
Q ss_pred HHHHH---cCCHHHHHHHHhhCCCCChhh-----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhh
Q 035503 546 DMYAK---CGNIHQAKRVFDISPSKELPV-----YNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACS 615 (788)
Q Consensus 546 ~~~~~---~g~~~~A~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~ 615 (788)
.-+.+ .-+++.|..+|+...+.-++. |-.....--..|....|+++|++.-.. +++.. ..|+..|.--.
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 54443 246889999998776633322 222233334578889999999996543 44432 45666665322
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCCcchH---HHHHHHHhhcCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPSMEHF---GCVVNLLSRCGNLDEALRVILTMP--CDP--DAHIIGSLLSTCVKSNET 688 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~ 688 (788)
..=-+.....+|+++++. -|+...- ...+++=.+.|..+.|..++.-.. ++| +...|.+.-.--.++||-
T Consensus 634 e~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 222233556778887753 3553332 256677789999999999987763 333 456788888888999994
Q ss_pred HH
Q 035503 689 EL 690 (788)
Q Consensus 689 ~~ 690 (788)
+-
T Consensus 711 dT 712 (835)
T KOG2047|consen 711 DT 712 (835)
T ss_pred HH
Confidence 43
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-09 Score=99.15 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=106.7
Q ss_pred CHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 553 NIHQAKRVFDISPS-----KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 553 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.++-|.+.|+-.-. ..++.-.++..++.-..++++.+-+++....-- ..|......+..+.+..|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 34555666654332 223345566666666777788887777766642 333333334667788888888888888
Q ss_pred HhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 628 VGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS-LLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 628 ~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
-++. ...+ -+..+|. .|+.+|.+.|+++-|.+++-++..+.+..+... ++..|.+.+.+=-|-+.|..+-.++|.
T Consensus 417 ~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~- 493 (557)
T KOG3785|consen 417 IRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT- 493 (557)
T ss_pred hhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-
Confidence 7663 1122 2334444 777888888888888888877765555544443 445688888888888888888788887
Q ss_pred CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|+.| .|+...-..+|+.+....
T Consensus 494 pEnW---------eGKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 494 PENW---------EGKRGACAGLFRQLANHK 515 (557)
T ss_pred cccc---------CCccchHHHHHHHHHcCC
Confidence 4433 344444455555554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-09 Score=104.76 Aligned_cols=288 Identities=17% Similarity=0.139 Sum_probs=135.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHH
Q 035503 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 490 (788)
.|++..|+++..+..+.+-.| ...|..-..+.-..|+.+.+-.++.++.+..-.++...+-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544443221 2233333344444555555555555554432233344444444445555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh
Q 035503 491 FQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570 (788)
Q Consensus 491 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 570 (788)
++++.+.+ +-..........+|.+.|++.....+...+.+.+.-.+...-..= ..
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le------------------------~~ 230 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE------------------------QQ 230 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH------------------------HH
Confidence 55555432 222334444444455555555555555554444432221111000 01
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
+|+.+++-....+..+.-...|++.-.+ .+.+...-..++.-+...|+.++|.++.++..+. +..|+ ...++ ..
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~ 304 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PR 304 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hh
Confidence 3444444333333333333344433222 1223333334444455555555555555554433 22222 11111 11
Q ss_pred hhcCChHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 651 SRCGNLDEALRVI----LTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 651 ~~~g~~~~A~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
.+.++.+.=++.. ...+.. +..+.+|+..|.+++.+.+|...++.+++..|+ ...|..++.+|.+.|+..+|.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHH
Confidence 2233333322222 222322 246667777777777777777777777777776 667777777777777777777
Q ss_pred HHHHHHH
Q 035503 727 QVRDIMK 733 (788)
Q Consensus 727 ~~~~~~~ 733 (788)
+.+++.+
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 7777665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-09 Score=101.95 Aligned_cols=364 Identities=13% Similarity=0.029 Sum_probs=246.3
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhcccCChhH-HHHHHHHHHHcC-ChhH--------------HHHHHHHHHHcC-
Q 035503 366 DVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVL-WNTLLAAYADLG-RSGE--------------ASRLFYQMQLEG- 428 (788)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~g-~~~~--------------a~~~~~~m~~~~- 428 (788)
+.......+.+|...++-+.|...+...++.-... .|.++..+.+.| +..+ |++.+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 44455667778888888888888888776442222 233333222222 1111 122222222222
Q ss_pred --------------CCCchhHHHHHHHHHH--hcCCHHHHHHHHHHhh-hCCCCCChhhHHHHHHHHHhCCCchHHHHHH
Q 035503 429 --------------ISPNIISWNSVILGFL--RNGQMNEAKDMFLQMQ-SLGVQPNLITWTTLISGLTQNSCGNEAILFF 491 (788)
Q Consensus 429 --------------~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 491 (788)
+.|+..+....+.++. ..++...|...+-.+. ..-++.|+.....+.+++...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 2333334444444443 3455555555555542 2335667888899999999999999999999
Q ss_pred HHHHhCCCCCCHHHH-HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---C
Q 035503 492 QEMLETGIKPSTTTI-TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---K 567 (788)
Q Consensus 492 ~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 567 (788)
++... +.|+..+- -...-.+...|+.+....+...+....- .....|..-+.......+++.|+.+-++..+ .
T Consensus 256 e~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r 332 (564)
T KOG1174|consen 256 SSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR 332 (564)
T ss_pred HHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc
Confidence 98876 44554322 2222234566777777777776665442 2233333344555567788888888876665 4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHH
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCV 646 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 646 (788)
++..+-.-...+...|+..+|.-.|+..+.. .| +...|..|+.+|...|.+.+|.-.-+...+. ++.+..+...+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~ 408 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLF 408 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhh
Confidence 4556666667888999999999999997764 44 6789999999999999999998887777653 33455555544
Q ss_pred H-HHH-hhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCc
Q 035503 647 V-NLL-SRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 647 ~-~~~-~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
+ ..+ -...--++|.+++++. ..+|+. ...+.+...|...|.++.++.++++.+...|| ...+..|++++...+.+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEP 487 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhH
Confidence 3 222 2334457899999887 567774 57788889999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHHCCC
Q 035503 723 NEVSQVRDIMKEKGL 737 (788)
Q Consensus 723 ~~A~~~~~~~~~~~~ 737 (788)
.+|.+.|...+...+
T Consensus 488 Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999998877665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-09 Score=103.88 Aligned_cols=196 Identities=12% Similarity=0.099 Sum_probs=133.1
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh
Q 035503 396 RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI-------ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL 468 (788)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 468 (788)
.++........+|.+.|++.+...++..+.+.|.-.|. .+|+.++.-....+..+.-...++..... ..-++
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p 263 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDP 263 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcCh
Confidence 35556667777777778888888888887777655443 35666666666666666666677766332 23356
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++.+.-++..+.-.+..+ .++..+..|+..|
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~ 338 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLA 338 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHH
Confidence 6666778888888999999999888888776665 2333456667777777777777777666 4556777777777
Q ss_pred HHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 549 AKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
.+.+.|.+|...|+...+ ++..+|+.+.+++.+.|+..+|.+.+++...
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 777777777777765443 5555666666666666666666666666443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-10 Score=102.76 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=141.5
Q ss_pred hhcCChHHHHHHHHhcccCChhHH---HHHHHHHHHcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHH
Q 035503 378 AKCERIDNAKQVFNSIILRDVVLW---NTLLAAYADLGRSGEASRLFYQMQLEGISPN---IISWNSVILGFLRNGQMNE 451 (788)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~ 451 (788)
.-.++.++|.++|-+|.+.|..+| -++.+.|.+.|..|.|+.+++.+.+..--+. ....-.|..-|...|-+|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 335788999999999988777665 5788899999999999999999987521111 1233456666999999999
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH----HHHHHHHHhhccCchHHHHHHHH
Q 035503 452 AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT----TITCALSACTDVASLRNGRAIHG 527 (788)
Q Consensus 452 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~ 527 (788)
|+.+|..+.+.|. .-......|+..|-...+|++|+++-.++.+.+-.+... -|.-+...+....+++.|...++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999987532 245677889999999999999999999998865443322 22333344444555666666666
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh----hHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP----VYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
++.+.++ ....+-..+++.+...|++..|.+.++.+.+.|+. +...|..+|.+.|+.++.+..+.++.+
T Consensus 205 kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666555 33344444445555555555555544444443332 233344444444444444444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-11 Score=112.18 Aligned_cols=235 Identities=17% Similarity=0.114 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035503 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512 (788)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (788)
...-+.+..+|.+.|.+.+|...|+.-.+. .|.+.||-.|-.+|.+.++++.|+.++.+-++ ..|-.+|+.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l----- 293 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYL----- 293 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhh-----
Confidence 333455556666666666666666655444 34555566666666666666666666666554 234444332
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEAL 589 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 589 (788)
...+..+...++.++|.++|+...+ .++.+...+...|...++++-|+
T Consensus 294 -----------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 294 -----------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred -----------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHH
Confidence 2223333333334444444433222 12223333344445555555555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 035503 590 ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCD 669 (788)
Q Consensus 590 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 669 (788)
.+|+++++.|+ -+...|..+.-+|...+++|-++.-|+++... .-.| .
T Consensus 345 ryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~------------------------------~ 392 (478)
T KOG1129|consen 345 RYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQP------------------------------G 392 (478)
T ss_pred HHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCc------------------------------c
Confidence 55555555552 24444444444555555555555554444321 0001 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.-..+|.++.......||+..|.+.|+-++.-+|++.+.+++|+.+-.+.|+.++|..+++......+
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 12458999999999999999999999999999999999999999999999999999999998876553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-08 Score=105.44 Aligned_cols=495 Identities=14% Similarity=0.080 Sum_probs=284.2
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHh---cccCCchHH-------------------HHH----HHHHHHHc
Q 035503 159 RVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKAC---GALGWVGFG-------------------RAV----HGYVLKVG 212 (788)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~~----~~~~~~~~ 212 (788)
..+.+++++.-+.....++...+..++..+...+ ...++.+++ ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777766666666666555544332 223333333 111 11111223
Q ss_pred CCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCC-HHHHHH
Q 035503 213 FDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT-RVSVTS 288 (788)
Q Consensus 213 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 288 (788)
+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.|+ ...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455677788888888888888888888887643 2445788888888888888888888887655432343 333333
Q ss_pred HHHHhc-CcCChhHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 035503 289 ILSASA-NLDALDEGKQAHAVAVING--M--ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363 (788)
Q Consensus 289 ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 363 (788)
.-+.|. +.+..+++...-..++... . ......|..+.-+|...- .+.+..+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------~~a~~~s------------ 454 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------RQANLKS------------ 454 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------hcCCChH------------
Confidence 334444 3566777766666665521 0 111222222222222110 0000000
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHHhccc---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 035503 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440 (788)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 440 (788)
. +.....+++..+++..+ .|+...-.+.--|+..++.+.|.+..++..+.+-.-+...|..|.
T Consensus 455 ---------e-----R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLA 520 (799)
T KOG4162|consen 455 ---------E-----RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLA 520 (799)
T ss_pred ---------H-----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 0 00012344444444432 233222233344566778888888888888776667777888788
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC-CCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCch
Q 035503 441 LGFLRNGQMNEAKDMFLQMQSL-GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519 (788)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 519 (788)
-.+...+++.+|+.+.+...+. |. |......-+..-..-++.++|+.....++.. --+...+...+. .|.
T Consensus 521 LvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~- 591 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGK- 591 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhh-
Confidence 8888888888888888776433 22 2222222223333467777777777776541 000011111010 111
Q ss_pred HHHHHHHHHHHH--cCCCCChhHHHHHHHHHHHc---CCHHHHHHHHhhCCCCCh------hhHHHHHHHHHhCCCHHHH
Q 035503 520 RNGRAIHGYLIR--HDLCLPTPIVTSLVDMYAKC---GNIHQAKRVFDISPSKEL------PVYNAMISGYAMHGLAVEA 588 (788)
Q Consensus 520 ~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A 588 (788)
..+....+.- ..+...+..+..+....... -..+..+..+...+.++. ..|......+.+.++.++|
T Consensus 592 --~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a 669 (799)
T KOG4162|consen 592 --LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEA 669 (799)
T ss_pred --hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 1111111000 11111222222222222111 111111122222222332 2566778888999999999
Q ss_pred HHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHH--HHH
Q 035503 589 LALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALR--VIL 664 (788)
Q Consensus 589 ~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~ 664 (788)
...+.+.... .| ....|......+...|..++|.+.|.... -+.|+ +.....++.++.+.|+..-|.. ++.
T Consensus 670 ~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 670 RSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred HHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 9888886553 34 44556666667888999999999998776 67787 6778899999999998777766 776
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 665 TM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 665 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+ ..+| ++..|..++....+.|+.++|-.+|.-++++++.+|.
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 66 4444 4679999999999999999999999999999988764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-07 Score=96.82 Aligned_cols=565 Identities=13% Similarity=0.084 Sum_probs=283.6
Q ss_pred hhHHHHHHhccCChHHHHHHhccCCC--CCcc-----cHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 035503 119 ETKLVVFYAKCDALDVASRLFCRLRV--KNVF-----SWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKA 191 (788)
Q Consensus 119 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 191 (788)
+..+...|.+.|=+..|++.+..+.. +.++ .-..+ ..|.-.-.++++++.++.|...+++.|.-+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56677778888888888888876642 1111 11112 2344445678888999999888777776665555555
Q ss_pred hcccCCchHHHHHHHHHHHH-----------cCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCC---------------
Q 035503 192 CGALGWVGFGRAVHGYVLKV-----------GFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIA--------------- 245 (788)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------- 245 (788)
|+..=..+...++|+..... ++..|+.+.-..|.+.|+.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 55444444555555554432 3466777788889999999999999888876410
Q ss_pred ----C-----CcchHHH-------------HHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHH-------------HH
Q 035503 246 ----R-----NVVAWNS-------------MIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS-------------IL 290 (788)
Q Consensus 246 ----~-----~~~~~~~-------------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-------------ll 290 (788)
| |...+-. .|..|.+.=++...-.+...+.. +.-+....-. |.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD--~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD--VDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc--CCCcHHHHHHHHHHHhccCChHHHH
Confidence 0 1111111 22333333222222222222221 1112222222 22
Q ss_pred HHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCC-----
Q 035503 291 SASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQS----- 365 (788)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----- 365 (788)
.-+.+.+++..-...++..+..| ..|..++|+|...|+..++-.+- ++ ..++.--+..+..||....|
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fL----keN~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FL----KENPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hc----ccCCcchhhHHhhhhcccCCceEEE
Confidence 23334455555566666666667 45788899999888877654321 11 11111111122233333211
Q ss_pred ----------------chhHHHHHHHHHhhcCChHHHHHHHHh-----------cc------cCChhHHHHHHHHHHHcC
Q 035503 366 ----------------DVVVASSIVDMYAKCERIDNAKQVFNS-----------II------LRDVVLWNTLLAAYADLG 412 (788)
Q Consensus 366 ----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~-----------~~------~~~~~~~~~l~~~~~~~g 412 (788)
....+....+.+.+..+.+--.+++.+ .. ..|+.......+++...+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 112344444444444444443333321 11 135556666777777788
Q ss_pred ChhHHHHHHHHHHHcC--CCCchhHHHHHHHH---------------------------HHhcCCHHHHHHHHHHhhhCC
Q 035503 413 RSGEASRLFYQMQLEG--ISPNIISWNSVILG---------------------------FLRNGQMNEAKDMFLQMQSLG 463 (788)
Q Consensus 413 ~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~---------------------------~~~~g~~~~A~~~~~~~~~~g 463 (788)
-..+-++++++..-.+ +.-+...-|.|+-. +...+-+++|..+|++..-
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~-- 1076 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM-- 1076 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc--
Confidence 8888888887776432 11112222333322 3333444555555543211
Q ss_pred CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHH
Q 035503 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543 (788)
Q Consensus 464 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 543 (788)
+....+.||. .-+..++|.++-++. ..+..|..+..+-.+.|.+.+|.+-|-++ .++..|..
T Consensus 1077 ---n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1077 ---NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred ---cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 1111111111 112222222222211 12345555555555555555554444332 34445555
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 621 (788)
.++...+.|+|++-.+.+....+ +.+..=..|+-+|++.++..+-++.. ..||......+.+-|...|.++
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~ 1211 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYE 1211 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhH
Confidence 55555555555555555543332 12222344555555555554433332 1345555555555555555555
Q ss_pred HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-------------------------C--CCCHHH
Q 035503 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-------------------------C--DPDAHI 674 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------------~--~p~~~~ 674 (788)
.|.-+|... ..|..|+..+...|++..|.+.-+++. . --.+.-
T Consensus 1212 aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhade 1281 (1666)
T KOG0985|consen 1212 AAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADE 1281 (1666)
T ss_pred HHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHh
Confidence 554444322 133444444444555444444433331 0 011234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
...++..|...|-+++-+.+++.++.++.-+...+..|+-+|.+-. .++-.+.++.
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~L 1337 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 4556666777777888888888888887777777777777776643 3444444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-08 Score=98.36 Aligned_cols=442 Identities=14% Similarity=0.103 Sum_probs=277.1
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 035503 231 GDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAV 310 (788)
Q Consensus 231 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (788)
.++.+|+.+|-+ .|. -...|..|....++++|+.+-+. .|.+.=...-.+.++++...|+-+.|-++
T Consensus 545 kkfk~ae~ifle---qn~--te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el----- 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLE---QNA--TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL----- 611 (1636)
T ss_pred hhhhHHHHHHHh---ccc--HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh-----
Confidence 457777777643 211 13345666666777777766543 22222122223344555555555544332
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChhHHHHHHH--hcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHH
Q 035503 311 INGMELDNVLGSSIINFYSKVGLLEDAEVVFS--RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388 (788)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (788)
..+..--.+.|..|.+.|.+-+|.+.-. +....|......+-.++.+.. .|....+.|-+..++++|.+
T Consensus 612 ----k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~e-----lydkagdlfeki~d~dkale 682 (1636)
T KOG3616|consen 612 ----KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGE-----LYDKAGDLFEKIHDFDKALE 682 (1636)
T ss_pred ----ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhH-----HHHhhhhHHHHhhCHHHHHH
Confidence 1122223456778888888877766542 222233333333344444433 66777777777778888888
Q ss_pred HHHhccc------------C-ChhH-HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 035503 389 VFNSIIL------------R-DVVL-WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454 (788)
Q Consensus 389 ~~~~~~~------------~-~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 454 (788)
.|.+-.. | .+++ -......+...|+++.|+..|-+... ....+.+......+.+|+.
T Consensus 683 ~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ 753 (1636)
T KOG3616|consen 683 CFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAIS 753 (1636)
T ss_pred HHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHh
Confidence 7765421 1 1111 12334455566777777666654322 2334566777888999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC
Q 035503 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 455 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 534 (788)
+++.+.+... ...-|..+.+.|...|+++.|.++|.+.- .+.-.+..|.+.|+++.|.++-.+. .|+
T Consensus 754 ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~ 820 (1636)
T KOG3616|consen 754 ILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGP 820 (1636)
T ss_pred HHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCc
Confidence 9998877632 34557778889999999999999887642 2344567788999999888776554 455
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHH
Q 035503 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD--SITFTNILN 612 (788)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~ 612 (788)
......|..-++-+-+.|++.+|.++|-.+..|+. .|..|-++|..+..+++.++- .|+ ..|...+..
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAK 890 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHH
Confidence 56667777777888889999999999887777764 367788899999888888772 333 356667777
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC--CHH--HHH------HHHHHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP--DAH--IIG------SLLSTC 682 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~--~~~------~l~~~~ 682 (788)
-+...|+...|...|-++- -|..-+++|...+.+++|.++.+.-.... ... .|- +....+
T Consensus 891 e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkll 960 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLL 960 (1636)
T ss_pred HHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHH
Confidence 7889999999988886652 34556778888888888888776653210 111 121 112233
Q ss_pred HhcCCHHHHHHH------HHHHHh-----cCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 683 VKSNETELAEYI------SEHLLQ-----LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 683 ~~~g~~~~A~~~------~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
-++|-.+.|+.. |+-+++ .....+.++..++..+...|++++|.+.|-..++.+
T Consensus 961 nk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 961 NKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 445555554442 111211 223357788889999999999999988887766654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-07 Score=97.10 Aligned_cols=629 Identities=13% Similarity=0.134 Sum_probs=360.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHH
Q 035503 47 YFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFY 126 (788)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (788)
-+..+..+++.|.+++++-+. .+.|..|+ |-.+++...+ -+.+++.++...+.+.++ +..|.. .++..+
T Consensus 484 p~KVi~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~-~~~die---~I~DlF 552 (1666)
T KOG0985|consen 484 PAKVIQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE-PLADIE---QIVDLF 552 (1666)
T ss_pred cHHHHHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC-CcccHH---HHHHHH
Confidence 356788999999999987665 45677777 5555655544 567777777777766441 222221 222222
Q ss_pred hcc----------------CChHHH---HHHhcc--CCCC---------Cc---ccHHHHHHHHHcCCCchHHHHHHHHH
Q 035503 127 AKC----------------DALDVA---SRLFCR--LRVK---------NV---FSWAAIIGLNCRVGLSEKALIGFVEM 173 (788)
Q Consensus 127 ~~~----------------g~~~~A---~~~~~~--~~~~---------~~---~~~~~li~~~~~~g~~~~A~~~~~~m 173 (788)
... ..+++. .++++. +..| +. .-|..+.+.|.++|-...|++.|.+.
T Consensus 553 me~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 553 MELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred HHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 111 112111 111111 0112 11 23777888999999999999888776
Q ss_pred HHC---CCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCC------
Q 035503 174 QED---GVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI------ 244 (788)
Q Consensus 174 ~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 244 (788)
..- -+..+...-. -+-.+...-.++.+.+.+..|+..++..|..+...+..-|+..=-.+...++|+...
T Consensus 633 ~DIKR~vVhth~L~pE-wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~ 711 (1666)
T KOG0985|consen 633 YDIKRVVVHTHLLNPE-WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLY 711 (1666)
T ss_pred HHHHHHHHHhccCCHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHH
Confidence 331 0111110001 112233445678889999999999988888888888888888777778888888762
Q ss_pred ---------CCCcchHHHHHHHHHHCCChhHHHHHHHHH------------HHcC---CCC-----CHHHHHHHHHHhcC
Q 035503 245 ---------ARNVVAWNSMIVGYVQNGLNEEAIRVFYEM------------TLEG---VEP-----TRVSVTSILSASAN 295 (788)
Q Consensus 245 ---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------------~~~g---~~p-----~~~t~~~ll~~~~~ 295 (788)
..|....-.-|.+.++.|++.+..++.++- ++.. -.| |.+-|..=+-.|.-
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLy 791 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 791 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHH
Confidence 235555566788889999988887766542 1111 111 22222222222222
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHH--------------HHHHhcCCCC-chhHHHHHHHHH
Q 035503 296 LDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAE--------------VVFSRMVERD-IVTWNLLIASYV 360 (788)
Q Consensus 296 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--------------~~~~~~~~~~-~~~~~~li~~~~ 360 (788)
.++...-.+++-+- -+....+.+-..|++ ....++.+ ++.++..+++ .......+....
T Consensus 792 rnn~~kyIE~yVQk--vNps~~p~VvG~LLD----~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i 865 (1666)
T KOG0985|consen 792 RNNLQKYIEIYVQK--VNPSRTPQVVGALLD----VDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI 865 (1666)
T ss_pred HhhHHHHHHHHHhh--cCCcccchhhhhhhc----CCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22222222222211 111112222222222 22222222 1222333332 223445566777
Q ss_pred HcCCCchhHHHHHHHHHhhcCChHHH-HH---HHHhc------ccCCh-----------------------hHHHHHHHH
Q 035503 361 QSGQSDVVVASSIVDMYAKCERIDNA-KQ---VFNSI------ILRDV-----------------------VLWNTLLAA 407 (788)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A-~~---~~~~~------~~~~~-----------------------~~~~~l~~~ 407 (788)
+.|..|+.++++|...|...++-.+. ++ .++.. .++|+ ..|-...+-
T Consensus 866 ~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRY 945 (1666)
T KOG0985|consen 866 QEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARY 945 (1666)
T ss_pred hccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHH
Confidence 77778888888888888766543321 11 01110 01111 112233333
Q ss_pred HHHcCChhHHHH-----------HHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHHhh-hC-CCCCChhhHH
Q 035503 408 YADLGRSGEASR-----------LFYQMQLEGI--SPNIISWNSVILGFLRNGQMNEAKDMFLQMQ-SL-GVQPNLITWT 472 (788)
Q Consensus 408 ~~~~g~~~~a~~-----------~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~-g~~~~~~~~~ 472 (788)
+....+.+--.+ +.++..+.++ ..|..-....+.+++..+-..+-+++++++. +. -+.-+...-|
T Consensus 946 lv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 946 LVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred HHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 333333332222 2222232222 2334444555667777777777777777762 22 1222223333
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
.|+-.-.+. +..+..++.+++-.-+ .|+ +...+...+-+++|..+|+..-. +..+...|+ -..+
T Consensus 1026 LLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLi---e~i~ 1089 (1666)
T KOG0985|consen 1026 LLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLI---ENIG 1089 (1666)
T ss_pred hHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHH---HHhh
Confidence 333333332 3445566666654432 222 22334555667777777766432 222333333 2456
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 553 NIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 553 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+ ..|+..|..+++.+.+.|.+++-.+++..+.+
T Consensus 1090 ~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 677777777766554 4699999999999999999988866 34677899999999999999999998876644
Q ss_pred hcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 633 DHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 633 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
. .-.|..+ ..|+-+|.+.+++.|-.+++. -|+..-....+.-|...|.++.|.-+|.. ..-|..|
T Consensus 1162 k-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~L 1226 (1666)
T KOG0985|consen 1162 K-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKL 1226 (1666)
T ss_pred h-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHH
Confidence 3 4455544 468899999999999888874 36777777888889999999999888765 4457778
Q ss_pred HHHHHhCCCcHHHHHHHHHH
Q 035503 713 SNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~ 732 (788)
+..+...|++..|.+.-++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 88888888888887766554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-10 Score=118.20 Aligned_cols=230 Identities=14% Similarity=0.187 Sum_probs=170.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------CC-
Q 035503 504 TTITCALSACTDVASLRNGRAIHGYLIRH-------DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------KE- 568 (788)
Q Consensus 504 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~- 568 (788)
.+...+...|...|+++.|...++.+++. ....-....+.++..|...+++++|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777788888888777777664 2211122344578888999999999888876542 22
Q ss_pred h---hhHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCCHh-HHHHHHHHhhccCcHHHHHHHHHhcHhhcC--C
Q 035503 569 L---PVYNAMISGYAMHGLAVEALALFKNLQQK-----G-IDPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDHQ--V 636 (788)
Q Consensus 569 ~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~ 636 (788)
+ .+++.|..+|.+.|++++|..++++..+- + ..|... .+..+...|+..+++++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 36778888999999999998888876541 1 122332 355566679999999999999998776544 2
Q ss_pred CCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 035503 637 KPS----MEHFGCVVNLLSRCGNLDEALRVILTMP---------CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQL- 701 (788)
Q Consensus 637 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 701 (788)
.++ ..++..|+..|...|++++|.++++++- ..+. ...++.++..|.+.+++++|..+|..++.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4577899999999999999999998871 1222 346778889999999999999999887753
Q ss_pred ---CCCC---CchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 702 ---EPDN---PGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 702 ---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
.|++ ..+|.+|+.+|..+|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4554 4578899999999999999999988875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-08 Score=98.47 Aligned_cols=448 Identities=13% Similarity=0.092 Sum_probs=232.9
Q ss_pred HHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 035503 255 IVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL 334 (788)
Q Consensus 255 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 334 (788)
+..+..+|++++|.....++...+ +-|...+..=+-+..+.+.+++|..+.+.-.. ...+..-+-.-..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccH
Confidence 345556677777777777777654 34444555555556666666666643322110 011111111112333456666
Q ss_pred hHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCCh
Q 035503 335 EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRS 414 (788)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 414 (788)
++|+..++.....+ ..+...-...+.+.|++++|..+|+.+.+.+...+..-+++-+..-
T Consensus 96 Dealk~~~~~~~~~------------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~-- 155 (652)
T KOG2376|consen 96 DEALKTLKGLDRLD------------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV-- 155 (652)
T ss_pred HHHHHHHhcccccc------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--
Confidence 66666666332221 1233344455566667777777776665544444333332211100
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHH---HHHHHhcCCHHHHHHHHHHhhhC-------CCCCCh-------hhHHHHHHH
Q 035503 415 GEASRLFYQMQLEGISPNIISWNSV---ILGFLRNGQMNEAKDMFLQMQSL-------GVQPNL-------ITWTTLISG 477 (788)
Q Consensus 415 ~~a~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~-------~~~~~li~~ 477 (788)
..+... ..+......| ..+|..+ ...+...|++.+|+++++...+. +-..+. ..--.+..+
T Consensus 156 ~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 156 AAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 000111 0122222223 2233333 33456688888888888876211 100001 111234456
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHH---HHhhccCchHH--HHHHHHHHHHc-------CC--CCChhHHHH
Q 035503 478 LTQNSCGNEAILFFQEMLETGIKPSTTTITCAL---SACTDVASLRN--GRAIHGYLIRH-------DL--CLPTPIVTS 543 (788)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~~~~~-------~~--~~~~~~~~~ 543 (788)
+...|+.++|..++...++.. .+|........ .+...-.++.. +...++..... .. ..-..++..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888764 44442221111 11111111111 11111110000 00 001112222
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCCh-hhHHHHHH-HH-HhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccC
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPSKEL-PVYNAMIS-GY-AMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAG 618 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~-~~-~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g 618 (788)
.+....-.+..+.+.+....++...+ ..+..++. +. ++...+.+|.+++...-+. .|.. ......+......|
T Consensus 313 ~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 313 NALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcC
Confidence 22223334555666666666665332 22333333 22 2233577888888887554 3433 34444555678899
Q ss_pred cHHHHHHHHHhcHhh-----cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHh
Q 035503 619 LVNEGLELFVGMFSD-----HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM--------PCDPDA-HIIGSLLSTCVK 684 (788)
Q Consensus 619 ~~~~A~~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~ 684 (788)
+++.|++++...... ..+.-.+.+...+...+.+.++.+-|..++.++ ...+.. ..|..++..-.+
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 999999999822110 022334556667888888888877676666655 122222 233334444567
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+|+-++|...++++++.+|++..+...+.-+|.+.. .+.|..+-+.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 799999999999999999999999999999998875 4666665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-10 Score=121.60 Aligned_cols=244 Identities=12% Similarity=0.018 Sum_probs=175.2
Q ss_pred CchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhh---------ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 483 CGNEAILFFQEMLETGIKPSTT-TITCALSACT---------DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
.+++|...|++..+ ..|+.. .+..+..++. ..+++++|...++++++.+| .+...+..++.++...|
T Consensus 276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 34677777777776 345433 3333333322 23457889999999999888 67788888899999999
Q ss_pred CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHH
Q 035503 553 NIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFV 628 (788)
Q Consensus 553 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~ 628 (788)
++++|...|++..+ .+...|..+..++...|++++|+..+++..+. .|+. ..+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999987654 34457888899999999999999999998886 4543 233334445666889999999999
Q ss_pred hcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 629 GMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 629 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
++... ..|+ +..+..++.+|...|+.++|...+.++ +..|+. ..++.+...|...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88643 2354 445678889999999999999999887 344443 34556666677777 47888777777644333
Q ss_pred CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.....+..+|.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33333478888888988777776 7776665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=103.01 Aligned_cols=162 Identities=16% Similarity=0.194 Sum_probs=140.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVN 648 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 648 (788)
+...|.-.|...|+...|...+++.++. .| +..++..+...|.+.|..+.|.+.|++++ .+.|+ .++.+..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3556778899999999999999998885 45 45678888888999999999999999887 55666 678889999
Q ss_pred HHhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHH
Q 035503 649 LLSRCGNLDEALRVILTMPCDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
.+|..|++++|...|+++...|. ..+|.+++....+.|+.+.|+..++++++.+|+.+.....++..+++.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999854443 45888998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 035503 725 VSQVRDIMKEKGL 737 (788)
Q Consensus 725 A~~~~~~~~~~~~ 737 (788)
|..++++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999888775
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.6e-07 Score=90.29 Aligned_cols=625 Identities=12% Similarity=0.055 Sum_probs=311.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCC
Q 035503 52 SSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDA 131 (788)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (788)
--+.+.+++..-+.+.+.++. +.+-...|.....-.+...|+-++|.......++.. ..+..-|..+.-.+....+
T Consensus 15 lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 15 LKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHHHHHHHhhhhh
Confidence 344567788888888888776 334445666666666677888888888777777654 5666778888888888888
Q ss_pred hHHHHHHhccCC--CC-CcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHH
Q 035503 132 LDVASRLFCRLR--VK-NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYV 208 (788)
Q Consensus 132 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 208 (788)
+++|+++|...- ++ |...|.-+.-.=.+.|+++.....-....+.. +.....|.....+.--.|+...|..+.+..
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997653 33 34445544444456677777777766666532 223346777777777788888888888888
Q ss_pred HHHcC-CCchhhhhHHH------HHhHhcCChHHHHHHHhcCCCC--Ccc-hHHHHHHHHHHCCChhHHHHHHHHHHHcC
Q 035503 209 LKVGF-DGCVFVASSLI------DMYGKCGDLEEARKVFDGMIAR--NVV-AWNSMIVGYVQNGLNEEAIRVFYEMTLEG 278 (788)
Q Consensus 209 ~~~~~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 278 (788)
.+... .|+...+.... ....+.|.++.|.+-+...... |-. .-..-...+.+.+++++|..++..++..
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r- 248 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER- 248 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-
Confidence 77652 44444443322 3345677788888777654332 211 2223345667888999999999998876
Q ss_pred CCCCHHHHHHHHHHhc--CcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchh-HHHH
Q 035503 279 VEPTRVSVTSILSASA--NLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVT-WNLL 355 (788)
Q Consensus 279 ~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l 355 (788)
.||...|...+..+. -.+..+....++...-..-.. .......=++......-.+..-.++..+.++++.+ +..+
T Consensus 249 -nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 249 -NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred -CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 477777766665554 223333333444443332110 00000000111111111122223333334443322 2222
Q ss_pred HHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhc--ccCChhHH--HHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 035503 356 IASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI--ILRDVVLW--NTLLAAYADLGRSGEASRLFYQMQLEGISP 431 (788)
Q Consensus 356 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 431 (788)
..-|-... ...+...++..|...-.-.......+.- ..|....| ..++..+-..|+++.|+.+++.+..+ .|
T Consensus 327 ~SLyk~p~--k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 327 RSLYKDPE--KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred HHHHhchh--HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 22111111 1112222222222211111111000000 12222222 23444555556666666666555544 33
Q ss_pred ch-hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035503 432 NI-ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510 (788)
Q Consensus 432 ~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (788)
+. ..|..=...+...|++++|..++++..+.. .+|...-.--..-..++++.++|.++.....+.|. +......-+
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 32 223333344555556666655555554432 11222222333344455555555555555554442 111111100
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHH--HHHHHHHcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhC
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS--LVDMYAKCGNIHQAKRVFDISPS------KELPVYNAMISGYAMH 582 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~ 582 (788)
.-+|.. =+.+|.++|++..|++-|..+.+ .|-.-| -.-|.+.
T Consensus 480 ---------------------------qcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDf---htyc~rk 529 (700)
T KOG1156|consen 480 ---------------------------QCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDF---HTYCMRK 529 (700)
T ss_pred ---------------------------hhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhH---HHHHHhc
Confidence 011221 24567777777777776655432 111111 1123333
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC-CCCcchHHHHH----HHHhhcC-Ch
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV-KPSMEHFGCVV----NLLSRCG-NL 656 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~~~~~l~----~~~~~~g-~~ 656 (788)
|-...=+++++.-.. +...+.-+.+ ...|+++|-+|...... .+.......+. ....++. +.
T Consensus 530 ~tlrsYv~ll~~~d~--L~~~p~y~~A----------a~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~ 597 (700)
T KOG1156|consen 530 GTLRSYVELLEWEDN--LRSSPYYLRA----------AKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAK 597 (700)
T ss_pred CcHHHHHHHHHHHHh--hccChHHHHH----------HHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHH
Confidence 333333333322111 1111111111 12455555555332100 01111111111 1111111 11
Q ss_pred HHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 657 DEALRVILTM--------------PCDPDAHIIGSLLSTCVKS-NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 657 ~~A~~~~~~~--------------~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
..|.+--... +..+|.. -++..+.+- .=.++|..++.......+++..+|..-..+|.+.|.
T Consensus 598 kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k 674 (700)
T KOG1156|consen 598 KKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGK 674 (700)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence 1111111111 2234443 233333333 345779999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHCC
Q 035503 722 WNEVSQVRDIMKEKG 736 (788)
Q Consensus 722 ~~~A~~~~~~~~~~~ 736 (788)
+.-+.+..+.+....
T Consensus 675 ~~l~~~~~~~~~~~~ 689 (700)
T KOG1156|consen 675 FLLALACLNNAEGIH 689 (700)
T ss_pred HHHHHHHHHhhhhhc
Confidence 999999988876544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=115.18 Aligned_cols=147 Identities=11% Similarity=-0.077 Sum_probs=76.7
Q ss_pred CCCchHHHHHHHHHHhCC-CCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 035503 481 NSCGNEAILFFQEMLETG-IKPS--TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (788)
.+..+.++.-+.+++... ..|+ ...+......+...|+.++|...++++++..| .+...++.++..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 355566666666666431 1121 22344445555666666666666666666655 4555666666666666666666
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 558 KRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 558 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
...|+...+ .+..+|..++.++...|++++|++.|++..+. .|+..........+...++.++|...+++.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666654433 22345555555566666666666666665553 232221111111223345556666655443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-10 Score=124.21 Aligned_cols=212 Identities=12% Similarity=0.025 Sum_probs=170.4
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc---------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC---------GNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLA 585 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 585 (788)
.+++|...++++++.+| .+...+..++.+|... +++++|...+++..+ .+..+|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 45789999999999988 5667777777766532 448899999987765 4556888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc-hHHHHHHHHhhcCChHHHHHHHH
Q 035503 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME-HFGCVVNLLSRCGNLDEALRVIL 664 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 664 (788)
++|+..|++.++.+ +.+...+..+..++...|++++|+..++++. .+.|+.. .+..++..+...|++++|.+.++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998864 3345677778888999999999999999987 4566643 33445556777899999999998
Q ss_pred hCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 665 TMP--CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 665 ~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++. ..|+ +..+..++.++...|+.++|+..++++....|++......++..|...| ++|...++.+.+..
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 873 2344 4457778888889999999999999999999998888999999999998 48888888876643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-08 Score=99.53 Aligned_cols=234 Identities=15% Similarity=0.064 Sum_probs=164.3
Q ss_pred CCcccHHHHHH--HhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCC----------
Q 035503 77 IGPEIYGELLQ--GCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRV---------- 144 (788)
Q Consensus 77 ~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 144 (788)
-|+.|-.+++. .|...|+.+.|.+-.+.+.. ..+|..+.++|.+..++|-|.-++-.|..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 46667777764 47788999999887766543 34899999999999999999888877742
Q ss_pred -CCc-ccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhH
Q 035503 145 -KNV-FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASS 222 (788)
Q Consensus 145 -~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (788)
.|. ..=..+.......|..++|+.+|.+-++. -.+=+.|-..|.+++|.++-+.--+-.+ ..+|..
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~ 863 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN 863 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence 111 11122233345679999999999987763 2333445677899999887665322221 245556
Q ss_pred HHHHhHhcCChHHHHHHHhcCCC-----------------------CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCC
Q 035503 223 LIDMYGKCGDLEEARKVFDGMIA-----------------------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279 (788)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 279 (788)
-..-+-..+|.+.|++.|++... +|...|.....-.-..|+.+.|+.+|...+.
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 66666777889999988887622 2444555555555567888888888877654
Q ss_pred CCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcC
Q 035503 280 EPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345 (788)
Q Consensus 280 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 345 (788)
|.++.+..|-.|+.++|.++-++ .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56777788888999998887664 3355566678899999999999999998763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-08 Score=97.46 Aligned_cols=431 Identities=10% Similarity=0.041 Sum_probs=216.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 035503 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSK 330 (788)
Q Consensus 251 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (788)
|..++.+| ..+++...+.+.+.+.+. .+-...|.....-.+...|+.++|.......++.. ..+.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34444443 445555555555555542 22223333333333444555555555554444422 2233444444444444
Q ss_pred cCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHH
Q 035503 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYAD 410 (788)
Q Consensus 331 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 410 (788)
..++++|++.|.....-++ .|...|.-+.-.-.+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~----------------------------------------------dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK----------------------------------------------DNLQILRDLSLLQIQ 121 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC----------------------------------------------CcHHHHHHHHHHHHH
Confidence 4455555555444433222 233344444444445
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCChhhHHHHH------HHHHhCCC
Q 035503 411 LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLG-VQPNLITWTTLI------SGLTQNSC 483 (788)
Q Consensus 411 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~ 483 (788)
.|+++.......+..+.. +.....|..+.-++.-.|++..|..+++...+.. -.|+...|.... ......|.
T Consensus 122 mRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 555555555444444431 2223334444445555555555555555553322 123333333222 22344555
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC-GNIHQAKRVFD 562 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 562 (788)
+++|++.+..-... +......-..-...+.+.+++++|..++..++...| .+...|..+..++.+- +..+....+|.
T Consensus 201 ~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~ 278 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYA 278 (700)
T ss_pred HHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55555555443321 111111222233345556666666666666666655 4444445555555422 22222224444
Q ss_pred hCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH---H-HHHHHHhcHhhcC
Q 035503 563 ISPSK---ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN---E-GLELFVGMFSDHQ 635 (788)
Q Consensus 563 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~-A~~~~~~~~~~~~ 635 (788)
...+. ....-..=++...-..-.+..-+++..+.+.|+++--..+.++. -.-...+ + +..+...+ ...+
T Consensus 279 ~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L-~~~~ 354 (700)
T KOG1156|consen 279 ILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSL-SGTG 354 (700)
T ss_pred HHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhc-cccc
Confidence 33321 00000000011111122233445566677777655333333332 2211111 1 11111111 1101
Q ss_pred ----------CCCCcchH--HHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 636 ----------VKPSMEHF--GCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 636 ----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
-+|..-.| ..++..+-+.|+++.|..+++.+ ...|+. ..|..-++.+...|+.+.|-..++.+.++
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 13443333 37788889999999999999988 444554 35666778888899999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 702 EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 702 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
|-.|..+...-+....+.++.++|..+..+....|.
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 888777777888999999999999999988877664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-07 Score=89.46 Aligned_cols=315 Identities=11% Similarity=0.056 Sum_probs=179.3
Q ss_pred HcCChhHHHHHHHHHHHcCCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHH
Q 035503 410 DLGRSGEASRLFYQMQLEGISPNIISWNSVIL-GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488 (788)
Q Consensus 410 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 488 (788)
..-.+++|++++++.+.. .|+-...|..+. +|.+..-++-+.++++-..+. ++.++..-|.......+.=+-.-|.
T Consensus 163 mR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhH
Confidence 334567777777776654 345444444333 455666666666666665443 2223444444444333333333344
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 035503 489 LFFQEMLETGIKPSTTTITCALS-ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567 (788)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (788)
.-.+++.+.+ .....-...+++ .+..-.+-+.|.+++--+.+.- +.+...|+-.|.+++++.+|..+.+.+...
T Consensus 240 ~E~k~ladN~-~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 240 DEKKELADNI-DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred HHHHHHHhcc-cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 3344443322 111000001111 0111233455666665555433 234556778899999999999999988775
Q ss_pred ChhhHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 568 ELPVYNAMISGYAMHG-------LAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
.+.-|-.-.-.+...| ...-|...|+-.-+.+..-|. ..-.++..++.-..++++.+.+++... .+ + .+
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sY-F-~N 391 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SY-F-TN 391 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HH-h-cC
Confidence 5544432222222222 334455555544333333222 223345555566678899999988874 32 2 33
Q ss_pred cchHH-HHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-CchHHHHH
Q 035503 640 MEHFG-CVVNLLSRCGNLDEALRVILTMP---CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE-PDN-PGNYVALS 713 (788)
Q Consensus 640 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~-~~~~~~l~ 713 (788)
...|+ .++.+++..|...+|.++|-.+. .+.+......|++.|...|..+.|-.++ ++.+ |.+ ...+...+
T Consensus 392 dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIA 468 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIA 468 (557)
T ss_pred cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHH
Confidence 34444 89999999999999999998884 2334444455666777888998876654 3433 332 33455667
Q ss_pred HHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 714 NAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 714 ~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.+++.|.+==|.+.|+.+....+.
T Consensus 469 n~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 469 NDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHHccCCC
Confidence 8899999998888888877665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-07 Score=100.05 Aligned_cols=627 Identities=12% Similarity=0.019 Sum_probs=298.9
Q ss_pred hhHHHHHHHHHHhcCCCCC-cccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHH
Q 035503 60 IREAVDLLTEMKCRNFQIG-PEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRL 138 (788)
Q Consensus 60 ~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 138 (788)
...|+..|-+-.+.. ++ ...|..|..-|+..-+.-.|.+-|+.+-+.. +.+...+......|+...+++.|..+
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHH
Confidence 555665555544433 22 2356777777766667777777777776664 66677777777777777777777776
Q ss_pred hccCCCCCc---cc--HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcC
Q 035503 139 FCRLRVKNV---FS--WAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGF 213 (788)
Q Consensus 139 ~~~~~~~~~---~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 213 (788)
.-...+.+. .. |--.--.|...++...|+.-|+...+.. +.|...|..+..+|..+|.+..|.++|+++....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-
Confidence 433332211 12 2222223456666666666666665532 1233466666677777777777777776665544
Q ss_pred CCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC---------C-cchHHHHHHHHHHCCChhHHHHHHHHHH-------H
Q 035503 214 DGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR---------N-VVAWNSMIVGYVQNGLNEEAIRVFYEMT-------L 276 (788)
Q Consensus 214 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~-~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~ 276 (788)
|.+.+..-...-+-+..|.+.+|...+..+... + ..++-.+...+...|-...|.+.+++-+ .
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 223333333333445566666666666655221 0 1122222222222333333333332221 1
Q ss_pred cCCCCCHHHHHHHHHHh-----------------------cCcCChhHHH----HHHHHHHHhCCCCchhHHHHHHHHHH
Q 035503 277 EGVEPTRVSVTSILSAS-----------------------ANLDALDEGK----QAHAVAVINGMELDNVLGSSIINFYS 329 (788)
Q Consensus 277 ~g~~p~~~t~~~ll~~~-----------------------~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (788)
....-+...|..+-++| ...+....-. ..-.-.....+..+..+|..|+.-|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 11112222222222222 2222110000 00000000011112333333333222
Q ss_pred h----cC----ChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCCh
Q 035503 330 K----VG----LLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDV 398 (788)
Q Consensus 330 ~----~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~ 398 (788)
+ .| +...|+..+.+.++-. ..+...++.|.-. ...|++.-|.-.|-+.. +...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~---------------ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC---------------ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh---------------hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 2 11 1123334333332211 1122233333222 33345555554443332 2345
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCCChhhHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM----QSLGVQPNLITWTTL 474 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~l 474 (788)
.+|..+...+.+..+++-|...|...+... +.|...|..........|+.-++..+|..- ...|--+...-|-+.
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 567777777777777777777777766542 334444444444444566666666666551 223334444445444
Q ss_pred HHHHHhCCCchHHHHHHHHHHhC---------CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH-----cCCCCChhH
Q 035503 475 ISGLTQNSCGNEAILFFQEMLET---------GIKPSTTTITCALSACTDVASLRNGRAIHGYLIR-----HDLCLPTPI 540 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~---------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 540 (788)
......+|+.++-+...+.+... +.+.+...|........+.+....+.....+++. .+......+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44455566655444333332111 2233345555555555566666666555554432 111122224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCH-hHHHHHHHHhhcc
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPSK-ELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDS-ITFTNILNACSHA 617 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-~~~~~ll~~~~~~ 617 (788)
-..++..++..|.++.|...+...... +..+-..- .+..-.|+++++.+.|++...-- -..+. +....++-+....
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 445666777778888777666544321 11111111 11134577888888888876531 11121 2233333344556
Q ss_pred CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCCh---HHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHH
Q 035503 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL---DEALRVILTMPCDPDAHIIG---SLLSTCVKSNETELA 691 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A 691 (788)
+.-+.|...+-+.... -+|+.....+|..++.-..+- ..+++-+.+.+...+. .|. ..-..|...|+-...
T Consensus 1089 ~~k~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~-~~~~~ll~e~i~~~~~r~~~v 1165 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWF-CWPPGLLKELIYALQGRSVAV 1165 (1238)
T ss_pred ccchHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHh-ccChhHHHHHHHHHhhhhHHH
Confidence 6666666665555432 234444444444443322222 2222223222111000 111 111235667888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHH
Q 035503 692 EYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 692 ~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
....+++.-.+|.++..|..|..
T Consensus 1166 k~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1166 KKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHHHHhcCCCChHHHHHHHH
Confidence 88888988899999888888864
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-07 Score=98.31 Aligned_cols=578 Identities=13% Similarity=0.009 Sum_probs=313.7
Q ss_pred chhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCCC---CcccHHHHHHHHHcCCCchHHHHHHH
Q 035503 95 MYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVK---NVFSWAAIIGLNCRVGLSEKALIGFV 171 (788)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (788)
...+...+-+.++.. +.-...+..|...|+...+...|.++|+..-+- +...+......|++..++++|..+.-
T Consensus 474 ~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 555666666666664 556677899999999888999999999887543 55678889999999999999998843
Q ss_pred HHHHCCC-CCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcch
Q 035503 172 EMQEDGV-SPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVA 250 (788)
Q Consensus 172 ~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 250 (788)
..-+... ..-..-|..+--.+...++...+..-|+...+.. +.|...|..|..+|.++|.+..|.++|.+...-++..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 3322210 0011122223333567788899999999888877 7788999999999999999999999998875543332
Q ss_pred HHHH---HHHHHHCCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHH-------hCC
Q 035503 251 WNSM---IVGYVQNGLNEEAIRVFYEMTLE------GVEPTRVSVTSILSASANLDALDEGKQAHAVAVI-------NGM 314 (788)
Q Consensus 251 ~~~l---i~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~ 314 (788)
+-.. ...-+..|.+.+|++.+...... +..--..++..+...+...|-...+..+++..+. ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 2221 22345689999999999887653 1112223333333333333333333333222221 111
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc
Q 035503 315 ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII 394 (788)
Q Consensus 315 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (788)
..+...|-.+. +|..+|-... ++. +...++..+.+ -++.+.
T Consensus 710 ~~~~~~Wi~as----------dac~~f~q~e-~~~-------------------vn~h~l~il~~---------q~e~~~ 750 (1238)
T KOG1127|consen 710 QSDRLQWIVAS----------DACYIFSQEE-PSI-------------------VNMHYLIILSK---------QLEKTG 750 (1238)
T ss_pred hhhHHHHHHHh----------HHHHHHHHhc-ccc-------------------hHHHHHHHHHH---------HHHhcc
Confidence 11111111111 1112222222 111 11111111111 000000
Q ss_pred -cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----c----CCHHHHHHHHHHhhhCCCC
Q 035503 395 -LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----N----GQMNEAKDMFLQMQSLGVQ 465 (788)
Q Consensus 395 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~----g~~~~A~~~~~~~~~~g~~ 465 (788)
-++.. +-.+ +.+.+-.-+. ...+..+|..++..|.+ . .+...|+..+.+..+.. .
T Consensus 751 ~l~~~d-~l~L------------g~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-a 814 (1238)
T KOG1127|consen 751 ALKKND-LLFL------------GYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-A 814 (1238)
T ss_pred cCcchh-HHHH------------HHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-h
Confidence 00000 0000 0000000000 01112222222222222 1 12235666666553321 1
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 466 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
.+..+|+.|.-. ...|++.-|...|-+-... .+-...+|..+.-.|....+++.|...+.......| .+...|....
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~A 891 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEA 891 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHH
Confidence 255666665544 5556666666666655543 233455666666667777777777777777777666 4555555555
Q ss_pred HHHHHcCCHHHHHHHHhhC-----CC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHH---------cCCCCCHhHHH
Q 035503 546 DMYAKCGNIHQAKRVFDIS-----PS---KELPVYNAMISGYAMHGLAVEALALFKNLQQ---------KGIDPDSITFT 608 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---------~~~~p~~~~~~ 608 (788)
......|+.-++..+|..- .+ ++..-|-.-.......|+.++-+...+.+-. .+.+.....|.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 5555667777777776531 11 3333344444444555555543333222211 12334556777
Q ss_pred HHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH----HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 035503 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG----CVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK 684 (788)
Q Consensus 609 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 684 (788)
..+....+.+.+.+|.+...+.+.-...+-+...|+ ..+..++..|.++.|...+...+..-+......-+.. .-
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ff 1050 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FF 1050 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HH
Confidence 777777788888887777776553322333444444 4556667778888777666655443333332222222 45
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 685 SNETELAEYISEHLLQLEPDNPG---NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.|+++++.+.|++++.+.-++.. ....++.....++..+.|...+-+....
T Consensus 1051 kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1051 KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 68888888888888887655444 3334445556677777777776555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-06 Score=86.38 Aligned_cols=516 Identities=13% Similarity=0.068 Sum_probs=249.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCCh
Q 035503 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233 (788)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 233 (788)
|.+....+.|.+|+.+++.+.... .-...|..+...|+..|+++.|.++|.+. ..++.-|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 445566777888888887766542 23345777788888888888888877653 2345667788888888
Q ss_pred HHHHHHHhcCCCC--CcchHHHHHHHHHHCCChhHHHHHH-------------HH------HHHc--CCCC--CHHHHHH
Q 035503 234 EEARKVFDGMIAR--NVVAWNSMIVGYVQNGLNEEAIRVF-------------YE------MTLE--GVEP--TRVSVTS 288 (788)
Q Consensus 234 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~-------------~~------m~~~--g~~p--~~~t~~~ 288 (788)
+.|.++-++...| .+..|-.-..-+-..|++.+|.++| ++ |.+. ...| -..|...
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 8888887776544 2333443333333444444433332 11 1100 0112 2345555
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchh
Q 035503 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVV 368 (788)
Q Consensus 289 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 368 (788)
+..-+...|++..|+..|-.. .-|.+.+++|-..+.|++|.++-..-...+...-...+-+-.-.| +..
T Consensus 888 f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksigg--daa 956 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGG--DAA 956 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCc--HHH
Confidence 666667778877777665432 235567788888888888887765543333222111111111111 111
Q ss_pred --------HHHHHHHHHhhcCChHHHHHHHHhccc-CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--------CC
Q 035503 369 --------VASSIVDMYAKCERIDNAKQVFNSIIL-RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI--------SP 431 (788)
Q Consensus 369 --------~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--------~~ 431 (788)
....-++..+..+.++-|.++-+-..+ +....-..+...+-..|++++|.+.+-+.++.+. .|
T Consensus 957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavp 1036 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVP 1036 (1636)
T ss_pred HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhccc
Confidence 223334444444555555544433322 1122222334445567888888877777665421 11
Q ss_pred chhHHH---------HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC
Q 035503 432 NIISWN---------SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS 502 (788)
Q Consensus 432 ~~~~~~---------~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (788)
+.+-.. ..+.++.+.+++..|.++-+.--+. .. +..|..-..+-...|++-+|..++-+.. +|+
T Consensus 1037 srfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~-~l--~dv~tgqar~aiee~d~~kae~fllran----kp~ 1109 (1636)
T KOG3616|consen 1037 SRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCED-LL--ADVLTGQARGAIEEGDFLKAEGFLLRAN----KPD 1109 (1636)
T ss_pred chhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChh-hh--HHHHhhhhhccccccchhhhhhheeecC----CCc
Confidence 111000 1122244444444444443321110 11 1222222333334444444444332221 232
Q ss_pred HHHHHHHHHHhhccCchHHHH----------------HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 503 TTTITCALSACTDVASLRNGR----------------AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 503 ~~~~~~ll~~~~~~~~~~~a~----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
.. +.-+...+.+..|. ++-+...+.|- .....+..-+.-+.+.|+|.+|...+-++.+
T Consensus 1110 i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~ga-rgvd~fvaqak~weq~gd~rkav~~~lkinr 1183 (1636)
T KOG3616|consen 1110 IA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGA-RGVDGFVAQAKEWEQAGDWRKAVDALLKINR 1183 (1636)
T ss_pred hH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHhcccHHHHHHHHhhhcc
Confidence 11 11111112222221 12223334443 4444555566667777888888777755532
Q ss_pred CC---------------------------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc
Q 035503 567 KE---------------------------LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619 (788)
Q Consensus 567 ~~---------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 619 (788)
.. .....+.+.++...|..+.|.+++--+-. ....|++++....
T Consensus 1184 dst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~---------~keaida~~~~ee 1254 (1636)
T KOG3616|consen 1184 DSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEAEE 1254 (1636)
T ss_pred CCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhHHH
Confidence 11 11111112222233333333333221100 0112444555544
Q ss_pred HHHHHH---------------HHHhcHhhcCCCCC---cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035503 620 VNEGLE---------------LFVGMFSDHQVKPS---MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLST 681 (788)
Q Consensus 620 ~~~A~~---------------~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 681 (788)
+.+|.+ +|++.++..|--.. .. .-.-++++...+++++|++-..+-..+|-..-|.++..+
T Consensus 1255 wakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa 1333 (1636)
T KOG3616|consen 1255 WAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAA 1333 (1636)
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 444433 33333322121111 11 113456777888888888777777666666666665555
Q ss_pred -HHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHHH
Q 035503 682 -CVKSNETELAEYISEHLL-QLEPDNPGNYVALSN 714 (788)
Q Consensus 682 -~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 714 (788)
+...|+..+|+.++++-= -.+|.+..+|-.+..
T Consensus 1334 ~li~~~d~aq~lal~~q~ga~anpanfniyk~i~e 1368 (1636)
T KOG3616|consen 1334 HLIHEGDLAQALALLEQHGAPANPANFNIYKLIFE 1368 (1636)
T ss_pred HHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHH
Confidence 456688888888777643 245666556555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-07 Score=99.86 Aligned_cols=254 Identities=15% Similarity=0.154 Sum_probs=151.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
++..+...|...|++++|++++++.++. .|+ ...|..-...+-+.|++.+|...++.+...+. .|..+-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHH
Confidence 3455567777888888888888888774 455 45666677777888888888888888888777 6777777778888
Q ss_pred HHcCCHHHHHHHHhhCCCCCh----------hhH--HHHHHHHHhCCCHHHHHHHHHHHHHc--CC-------------C
Q 035503 549 AKCGNIHQAKRVFDISPSKEL----------PVY--NAMISGYAMHGLAVEALALFKNLQQK--GI-------------D 601 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~----------~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-------------~ 601 (788)
.++|++++|.+++....+.+. ..| ...+.+|.+.|++..|++.|...... .+ +
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK 352 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRK 352 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhh
Confidence 888888888888876665441 123 23567788888888887766654431 01 1
Q ss_pred CCHhHHHHHHHHhhccC---c----HHHHHHHHHhcHhhcCCCCCcc-----------hHHHHHHHH---hhcCChHHHH
Q 035503 602 PDSITFTNILNACSHAG---L----VNEGLELFVGMFSDHQVKPSME-----------HFGCVVNLL---SRCGNLDEAL 660 (788)
Q Consensus 602 p~~~~~~~ll~~~~~~g---~----~~~A~~~~~~~~~~~~~~p~~~-----------~~~~l~~~~---~~~g~~~~A~ 660 (788)
....+|..++...-+.. . ...|+++|-.+........... --..+..-. .+....+++.
T Consensus 353 ~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 353 MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22333444444322211 1 1234555555532211111000 000111101 1111111121
Q ss_pred HHHHh-----------C------CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCc
Q 035503 661 RVILT-----------M------PCDPDAHIIGSLLSTCVKS-NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 661 ~~~~~-----------~------~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
..-.+ . +.++|+ ++.-+... .=.++|.++++.+.+..|++..+|..-..+|.+.|++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp-----~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~ 507 (517)
T PF12569_consen 433 KAAKKEPKKQQNKSKKKEKVEPKKKDDDP-----LGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKY 507 (517)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCCc-----cHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcH
Confidence 11100 0 112222 12222233 3468899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 035503 723 NEVSQVRDI 731 (788)
Q Consensus 723 ~~A~~~~~~ 731 (788)
--|++.+.+
T Consensus 508 LLaLqaL~k 516 (517)
T PF12569_consen 508 LLALQALKK 516 (517)
T ss_pred HHHHHHHHh
Confidence 999887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-08 Score=100.84 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=146.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhH-------HHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPI-------VTS 543 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ 543 (788)
...+.++..+..+++.|++.+....+. .-+..-++....++...|....+.......++.|.. ...- ...
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 334555666666777777777776663 223333344444566666666666665555554431 1111 122
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNE 622 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~ 622 (788)
++.+|.+.++++.|+..|.+....... -+...+....+++++..+...- +.|.. .....-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 344566667777777777654321110 1122233344455554444333 23332 222233556778888888
Q ss_pred HHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 623 GLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 623 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
|+..|.++++. .+-|...|...+-+|.+.|.+.+|++-.+.. ...|+ ...|..-+.++....+++.|.+.|+++++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888887753 2334777788888888888888888776666 34444 34566666667777888888888888888
Q ss_pred cCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 701 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
.+|++..+...+..++..+...+...++.+.
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 8888877777777777664444444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-10 Score=103.35 Aligned_cols=157 Identities=9% Similarity=-0.003 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhC
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 481 (788)
+.+.++|.+.|.+.+|.+.|+..+.+ .|-..||..|-.+|.+..+...|+.+|.+-.+. ++.++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67889999999999999999999887 567778888999999999999999999998765 333554455677888889
Q ss_pred CCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 035503 482 SCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVF 561 (788)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (788)
++.++|.++++...+.. +.+...+..+...|.-.++++.|..+++++++.|. .++..|..++-++.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999853 45566777777788888999999999999999998 66777777666666666666666555
Q ss_pred hh
Q 035503 562 DI 563 (788)
Q Consensus 562 ~~ 563 (788)
++
T Consensus 382 ~R 383 (478)
T KOG1129|consen 382 QR 383 (478)
T ss_pred HH
Confidence 53
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-09 Score=103.50 Aligned_cols=199 Identities=12% Similarity=0.039 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (788)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+..+ .+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~------- 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDV------- 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHH-------
Confidence 4455566666666666666666666665532 22233444444455555555555555555555443 23333
Q ss_pred HHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHH
Q 035503 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
+..+...+...|++++|++.+++.......+ ....+..+..++...|++++|...
T Consensus 102 ------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 102 ------------------------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------------HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444445555555555555555554422111 223344444455566666666666
Q ss_pred HHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 627 FVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 627 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
+++.... .|+ ...+..++..+...|++++|...++++. .+.+...+..++..+...|+.+.|....+.+....
T Consensus 158 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6655432 222 3445555666666666666666665541 12233444455555666667777666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-09 Score=104.83 Aligned_cols=149 Identities=8% Similarity=-0.169 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHhhhCC-CCC--ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHH
Q 035503 446 NGQMNEAKDMFLQMQSLG-VQP--NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 522 (788)
.+..+.++.-+.++.... ..| ....|..+...|...|++++|...|++.++.. +.+...+..+...+...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 445555666666654321 111 13445555666666666666666666666532 22345566666666666666666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 035503 523 RAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL--PVYNAMISGYAMHGLAVEALALFKNLQ 596 (788)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 596 (788)
...++.+++..| .+...+..++.++...|++++|.+.|+.....++ .........+...++.++|+..|++..
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666666665 4455556666666666666666666665443211 111111112234456666666665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.6e-08 Score=96.16 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=152.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC--C----HHHHHHHH
Q 035503 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP--S----TTTITCAL 510 (788)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~----~~~~~~ll 510 (788)
..+.++..+..+++.|++.+....+.. -+..-++....+|...|.+.+.........+.|... + ...+..+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556666666666666654442 244444555556666666655555555444433110 1 11222233
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhCCCHHH
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELP-VYNAMISGYAMHGLAVE 587 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~ 587 (788)
.++...++++.+...+.+.+...-. -+...+....+++....+...- +... --..-+..+.+.|++..
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt---------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT---------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC---------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 4566678888999999887664432 2233444555666665553332 2221 12233677889999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 588 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
|+..|.+++... +-|...|.....+|.+.|.+..|+.-.+..+ .+.|+ ...|..=+.++.-..++++|++.|++.
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i---eL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI---ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999875 4577889999999999999999999888776 44565 556666677777788999999999888
Q ss_pred -CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 035503 667 -PCDPDAHIIGSLLSTCVKS-NETELAEYISEH 697 (788)
Q Consensus 667 -~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 697 (788)
...|+..-+...+.-|... ...+..+++.++
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 4566655444444444442 223334445554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-06 Score=89.01 Aligned_cols=124 Identities=9% Similarity=-0.051 Sum_probs=71.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhc
Q 035503 49 HQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAK 128 (788)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (788)
+-++.+..+|++++|...-.+++..+ +-+.+.+..-+-++-+.+.+++|..+-+.-... ..+......-..+..+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhHHHHHHHHH
Confidence 34555666777788877777777654 444566777777777777777776443322110 1111111111222336
Q ss_pred cCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCC
Q 035503 129 CDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG 177 (788)
Q Consensus 129 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (788)
.+..|+|...++.....+......-.+.+.+.|++++|+.+|+.+.+.+
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 6777777777775544444455555556667777777777777766554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-11 Score=81.49 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 035503 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASAN 295 (788)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 295 (788)
||+++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-11 Score=82.98 Aligned_cols=50 Identities=26% Similarity=0.501 Sum_probs=47.4
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcc
Q 035503 145 KNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194 (788)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 194 (788)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.4e-09 Score=106.72 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC----------CChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC--
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS----------KELP-VYNAMISGYAMHGLAVEALALFKNLQQK---GIDPD-- 603 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~-- 603 (788)
+++.|+.+|.+.|++++|...+++..+ +.+. .++.++..++..+++++|..++++..+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 445555566666666665555543221 1222 3556777788888888888888775432 12222
Q ss_pred --HhHHHHHHHHhhccCcHHHHHHHHHhcHhhc-----CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--------C
Q 035503 604 --SITFTNILNACSHAGLVNEGLELFVGMFSDH-----QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM--------P 667 (788)
Q Consensus 604 --~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~ 667 (788)
..++..|...|.+.|++++|.++|++++... +..+. ...++.|+..|.+.++..+|.++|.+. +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 3567888888999999999999999887643 11222 456678888898999988888888776 2
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 668 CDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 668 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
..|+. .++.+|+..|...|+++.|+++.++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34554 4789999999999999999999998874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-08 Score=90.63 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=119.3
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHG 583 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 583 (788)
..+.-.|...|+...|..-++++++.+| .+..++..++..|.+.|+.+.|.+.|+...+ .+-...|....-+|.+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3344456666666666666666666666 5556666666666666666666666664433 33345666666667777
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHH
Q 035503 584 LAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
++++|...|++......-| -..+|..+.-+..+.|+.+.|.++|++.++ +.|+ +.....+.....+.|++-.|..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777665532222 235666666666667777777777776653 3344 4455566666667777777776
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 662 VILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 662 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
+++.. ...+......-.++.-...||.+.+-+.=.++....|.+..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 66665 22345555555555556666666666666666666666443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-07 Score=86.86 Aligned_cols=310 Identities=14% Similarity=0.129 Sum_probs=184.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHH---HHHHcCChhHHHHHHHHHHHcCCCCchhHH-HHHHHHHHh
Q 035503 370 ASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLA---AYADLGRSGEASRLFYQMQLEGISPNIISW-NSVILGFLR 445 (788)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~ 445 (788)
...+...+...|++..|+..|......|+..|.++.+ .|...|+...|+.-+.+.++. +||-..- ..-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3456667777888888888888888877777766653 677788888888888877765 6664322 223345778
Q ss_pred cCCHHHHHHHHHHhhhCCCCCC--hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHH
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPN--LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 523 (788)
.|.+++|..-|+.+.+.....+ ...+..++ ..+++ ..+...+..+...|+...++
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~--------------~~~e~---------~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLA--------------LIQEH---------WVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHH--------------hHHHH---------HHHHHHHHHHhcCCchhhHH
Confidence 8888888888888876522111 11111110 00000 11122223344455556666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh---CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI---SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI 600 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 600 (788)
.....+++..+ .+...+..-+.+|...|+...|+.-++. +...+..+.--+-..+...|+.+.++...++-+. +
T Consensus 176 ~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--l 252 (504)
T KOG0624|consen 176 EMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--L 252 (504)
T ss_pred HHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--c
Confidence 66666666555 5555666666666666666666555443 2334444444555555566666666665555444 3
Q ss_pred CCCHhHH----H-------HHH--HHhhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHH
Q 035503 601 DPDSITF----T-------NIL--NACSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRV 662 (788)
Q Consensus 601 ~p~~~~~----~-------~ll--~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~ 662 (788)
.||.... . .|- ......+++.++++..+..++ ..|. ...+..+-.++...|++.+|+..
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 4443211 1 111 123345666677777766653 3344 22334556667778888888887
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 663 ILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 663 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
..++ ...|+ +.++..-+.+|.....++.|+.-|+++.+.+|++..+-.
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 7776 44555 567777777888888888888888888888888755543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=109.46 Aligned_cols=220 Identities=16% Similarity=0.095 Sum_probs=151.9
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALA 590 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 590 (788)
.+.|++.+|.-.|+.+++.+| .+..+|..|+......++-..|+..+.+..+ .+..+...|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 344455555555555555555 4555555555555555555555555554443 233445555556666666666666
Q ss_pred HHHHHHHcCCC--------CCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 035503 591 LFKNLQQKGID--------PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRV 662 (788)
Q Consensus 591 ~~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 662 (788)
.++.-+...++ ++...-.. ..+..........++|-++....+..+|++++..|+-+|.-.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 66665443210 00000000 112223334455677777766666668899999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 663 ILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 663 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|+.+ ..+| |...||.|+..+....+.++|+..|.+++++.|....+.++|+-.|...|.+.||.+.|=.++...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9998 4444 567899999999999999999999999999999999999999999999999999999988776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-07 Score=86.75 Aligned_cols=288 Identities=12% Similarity=0.120 Sum_probs=188.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHH---HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHH-HHHHHhh
Q 035503 439 VILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL---ISGLTQNSCGNEAILFFQEMLETGIKPSTTTIT-CALSACT 514 (788)
Q Consensus 439 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~ 514 (788)
+...+...|++.+|+..|....+- |+..|.++ ...|...|+..-|+.-+.+.++ .+||...-. .-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhh
Confidence 344455555566666666555544 44444333 2345555666666665665555 455543221 1222345
Q ss_pred ccCchHHHHHHHHHHHHcCCCCCh--h------------HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPT--P------------IVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMIS 577 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 577 (788)
+.|.++.|..=|+.+++..+.... . .....+..+...|+...|+.....+.+ .|...+..-..
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 556666666666666655542211 1 111223344566888888888876654 56667778889
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc----hHHHH---H---
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME----HFGCV---V--- 647 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l---~--- 647 (788)
+|...|++..|+.-++...... ..+..++.-+-..+...|+.+.++...++.+ .+.||.. .|..| .
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999888876643 3345566666667888999999988888876 6778743 22222 1
Q ss_pred ---HHHhhcCChHHHHHHHHhC-CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 648 ---NLLSRCGNLDEALRVILTM-PCDPDAH-----IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 648 ---~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
....+.+++-++++-.++. ..+|... .+..+-..+...+++-+|++...++++++|+|..++...+.+|.-
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1234566777777666665 3445421 222333445677999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHCC
Q 035503 719 SGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~~ 736 (788)
...|++|+.-|++..+..
T Consensus 354 dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELN 371 (504)
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 999999999999987755
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-05 Score=84.43 Aligned_cols=547 Identities=13% Similarity=0.081 Sum_probs=278.2
Q ss_pred chhHhhHHHH--HHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCC--------C-CCCcc
Q 035503 115 NEYVETKLVV--FYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG--------V-SPDNF 183 (788)
Q Consensus 115 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~-~~~~~ 183 (788)
|..+..++++ .|..-|+.|.|.+..+-+. +...|..|...|.+..+.+-|.-.+-.|.... . .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 3333444443 3567799999988877665 34568899999998888888877776664311 1 121 2
Q ss_pred cHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC-CcchHHHHHHHHHHCC
Q 035503 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-NVVAWNSMIVGYVQNG 262 (788)
Q Consensus 184 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g 262 (788)
+=.-+.-.....|.+++|+.++++-.+.. .|-..|...|.+++|.++-+.-..- =..+|..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 21122222346788888888888876643 3445677788999998887643211 1125555556666778
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHH
Q 035503 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFS 342 (788)
Q Consensus 263 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 342 (788)
+.+.|++.|++.... --. ...++. .++...++..+. ..|...|.-....+-..|+++.|+.+|.
T Consensus 873 Di~~AleyyEK~~~h----afe-v~rmL~-----e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVH----AFE-VFRMLK-----EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred cHHHHHHHHHhcCCh----HHH-HHHHHH-----hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 888888888774221 111 111111 111111111111 2234455555666667788888888887
Q ss_pred hcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHH
Q 035503 343 RMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFY 422 (788)
Q Consensus 343 ~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (788)
... -|.++++..|-.|++++|-++-++- .|......+.+.|-..|++.+|..+|.
T Consensus 937 ~A~-----------------------D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 937 SAK-----------------------DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred Hhh-----------------------hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 754 3455666667777777777766543 355666677777777788888877777
Q ss_pred HHHHcC--CC--CchhHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHH---
Q 035503 423 QMQLEG--IS--PNIISWNSVILGFLRNG--QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQE--- 493 (788)
Q Consensus 423 ~m~~~~--~~--~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--- 493 (788)
++.... ++ -....-..|.+.+.-.| +.-.|-++|++.-- -...-+..|-+.|.+.+|+++-=+
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcc
Confidence 654320 00 00000011222222222 23334445544311 122234556677777776654211
Q ss_pred -----HHhCCC--CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 494 -----MLETGI--KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 494 -----m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
++..++ ..|+..+....+-++...++++|..++....+.. .- -.+|+..++.-..++-+.|..
T Consensus 1064 f~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~---------~A-lqlC~~~nv~vtee~aE~mTp 1133 (1416)
T KOG3617|consen 1064 FSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS---------GA-LQLCKNRNVRVTEEFAELMTP 1133 (1416)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------HH-HHHHhcCCCchhHHHHHhcCc
Confidence 122222 2344555555555566666666665554443311 00 011222222222222222221
Q ss_pred -C----Ch----hhHHHHHHHHHhCCCHHHHHHHHHHH----------HHcCCCCCHhHH----------HHHHHHhhcc
Q 035503 567 -K----EL----PVYNAMISGYAMHGLAVEALALFKNL----------QQKGIDPDSITF----------TNILNACSHA 617 (788)
Q Consensus 567 -~----~~----~~~~~l~~~~~~~g~~~~A~~~~~~m----------~~~~~~p~~~~~----------~~ll~~~~~~ 617 (788)
+ +. .....+...|.++|.+..|-+-|.+. ++.| ..+..+| .++..-|.+.
T Consensus 1134 ~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSG-dt~KI~FFAn~sRqkEiYImAANyLQt 1212 (1416)
T KOG3617|consen 1134 TKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSG-DTQKIRFFANTSRQKEIYIMAANYLQT 1212 (1416)
T ss_pred CcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcC-CcceEEEEeeccccceeeeehhhhhhh
Confidence 1 11 24556677777777777776555442 1122 0000000 0111112222
Q ss_pred CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh---------------cCChHHHHHHHHhCCCCCCHH-HHHHH---
Q 035503 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR---------------CGNLDEALRVILTMPCDPDAH-IIGSL--- 678 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---------------~g~~~~A~~~~~~~~~~p~~~-~~~~l--- 678 (788)
=+|.+--++.+.+. ++-.....+..|+..|.. .|-+++|.+.+.++..+.+.. .+++|
T Consensus 1213 lDWq~~pq~mK~I~---tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~ 1289 (1416)
T KOG3617|consen 1213 LDWQDNPQTMKDIE---TFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQED 1289 (1416)
T ss_pred cccccChHHHhhhH---hhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 22222222222221 111222233333333322 123444444444443332322 22222
Q ss_pred -------HHHHHh-cCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 679 -------LSTCVK-SNETELAEYISEHLLQLEPDN------PGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 679 -------~~~~~~-~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++.... ..|..+.++-.+.+++ .|+. ...|-.|+..|....+|..|-+.++.|..+-+
T Consensus 1290 ~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1290 LAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 222111 1355666666665554 3432 35678889999999999999999999987654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-06 Score=91.01 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEP---------DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
....++...|+.+.|...++.+....- .........+.++...|++++|.+.+...+..+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445556667777777777776654221 134556777888999999999999999887765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-07 Score=99.77 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc-------------CCCCCc--chHHHHHHHHhh
Q 035503 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH-------------QVKPSM--EHFGCVVNLLSR 652 (788)
Q Consensus 588 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------------~~~p~~--~~~~~l~~~~~~ 652 (788)
+..++..+..+|+++ +|..+-..|....+.+-..+++....... .-+|+. .++..++..|..
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 455566667777543 33334334554444444444444433221 112332 233467888889
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 653 CGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
.|+.++|+++++++ ...|+ +..+..-++.+...|++++|...++.+.++|+.|.-.....+..+.+.|+.++|.+++.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999987 45566 45788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCC
Q 035503 731 IMKEKGL 737 (788)
Q Consensus 731 ~~~~~~~ 737 (788)
.....+.
T Consensus 287 ~Ftr~~~ 293 (517)
T PF12569_consen 287 LFTREDV 293 (517)
T ss_pred hhcCCCC
Confidence 8866554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-06 Score=101.85 Aligned_cols=368 Identities=8% Similarity=-0.093 Sum_probs=221.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcccCChhH--HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 035503 369 VASSIVDMYAKCERIDNAKQVFNSIILRDVVL--WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRN 446 (788)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 446 (788)
........+...|++.+|..........+... ...........|+++.+..++..+.......+..........+...
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 34445566777788887777666654332211 1122233455677777766666542211112222233444556678
Q ss_pred CCHHHHHHHHHHhhhCC--C----CCC--hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCH----HHHHHHHHHhh
Q 035503 447 GQMNEAKDMFLQMQSLG--V----QPN--LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST----TTITCALSACT 514 (788)
Q Consensus 447 g~~~~A~~~~~~~~~~g--~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~ 514 (788)
|+++++...+......- . .+. ......+...+...|++++|...+++....-...+. .....+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 88898888888764320 0 111 111222334556788999999988887753111111 23344455567
Q ss_pred ccCchHHHHHHHHHHHHcCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------CC----hhhHHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLC-----LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------KE----LPVYNAMISG 578 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~ 578 (788)
..|+++.|...+..+...... ........++..+...|++++|...+++... ++ ...+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 788999998888887753211 1123455667788889999999888764322 11 1234455667
Q ss_pred HHhCCCHHHHHHHHHHHHHcC--CCCC--HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-----HHHHH
Q 035503 579 YAMHGLAVEALALFKNLQQKG--IDPD--SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-----CVVNL 649 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~ 649 (788)
+...|++++|...+++..... ..+. ...+..+...+...|++++|...+.++............+. .....
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 777899999998888865531 1121 23344455567788999999888887753211111111110 11234
Q ss_pred HhhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHH
Q 035503 650 LSRCGNLDEALRVILTMPCD--PDA----HIIGSLLSTCVKSNETELAEYISEHLLQLEPD------NPGNYVALSNAYA 717 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~ 717 (788)
+...|+.++|..++...... ... ..+..+..++...|++++|...++++++.... ...++..++.+|.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 45678999999888776321 111 12345667788889999999999998875322 2346778888999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
+.|+.++|...+.+..+..
T Consensus 743 ~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=92.54 Aligned_cols=225 Identities=14% Similarity=0.117 Sum_probs=120.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLC-LPTPIVTSLVDMYA 549 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 549 (788)
...+.+++...|+++.++ .++.... .|....+..+...+....+-+.+..-++..+..... .+..+....+.++.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334445555555544322 3332222 444444443433333323333333333222222221 22233334445666
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh----ccCcHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS----HAGLVNEGLE 625 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~ 625 (788)
..|++++|++++... .+.......+.+|.+.+|++.|.+.++.|.+. ..|.. ...+..++. -.+.+.+|..
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHH
Confidence 778888888877765 45556666778888888888888888888763 34433 333333322 2235778888
Q ss_pred HHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC
Q 035503 626 LFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNET-ELAEYISEHLLQLE 702 (788)
Q Consensus 626 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 702 (788)
+|+++.. ...+++.+.+.++.+....|++++|.+.+.++ ... .++.++-+++......|+. +.+.+..+++...+
T Consensus 189 ~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 189 IFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 8888754 33456666677777777777777777777665 222 2344555565555555655 55666777766677
Q ss_pred CCCC
Q 035503 703 PDNP 706 (788)
Q Consensus 703 p~~~ 706 (788)
|+++
T Consensus 267 p~h~ 270 (290)
T PF04733_consen 267 PNHP 270 (290)
T ss_dssp TTSH
T ss_pred CCCh
Confidence 7644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-06 Score=85.81 Aligned_cols=298 Identities=9% Similarity=-0.013 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCchhH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGI-SPNIIS-WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 476 (788)
..|..+...+...|+.+.+...+........ .++... .......+...|++++|...+++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3445555555556666666555555444311 122211 1122334556777777877777775541 223333332 22
Q ss_pred HHHh----CCCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc
Q 035503 477 GLTQ----NSCGNEAILFFQEMLETGIKPST-TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC 551 (788)
Q Consensus 477 ~~~~----~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (788)
.+.. .+....+.+.+... ....|+. .....+...+...|++++|...+++.++..+ .+...+..++.+|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 2222 34444444444431 1123332 3334455567778888888888888888776 5566777888888888
Q ss_pred CCHHHHHHHHhhCCCC-----Ch--hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHH-H--HHHHHhhccCcH
Q 035503 552 GNIHQAKRVFDISPSK-----EL--PVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPDSITF-T--NILNACSHAGLV 620 (788)
Q Consensus 552 g~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~g~~ 620 (788)
|++++|...++...+. +. ..|..+...+...|++++|+.++++...... .+..... . .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 8888888888765541 11 2345677888889999999999988754322 1111111 1 223333344433
Q ss_pred HHHHHHHHhcHhh--cCCCCCcchHH--HHHHHHhhcCChHHHHHHHHhCCC--CC---C------HHHHHHHHHHHHhc
Q 035503 621 NEGLELFVGMFSD--HQVKPSMEHFG--CVVNLLSRCGNLDEALRVILTMPC--DP---D------AHIIGSLLSTCVKS 685 (788)
Q Consensus 621 ~~A~~~~~~~~~~--~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~--~p---~------~~~~~~l~~~~~~~ 685 (788)
+.+.++ +.+... .........+. ..+.++...|+.++|...++.+.. .. . .........++...
T Consensus 242 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 332222 111110 01111111122 566777888999999998877621 11 1 11222233446788
Q ss_pred CCHHHHHHHHHHHHhcC
Q 035503 686 NETELAEYISEHLLQLE 702 (788)
Q Consensus 686 g~~~~A~~~~~~~~~~~ 702 (788)
|+.+.|...+..++..-
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999888644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-06 Score=77.03 Aligned_cols=320 Identities=11% Similarity=0.046 Sum_probs=192.3
Q ss_pred hhHHHHHhHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 035503 220 ASSLIDMYGKCGDLEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296 (788)
Q Consensus 220 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 296 (788)
+++.+..+.+..+++.|++++....++ +....+.+..+|....++..|-+.++++-.. .|...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl-------- 82 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL-------- 82 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH--------
Confidence 344555556666677777766655433 3445666666777777777777777776543 232222211
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHH
Q 035503 297 DALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDM 376 (788)
Q Consensus 297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~ 376 (788)
--...+.+.+.+.+|+++...|.+.+. ..+. ....-...
T Consensus 83 --------------------------Y~AQSLY~A~i~ADALrV~~~~~D~~~-L~~~--------------~lqLqaAI 121 (459)
T KOG4340|consen 83 --------------------------YQAQSLYKACIYADALRVAFLLLDNPA-LHSR--------------VLQLQAAI 121 (459)
T ss_pred --------------------------HHHHHHHHhcccHHHHHHHHHhcCCHH-HHHH--------------HHHHHHHH
Confidence 112233455566666666666655311 0000 00111112
Q ss_pred HhhcCChHHHHHHHHhcc-cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 035503 377 YAKCERIDNAKQVFNSII-LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455 (788)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 455 (788)
.-..+++..+..+.++.. +.+..+.+.......+.|++++|.+-|+...+.+--.....|+.-+ +..+.|+++.|++.
T Consensus 122 kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~ 200 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKH 200 (459)
T ss_pred hcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHH
Confidence 223466677777777776 3556666666677778899999999998888764333455666444 45567888899988
Q ss_pred HHHhhhCCCCCCh----------------------------hhHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCHHHH
Q 035503 456 FLQMQSLGVQPNL----------------------------ITWTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTI 506 (788)
Q Consensus 456 ~~~~~~~g~~~~~----------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~ 506 (788)
..++.++|++..+ ..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|+.|+
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 8888777664211 11222233456788999999988888632 235577787
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-----hhHHHHHHHHHh
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL-----PVYNAMISGYAM 581 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~ 581 (788)
..+.-. -..+++..+.+-+..++...| .+..++..++-.||+..-++.|-.++.+-..... ..|+ |++++..
T Consensus 281 HN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 281 HNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred hHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHh
Confidence 765432 224456667777778888887 6677888888999999999999998876554322 2222 3333332
Q ss_pred -CCCHHHHHHHHHH
Q 035503 582 -HGLAVEALALFKN 594 (788)
Q Consensus 582 -~g~~~~A~~~~~~ 594 (788)
.-..++|.+-++.
T Consensus 358 ~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDG 371 (459)
T ss_pred CCCCHHHHHHHHHH
Confidence 3455555554444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-07 Score=90.74 Aligned_cols=181 Identities=15% Similarity=0.088 Sum_probs=125.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-h---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh----
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KE-L---PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI---- 605 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---- 605 (788)
.....+..++..+...|++++|...|+.+.. |+ . .++..+..++...|++++|+..++++.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 4556777788888888888888888886654 22 2 356777888888888888888888887753 3221
Q ss_pred HHHHHHHHhhcc--------CcHHHHHHHHHhcHhhcCCCCCcchH-HHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH
Q 035503 606 TFTNILNACSHA--------GLVNEGLELFVGMFSDHQVKPSMEHF-GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIG 676 (788)
Q Consensus 606 ~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 676 (788)
++..+..++... |++++|.+.|+++... .|+.... ..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444555544 6778888888887643 3443221 111111 1011110 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++..+...|++++|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56677889999999999999999998875 4689999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-06 Score=78.47 Aligned_cols=419 Identities=12% Similarity=0.017 Sum_probs=224.6
Q ss_pred CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHH
Q 035503 278 GVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIA 357 (788)
Q Consensus 278 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 357 (788)
|+....--+.+++..+.+..++..+.+++..-.+.. +.+....+.|..+|....++..|...++++.+.-+
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-------- 75 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-------- 75 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--------
Confidence 333334445556666666667777777666555543 22444556667777777777777777777654322
Q ss_pred HHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC-ChhHHHHHHH--HHHHcCChhHHHHHHHHHHHcCCCCchh
Q 035503 358 SYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-DVVLWNTLLA--AYADLGRSGEASRLFYQMQLEGISPNII 434 (788)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 434 (788)
........-...+-+.+.+..|+++...|... +...-..-+. .....+++..+..++++.... .+..
T Consensus 76 -------~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad 145 (459)
T KOG4340|consen 76 -------ELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEAD 145 (459)
T ss_pred -------HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccc
Confidence 11112223345555667777777777666543 2221111122 223345666666666554321 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHH----HHHH
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTI----TCAL 510 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~ll 510 (788)
+.+.......+.|++++|.+-|+...+.+--.....|+.-+ +..+.|+++.|+++..+++++|++..+..- .-.+
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 44445555667788888888887775543333345555433 445567778888888888777765433210 0000
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCCH
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-----KELPVYNAMISGYAMHGLA 585 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~ 585 (788)
++ ...|+. ..++.. .-...++.-...+.+.|+++.|.+.+-.|+. .|+++...+.-.- ..+++
T Consensus 225 Dv-rsvgNt---~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p 292 (459)
T KOG4340|consen 225 DV-RSVGNT---LVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP 292 (459)
T ss_pred ch-hcccch---HHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence 00 000110 000000 0112344445567788999999999988875 4677776654332 23445
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCC-CCcchHHHHHHHHh-hcCChHHHHHHH
Q 035503 586 VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK-PSMEHFGCVVNLLS-RCGNLDEALRVI 663 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~ 663 (788)
.+..+-+.-+...+. -...||..++-.||+..-++-|..++-+-... -.. .+.-.| .|.+++. -.-..++|.+-+
T Consensus 293 ~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly-~LLdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 293 TEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLY-DLLDALITCQTAPEEAFKKL 369 (459)
T ss_pred cccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHH-HHHHHHHhCCCCHHHHHHHH
Confidence 555555555555432 24678888999999999998888777533100 000 011112 3444443 344566776665
Q ss_pred HhCCCCCCHHHHHHHHHHH-HhcCC----HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 664 LTMPCDPDAHIIGSLLSTC-VKSNE----TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 664 ~~~~~~p~~~~~~~l~~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
+.+...-........+..- .++.+ ...|++-|+..+++. -.+....+++|++..++.-+.+.|+.-.+
T Consensus 370 ~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 370 DGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 5542110111111111111 11222 223444455555533 22455678899999999999999987655
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-08 Score=93.68 Aligned_cols=246 Identities=9% Similarity=0.017 Sum_probs=163.9
Q ss_pred HHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 035503 476 SGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555 (788)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 555 (788)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. ..+.... .|.......++..+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455677777775555 222211222345556677888888766433 3333333 466666666766665556677
Q ss_pred HHHHHHhhCCC-CC---hhhHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 556 QAKRVFDISPS-KE---LPVYN-AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 556 ~A~~~~~~~~~-~~---~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
.++.-++.... .. ..++. .....+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777755443 21 12232 2334566789999999998762 35566666778899999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHH--hhc--CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 631 FSDHQVKPSMEHFGCVVNLL--SRC--GNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 631 ~~~~~~~p~~~~~~~l~~~~--~~~--g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
. .+..|. +...++.++ ... ..+.+|..+|+++. ..+++.+.+.++.++...|++++|+..++++++.+|+
T Consensus 158 ~---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 Q---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp H---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred H---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 5 444553 333333333 223 36999999999993 3467788888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhCCCc-HHHHHHHHHHHHCC
Q 035503 705 NPGNYVALSNAYAASGRW-NEVSQVRDIMKEKG 736 (788)
Q Consensus 705 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 736 (788)
++.+..+++-+....|+. +.+.+++..+....
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999999999999998 66778888776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-07 Score=102.65 Aligned_cols=210 Identities=14% Similarity=0.120 Sum_probs=173.5
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--------KELPVYNAMISGYAMHGLAVEALALFKNL 595 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 595 (788)
+=|++++...| .+...|...+......++.++|.+++++... .-...|.++++.....|.-+...++|+++
T Consensus 1445 eDferlvrssP-NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSP-NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCC-CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34555666666 6677788888888899999999999987654 12247888888888889888999999998
Q ss_pred HHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---
Q 035503 596 QQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD--- 671 (788)
Q Consensus 596 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--- 671 (788)
.+. ......|..|...|.+.+..++|.++++.|.+.++ .....|...++.+.+..+-++|.+++.++ ..-|.
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 774 23345678888899999999999999999998766 67788999999999999999999999887 23333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
.....-.+..-.+.||.++++.+|+..+.-.|.-.+.|..+++.-.+.|+.+.++.+|+++...++.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 3345556666789999999999999999999999999999999999999999999999999988764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00042 Score=82.10 Aligned_cols=367 Identities=9% Similarity=-0.060 Sum_probs=231.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc----cC
Q 035503 321 GSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII----LR 396 (788)
Q Consensus 321 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~ 396 (788)
+......+...|++.+|.............. . ........+...|+++.+...++.+. ..
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~--~--------------ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~ 407 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLR--D--------------ILLQHGWSLFNQGELSLLEECLNALPWEVLLE 407 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH--H--------------HHHHhHHHHHhcCChHHHHHHHHhCCHHHHhc
Confidence 3344556777888887777666654332110 1 11222334455677887777777663 12
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCC------CCc--hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-
Q 035503 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGI------SPN--IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN- 467 (788)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~------~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~- 467 (788)
+..........+...|+++++...+..+...-- .+. ......+...+...|++++|...++.....-...+
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 333334445566778999999999988765311 111 11222333456789999999999998755311112
Q ss_pred ---hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC---CCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHc----CCC
Q 035503 468 ---LITWTTLISGLTQNSCGNEAILFFQEMLETGI---KPS--TTTITCALSACTDVASLRNGRAIHGYLIRH----DLC 535 (788)
Q Consensus 468 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 535 (788)
....+.+...+...|++++|...+.+.....- .+. ..++..+...+...|+++.|...+++.... +..
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 12345566677889999999999988874211 111 234445566778899999999998887663 211
Q ss_pred C---ChhHHHHHHHHHHHcCCHHHHHHHHhhCCC------C--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC
Q 035503 536 L---PTPIVTSLVDMYAKCGNIHQAKRVFDISPS------K--ELPVYNAMISGYAMHGLAVEALALFKNLQQKG--IDP 602 (788)
Q Consensus 536 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p 602 (788)
. ....+..++..+...|++++|...++.... + ....+..+...+...|++++|...+++..... ...
T Consensus 568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~ 647 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY 647 (903)
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 1 123355667778888999999998876532 1 12345557778889999999999998875521 111
Q ss_pred CHh--HH--HHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc----hHHHHHHHHhhcCChHHHHHHHHhCC-------
Q 035503 603 DSI--TF--TNILNACSHAGLVNEGLELFVGMFSDHQVKPSME----HFGCVVNLLSRCGNLDEALRVILTMP------- 667 (788)
Q Consensus 603 ~~~--~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------- 667 (788)
... .. ...+..+...|+.+.|..++...... . ..... ....++.++...|+.++|...++++.
T Consensus 648 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 648 HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 110 11 11123345588999999988765421 1 11111 13467778889999999999988871
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 668 CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 668 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
...+ ..+...++.++...|+.++|...+.+++++....
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 1111 2356667778899999999999999999987553
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=85.76 Aligned_cols=149 Identities=10% Similarity=0.117 Sum_probs=112.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC
Q 035503 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 655 (788)
+..|...|+++.+....+++.. |. ..+...++.++++..++..++. -+.+...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3457777887776544433221 11 0122366677788778777642 23447788899999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 656 LDEALRVILTM-PCDP-DAHIIGSLLSTC-VKSNE--TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 656 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
+++|...++++ ...| +...+..++.++ ...|+ .++|+.+++++++.+|+++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888 3344 566788888764 67676 5999999999999999999999999999999999999999999
Q ss_pred HHHHCCCc
Q 035503 731 IMKEKGLR 738 (788)
Q Consensus 731 ~~~~~~~~ 738 (788)
++++....
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99887653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.1e-08 Score=84.13 Aligned_cols=94 Identities=12% Similarity=-0.047 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
+..++..+...|++++|.+.|+.+ ... .+...|..++.++...|++++|+..|+++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566666666666666666665 222 345566677777777777777777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHCC
Q 035503 721 RWNEVSQVRDIMKEKG 736 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~ 736 (788)
++++|...++..++..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777766654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=81.77 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-
Q 035503 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM- 666 (788)
Q Consensus 589 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 666 (788)
..+|++.++. .|+. +..+..++...|++++|...|+.+. .+.|+ ...+..++.++.+.|++++|...|+++
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566666553 4553 4456677888999999999999886 44554 677778999999999999999999888
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 667 PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 667 ~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
.. +.+...+..++.++...|++++|+..++++++..|+++..+...+.+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33 34667899999999999999999999999999999999999888877544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-07 Score=98.33 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=97.8
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHH
Q 035503 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-EHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIG 676 (788)
Q Consensus 600 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 676 (788)
...+...+..|.....+.|.+++|..+++.+. .+.|+. .....++..+.+.+++++|+..+++. ...|+. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 44456777777777778888888888888776 556764 44457777788888888888887777 445554 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.++.++.+.|++++|+.+|++++..+|+++.++..++.++.+.|+.++|...|++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666777788888888888888877888888888888888888888888888777554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-07 Score=90.85 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=139.5
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+.++.+| .+..+...|+-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHHH
Confidence 34444444444444444321 22233444444444444444444444444444444 44445555555555555555555
Q ss_pred HHHhhCCCCC-hhhHHHHH---------HHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 559 RVFDISPSKE-LPVYNAMI---------SGYAMHGLAVEALALFKNLQ-QKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 559 ~~~~~~~~~~-~~~~~~l~---------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
..++.-.... ...|.... ..+..........++|-++. ..+..+|+.....|.-.|--.|.+++|+..|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 5554211000 00000000 00111112233444444443 3443366666666766788888899999999
Q ss_pred HhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 628 VGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 628 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+.++ .++|+ ...|+.|+..+....+.+||+..|.++ ...|.- .++.+++-.|...|.+++|.+.|-.++.+.+.
T Consensus 454 ~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 8887 55665 567788888888888999999888887 566664 57888888899999999999998888887655
Q ss_pred C----------CchHHHHHHHHHhCCCcHHHH
Q 035503 705 N----------PGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 705 ~----------~~~~~~l~~~~~~~g~~~~A~ 726 (788)
+ ..+|..|=.++..+++.|-+.
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 1 135666666666666665333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-06 Score=83.00 Aligned_cols=198 Identities=8% Similarity=0.029 Sum_probs=113.8
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCH--HHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG-NIHQAKRVFDISPS---KELPVYNAMISGYAMHGLA--VEALAL 591 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~--~~A~~~ 591 (788)
..++|.....++++..| .+..+|+....++...| ++++++..++.+.. ++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 33444444444444444 33334444444444444 34555555554432 3334455444444444442 456666
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhc---CC----hHHHHHHHH
Q 035503 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRC---GN----LDEALRVIL 664 (788)
Q Consensus 592 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~~ 664 (788)
++++++.. +-|..+|.....++...|+++++++.++++++.. .-+...|+....++.+. |+ .++++++..
T Consensus 131 ~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 66666643 2355666666666667777777777777776431 12344454444444333 22 245666664
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 665 TM-PCDP-DAHIIGSLLSTCVKS----NETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 665 ~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
++ ...| +...|+.+...+... ++..+|...+.++++.+|+++.++..|+++|...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 44 3333 456788888887763 3456788889999888999999999999999864
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-07 Score=78.92 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=87.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
.+....++..+...|++++|..+|+-. ..+| +...|..|+..|...|++++|+..|.++..++|++|.++.+++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 556667888889999999999999888 3344 56789999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
..|+.+.|.+.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999987654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-06 Score=88.37 Aligned_cols=219 Identities=12% Similarity=0.069 Sum_probs=167.6
Q ss_pred CCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 035503 364 QSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443 (788)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 443 (788)
+|-......+.+.+...|-...|..+|++. ..|..++.+|...|+..+|..+..+..+. +||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 555566778889999999999999999865 57788888999999999999998888774 78888998888888
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHH
Q 035503 444 LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGR 523 (788)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 523 (788)
....-+++|.++++..... .-..+.....+.++++++...|+.-.+.. +....+|-....+..+.++++.+.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8888888898888876332 11112222334788888888888877642 334567777777777888888888
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 524 AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
+.|...+...| .+...|+.+..+|.+.|+..+|...+.+..+ .+...|...+....+.|.+++|++.+.++...
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88888888877 7777888888888888888888888877665 33445667777778888888888888887653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=91.38 Aligned_cols=218 Identities=9% Similarity=0.024 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHH
Q 035503 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMIS 577 (788)
Q Consensus 500 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 577 (788)
+|-...-..+...+...|-...|..+++++. .+...+.+|+..|+..+|..+..+..+ ++...|..+++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3333334445555666666777777766544 344467777777777777776654433 55566777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCCh
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 656 (788)
......-+++|.++.+..... .-..+.......++++++.+.|+.-. .+.|- ..+|..++.+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 776666677777777663221 11112222234678888888887665 33443 56777788888888888
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 657 DEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 657 ~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
..|.+.|... ..+||. ..|+++..+|.+.|+-.+|...++++++-+-++..+|.+..-+..+-|.|++|.+.+.++..
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888888776 566665 47999999999999999999999999988888888888888888999999999998888866
Q ss_pred CC
Q 035503 735 KG 736 (788)
Q Consensus 735 ~~ 736 (788)
..
T Consensus 616 ~~ 617 (777)
T KOG1128|consen 616 LR 617 (777)
T ss_pred hh
Confidence 54
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-06 Score=76.69 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCc
Q 035503 645 CVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
.++....+.|++.+|...+.++ ..++|...|+.++.+|.+.|+++.|...|.+++++.|+++.+..+|+..|.-.|+.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 3444444455555555444444 22334444444444455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 035503 723 NEVSQVRDIMKE 734 (788)
Q Consensus 723 ~~A~~~~~~~~~ 734 (788)
++|..++.....
T Consensus 185 ~~A~~lll~a~l 196 (257)
T COG5010 185 EDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHHHHh
Confidence 555554444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-06 Score=80.57 Aligned_cols=183 Identities=16% Similarity=0.101 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-Chh---hH
Q 035503 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIHQAKRVFDISPS--K-ELP---VY 572 (788)
Q Consensus 501 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~ 572 (788)
.....+......+...|+++.|...++.++...+... ...+..++.+|...|++++|+..++.+.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456777788889999999999999999999876322 35678899999999999999999997754 2 222 46
Q ss_pred HHHHHHHHhC--------CCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchH
Q 035503 573 NAMISGYAMH--------GLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHF 643 (788)
Q Consensus 573 ~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 643 (788)
..+..++... |++++|++.|+++... .|+.. ....+... +..... . . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~------~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNR------L-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHH------H-H--------HHH
Confidence 6666777655 7899999999999875 45432 22222111 000000 0 0 112
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM----PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..++..|.+.|++++|+..++++ +..| ....+..++.++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677888999999999998887 2223 3467889999999999999999988888776664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=76.66 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=86.7
Q ss_pred HHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 626 LFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 626 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
.+++++ ...|+ ......++..+...|+.++|.+.++.+ .. +.+...|..++..+...|++++|+..++++++.+
T Consensus 5 ~~~~~l---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLL---GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHH---cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444 44554 345557778888888888888888777 32 3356778888888989999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 703 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-06 Score=76.13 Aligned_cols=153 Identities=11% Similarity=0.113 Sum_probs=114.2
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHH
Q 035503 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 624 (788)
+-.|...|+++.+....+.+..+. ..+...++.++++..+++.+..+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777776655443322211 01223667788888888877764 457788888888999999999999
Q ss_pred HHHHhcHhhcCCCCC-cchHHHHHHHH-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035503 625 ELFVGMFSDHQVKPS-MEHFGCVVNLL-SRCGN--LDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHL 698 (788)
Q Consensus 625 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (788)
..|+++. .+.|+ ...+..++.++ .+.|+ .++|.++++++ ...| +...+..++..+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999887 45565 67777888864 67777 59999999998 3444 5668888999999999999999999999
Q ss_pred HhcCCCCCchH
Q 035503 699 LQLEPDNPGNY 709 (788)
Q Consensus 699 ~~~~p~~~~~~ 709 (788)
++.+|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99988855443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-05 Score=88.56 Aligned_cols=226 Identities=12% Similarity=0.134 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHc-CCC---CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CC-hhhHHHH
Q 035503 502 STTTITCALSACTDVASLRNGRAIHGYLIRH-DLC---LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-KE-LPVYNAM 575 (788)
Q Consensus 502 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 575 (788)
+...|...+.-....++.++|+++.++++.. ++. --..+|.+++++...-|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3456677777777888888888888887763 221 2234677777777777888888999988776 33 3467889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc---chHHHHHHHHhh
Q 035503 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM---EHFGCVVNLLSR 652 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~ 652 (788)
...|.+.+.+++|.++|+.|.++ +......|...+..+.+.++.+.|..+++++++. -|.. ......+.+-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999886 4556778888899999999999999999998853 3553 444566777789
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHh-CCCcHHHHH
Q 035503 653 CGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE--PDNPGNYVALSNAYAA-SGRWNEVSQ 727 (788)
Q Consensus 653 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~-~g~~~~A~~ 727 (788)
.|+.+.+..+|+..- .+.-...|+.++..-.++|+.+.++.+|++++.+. |.....++..---|.+ .|+-+.+..
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 999999999998872 22345699999999999999999999999998864 5555555544334444 466544444
Q ss_pred HHHH
Q 035503 728 VRDI 731 (788)
Q Consensus 728 ~~~~ 731 (788)
+-.+
T Consensus 1693 VKar 1696 (1710)
T KOG1070|consen 1693 VKAR 1696 (1710)
T ss_pred HHHH
Confidence 4333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-06 Score=74.83 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=80.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcC
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG 654 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 654 (788)
+-..+...|+-+....+..+.... ..-|......++......|++.+|+..+.++.. .-++|.+.++.++-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334444455555555544443221 111223333344555555666666666655542 23344555556666666666
Q ss_pred ChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHH
Q 035503 655 NLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729 (788)
Q Consensus 655 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 729 (788)
++++|..-|.++ .. ..++...++++-.+.-.||.+.|+..+..+....+.+..+-.+|+.+....|+.++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666665555554 22 2233455566666666666666666666666655556666666666666666666665544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.6e-05 Score=74.27 Aligned_cols=222 Identities=11% Similarity=0.082 Sum_probs=122.2
Q ss_pred hCCCchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH--H
Q 035503 480 QNSCGNEAILFFQEMLETGIKPSTT-TITCALSACTDVA-SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI--H 555 (788)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 555 (788)
..++.++|+.+..++++ +.|+.. +|.....++...| .++++...++.+++.++ .+..+|+....++.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 34556666666666665 334432 3333333444444 45666666666666666 4444555555555555542 4
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc---Cc----HHHHHH
Q 035503 556 QAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA---GL----VNEGLE 625 (788)
Q Consensus 556 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~----~~~A~~ 625 (788)
+++..++.+.+ .+..+|+....++...|+++++++.++++++.+. -|...|+.....+.+. |. .++++.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 55666654443 4456677777777777777777777777777652 2444555444444333 22 245566
Q ss_pred HHHhcHhhcCCCCC-cchHHHHHHHHhhc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC------------
Q 035503 626 LFVGMFSDHQVKPS-MEHFGCVVNLLSRC----GNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSN------------ 686 (788)
Q Consensus 626 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g------------ 686 (788)
+...++. ..|+ ...+..+..+|... ++..+|.+++.+. ...| .+.....|+..|....
T Consensus 205 y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 205 YTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 6655553 3343 55666666666552 3445677776665 2233 3445666666665421
Q ss_pred ------CHHHHHHHHHHHHhcCCCCCch
Q 035503 687 ------ETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 687 ------~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
..++|..+++.+-+.||--...
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ir~~y 309 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADPMRRNY 309 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCcHHHHH
Confidence 2355666666665555553333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-05 Score=85.45 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
++..+..-|...+++++++.+++.+++.+|+|..+...++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34444445556666666666666666666666666666666655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-05 Score=76.34 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH-HHHhhccCcHHHHHHHHHhcHhhcCCCCCcc-hHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI-LNACSHAGLVNEGLELFVGMFSDHQVKPSME-HFGCVVN 648 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~ 648 (788)
.+-...-.+...|.+++|+..++.++.. .|+...|..+ ...+...|+.++|.+.++++. ...|+.. ....++.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHH
Confidence 3444444555677888888888887764 4555444443 446778888888888888776 4556643 3347788
Q ss_pred HHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 649 LLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
+|.+.|++.+|+..++.. ..+.|+..|..|..+|...|+..+|... .+..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 888888888888888776 2345667888888888888877766543 466777788888888
Q ss_pred HHHHHHHHCCCccCC
Q 035503 727 QVRDIMKEKGLRKNP 741 (788)
Q Consensus 727 ~~~~~~~~~~~~~~~ 741 (788)
..+....++.-...+
T Consensus 446 ~~l~~A~~~~~~~~~ 460 (484)
T COG4783 446 IFLMRASQQVKLGFP 460 (484)
T ss_pred HHHHHHHHhccCCcH
Confidence 888887776543333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0035 Score=67.63 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=132.5
Q ss_pred cCChHHHHHHhccCC--CCCcccHHHHHHHH--HcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHH
Q 035503 129 CDALDVASRLFCRLR--VKNVFSWAAIIGLN--CRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAV 204 (788)
Q Consensus 129 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 204 (788)
.+++..|.+..+.+. .||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 345555555555542 2332 344455544 5678888888777776655444 666777777777788888888888
Q ss_pred HHHHHHHcCCCchhhhhHHHHHhHhcCChH----HHHHHHhcCCCCCcchHHHHHHHHHHC-CCh---------hHHHHH
Q 035503 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLE----EARKVFDGMIARNVVAWNSMIVGYVQN-GLN---------EEAIRV 270 (788)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~a~~~ 270 (788)
+++..... |+......+..+|.|.+.+. .|.++++..+++--..|+ +++..... ... .-|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHH
Confidence 88877654 44777777778888877664 356666655544333343 44444332 111 234455
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCC
Q 035503 271 FYEMTLEG-VEPTRVSVTSILSASANLDALDEGKQAHAVAVIN-GMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERD 348 (788)
Q Consensus 271 ~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 348 (788)
++.+.+.+ -.-+..-...-+..+...|..++|..++..-... -...+...-+.-++.+...+++.+-.++-.++.+++
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55555543 1112222223334455678889998888544433 334455556777888899999988888777776655
Q ss_pred chhHHH
Q 035503 349 IVTWNL 354 (788)
Q Consensus 349 ~~~~~~ 354 (788)
..-|..
T Consensus 257 ~Ddy~~ 262 (932)
T KOG2053|consen 257 NDDYKI 262 (932)
T ss_pred CcchHH
Confidence 433333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-07 Score=56.24 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=17.5
Q ss_pred CCCCChhhHHHHHHHHHhCCCchHHHHHHHHH
Q 035503 463 GVQPNLITWTTLISGLTQNSCGNEAILFFQEM 494 (788)
Q Consensus 463 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (788)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-05 Score=68.03 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=106.3
Q ss_pred CCchHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHH
Q 035503 482 SCGNEAILFFQEMLE---TG-IKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556 (788)
Q Consensus 482 g~~~~A~~~~~~m~~---~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (788)
.+.++.++++.+++. .| ..++.. .+..++-+....|..+.|..+++.+...-| .+..+...-+..+..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa------ 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEA------ 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHH------
Confidence 345566666666553 12 334432 333445555556666666666666555443 333333333333333
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC
Q 035503 557 AKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636 (788)
Q Consensus 557 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 636 (788)
.|++++|+++|+..++.+ +.|.+++.--+...-..|+.-+|++.+....+ .+
T Consensus 99 -------------------------~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F 150 (289)
T KOG3060|consen 99 -------------------------TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KF 150 (289)
T ss_pred -------------------------hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--Hh
Confidence 455555555555555543 23444444444444455555566666655554 33
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
..|.+.|..+.+.|...|++++|.-.++++ ..+-++..+..+...+...| +.+.|.+.|.+++++.|.+...++-
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 455666666666666666666666666665 22334445555666544443 6677888888888888865555443
Q ss_pred H
Q 035503 712 L 712 (788)
Q Consensus 712 l 712 (788)
+
T Consensus 231 I 231 (289)
T KOG3060|consen 231 I 231 (289)
T ss_pred H
Confidence 3
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0057 Score=66.12 Aligned_cols=158 Identities=10% Similarity=-0.002 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035503 436 WNSVILGFLRNGQMNE---AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA 512 (788)
Q Consensus 436 ~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (788)
.+.|+..+-+.++... |+-+++.-... -+-|..+--.+|..|+-.|-+..|.++|+.+--..+.-|...+. ++..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 4566777777777662 33333332222 01133333456777888888888888888876555555544432 3344
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHh---hCCCCC----hhhHHHHHHHHHhCCCH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD---ISPSKE----LPVYNAMISGYAMHGLA 585 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~ 585 (788)
+...|.+..+...+....+.--..-...-..++.+ .+.|.+.+..+... ++.... ..+=+..++..+..++.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 55566777777776666553221112222222333 35555555554442 222111 11234456666677777
Q ss_pred HHHHHHHHHHH
Q 035503 586 VEALALFKNLQ 596 (788)
Q Consensus 586 ~~A~~~~~~m~ 596 (788)
++-...+..|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 77777766664
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.8e-07 Score=54.88 Aligned_cols=34 Identities=29% Similarity=0.765 Sum_probs=28.8
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 035503 427 EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460 (788)
Q Consensus 427 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (788)
.|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888899999999999999999888888873
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-05 Score=69.83 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=128.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH-HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN-ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
|..++-+....|+.+.|...++++... + |...-...+-. -+...|++++|+++|+.++.+. +.|..++..=+..+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 445555667788999999999998775 3 55443333322 3677899999999999998652 33455565666667
Q ss_pred hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC---CcHHH
Q 035503 651 SRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG---RWNEV 725 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 725 (788)
...|+.-+|++-+.+. ....|...|.-+...|...|++++|.-++++++-..|.++..+..++++++-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888998887776 356789999999999999999999999999999999999999999999988877 45578
Q ss_pred HHHHHHHHHCCCc
Q 035503 726 SQVRDIMKEKGLR 738 (788)
Q Consensus 726 ~~~~~~~~~~~~~ 738 (788)
.++|.+.++..++
T Consensus 211 rkyy~~alkl~~~ 223 (289)
T KOG3060|consen 211 RKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHhChH
Confidence 8899988887653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00027 Score=64.90 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh---
Q 035503 539 PIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS--- 615 (788)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--- 615 (788)
.....-+..|+..|++++|.+.......-+....+ +.++.+..+.+-|.+.+++|.+- .+..|.+.|..++.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence 33334455566667777776666653322222222 23445555666666666666652 23444444444332
Q ss_pred -ccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 616 -HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 616 -~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
..+.+.+|.-+|+++.. +..|++.+.+..+.+....|++++|..+++++
T Consensus 184 ~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred ccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 23455666666666643 24455555555555555555555555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0065 Score=61.82 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCL-PTPIVTSLVDMYAKCGNIHQAKRVFD 562 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (788)
.+.....+++++..-..--..+|...+....+...+..|..+|.++.+.+..+ +..+..++++.|| .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555566666543222223455666666667777777888888877766544 5556666666554 466777777777
Q ss_pred hCCC--CChhhH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHhcHhhcC--
Q 035503 563 ISPS--KELPVY-NAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGLVNEGLELFVGMFSDHQ-- 635 (788)
Q Consensus 563 ~~~~--~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-- 635 (788)
--.+ +|...| ...++-+...++-..|..+|++.+..++.|+. ..|..++.--+.-|+...++++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 4433 444433 45666667777777777788877776555543 5677777766777777777777776655443
Q ss_pred CCCCcchHHHHHHHHhhcCCh
Q 035503 636 VKPSMEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 636 ~~p~~~~~~~l~~~~~~~g~~ 656 (788)
..+...+-..+++.|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 333333444455555444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00028 Score=78.42 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
++-.+..+|-+.|+.++|..+++++++.. +-|..+.|.+...|... +.++|..++.+.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 44445555555555555555555555543 33444555555555555 555555555444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.2e-05 Score=75.23 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=106.1
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 689 (788)
.+...|++++|+..++.+++ ..|+...|. ..++.+.+.++.++|.+.++++ ...|+ ...+.+++.++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 45678999999999999874 457655554 7889999999999999999998 46666 567889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+|+..++..+..+|+++..|..|+.+|..+|+..+|...+.+.....
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999888876543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=64.38 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-CcHHHHHHHHHHHHCC
Q 035503 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG-RWNEVSQVRDIMKEKG 736 (788)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 736 (788)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|...+++.++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999999999999 7999999999987653
|
... |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-05 Score=68.30 Aligned_cols=115 Identities=14% Similarity=0.050 Sum_probs=86.7
Q ss_pred HHHHHHHcCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 035503 591 LFKNLQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC 668 (788)
Q Consensus 591 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 668 (788)
.+++.+.. .|+ ......+...+...|++++|.+.++.+... .+.+...+..++..+.+.|++++|..+++++ ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 443 344556666788889999999999888642 1234667778888899999999999888887 33
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 669 -DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 669 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
+.+...+..++..+...|++++|+..++++++.+|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 34466788888899999999999999999999999976643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0002 Score=78.91 Aligned_cols=208 Identities=15% Similarity=0.116 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHcCChhHH-HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 400 LWNTLLAAYADLGRSGEA-SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
....+=.+....|..++| .+++.++.+ ++....+.....+++.-...... ....+...+..|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHH
Confidence 344444455666776666 445554443 22222222222333322222222 2345688889999999
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA 557 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (788)
.+.|.+++|..+++...+ +.|+.. ....+...+.+.+++++|....++++...| .+......++.++.+.|++++|
T Consensus 97 ~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchHHH
Confidence 999999999999999998 567754 566677888999999999999999999998 7888889999999999999999
Q ss_pred HHHHhhCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 558 KRVFDISPSKE---LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 558 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
..+|+++..++ ..+|..+..++...|+.++|...|++..+.. .|....|+.++. +...-..+++++
T Consensus 174 ~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~ 242 (694)
T PRK15179 174 DACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHc
Confidence 99999887533 4688889999999999999999999988763 455555555442 333334555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-05 Score=76.27 Aligned_cols=272 Identities=10% Similarity=-0.004 Sum_probs=163.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhcc
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPST-TTITCALSACTDV 516 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~ 516 (788)
.....+.+..++..|+..+....+... .+..-|..-...+...|++++|+--.++-.+ ++|.. ......-.++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhh
Confidence 345677888888888888888877633 2466677777777778888888776666554 33432 2344444555555
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHH-HHHHHhCCCHHHHHH
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-----KELPVYNAM-ISGYAMHGLAVEALA 590 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-~~~~~~~g~~~~A~~ 590 (788)
++..+|...++.-. .+ ....|+..++.+.. |....|..+ ..++.-.|++++|..
T Consensus 131 ~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 55555555554100 00 11122222222221 111233322 235566777777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-------------HHHHHHhhcCChH
Q 035503 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-------------CVVNLLSRCGNLD 657 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-------------~l~~~~~~~g~~~ 657 (788)
.--..+... ..+......-..++-..++.+.|+..|++.+ .+.|+...-. .-++-..+.|++.
T Consensus 191 ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 191 EAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 666655432 1122222222223455677777888777665 4455532221 1123456778888
Q ss_pred HHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 658 EALRVILTM-PC-----DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 658 ~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+|.+.|.+. .. +|++..|.....+..+.|+.++|+.-.+.+++++|.-..+|...++++...++|++|.+.+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776 23 344455666666677788888888888888888888888888888888888888888888887
Q ss_pred HHHCC
Q 035503 732 MKEKG 736 (788)
Q Consensus 732 ~~~~~ 736 (788)
..+..
T Consensus 347 a~q~~ 351 (486)
T KOG0550|consen 347 AMQLE 351 (486)
T ss_pred HHhhc
Confidence 76544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-05 Score=79.60 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=83.9
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNE 687 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~ 687 (788)
|+..+...++++.|+.+++++.+. .|+ ....++..+...++-.+|.+++.+. . .+.+...+...+..|...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 344444455566666666655432 132 3334555555555666666665555 1 22345566667777889999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
++.|+.+++++.+..|++..+|..|+.+|...|++++|+-.++.+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=75.07 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=73.6
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCCcchH-HHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHF-GCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~ 690 (788)
..+.+++++|+..|.+++ .+.|+..+| ..-+.+|.+.|.++.|.+-.+.+ ..+|.. .+|..|+.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 446677777777777766 555654443 36667777777777777766665 344443 477788888888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcH
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 723 (788)
|++.|+++++++|++......|-.+-.+.+.-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 888888888888888777777766655555444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.4e-05 Score=67.71 Aligned_cols=115 Identities=16% Similarity=0.057 Sum_probs=62.6
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CDPDA----HIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 690 (788)
.++...+...++.+...++-.|- ......++..+...|++++|...|+.+. ..|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555543321111 1222245555666666666666666652 11222 234445566666677777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
|+..++.+ ...+-.+..+..+|++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77666552 223334556666777777777777777777653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-06 Score=61.51 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++..+...|++++|+..++++++.+|+++.++..++.++...|++++|..+++++++..+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567788999999999999999999999999999999999999999999999999887653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0018 Score=59.72 Aligned_cols=153 Identities=11% Similarity=0.052 Sum_probs=81.5
Q ss_pred HHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHH
Q 035503 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----NGQMN 450 (788)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~ 450 (788)
..|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.+. -+..|.+.|..++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 33444444455444444321 2222222233445556667777777777653 244455555555443 34566
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHH-HHHHHHHH
Q 035503 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN-GRAIHGYL 529 (788)
Q Consensus 451 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~ 529 (788)
+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+... ..++.++..++-+....|...+ -.+...++
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 677777777553 35566666666666777777777777777776653 3445555555555445554433 33444444
Q ss_pred HHcCC
Q 035503 530 IRHDL 534 (788)
Q Consensus 530 ~~~~~ 534 (788)
....+
T Consensus 269 k~~~p 273 (299)
T KOG3081|consen 269 KLSHP 273 (299)
T ss_pred HhcCC
Confidence 44443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.8e-06 Score=78.27 Aligned_cols=281 Identities=14% Similarity=0.091 Sum_probs=153.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCh----hhHHHHHHHHHhCCCchHHHHHHHHHH--hC--CCCC-CHHHHHHHHHH
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNL----ITWTTLISGLTQNSCGNEAILFFQEML--ET--GIKP-STTTITCALSA 512 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~--~~--~~~p-~~~~~~~ll~~ 512 (788)
-+++.|+......+|+...+.|.. |. ..|..|..+|.-.+++++|+++-..=+ .+ |-+. ...+-..+...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478888888888888888777643 32 345566667777777777776643211 10 1000 11122223333
Q ss_pred hhccCchHHHHHHHHHH----HHcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHH
Q 035503 513 CTDVASLRNGRAIHGYL----IRHDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVE 587 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 587 (788)
+-..|.+++|.-+..+- .+.|- .....++..++..|...|+.-.-.. + .+...++.=+ ...++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~-----p-ee~g~f~~ev-----~~al~~ 173 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA-----P-EEKGAFNAEV-----TSALEN 173 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC-----h-hhcccccHHH-----HHHHHH
Confidence 34445555554443322 22221 1233344555555554443211000 0 0000010000 001223
Q ss_pred HHHHHHHHH----HcCC-CCCHhHHHHHHHHhhccCcHHHHHHHHHhc---HhhcCCCCC-cchHHHHHHHHhhcCChHH
Q 035503 588 ALALFKNLQ----QKGI-DPDSITFTNILNACSHAGLVNEGLELFVGM---FSDHQVKPS-MEHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 588 A~~~~~~m~----~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 658 (788)
|.++|.+-+ ..|- -..-..|..|.+.|.-.|+++.|+...+.- .+++|-+.. ...+..|++++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 334443311 1110 012244666666677778888888766542 233443322 4567788888888889988
Q ss_pred HHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhCCCcHH
Q 035503 659 ALRVILTM--------PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE------PDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 659 A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
|.+.|+.. ..........+|++.|....+++.|+...++-+.+. -....+++.|+++|-..|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 88888664 112334566678888888888888888887765532 2246788899999999999998
Q ss_pred HHHHHHHHHH
Q 035503 725 VSQVRDIMKE 734 (788)
Q Consensus 725 A~~~~~~~~~ 734 (788)
|......-++
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 8877665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=66.00 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTMP-CDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALS 713 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 713 (788)
++..++..+.+.|++++|.+.+.++. ..|+ ...+..++.++...|+++.|+..+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44556666667777777777776662 2222 2355667777788888888888888888877774 45677788
Q ss_pred HHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 714 NAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 714 ~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++.+.|++++|...++.+.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 888888888888888888777653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0094 Score=58.08 Aligned_cols=275 Identities=15% Similarity=0.148 Sum_probs=177.2
Q ss_pred cCCHHHHHHHHHHhhhCCCCCChhhHHHHHH--HHHhCCCchHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCchHH
Q 035503 446 NGQMNEAKDMFLQMQSLGVQPNLITWTTLIS--GLTQNSCGNEAILFFQEMLETGIKPSTT--TITCALSACTDVASLRN 521 (788)
Q Consensus 446 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~ 521 (788)
.|+-..|.++-.+..+. +..|....-.++. +-.-.|+++.|.+-|+.|.. .|... -+..+.-...+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 45666666655544211 1123333333332 33456888888888888875 33322 23334444466788888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC-----CCChhh--HHHHHHHH---HhCCCHHHHHHH
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-----SKELPV--YNAMISGY---AMHGLAVEALAL 591 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~l~~~~---~~~g~~~~A~~~ 591 (788)
|..+-+.....-+ .-.......+...+..|+|+.|+++++.-. ++++.- -..|+.+- .-.-+...|...
T Consensus 173 Ar~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 8888888887776 456677788888999999999999987433 344321 11222211 112345566666
Q ss_pred HHHHHHcCCCCCHhHHH-HHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----
Q 035503 592 FKNLQQKGIDPDSITFT-NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM---- 666 (788)
Q Consensus 592 ~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 666 (788)
-.+..+ +.||..--. .-..++.+.|+..++-.+++.+- +..|.+.+. ..|.+..--+.++.-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIA----LLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHH
Confidence 555444 566654332 23446889999999999999887 445666543 3444333333344333333
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC-CCcHHHHHHHHHHHHC
Q 035503 667 PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS-GRWNEVSQVRDIMKEK 735 (788)
Q Consensus 667 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 735 (788)
..+|+ .........+....|++..|..-.+.+....|. ..+|..|+++-... |+-.++...+-+....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 23444 456777888889999999999999999999999 78899999997665 9999999988876654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-06 Score=65.87 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=56.3
Q ss_pred cCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHH
Q 035503 653 CGNLDEALRVILTM----PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 653 ~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 728 (788)
.|++++|+.+++++ +..++...|..++.++.+.|++++|+.++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666 1112445666678888888888888888888 777777777777888888888888888888
Q ss_pred HHH
Q 035503 729 RDI 731 (788)
Q Consensus 729 ~~~ 731 (788)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-05 Score=62.72 Aligned_cols=94 Identities=29% Similarity=0.305 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
+..++..+...|++++|...++++ ...| +...+..++..+...|++++|+..++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677778888888888888776 2333 34667778888888899999999999999999998889999999999999
Q ss_pred CcHHHHHHHHHHHHCC
Q 035503 721 RWNEVSQVRDIMKEKG 736 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~ 736 (788)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00024 Score=62.38 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc----hHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPD---SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME----HFG 644 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~ 644 (788)
|..++..+ ..++...+...++++.... +.+ ......+...+...|++++|...|+.+... . |+.. ...
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~l 89 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELKPLARL 89 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHHH
Confidence 33444444 4788888888888888763 222 123333445678889999999999988754 2 3332 334
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMPC-DPDAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
.|+..+...|++++|+..++.... ...+..+...+.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 678888999999999999988643 2334567778888999999999999998874
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=50.71 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCc
Q 035503 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDN 182 (788)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 182 (788)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00025 Score=71.98 Aligned_cols=124 Identities=11% Similarity=0.065 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
..|+..+...++++.|+.+|+++.+. ++.....++..+...++..+|.+++++.++. .+-+...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER----DPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 34455556677788888888888766 3344555777777777788888888888764 233555555555667778
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
++.+.|..+.+++++..| .+...|..|+.+|.+.|+++.|+..++.++-
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888777 6777888888888888888888888887763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.9e-05 Score=70.06 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 637 KPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKS---NETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
+-|.+.|..|+..|.+.|+.+.|...|.++ .. .+++..+..++.++..+ .+..++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445888999999999999999999999887 33 34566777787775433 36688999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCCCccCC
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNP 741 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 741 (788)
|+..++..|++.+|...++.|++..+...|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999998765544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=50.23 Aligned_cols=35 Identities=40% Similarity=0.666 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCH
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTR 283 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 283 (788)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.7e-05 Score=77.20 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=89.4
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSN 686 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 686 (788)
....+...|++++|+.+|+++++ +.|+ ...|..++.+|.+.|++++|+..++++ ...| +...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34557788999999999999984 4555 667779999999999999999999988 3444 4567888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
++++|+..++++++++|+++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888776665444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.3e-05 Score=64.51 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=84.2
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 635 QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 635 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
|+.++ .+.....+.-+...|++++|..+|.-+- ..-+...|..|+..|...+++++|+..|..+..++++||.+.+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 2333455666778999999999998872 23456689999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHH
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+..|...|+.+.|...|+.+.+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998877
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.9e-05 Score=67.68 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=71.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTMP-CDP---D-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
..+..++..+.+.|++++|...++++- ..| + ...+..++..+...|++++|+..++++++..|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566777777777777777777661 122 2 35778888888999999999999999999999999999999999
Q ss_pred HHhCCC--------------cHHHHHHHHHHHHCC
Q 035503 716 YAASGR--------------WNEVSQVRDIMKEKG 736 (788)
Q Consensus 716 ~~~~g~--------------~~~A~~~~~~~~~~~ 736 (788)
|...|+ +++|.+.+++....+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 988877 455666666655544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.7e-05 Score=71.98 Aligned_cols=91 Identities=23% Similarity=0.175 Sum_probs=81.4
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHH
Q 035503 647 VNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
+.-+.+.+++.+|+..|.++ ... .|++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|..+|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45677889999999999988 444 4567788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 035503 725 VSQVRDIMKEKGL 737 (788)
Q Consensus 725 A~~~~~~~~~~~~ 737 (788)
|++.|++.++..+
T Consensus 168 A~~aykKaLeldP 180 (304)
T KOG0553|consen 168 AIEAYKKALELDP 180 (304)
T ss_pred HHHHHHhhhccCC
Confidence 9999998887654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.032 Score=55.82 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=56.0
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 661 RVILTMPCDP----DAHIIGSLLST--CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 661 ~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
.++++.+..| +...-+.|..+ +..+|++.++.-...=+.++.| ++.+|..+|.+++...++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3444544433 33455666666 5789999999988888889999 6999999999999999999999999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=61.63 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=64.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLS 680 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 680 (788)
+..+...+...|++++|.+.|+.+.....-.+. ...+..++.++.+.|++++|...++.+ ...|+ ...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555666666666666666543211111 234445666666666666666666665 22222 346777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
++...|+.++|+..++++++..|+++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 888888888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.04 Score=56.34 Aligned_cols=210 Identities=9% Similarity=0.036 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC---CHHHHHHHHhhCCC---CC-hhhHHHHHHHHHhCCCHHHHHHH
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG---NIHQAKRVFDISPS---KE-LPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
.+++..+++..+..-...+..+|..+++.--..- +.+.....++++.. .+ ..+|..++..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666665444344445555544322222 24455555554433 22 24678888888888889999999
Q ss_pred HHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhCC--
Q 035503 592 FKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTMP-- 667 (788)
Q Consensus 592 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-- 667 (788)
|.+..+.+..+ +.....+++.- --.++.+-|.++|+.=++.+ +|...|. ..++.+...++-..|..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy-~cskD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEY-YCSKDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHH-HhcCChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 99999988777 55556666654 44678889999999776654 4544554 78888999999999999999982
Q ss_pred -CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 668 -CDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN----PGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 668 -~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
..|+ ...|..++.--..-||...+.++-++.....|.+ ...-..+..-|.=++++..-..-++.+
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 2344 3689999999899999999999999888877732 123334455566666665544444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.9e-05 Score=49.00 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC
Q 035503 147 VFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSP 180 (788)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 180 (788)
+.+|+.+|.+|++.|+++.|+.+|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999988877
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=48.42 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCC
Q 035503 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEP 281 (788)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 281 (788)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.6e-05 Score=57.66 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=54.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
...|...++++.|+.+++++++++|+++..+..++.+|.+.|++++|...++...+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45688999999999999999999999999999999999999999999999999987764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00018 Score=73.61 Aligned_cols=98 Identities=9% Similarity=0.013 Sum_probs=79.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhh
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSR 652 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 652 (788)
.....+...|++++|+++|+++++.. +.+...+..+..+|...|++++|+..+++++ .+.|+ ...|..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 44567788999999999999998864 3356778888889999999999999999997 44564 6778899999999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHH
Q 035503 653 CGNLDEALRVILTM-PCDPDAHII 675 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~~~~~ 675 (788)
.|++++|+..|+++ ...|+....
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999987 445554433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=66.20 Aligned_cols=93 Identities=14% Similarity=-0.025 Sum_probs=73.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
...+..++..+...|++++|+..++++ ...|+ ..+|..++..+...|++++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345556777777888888888888777 22222 3478889999999999999999999999999999999999999
Q ss_pred HHH-------hCCCcHHHHHHHHHH
Q 035503 715 AYA-------ASGRWNEVSQVRDIM 732 (788)
Q Consensus 715 ~~~-------~~g~~~~A~~~~~~~ 732 (788)
+|. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 988 888888666665544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.045 Score=54.76 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=112.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHH-------HHHhh-c---cCchHHHHHHHHHHHHcCCCC
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA-------LSACT-D---VASLRNGRAIHGYLIRHDLCL 536 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------l~~~~-~---~~~~~~a~~~~~~~~~~~~~~ 536 (788)
..++..++....+.++..+|.+.+.-+.- +.|+...-.-+ .+..+ . ..++..-..+|+.+...+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD- 374 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID- 374 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 34566677777777888888777776654 33433211111 11111 1 11233334455555555542
Q ss_pred ChhHHHH---HHHHHHHcCC-HHHHHHHHhhCCC---CChhhHHHHH----HHHHh---CCCHHHHHHHHHHHHHcCCCC
Q 035503 537 PTPIVTS---LVDMYAKCGN-IHQAKRVFDISPS---KELPVYNAMI----SGYAM---HGLAVEALALFKNLQQKGIDP 602 (788)
Q Consensus 537 ~~~~~~~---l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~m~~~~~~p 602 (788)
....... .+.-+.+.|. -++|+.+++.+.. -|...-|... ..|.+ .....+-+.+-+-..+.|++|
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 2222222 2344556666 7788888876554 4443333221 12221 122333344444455677776
Q ss_pred ----CHhHHHHHHHH--hhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 035503 603 ----DSITFTNILNA--CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668 (788)
Q Consensus 603 ----~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 668 (788)
+...-+.|.+| +...|++.++.-+-.-+. .+.|++.+|.-++-++....+++||.+++..+|.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 33445555555 456799988876655554 7789999999999999999999999999999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.3e-05 Score=58.30 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...|++++|+..++++++.+|++..++..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999999776654
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00088 Score=71.56 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..+..++......|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++.....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444444444455555555555555555553 4555555555555666555555555555444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0068 Score=59.58 Aligned_cols=214 Identities=11% Similarity=0.042 Sum_probs=131.7
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh---------------hHHHHH
Q 035503 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP---------------VYNAMI 576 (788)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l~ 576 (788)
++...|+.+.|..+--.+++.+. .+......-..++.-.++.+.|+..|++....|+. .|..-.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 34557788888888777777765 33333333344455567888888888877654332 233334
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhh
Q 035503 577 SGYAMHGLAVEALALFKNLQQK---GIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSR 652 (788)
Q Consensus 577 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 652 (788)
.-..+.|++..|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.-.+++. .+.|. ...|..-+.++..
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 4567889999999999887653 233455556666667888899999988888775 55555 4555666677778
Q ss_pred cCChHHHHHHHHhC-CCC--CC-HHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCCC-CCc-----
Q 035503 653 CGNLDEALRVILTM-PCD--PD-AHIIGSLLSTCVKSN---------------ETELAEYISEHLLQLEPD-NPG----- 707 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~--p~-~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p~-~~~----- 707 (788)
.+++++|.+.++++ ... +. ..++.....++.+.+ +.+--...-..++...|+ +..
T Consensus 334 le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~ea 413 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEA 413 (486)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHH
Confidence 88889998888877 211 21 223333333332221 112222222335556666 221
Q ss_pred --hHHHHHHHHHhCCCcHHHHHHH
Q 035503 708 --NYVALSNAYAASGRWNEVSQVR 729 (788)
Q Consensus 708 --~~~~l~~~~~~~g~~~~A~~~~ 729 (788)
-+-..+.+|...++..++.+..
T Consensus 414 E~kFkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 414 EAKFKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHHHHhcCHHHHhhcc
Confidence 2456777888888877776653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00069 Score=61.54 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD--SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCV 646 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 646 (788)
..+..+...+...|++++|+..|++.......+. ...+..+..++.+.|++++|+..+++++. ..|+ ...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 4567777788888888888888888776533322 35666777778888888888888887764 3343 4555567
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 647 VNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
+.+|...|+...+..-+..+ ...+++|...++++++.+|++ +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77777777766654333221 123678899999999999986 5455555544443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.5e-05 Score=54.86 Aligned_cols=61 Identities=26% Similarity=0.305 Sum_probs=50.1
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 646 VVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
++..+.+.|++++|++.|+++ ...| +...|..++.++...|++++|+..++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567788889999999998888 3445 456889999999999999999999999999999874
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0022 Score=61.37 Aligned_cols=180 Identities=15% Similarity=0.102 Sum_probs=108.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC--Chh----hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 035503 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPSK--ELP----VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI 610 (788)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 610 (788)
+.......+..+...|++++|.+.|+.+... +.. +.-.++.++.+.+++++|+..+++.++....-....+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3344445566666778888888888766542 221 2234667778888888888888888775322122233333
Q ss_pred HHHhhc--cC---------------c---HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 035503 611 LNACSH--AG---------------L---VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP 670 (788)
Q Consensus 611 l~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 670 (788)
+.+.+. .+ + ..+|+..|+++++.+ |+. .-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHH-
Confidence 333221 11 1 234555555555433 332 2233343333332100
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
-...-..++.-|.+.|.+..|+.-++.+++..|+. +.++..++.+|.+.|..++|.++.+.+.
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00111245666889999999999999999999884 5577888999999999999999887653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0035 Score=54.28 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=103.9
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC-CCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHH
Q 035503 600 IDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV-KPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP---DAHI 674 (788)
Q Consensus 600 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 674 (788)
..|+...-..|..+....|+..+|..+|++... |+ .-|......++.+....+++.+|...++++ ..+| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 356666666677888899999999999988864 44 345666678888888899999998888877 2112 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
...+.+.+...|.+++|+..++.++.-.|+ +......+..+.++|+.++|..-+..+.+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 566788899999999999999999999998 777788899999999999888766665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=56.47 Aligned_cols=92 Identities=13% Similarity=0.054 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
...-.+...+...|++++|..+|+-+... .| +..-|..|..+|...|++++|+..|..+. .+.|+ +..+-.++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHH
Confidence 33444555556666677777666666553 33 34455556666666677777777776664 33343 55555666
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 035503 648 NLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~ 666 (788)
.++...|+.++|.+.|+.+
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 6666666666666666554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00081 Score=58.09 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=97.2
Q ss_pred HHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM---PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 627 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
++++.++..+.|+...-..|+.++.+.|+..||...|++. ....|......+.++....+++..|...++++.+..|
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3344455567789888889999999999999999999998 3567888999999999999999999999999999998
Q ss_pred C--CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 704 D--NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 704 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
. .|.....++.+|...|++++|...|+....--+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 7 788999999999999999999999998877554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.4e-05 Score=47.93 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 694 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=71.08 Aligned_cols=143 Identities=11% Similarity=-0.003 Sum_probs=102.8
Q ss_pred hCCCCChhhHHHHHHHHHh--CC---CHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhcc--------CcHHHHHHHHH
Q 035503 563 ISPSKELPVYNAMISGYAM--HG---LAVEALALFKNLQQKGIDPDS-ITFTNILNACSHA--------GLVNEGLELFV 628 (788)
Q Consensus 563 ~~~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------g~~~~A~~~~~ 628 (788)
.....+..+|...+.+... .+ ....|+.+|++.++. .|+. ..+..+..++... ++...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3445677888888777543 33 367899999999885 5764 4555544444322 12334444444
Q ss_pred hcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 629 GMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 629 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
+.........++..|..++......|++++|...++++ ...|+...|..++..+...|+.++|...+++++.++|.++.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 43221123334567777777777889999999999998 56788888999999999999999999999999999999875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=9e-05 Score=57.79 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHH
Q 035503 582 HGLAVEALALFKNLQQKGID-PDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 659 (788)
.|++++|+.+++++.+.... |+...+..+..++.+.|++++|+.++++ . ...|. ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45566666666666554321 1233333355556666666666666655 1 22222 23333445555555555555
Q ss_pred HHHHH
Q 035503 660 LRVIL 664 (788)
Q Consensus 660 ~~~~~ 664 (788)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0023 Score=63.43 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=83.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc-CcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHH
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA-GLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNL 649 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~ 649 (788)
.+..|...|++..|-+.+.+ +...|... |++++|+++|+++..-+..... ...+..++..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34455556665555555444 44456666 7888888888887654432222 3345577888
Q ss_pred HhhcCChHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHH
Q 035503 650 LSRCGNLDEALRVILTMP---CD-----PDAH-IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG-----NYVALSNA 715 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~ 715 (788)
+.+.|++++|.+.|++.. .. .... .+...+-.+...||...|...+++....+|.... ....|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 899999999999998761 11 1121 2333444566779999999999999999987433 33344444
Q ss_pred HHh--CCCcHHHHHHHHH
Q 035503 716 YAA--SGRWNEVSQVRDI 731 (788)
Q Consensus 716 ~~~--~g~~~~A~~~~~~ 731 (788)
+.. ...+++|..-|+.
T Consensus 245 ~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHTT-CCCHHHHCHHHTT
T ss_pred HHhCCHHHHHHHHHHHcc
Confidence 443 2234445444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.4e-05 Score=45.11 Aligned_cols=31 Identities=35% Similarity=0.620 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHCCC
Q 035503 148 FSWAAIIGLNCRVGLSEKALIGFVEMQEDGV 178 (788)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 178 (788)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00069 Score=54.34 Aligned_cols=61 Identities=21% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
+..++..+...|++++|.+.++.. .. +.+...+..++..+...|+++.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 334444444445555555444443 11 12223555556666666666666666666666655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00082 Score=55.57 Aligned_cols=89 Identities=20% Similarity=0.028 Sum_probs=56.1
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMP---CDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD---NPGNYVALSNAY 716 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 716 (788)
.++.++-..|+.++|+.+|++.. .... ...+..++..+...|++++|+.++++.+...|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34455555666666666665551 1111 234555666677777777777777777777676 566666677777
Q ss_pred HhCCCcHHHHHHHHHHH
Q 035503 717 AASGRWNEVSQVRDIMK 733 (788)
Q Consensus 717 ~~~g~~~~A~~~~~~~~ 733 (788)
...|++++|...+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77777777777655433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0027 Score=57.39 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDP--DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
.|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..++++.. +.|+ ...+..++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~la 113 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 46666777777788888888887776543222 123566666777777888888888777763 2343 33444555
Q ss_pred HHHh
Q 035503 648 NLLS 651 (788)
Q Consensus 648 ~~~~ 651 (788)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00057 Score=65.84 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCC
Q 035503 649 LLSRCGNLDEALRVILTM-PCDPDA----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAASG 720 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g 720 (788)
.+.+.|++++|...|+.. ...|+. ..+..++.+|...|++++|+..|+++++..|++ +.++..++.+|...|
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 334456666666666555 122332 355666777777777777777777777777664 445666677777778
Q ss_pred CcHHHHHHHHHHHHCC
Q 035503 721 RWNEVSQVRDIMKEKG 736 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~ 736 (788)
++++|..+++.+++.-
T Consensus 232 ~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 232 DTAKAKAVYQQVIKKY 247 (263)
T ss_pred CHHHHHHHHHHHHHHC
Confidence 8888888877776654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=44.14 Aligned_cols=31 Identities=48% Similarity=0.762 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCC
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGV 279 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 279 (788)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00043 Score=69.79 Aligned_cols=67 Identities=13% Similarity=-0.017 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN---YVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+...|++++.+|...|++++|+..|+++++++|++..+ |++++.+|..+|+.++|...++++++.+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999998854 9999999999999999999999998863
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.074 Score=56.01 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=84.5
Q ss_pred cCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcCChhHHHHHHHH
Q 035503 230 CGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSASANLDALDEGKQAHAV 308 (788)
Q Consensus 230 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 308 (788)
.|.+++|++++-.+..+|.. |..+.+.|++-...++++.--.. .-..-...+..+...++....++.|.+.+..
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888777766543 45555666666655555431100 0001123444455555555555555555443
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHH
Q 035503 309 AVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQ 388 (788)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (788)
.-. ....+.++.+..++++-+.+-+.+.+... ..-.+.+++.+.|.-++|.+
T Consensus 822 ~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~s~-------------------llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 822 CGD---------TENQIECLYRLELFGELEVLARTLPEDSE-------------------LLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred ccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcccc-------------------hHHHHHHHHHhhchHHHHHH
Confidence 211 12344555555555555555555444333 56667777777777777777
Q ss_pred HHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 035503 389 VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQ 423 (788)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 423 (788)
.|-+...|. ..+..|...+++.+|.++-+.
T Consensus 874 a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 874 AYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 665554332 234566667777777766554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00016 Score=53.78 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=32.7
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 035503 652 RCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 713 (788)
..|++++|++.++++ . .+.+...+..++.+|...|++++|+..+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 345555555555554 1 1224445555666666666666666666666666666544444443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00027 Score=52.66 Aligned_cols=64 Identities=23% Similarity=0.218 Sum_probs=50.2
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSN-ETELAEYISEHLLQLEP 703 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 703 (788)
+..+..++..+.+.|++++|+..|+++ ...| +...|..++.++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445667777777788888888777776 3334 4567888888999998 79999999999999988
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00022 Score=47.11 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.+|..++.+|...|++++|++.++++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367889999999999999999999999999999999988875
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.002 Score=65.89 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=76.5
Q ss_pred HHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc-C-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 035503 357 ASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL-R-----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430 (788)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (788)
..|.+.+..+......+++......+++.+..++-+... + -..|..++++.|...|..++++.+++.=...|+-
T Consensus 56 ~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF 135 (429)
T PF10037_consen 56 KKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIF 135 (429)
T ss_pred HHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccC
Confidence 334444444444555556666666666666666655542 1 1234456777777777777777777776667777
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhC
Q 035503 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481 (788)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 481 (788)
||..++|.|++.+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 136 ~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777777777765555555555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=65.04 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+++++.-.|.+.+++..|+...+++++++|+|..+++.-+.+|...|+++.|+..|+++++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 4667777778888888888888888888888888888888888888888888888888887754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0096 Score=55.60 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHH
Q 035503 539 PIVTSLVDMYAKCGNIHQAKRVFDISPS--KEL----PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNI 610 (788)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 610 (788)
......+..+...|++++|++.|+.+.. |+. .+.-.++.++.+.|++++|+..+++++..- |+. ..+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHH
Confidence 3444455566666777777777765543 111 244556677777788888888887776642 322 112211
Q ss_pred HHHhh-------------ccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 035503 611 LNACS-------------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGS 677 (788)
Q Consensus 611 l~~~~-------------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 677 (788)
+.+.+ ..+...+|...|+.++..+ |+ .....+|...+..+... -...-..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~-------------S~y~~~A~~~l~~l~~~-la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY---PN-------------SEYAEEAKKRLAELRNR-LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----TT-------------STTHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC---cC-------------chHHHHHHHHHHHHHHH-HHHHHHH
Confidence 11111 1222345555555555443 32 22333343333332100 0011223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCCcHHHH
Q 035503 678 LLSTCVKSNETELAEYISEHLLQLEPDNP---GNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 726 (788)
++..|.+.|.+..|..-++.+++..|+.+ .++..++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 56678999999999999999999999954 46778889999999988443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=64.38 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=97.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHH
Q 035503 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474 (788)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 474 (788)
+......+++.+....+.+++..++.+.... ....-..|..+++..|.+.|..+.++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555667777777777888899988888765 22223445568999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
++.+.+.|++..|.++..+|...+...+..|....+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998877777777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0069 Score=50.14 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=48.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHH
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGIKPS--TTTITCALSACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYA 549 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 549 (788)
+..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+++......|. .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666666666666666554433 224444555566666666666666666554332 12233333444555
Q ss_pred HcCCHHHHHHHHhh
Q 035503 550 KCGNIHQAKRVFDI 563 (788)
Q Consensus 550 ~~g~~~~A~~~~~~ 563 (788)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.065 Score=51.42 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=31.0
Q ss_pred HHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHH
Q 035503 611 LNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVIL 664 (788)
Q Consensus 611 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 664 (788)
..-|.+.|.+..|+.-++.+++.+.-.|. .+....++.+|.+.|..++|.++..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 33466666666666666666665543333 3344455666666666666655543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.017 Score=57.25 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhh----CCCC-CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC-----CHH-H
Q 035503 438 SVILGFLRN-GQMNEAKDMFLQMQS----LGVQ-PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP-----STT-T 505 (788)
Q Consensus 438 ~ll~~~~~~-g~~~~A~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~ 505 (788)
.+...|... |++++|++.|++..+ .|.+ .-...+..+...+.+.|++++|.++|++....-... +.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344455566 778888888877632 2210 012445566777888888888888888876542221 111 2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCC--C--hhHHHHHHHHHHH--cCCHHHHHHHHhhCCCCChh
Q 035503 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCL--P--TPIVTSLVDMYAK--CGNIHQAKRVFDISPSKELP 570 (788)
Q Consensus 506 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 570 (788)
+...+-++...|+...|...++......|.. + ..+...|+.++-. ...+++|+.-|+.+.+.|..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 2333345556778888888888777654321 1 2344555666543 35577777777777776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0058 Score=60.26 Aligned_cols=134 Identities=10% Similarity=0.061 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-hhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA-CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
+|..++....+.+..+.|..+|++.+..+ .-+...|...... +...++.+.|..+|+..++.+ ..+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 57778888888888889999999987432 2234445444443 444677777999999988754 3456667788888
Q ss_pred HhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 650 LSRCGNLDEALRVILTMP-CDPDA----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
+.+.|+.+.|..+|+++- .-|.. ..|...+..-.+.|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 889999999999998882 22332 48999999989999999999999999999888433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.041 Score=50.23 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=81.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC----CCCcchHHHHHHHH
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQV----KPSMEHFGCVVNLL 650 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~p~~~~~~~l~~~~ 650 (788)
-...|...|..+.|-..+++.-. ....-++++|+++|++...-... ..-.+.+..+...|
T Consensus 97 As~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 34456666666655555554322 12344555666666554432111 11133445666778
Q ss_pred hhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHh
Q 035503 651 SRCGNLDEALRVILTMP-------CDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQL----EPDNPGNYVALSNAYAA 718 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~ 718 (788)
.+..+++||-..+.+-. .-|+. ..+...+-.+.-..|+..|+++++.--+. .|++..+..+|...|.
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 88888888877765541 11222 24555666677778999999999886653 4667778888877764
Q ss_pred CCCcHHHHHHH
Q 035503 719 SGRWNEVSQVR 729 (788)
Q Consensus 719 ~g~~~~A~~~~ 729 (788)
.|+.+++.+++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 56667666544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.006 Score=58.90 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=58.4
Q ss_pred hccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCH
Q 035503 615 SHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CDPD----AHIIGSLLSTCVKSNET 688 (788)
Q Consensus 615 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~ 688 (788)
.+.|++++|+..|+.+++.+.-.+- ...+..++.+|...|++++|...|+.+- ..|+ ...+..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4446666666666666544311111 2344566666666666666666666651 1122 34566667778888999
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q 035503 689 ELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~ 707 (788)
+.|+..|+++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999999999998654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0027 Score=62.58 Aligned_cols=96 Identities=15% Similarity=0.048 Sum_probs=81.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..|+.++.+.+++.+|+...++. . .+++...+..-+.+|...|+++.|+..|+++++++|+|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45668888999999999999998887 3 456677888888999999999999999999999999999999999998877
Q ss_pred CCCcHHH-HHHHHHHHHCC
Q 035503 719 SGRWNEV-SQVRDIMKEKG 736 (788)
Q Consensus 719 ~g~~~~A-~~~~~~~~~~~ 736 (788)
..++.+. .++|..|..+-
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7766655 77899887654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.006 Score=48.37 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCC--------HHHHHHHHHHhhhCCCCCChhhHH
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEGI-SPNIISWNSVILGFLRNGQ--------MNEAKDMFLQMQSLGVQPNLITWT 472 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~--------~~~A~~~~~~~~~~g~~~~~~~~~ 472 (788)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 7888888888777665432 233444555555555555555555
Q ss_pred HHHHHH
Q 035503 473 TLISGL 478 (788)
Q Consensus 473 ~li~~~ 478 (788)
.++..+
T Consensus 109 ivl~~L 114 (120)
T PF08579_consen 109 IVLGSL 114 (120)
T ss_pred HHHHHH
Confidence 555444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00063 Score=52.15 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQL----EPD---NPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+++.++..|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888888888888888888864 222 255788899999999999999999988764
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.056 Score=54.27 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh---------ccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACS---------HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR 652 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 652 (788)
.|+.++|+.++..+....-.+++.++..+.+.|- .....++|+..|.+.. .+.|+...=-+++.++..
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLML 271 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHH
Confidence 5666666666666444444555555555554332 1223677888887553 455543222245555555
Q ss_pred cCChHH----HHHHH---Hh-C------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 653 CGNLDE----ALRVI---LT-M------PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 653 ~g~~~~----A~~~~---~~-~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.|...+ ..++- .. . ....+-..+-+++.++.-.||.++|.+.+++++++.|..
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 554222 22222 11 1 122444556678899999999999999999999998773
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.008 Score=58.88 Aligned_cols=126 Identities=13% Similarity=0.022 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHH----hCCCC-CCHHHHHHHHHHhhccCchHHHHHHHHHHHH----cCC-CCChh
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEML----ETGIK-PSTTTITCALSACTDVASLRNGRAIHGYLIR----HDL-CLPTP 539 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 539 (788)
.|..|...|.-.|+++.|+..-+.-+ +-|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444555555566666655433321 11111 1123444455555556666666665555332 221 12334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS---------KELPVYNAMISGYAMHGLAVEALALFKNL 595 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 595 (788)
...+|++.|.-..++++|+.++.+-.. ....++-+|..+|...|..++|+...+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455666666666667777666643221 12234555666666667777766665543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0045 Score=55.75 Aligned_cols=113 Identities=13% Similarity=0.213 Sum_probs=66.8
Q ss_pred HHHHHhc--ccCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 387 KQVFNSI--ILRDVVLWNTLLAAYADL-----GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 387 ~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
...|+.. ...|..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 3445444 355677777777777654 5566666677777788888888888888877654 2211 11111111
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 035503 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVAS 518 (788)
Q Consensus 460 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 518 (788)
..-| -.+.+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 112 ---------------F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---------------FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------------hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1001 11234566777777777777777777777777666543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.046 Score=50.50 Aligned_cols=134 Identities=11% Similarity=0.013 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC----CCCCcchHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ----VKPSMEHFGCVV 647 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~~~~~l~ 647 (788)
-+.++.++.-.|.+.-...++++.++...+.++.....|.+.-.+.|+.+.|..+|++..+..+ +.-.........
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3567777777888888899999998876555777788888888899999999999997755432 222223333555
Q ss_pred HHHhhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 648 NLLSRCGNLDEALRVILTMPC--DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..|.-++++.+|...+.+++. +.++...|+-+-...-.|+...|++..+.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 566778888899889988853 3344555665555566788999999999999999983
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0063 Score=48.29 Aligned_cols=79 Identities=14% Similarity=0.302 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCChhhHHHHHHHHHhCCC--------chHHHHHHHHHHhCCCCCCHHHHH
Q 035503 437 NSVILGFLRNGQMNEAKDMFLQMQSLGV-QPNLITWTTLISGLTQNSC--------GNEAILFFQEMLETGIKPSTTTIT 507 (788)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~p~~~~~~ 507 (788)
...|..+...+++...-.+|+.+...|+ .|+..+|+.++.+.++..- .-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666777999999999999999999 8999999999988776532 335678999999999999999999
Q ss_pred HHHHHhhc
Q 035503 508 CALSACTD 515 (788)
Q Consensus 508 ~ll~~~~~ 515 (788)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887643
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0019 Score=48.64 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 647 VNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
...|.+.+++++|.++++.+ ...| ++..|...+..+...|++++|...++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35677788888888888877 3333 455777888889999999999999999999999876655443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=58.12 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSA-CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+..++.-+ .+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 45555666666666666666666666432 2334444444443 2334555557777777776644 6677777788888
Q ss_pred HHcCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 549 AKCGNIHQAKRVFDISPS--K----ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
.+.|+.+.|..+|++... + -...|...+..-.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 888888888888876654 1 2247888888888888888888888888774 44433333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.009 Score=60.66 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHc-CCCCCH-hHHHHHHHHhhcc---------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhh
Q 035503 585 AVEALALFKNLQQK-GIDPDS-ITFTNILNACSHA---------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSR 652 (788)
Q Consensus 585 ~~~A~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 652 (788)
.+.|+.+|.+.... ...|+. ..|..+..++... ....+|.++-+++. .+.|+ +.....++.++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 44567777776621 244543 3444444333221 12234444444443 33333 4444455555566
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHhCCCcHHHHHH
Q 035503 653 CGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL--SNAYAASGRWNEVSQV 728 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~ 728 (788)
.|+.+.|...|+++ ...|+ +..|...+..+.-.|+.++|.+.++++++++|.-..+-..- .++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 66666666666666 33444 34555555556666666666666666666666643333222 22344433 4555555
Q ss_pred HH
Q 035503 729 RD 730 (788)
Q Consensus 729 ~~ 730 (788)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.64 Score=49.39 Aligned_cols=124 Identities=13% Similarity=0.107 Sum_probs=66.4
Q ss_pred cCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC-----ChhHHHHHH
Q 035503 331 VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR-----DVVLWNTLL 405 (788)
Q Consensus 331 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~ 405 (788)
-|++++|+++|-.+..+|. .+.++.+.|++-...++++.-... -..+|+.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----------------------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig 803 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----------------------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIG 803 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----------------------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHH
Confidence 4778888888887777665 234455555666555555543211 123566666
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCch
Q 035503 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN 485 (788)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 485 (788)
..+.....+++|.+.+..-... ...+.++.+..++++-+.+-..+. -+....-.+.+.+.+.|.-+
T Consensus 804 ~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~ 869 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCD 869 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHH
Confidence 6666666666666666542211 123444445444444444333332 23344445555566666666
Q ss_pred HHHHHH
Q 035503 486 EAILFF 491 (788)
Q Consensus 486 ~A~~~~ 491 (788)
+|.+.+
T Consensus 870 qAV~a~ 875 (1189)
T KOG2041|consen 870 QAVEAY 875 (1189)
T ss_pred HHHHHH
Confidence 655544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.13 Score=53.79 Aligned_cols=180 Identities=13% Similarity=0.079 Sum_probs=93.8
Q ss_pred HHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHH
Q 035503 205 HGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRV 284 (788)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 284 (788)
++++.+.|-.|+... +...++-.|++.+|.++|. +.|.-..|+++|.+|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH-------
Confidence 345556665565543 4456777888888888875 466667777777766521
Q ss_pred HHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 035503 285 SVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQ 364 (788)
Q Consensus 285 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 364 (788)
-..+-+...|+.++-..+.+.-.... .+..--.+...++...|+.++|..+.-+
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d--------------------- 728 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGD--------------------- 728 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhc---------------------
Confidence 12223334444444333333222111 0111112334556666666666655322
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 035503 365 SDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFL 444 (788)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 444 (788)
.|=.+-+.++-.++...+..+...+..-+.+...+.-|.++|..|-.. ..++....
T Consensus 729 ---------------~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHv 784 (1081)
T KOG1538|consen 729 ---------------HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHV 784 (1081)
T ss_pred ---------------ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhhee
Confidence 222333334434443344445555555555666666677777665432 23555566
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 035503 445 RNGQMNEAKDMFLQMQSL 462 (788)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~ 462 (788)
..+++++|.++-+...+.
T Consensus 785 e~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred ecccchHhHhhhhhCccc
Confidence 667777777666665443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.23 Score=52.04 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=45.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNI 554 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (788)
..-+.+...+.-|-++|..|-.. ..+.+.....+++++|..+.+... ..-+.+|...++.++...++
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP----e~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP----EFKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc----cccccccchHHHHhhhhhhH
Confidence 33334444455555555554321 123344445555555555443322 22233444455555555555
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 555 HQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 555 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
++|.+ +|.+.|+..+|..+++++..
T Consensus 821 eEAqk------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 821 EEAQK------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHH------------------HHHHhcchHHHHHHHHHhhh
Confidence 55554 44456666777777766543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.5 Score=47.23 Aligned_cols=105 Identities=20% Similarity=0.106 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHh
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 651 (788)
.+.-+.-+...|+...|.++-++. . .|+..-|...+.+++..++|++-..+-+. +-++--|...+..+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 344455555566666666655443 1 35666666666666666666655443221 122345556666666
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
+.|+..+|..++.+++. ..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHH
Confidence 66666666666666421 2334445566666665544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0063 Score=49.29 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=68.5
Q ss_pred HHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhCC
Q 035503 647 VNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN----PGNYVALSNAYAASG 720 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 720 (788)
+.++...|++++|++.|.+. -.+..+..||+-..+++-+|+.++|..-+++++++.-+. ...|...+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34567788888888888776 233456678888888888888888888888888875432 235667788888888
Q ss_pred CcHHHHHHHHHHHHCCC
Q 035503 721 RWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 721 ~~~~A~~~~~~~~~~~~ 737 (788)
+.++|..-|+...+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888888877774
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=51.18 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
+...++..+...|+++.|+..+++++..+|-+...|..++.+|...|+..+|.+.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 556677778899999999999999999999999999999999999999999999998874
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.049 Score=52.72 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHcCChhHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHH-h---hhCC-CCCChhhHHHHHHHHHh
Q 035503 408 YADLGRSGEASRLFYQMQLE--GISPNIISWNSVILGFLRNGQMNEAKDMFLQ-M---QSLG-VQPNLITWTTLISGLTQ 480 (788)
Q Consensus 408 ~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-~---~~~g-~~~~~~~~~~li~~~~~ 480 (788)
+....+.++|+..+.+-+.. ....--.++..+..+.++.|.+++++..--. | .+.. ...-...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777766665543 1112233555566666666666655432211 1 1110 00001223333334444
Q ss_pred CCCchHHHHHHHHHHhC-CCCCC---HHHHHHHHHHhhccCchHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHHc
Q 035503 481 NSCGNEAILFFQEMLET-GIKPS---TTTITCALSACTDVASLRNGRAIHGYLIRH-----DLCLPTPIVTSLVDMYAKC 551 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 551 (788)
..++.+++.+-+.-... |..|. ......+..++...+.++++.+.|+.+.+. ++.....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444443333221 11110 122233444455555555555555555442 1222334555555555555
Q ss_pred CCHHHHHHH
Q 035503 552 GNIHQAKRV 560 (788)
Q Consensus 552 g~~~~A~~~ 560 (788)
.++++|.-+
T Consensus 176 ~D~~Kal~f 184 (518)
T KOG1941|consen 176 KDYEKALFF 184 (518)
T ss_pred HhhhHHhhh
Confidence 555555433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.5 Score=46.64 Aligned_cols=275 Identities=12% Similarity=0.043 Sum_probs=148.2
Q ss_pred cCChHHHHHHHHhcc---cCChhHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHH
Q 035503 380 CERIDNAKQVFNSII---LRDVVLWNTLLAA--YADLGRSGEASRLFYQMQLEGISPNIIS--WNSVILGFLRNGQMNEA 452 (788)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~A 452 (788)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... |.... ...|.-..-+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666554332 3455555555543 34569999999999999753 33322 22333334567888888
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCHHH--HHHHHHH--h-hccCchHHHHHHH
Q 035503 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTT--ITCALSA--C-TDVASLRNGRAIH 526 (788)
Q Consensus 453 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~ll~~--~-~~~~~~~~a~~~~ 526 (788)
..+-+..-..- +--...+...+...+..|+|+.|+++++.-.... +.++..- -..++.+ . .-..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877764431 1134667888999999999999999998776543 3344321 1112211 1 1123455566665
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCC
Q 035503 527 GYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPD 603 (788)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~ 603 (788)
.+..+..+..-+ .-..-..++.+.|+..++-.+++.+-+ |.+..+. +-.+.+.|+ .++.-+++.... .++||
T Consensus 253 ~~a~KL~pdlvP-aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~n 327 (531)
T COG3898 253 LEANKLAPDLVP-AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPN 327 (531)
T ss_pred HHHhhcCCccch-HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCcc
Confidence 666655542222 222334566667777777777666554 3322222 222233333 233333332211 13343
Q ss_pred -HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHh-hcCChHHHHHHHHhC
Q 035503 604 -SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS-RCGNLDEALRVILTM 666 (788)
Q Consensus 604 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 666 (788)
......+..+-...|++..|..--+... ...|....|..|.+.-. ..|+-.++..++.+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3444445555556666666555444443 44566666666555543 336666666666554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.012 Score=53.17 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=80.0
Q ss_pred CCchhHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH
Q 035503 430 SPNIISWNSVILGFLR-----NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT 504 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (788)
..|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 5677788888888764 57888888999999999999999999999998765 3322 1122222221
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 035503 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553 (788)
Q Consensus 505 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (788)
.-..+-+-|..++++|...|+.|+..++..+++.+++.+.
T Consensus 114 ---------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ---------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1123456789999999999999999999999999987765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.037 Score=51.67 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc-hHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGID-P-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME-HFGCVV 647 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~ 647 (788)
.+-..+..+...|++.+|++.|+++...-.. | -......++.++.+.|++++|+..+++.++.+.-.|... .+..++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3444556667777888888888777764211 1 123344556677777778888777777776654434321 111222
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----------------HH
Q 035503 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN-----------------YV 710 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~ 710 (788)
.++... .... + ......+...+|...++.+++..|+++.. -.
T Consensus 87 ~~~~~~--~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 87 LSYYKQ--IPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHH--HHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--Cccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 0000 0 11223344567777788888888876443 34
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 711 ALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 711 ~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.++..|.+.|.+..|...++.+++.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5788899999999999999998875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.5 Score=45.43 Aligned_cols=195 Identities=22% Similarity=0.211 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISP-----SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
..........+...+++..+...+.... ......+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3444555555556666666655555432 1222344455555556666666666666655533222 111112222
Q ss_pred -HhhccCcHHHHHHHHHhcHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh
Q 035503 613 -ACSHAGLVNEGLELFVGMFSDHQVKP----SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP--DAHIIGSLLSTCVK 684 (788)
Q Consensus 613 -~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~ 684 (788)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.+. ...+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 45666667777666666632 222 1222233334455666777777666665 2222 24556666666777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 685 SNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++++.|...+..++...|.....+..++..+...|+++++...+++.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777755566666666666666777777776665544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.98 Score=48.70 Aligned_cols=134 Identities=7% Similarity=-0.001 Sum_probs=69.5
Q ss_pred cCCCCCHHHHHH-----HHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---hHHHHHHHhcCCCC
Q 035503 277 EGVEPTRVSVTS-----ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLL---EDAEVVFSRMVERD 348 (788)
Q Consensus 277 ~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~ 348 (788)
-|++.+..-|.. +++-+...+.+..|.++-..+...-... ..++.....-+.+..+. +-+..+-+++..+
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 355555554443 3444555666666666665554332222 45566666666665322 2222233333221
Q ss_pred chhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccC--------ChhHHHHHHHHHHHcCChhHHHHH
Q 035503 349 IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR--------DVVLWNTLLAAYADLGRSGEASRL 420 (788)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~ 420 (788)
. .+...|..++.-...+|+.+-|..+++.=+.. +..-+...+.-+...|+.+-...+
T Consensus 504 ~---------------~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~V 568 (829)
T KOG2280|consen 504 L---------------TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQV 568 (829)
T ss_pred C---------------CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHH
Confidence 0 12225666666666778888888777643321 222344555556666666666666
Q ss_pred HHHHHHc
Q 035503 421 FYQMQLE 427 (788)
Q Consensus 421 ~~~m~~~ 427 (788)
+-.+..+
T Consensus 569 llhlk~~ 575 (829)
T KOG2280|consen 569 LLHLKNK 575 (829)
T ss_pred HHHHHHH
Confidence 6655543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.021 Score=48.18 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=68.2
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMP----CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG---NYVALSNAY 716 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~ 716 (788)
.-+....+.|++++|.+.|+.+. ..|- ..+-..++.+|.+.+++++|+..+++.+++.|.++. +++..|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34455567788888888887772 2222 246677889999999999999999999999999765 466667677
Q ss_pred HhCCC---------------cHHHHHHHHHHHHCC
Q 035503 717 AASGR---------------WNEVSQVRDIMKEKG 736 (788)
Q Consensus 717 ~~~g~---------------~~~A~~~~~~~~~~~ 736 (788)
+++.. ..+|...|+.++.+-
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 77665 668888888877654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0019 Score=49.42 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-------P-CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
++..++..|.+.|++++|++.++++ + ..|+ ..++..++..+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455566666666666666665554 1 1122 346777888888888888888888888764
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.047 Score=52.11 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=76.1
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcC---ChHHHHHHHHhC-CCCC-CHHH
Q 035503 601 DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCG---NLDEALRVILTM-PCDP-DAHI 674 (788)
Q Consensus 601 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~ 674 (788)
+-|...|..|...|...|+.+.|...|.+.. .+.|+ +..+..++.++..+. ...++..+++++ ..+| |...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4477888888888888888888888888776 44444 556667777665432 467778888887 3444 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..-|...+...|++.+|...++.+++..|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6667777899999999999999999988774
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=51.35 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=71.6
Q ss_pred HHHHhhcCChHHHHHHHHhC--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 647 VNLLSRCGNLDEALRVILTM--PCDP-----DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~--~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
++-+.+.|++++|..-|..+ .+++ ....|.+-+.+..+.+.++.|+....++++++|....++...+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34456677777777666555 1221 1234555566778899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHCCC
Q 035503 720 GRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 720 g~~~~A~~~~~~~~~~~~ 737 (788)
..+++|+.-|+++++..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 999999999999988764
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.03 Score=54.11 Aligned_cols=121 Identities=11% Similarity=0.034 Sum_probs=53.7
Q ss_pred HHHhhccCcHHHHHHHHHhcHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCH-----HH
Q 035503 611 LNACSHAGLVNEGLELFVGMFSDHQVKP----SMEHFGCVVNLLSRCGNLDEALRVILTM-------PCDPDA-----HI 674 (788)
Q Consensus 611 l~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-----~~ 674 (788)
..++.-.+.++++++.|+.+.+-..-.. ...++..|...|.+..+.++|.-+..++ ..+.-. ..
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 3344444555555555555432211111 1234445555555555555555444333 111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLE------PDNPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
...+.-+++..|..-.|.+..+++.++. |........++++|...|+.|.|..-|+.
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2223334555555555555555544431 11233344455566666665555554444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.7 Score=43.04 Aligned_cols=134 Identities=10% Similarity=0.034 Sum_probs=84.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc-----CCCCChhHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH-----DLCLPTPIVTSLV 545 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 545 (788)
.+.++.++.-.|.+.-.+..+++.++..-+.++.....+.+...+.|+.+.|...++...+. +......+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555556666666666666666544445555556666666666666666666654442 2223333444555
Q ss_pred HHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH
Q 035503 546 DMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 606 (788)
..|.-.+++.+|...|.+++. .++..-|.-.-+....|+..+|++.++.|+.. .|...+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 666777888888888887775 34455666666667778999999999998875 444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.97 Score=43.33 Aligned_cols=196 Identities=19% Similarity=0.156 Sum_probs=128.6
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh-hhHHHHHH-H
Q 035503 504 TTITCALSACTDVASLRNGRAIHGYLIRH-DLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KEL-PVYNAMIS-G 578 (788)
Q Consensus 504 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~ 578 (788)
.........+...+.+..+...+...... ........+......+...+++..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444555555555555555555542 2224445555666666667777777777765544 111 22233333 6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC----CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC--cchHHHHHHHHhh
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDP----DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS--MEHFGCVVNLLSR 652 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 652 (788)
+...|+++.|...+++... ..| ....+......+...++.+.+...+.+... ..++ ...+..+...+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHH
Confidence 8888999999999988755 233 233344444446678899999999988864 3333 5667788888889
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 653 CGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.++.++|...+... ...|+ ...+......+...++.+.+...+.+.++..|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999988887 33444 455666666666777899999999999999987
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=2.1 Score=46.30 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHH
Q 035503 472 TTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522 (788)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 522 (788)
+--+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 333444445555555555544443 34444444444444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.084 Score=45.77 Aligned_cols=93 Identities=11% Similarity=-0.001 Sum_probs=57.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC
Q 035503 576 ISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN 655 (788)
Q Consensus 576 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 655 (788)
.--+...|++++|..+|+-+...+ .-|..-+..|..++...+++++|+..|..+..- . .-|+..+-..+.+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCC
Confidence 334456777777777777766643 224455566666677777777777777766422 1 2334445556777777777
Q ss_pred hHHHHHHHHhCCCCCC
Q 035503 656 LDEALRVILTMPCDPD 671 (788)
Q Consensus 656 ~~~A~~~~~~~~~~p~ 671 (788)
.++|+..|..+...|.
T Consensus 121 ~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 7777777766643333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.46 Score=45.40 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=16.1
Q ss_pred hcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 700 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
..+|+|...-..|+..|...|+.++|.+.+=.+
T Consensus 230 aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 230 AADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555555555444333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.037 Score=52.12 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.+.-++......|+.++|...++++++..|+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 33344444444455555555555555555553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.1 Score=41.99 Aligned_cols=176 Identities=17% Similarity=0.116 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKEL------PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 613 (788)
.+..-+..-.+.|++++|.+.|+.+....+ .+.-.++-++.+.+++++|+...++....-..-....|...+.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 333444455577888888888877765322 23445666777888888888888887764322122233333333
Q ss_pred hhc---c----Cc---HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 035503 614 CSH---A----GL---VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA--HIIGSLLST 681 (788)
Q Consensus 614 ~~~---~----g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~l~~~ 681 (788)
++. . .+ ..+|..-|+.++.++ |+.+ =..+|..-+..+ .|. ..=..+++-
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~Iary 176 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKL---NDALAGHEMAIARY 176 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHH---HHHHHHHHHHHHHH
Confidence 321 1 11 123334444444332 2221 011111111111 011 112245677
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPG---NYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
|.+.|.+..|..-++.+++..|+.+. .+..+..+|...|-.++|.+.-+-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 89999999999999999998888544 566667789999999999887765543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0099 Score=36.49 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.059 Score=50.79 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=69.3
Q ss_pred HHHhhcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 035503 648 NLLSRCGNLDEALRVILTM----P---CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD---NPGNYVALSNAYA 717 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 717 (788)
--+.+.|++.+|...|... | ..|+ .+..|+.++...|+++.|...|..+.+-.|+ -|+.+.-|+.+..
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 3345667777777776665 2 1233 4555888899999999999999999998777 4677999999999
Q ss_pred hCCCcHHHHHHHHHHHHCCC
Q 035503 718 ASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~~ 737 (788)
+.|+.++|..+|+.+.++-+
T Consensus 227 ~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 227 RLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999987643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.28 Score=50.21 Aligned_cols=113 Identities=13% Similarity=0.014 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHH
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
....+|.++.++..+.+ +-|+.....+..+....++++.|...|+++. .+.|+ ...+...+..+.-.|+.++|.+
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 44567788888888865 4577777777777788888999999999886 67788 5677777788888999999999
Q ss_pred HHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 662 VILTM-PCDPDA---HIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 662 ~~~~~-~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
.++++ ...|-- ....-.+..|+ ....+.|+.+|-+--+
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhhccc
Confidence 99995 555543 23333333444 3456778887766433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.015 Score=35.64 Aligned_cols=33 Identities=24% Similarity=0.131 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888888874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=43.54 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHh
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDP---DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLS 651 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 651 (788)
-.....+.|++++|++.|+.+...- +. ....-..++.+|.+.|++++|+..+++.++-+.-.|+.. |.....++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHH
Confidence 3444455666666666666665531 11 123344455566666666666666666654333333221 111112211
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 652 RCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.-...+.. +..+ ...=+..+....|...|+++++..|++.-+
T Consensus 94 ~~~~~~~~---~~~~------------~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 94 YYEQDEGS---LQSF------------FRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHhhhH---Hhhh------------cccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 11111111 1111 000112233678889999999999996543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.2 Score=45.07 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcC---CCCchhHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCChhhHHHHH
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEG---ISPNIISWNSVILGFLR---NGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 475 (788)
..++-+|....+++..+++++.+.... +.-....--....++.+ .|+.++|+.++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344555777777777777777776541 11111222233444555 677777777777754444556666666665
Q ss_pred HHH
Q 035503 476 SGL 478 (788)
Q Consensus 476 ~~~ 478 (788)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.26 Score=52.61 Aligned_cols=161 Identities=17% Similarity=0.062 Sum_probs=101.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCH-----hHHHHHHHHhh----ccCcHHHHHHHHHhcHhhcCCCCCcc
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKG-IDPDS-----ITFTNILNACS----HAGLVNEGLELFVGMFSDHQVKPSME 641 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~p~~~ 641 (788)
...++....-.|+-+.+++++.+..+.+ +.-.. ..|...+..++ .....+.|.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 4445555555666666666666544321 11111 11222232222 2456677888888776543 6666
Q ss_pred hHH-HHHHHHhhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH-H
Q 035503 642 HFG-CVVNLLSRCGNLDEALRVILTMPC-D-----PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL-S 713 (788)
Q Consensus 642 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~ 713 (788)
.|. .-+..+...|++++|++.++++.. . -....+-.+++.+...+++++|...+.++.+.+..+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 555 556667778888888888886521 1 1233555677778888999999999999998877766666555 4
Q ss_pred HHHHhCCCc-------HHHHHHHHHHHHC
Q 035503 714 NAYAASGRW-------NEVSQVRDIMKEK 735 (788)
Q Consensus 714 ~~~~~~g~~-------~~A~~~~~~~~~~ 735 (788)
-++...|+. ++|..+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 467888888 8888888876443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.33 Score=39.89 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=81.5
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+.|- .....++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3467777777777776653 24455555554444444444445555544332222211 111234444444443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 660 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.......+.....+|+-++-.+++..+.+.+..+|..+..++.+|.+.|+..++.++++++-++|.+
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33345556777889999999999999988765567999999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.041 Score=56.01 Aligned_cols=62 Identities=16% Similarity=0.006 Sum_probs=43.1
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA----HIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
...+..++.+|.+.|++++|+..|+++ ...|+. .+|.+++.+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455567777777777777777777664 445553 24777777777777777777777777776
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.6 Score=42.75 Aligned_cols=125 Identities=12% Similarity=0.098 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETG-IKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
|...++...+..-.+.|..+|-+..+.+ +.++...+.+.+.- ...|+...|..+++.-...-+ .++...+.....+.
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~-~~~~d~~ta~~ifelGl~~f~-d~~~y~~kyl~fLi 477 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY-YATGDRATAYNIFELGLLKFP-DSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH-HhcCCcchHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 3334444444444455555555555544 23333333333332 223444455555544444333 22222233344444
Q ss_pred HcCCHHHHHHHHhhCCC---CC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPS---KE--LPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
..++-+.|..+|+...+ .+ ...|..+|+--..-|+...+..+=++|.+
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55555555555542221 11 23455555555555555555555555444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.8 Score=51.75 Aligned_cols=315 Identities=9% Similarity=-0.043 Sum_probs=173.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHH----HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 403 TLLAAYADLGRSGEASRLFYQM----QLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
++..+-.+.+.+.+|...+++- ... .....-|-.+...|...+++|....+...-. . +.. ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a----~~s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRF-A----DPS-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-c----Ccc-HHHHHHHH
Confidence 4444556677788888888773 221 1122334444557888888887777665311 1 112 22334456
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
...|++..|...|+.+.+.+ ++....++.++......+.++...-..+-......+.....++.-+.+-.+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 67788888999999888753 33355677777776677777776665555554444233334444455667788888777
Q ss_pred HHHhhCCCCChhhHHHH--HHHHHhCCCHHH--HHHHHHHHHHcCCCCC---------HhHHHHHHHHhhccCcHHHHHH
Q 035503 559 RVFDISPSKELPVYNAM--ISGYAMHGLAVE--ALALFKNLQQKGIDPD---------SITFTNILNACSHAGLVNEGLE 625 (788)
Q Consensus 559 ~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~--A~~~~~~m~~~~~~p~---------~~~~~~ll~~~~~~g~~~~A~~ 625 (788)
.... ..+...|.+. +..+.+..+-+. -.++.+.+++.-+.|- ...|..++....-. +.+.-.+
T Consensus 1539 ~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~ 1614 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIE 1614 (2382)
T ss_pred hhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHH
Confidence 7665 4445555543 333333222221 1123333333211110 01222222211110 0011111
Q ss_pred HHHhcHhhcCCCCCcchHH-H--HHHHHhhcCC---hHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHH
Q 035503 626 LFVGMFSDHQVKPSMEHFG-C--VVNLLSRCGN---LDEALRVILTM----PCDP-----DAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 626 ~~~~~~~~~~~~p~~~~~~-~--l~~~~~~~g~---~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~ 690 (788)
. ..+..++..+.. . ...-+.+.+. ..+-+-.+++. ...| -..+|...++.++..|+++.
T Consensus 1615 ~------l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1615 E------LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred H------hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1 113334322211 1 1111112222 22222222221 1122 24589999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
|....-++.+.. -+.++.-.+..++..|+...|..+++...+....
T Consensus 1689 A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1689 AQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999988887766 4778999999999999999999999999876653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.1 Score=42.86 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=75.8
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-hhHH---HHHHHHHhCCCH
Q 035503 510 LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKEL-PVYN---AMISGYAMHGLA 585 (788)
Q Consensus 510 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~l~~~~~~~g~~ 585 (788)
.......|+...+...++.+....+ .+..+...++.+|...|+.+.|..++..++.... ..|. .-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3345667888888888888888777 4467778899999999999999999998876322 1122 223333333333
Q ss_pred HHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhh
Q 035503 586 VEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSD 633 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 633 (788)
.+...+-.+.-. .| |...-..+...+...|+.++|.+.+-.+++.
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333333322 34 4444455556677777777777666655543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.1 Score=42.23 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------------hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 689 ELAEYISEHLLQLEPDNPG-----------------NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..|...++..++..|++.- .=...++.|.+.|.|..|..-++.|++.
T Consensus 133 ~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 133 RAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 4556666667777777522 2235678899999999999999999886
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.29 Score=47.09 Aligned_cols=144 Identities=13% Similarity=0.056 Sum_probs=79.7
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH----HHHhhccCcHHH
Q 035503 550 KCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNI----LNACSHAGLVNE 622 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~g~~~~ 622 (788)
..|+..+|-..++++.+ .|..+++.-=.+|...|+.+.-...+++..-. ..||...|..+ ..++...|.+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44666666656665554 45556666666777777777766666666543 23444322221 124556777777
Q ss_pred HHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHH
Q 035503 623 GLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMPCDPD-------AHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 623 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
|.+.-++.. .+.|. .-....+...+--.|+..++.++..+-...-+ ...|... -.+...+.++.|+++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHH
Confidence 777666554 33332 33444666667777777777777766532111 1122221 123344677777777
Q ss_pred HHHH
Q 035503 695 SEHL 698 (788)
Q Consensus 695 ~~~~ 698 (788)
|.+-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 7653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.76 Score=47.30 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKGID-PDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
.+..+..+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4555666666666666666666543211 12234455666666666666666666554
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.46 E-value=2 Score=44.42 Aligned_cols=150 Identities=9% Similarity=-0.066 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHhhccCcHHHHHHHHHhcHhh-cCCCCCcchH
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP---DSITFTNILNACSHAGLVNEGLELFVGMFSD-HQVKPSMEHF 643 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~~~~~ 643 (788)
...+|..++..+.+.|+++.|...+.++...+... .......-....-..|+..+|+..++..... ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34578888888999999999999888877643211 2233333344566778888888888877652 1111111111
Q ss_pred HHHHHHHhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 644 GCVVNLLSRCGNLDEALRV-ILTMPCDPDAHIIGSLLSTCVKS------NETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
..+...+.. ..+..... ........-..++..++..+... ++.+.+...|.++.+.+|+....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112333444444444 7889999999999999999888999988887
Q ss_pred HhC
Q 035503 717 AAS 719 (788)
Q Consensus 717 ~~~ 719 (788)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 664
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.92 Score=48.48 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH-HhhccCcHHHHHHHHHhcHhhcCCCCCc--chHHHHHHHHhhcCChHH
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILN-ACSHAGLVNEGLELFVGMFSDHQVKPSM--EHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 658 (788)
....+.|.++++.+... -|+...|...-. .+...|++++|++.|+++.....--+.. -.+..++..+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566777777777664 466555443332 4566777788877777654211111222 223366677777888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHH--HHhcCCH-------HHHHHHHHHHHh
Q 035503 659 ALRVILTMP-CDPDAHIIGSLLST--CVKSNET-------ELAEYISEHLLQ 700 (788)
Q Consensus 659 A~~~~~~~~-~~p~~~~~~~l~~~--~~~~g~~-------~~A~~~~~~~~~ 700 (788)
|.+.+..+. .......+...+.+ +...|+. ++|...+.++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888777773 22333333333333 3455666 666666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.1 Score=42.61 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=49.5
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCH----HHHHHHHHHHHhcC
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDA----HIIGSLLSTCVKSN 686 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~----~~~~~l~~~~~~~g 686 (788)
....|+.+.|++.|.+.+ .+-| ....|+.-+.++.-+|+.++|++-++++ ... |.. ..+..-+..|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 445566666666666554 3333 2455666666666666666666555554 111 111 12223334466677
Q ss_pred CHHHHHHHHHHHHhcCCCCCch
Q 035503 687 ETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
+.+.|+.-|+.+-++.......
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~ 151 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFARE 151 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHH
Confidence 7777777777776665554333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.86 Score=41.18 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++|+.|+..|...|+.++|..+|+..+...+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 45788889999999999999999987766543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.15 E-value=4.3 Score=41.25 Aligned_cols=93 Identities=15% Similarity=0.242 Sum_probs=68.4
Q ss_pred ccccccCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCC
Q 035503 32 KLRESDNSYESLYKSYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDF 111 (788)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 111 (788)
+||..-...|.++.||..|+.-+..+|..++..+.+++|...- +.-+.+|..-+++=....++.....+|.+-+...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-- 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-- 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--
Confidence 7777767778899999999999999999999999999997532 2233466666666556678888888888887765
Q ss_pred CCCchhHhhHHHHHHhcc
Q 035503 112 FARNEYVETKLVVFYAKC 129 (788)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~ 129 (788)
.. ..+|..-+..-.+-
T Consensus 107 l~--ldLW~lYl~YIRr~ 122 (660)
T COG5107 107 LN--LDLWMLYLEYIRRV 122 (660)
T ss_pred cc--HhHHHHHHHHHHhh
Confidence 33 55555555544433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.14 E-value=4 Score=40.91 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=12.2
Q ss_pred hHHHHHhHhcCChHHHHHHHhc
Q 035503 221 SSLIDMYGKCGDLEEARKVFDG 242 (788)
Q Consensus 221 ~~li~~~~~~g~~~~A~~~~~~ 242 (788)
..+...-..+|+.+-|..+++.
T Consensus 4 a~IA~~A~~~GR~~LA~~LL~~ 25 (319)
T PF04840_consen 4 AEIARKAYEEGRPKLATKLLEL 25 (319)
T ss_pred HHHHHHHHHcChHHHHHHHHHc
Confidence 3444455556666666666553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=4.8 Score=44.28 Aligned_cols=280 Identities=13% Similarity=0.074 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHH----HH-HHhcCCHHHHHHHHHHhhh-------CCCCCChhhHHHHHHHHHhC
Q 035503 414 SGEASRLFYQMQLEGISPNIISWNSVI----LG-FLRNGQMNEAKDMFLQMQS-------LGVQPNLITWTTLISGLTQN 481 (788)
Q Consensus 414 ~~~a~~~~~~m~~~~~~~~~~~~~~ll----~~-~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~ 481 (788)
...+.++++.....|. ......+. .+ +....+.+.|..+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567777777766642 22222222 22 3345677777777777755 33 333445555555554
Q ss_pred C-----CchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 035503 482 S-----CGNEAILFFQEMLETGIKPSTTTITCALSACTD-VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIH 555 (788)
Q Consensus 482 g-----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 555 (788)
. +.+.|+.++.+.-+.| .|+...+...+.-... ..+...|..+|..+.+.|. . ..+..+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~--~A~~~la~~y~~----- 372 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-I--LAIYRLALCYEL----- 372 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-h--HHHHHHHHHHHh-----
Confidence 3 3445666666666554 3343333222222222 1234556666666655554 1 111222222211
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 556 QAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 556 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
+.....+...|..++++..+.| .|-...-...+..+.. +.++.+.-.+..+.. .+
T Consensus 373 ----------------------G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g 427 (552)
T KOG1550|consen 373 ----------------------GLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LG 427 (552)
T ss_pred ----------------------CCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hh
Confidence 0112234555666666655555 2322222222223333 444444444433321 12
Q ss_pred CCCCcchHHHHHHH---Hhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 035503 636 VKPSMEHFGCVVNL---LSR----CGNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 636 ~~p~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 704 (788)
..--...-..+... ... ..+.+.+...+.+....-+......+...|.. ..+++.|...|.++-...
T Consensus 428 ~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-- 505 (552)
T KOG1550|consen 428 YEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-- 505 (552)
T ss_pred hhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--
Confidence 11110000001100 000 22455566666666555555566666655432 347888888888887766
Q ss_pred CCchHHHHHHHHHhC---CCcHHHHHHHHHHHHCC
Q 035503 705 NPGNYVALSNAYAAS---GRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 705 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 736 (788)
+...++++.++... .++..|.++++...+.+
T Consensus 506 -~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 506 -AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred -hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 77888888888762 12678888888776644
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=7.5 Score=43.41 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=29.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 035503 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498 (788)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (788)
+..+.+.+++......+.. .+.+...-.....+....|+.++|......+-..|
T Consensus 106 l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 3344556666655552211 12344444555666777777776766666665443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.18 Score=44.20 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh----hcCCCCCcchH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS----DHQVKPSMEHF 643 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 643 (788)
...++..+...|++++|+.+++++.... +-|...+..++.+|...|+..+|.+.|+++.+ +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556667777888888888888887753 34677788888888888888888888876532 45777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.97 E-value=6 Score=42.00 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKE---LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA- 613 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 613 (788)
...|...+..-...|+.+.+.-.|++..-+- ...|-..+.-....|+.+-|-.++....+-- .|+......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHH
Confidence 4466677777788899999988888776432 2356666655556688888887777755543 2333222222222
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHH---HHHHhC-C--CCCCHH--HHHHHHHH-HH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEAL---RVILTM-P--CDPDAH--IIGSLLST-CV 683 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~--~~p~~~--~~~~l~~~-~~ 683 (788)
+...|+++.|..+++.+..++ |+ ...-..-+....+.|..+.+. +++... + ..+... .+....+. +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 556789999999999997653 65 333345567778889988888 444444 2 222221 22222332 55
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
..++.+.|..++.++.+..|++...|..+.+....++
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999988776655
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.94 E-value=4.3 Score=40.12 Aligned_cols=18 Identities=22% Similarity=-0.008 Sum_probs=12.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 035503 682 CVKSNETELAEYISEHLL 699 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~ 699 (788)
+.+.++++.|...|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456777777777777554
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.93 E-value=7.5 Score=42.95 Aligned_cols=53 Identities=2% Similarity=0.058 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
.-++..+.+..+.+.++.+.+...+.++..|..++..+.+.+..+.-.+...+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 34667788888999999999988888899999999999988866655444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.22 Score=46.72 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=63.6
Q ss_pred HHHHHhcc--cCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 387 KQVFNSII--LRDVVLWNTLLAAYADL-----GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 387 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
...|.... ++|-.+|-..+..+... +.++-.-..++.|.+.|+..|..+|+.|++.+-+..-... .+|
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvf--- 128 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVF--- 128 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHH---
Confidence 34455554 45667777777666543 4555566677788888999999999988887654332110 011
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 035503 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517 (788)
Q Consensus 460 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 517 (788)
....-.|-+ +-+-++.++++|...|+.||..+-..++.++.+.+
T Consensus 129 ------------Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 129 ------------QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred ------------HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 111111111 12335566666666666666666666666665544
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.37 Score=39.86 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 669 DPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQ-LEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+...+-.++.+++..+. +..+++.+++.+++ -.|. .....+.|+-.+++.|+|++++++.+..++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344445556666665553 55677888888886 4454 45566677888888888888888888877643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.4 Score=39.38 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHH--HHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-----HHHHHHhhcCChHHH
Q 035503 587 EALALFKNLQQKGIDPDSITFTN--ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-----CVVNLLSRCGNLDEA 659 (788)
Q Consensus 587 ~A~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A 659 (788)
+.....+++...+......++.. +...+...|++++|...++..+.. |..+.+. .|+......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555555555431222222222 233467788888888888766522 2222222 667778888889999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 660 LRVILTMPCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 660 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+..++....+. .......-+.++...|+-++|+..|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 88888764221 2223344456788888888888888888887755
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.7 Score=48.58 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=21.0
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035503 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEH 697 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 697 (788)
.+.|+++.|.+..++.. +...|..|+.....+|+++.|+.+|++
T Consensus 329 l~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34555555544444332 344555555555555555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.08 Score=32.91 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
+|..|+.+|.+.|+|++|+.++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888888888888888854
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.08 Score=32.34 Aligned_cols=31 Identities=26% Similarity=0.140 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+|..++..|...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777764
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.22 E-value=14 Score=42.84 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 644 GCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
..|+.-+..+++.-+|-++..+...+|. .....+++...+++|.+.....-
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 3555666666666666666666543332 12233455556666666555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.095 Score=34.43 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 706 PGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 706 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
|.++..++.+|.+.|++++|.++++++++..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457899999999999999999999999987653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.083 Score=32.83 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
+|..|+.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999996644
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.56 Score=39.38 Aligned_cols=48 Identities=8% Similarity=0.004 Sum_probs=26.1
Q ss_pred CCcchHHHHHHHHHHCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHh
Q 035503 246 RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE-GVEPTRVSVTSILSAS 293 (788)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~ 293 (788)
|+.....+++.+|+.+|++..|+++++...+. +++.+..+|..|+.-+
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455555566666666666666665555443 4555555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.9 Score=37.38 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhC
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN 481 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 481 (788)
.++..+...+.......+++.+...+. .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344455555556666666666554442 3555566666666554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.5 Score=45.16 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMP-CDP---DAHIIGSLLSTCVKSNETELAEYISEHL 698 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (788)
.++.++.+.|+.+||.+.+.++- ..| ...+..+|+..+...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 45555555566666655555552 111 1224455555555555555555555553
|
The molecular function of this protein is uncertain. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.67 Score=38.92 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=23.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCCChhhHHHHHH
Q 035503 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQM-QSLGVQPNLITWTTLIS 476 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~g~~~~~~~~~~li~ 476 (788)
.|+..+..+++.+|+..|++..|.++.+.. ...+++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345555555555555555555555555554 33344444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.82 E-value=13 Score=40.98 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHH
Q 035503 325 INFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTL 404 (788)
Q Consensus 325 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 404 (788)
++.+.+.+.+++|+.+-+.....-... .-..+...+++.+.-.|++++|-...-.|...+..-|...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~-------------~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~ 429 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERF-------------VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELW 429 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcccc-------------chHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHH
Confidence 567788889999998887764432210 0122556667777777888888887777777677777666
Q ss_pred HHHHHHcCChhH
Q 035503 405 LAAYADLGRSGE 416 (788)
Q Consensus 405 ~~~~~~~g~~~~ 416 (788)
+..+...++...
T Consensus 430 V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 430 VFKFAELDQLTD 441 (846)
T ss_pred HHHhccccccch
Confidence 666666665544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.13 Score=49.56 Aligned_cols=109 Identities=15% Similarity=0.029 Sum_probs=77.2
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTMP-C-DPDAHIIGSLLSTCVKSN 686 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g 686 (788)
-.+-|.+.|.+++|+..|.+.+ .+.| ++..+..-+.+|.+..++..|..-.+.+- . +--...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4667999999999999999876 5667 67777788899999999988876665542 1 111234444445555668
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHH
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 725 (788)
+..+|.+-++.+++++|++.. |-..|.+.....|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 999999999999999999543 33444444443333
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.71 E-value=7 Score=43.58 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=34.2
Q ss_pred HHHHHHhccCChHHHHHHhccCC---CCCcccHHHHHHHHHcCCC-------chHHHHHHHHHHHCCCCCCcc
Q 035503 121 KLVVFYAKCDALDVASRLFCRLR---VKNVFSWAAIIGLNCRVGL-------SEKALIGFVEMQEDGVSPDNF 183 (788)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~ 183 (788)
.++-.|.|+|++++|.++..... ......+...+..|....+ -+.....|.+..+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 45666789999999999983322 2334456666777655422 224445566555443323444
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.58 Score=45.18 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=120.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH----HHHHHHhhcC
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG----CVVNLLSRCG 654 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 654 (788)
..-.|+..+|...++++++. .+.|...+...=++|...|+.+.-...+++++- .-.|+.+.|. .++-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578889999999998875 466777777777889999999998888888864 3356766554 4455567899
Q ss_pred ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhCCCcHHHHHH
Q 035503 655 NLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD----NPGNYVALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 655 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~ 728 (788)
-+++|.+..++. . .+.|.-...++...+...|++.++.++.++--..-.+ -..-|...+-.|.+.+.++.|+.+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999888 3 3455566677777888899999999987765432222 234577888889999999999999
Q ss_pred HHHHHHCCCccCCc
Q 035503 729 RDIMKEKGLRKNPG 742 (788)
Q Consensus 729 ~~~~~~~~~~~~~~ 742 (788)
|++=+-+...+..+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 99865555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.62 E-value=6.1 Score=36.76 Aligned_cols=56 Identities=7% Similarity=0.052 Sum_probs=28.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCC--CCCcchHHHHHHHHhhcCChHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQV--KPSMEHFGCVVNLLSRCGNLDEALRVI 663 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (788)
|...|-.+....++..|...++...+..++ +.+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 444455566666777777777654222111 11233444555544 456666665554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.57 E-value=12 Score=39.91 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=79.0
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHH
Q 035503 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNF-VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLI 224 (788)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 224 (788)
+...|..+|.---...+.+.+..++..+... .|-.. .|......=.+.|..+.+.++|+..+. +++..+..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4445666666555555555566666666543 34333 222233333466777777777777665 3466666776666
Q ss_pred HHhHh-cCChHHHHHHHhcCCC------CCcchHHHHHHHHHHCCChhHHHHHHHHHHHc
Q 035503 225 DMYGK-CGDLEEARKVFDGMIA------RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLE 277 (788)
Q Consensus 225 ~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 277 (788)
..+.. .|+.+.-...|+.... .....|...|.--...+++.....+++..++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 55443 4677777777776532 14456777777777778888888888888764
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.6 Score=45.19 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEE
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELH 753 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (788)
..+++-.+|.+.++++.|.++.+.++.+.|+++.-+...|.+|.+.|.+..|..-++..++.-+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~--------------- 247 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE--------------- 247 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---------------
Confidence 45667778999999999999999999999999999999999999999999999999998876532
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHH
Q 035503 754 VFVACDRSHPKTEEIYATLALLGMHV 779 (788)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 779 (788)
-|.+..|..++.++..+.
T Consensus 248 --------dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 248 --------DPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred --------chhHHHHHHHHHHHhhcC
Confidence 466777777777766543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.26 Score=47.53 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=64.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhh
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSR 652 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 652 (788)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-...++. +.- -...|..-+.+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 46789999999999999999766 456 889999999999999999888777766642 111 12334444444444
Q ss_pred cCChHHHHHHHHhC-CCCCCH
Q 035503 653 CGNLDEALRVILTM-PCDPDA 672 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~~p~~ 672 (788)
.|+..||.+-++.. ..+|+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HhhHHHHHHhHHHHHhhCccc
Confidence 56666666655554 456664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.9 Score=45.48 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (788)
....+.++.-+.+.|.++.|+++.++ +. .-.....+.|+++.|.++.+.. .+...|..|++.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 33456666666667777777665322 11 1122334455555555443221 345566677777
Q ss_pred HHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
..++|+++-|.+.|.+... |..|.-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+++
T Consensus 357 AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777777766554 56666666666776665565555544431 222333344456665555555
Q ss_pred H
Q 035503 628 V 628 (788)
Q Consensus 628 ~ 628 (788)
.
T Consensus 426 ~ 426 (443)
T PF04053_consen 426 I 426 (443)
T ss_dssp H
T ss_pred H
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.38 E-value=6.4 Score=36.40 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=57.3
Q ss_pred CcHHHHHHHHHhcHhhcCCCCCcc----hHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHH-----HHHHHHhc
Q 035503 618 GLVNEGLELFVGMFSDHQVKPSME----HFGCVVNLLSRCGNLDEALRVILTMP---CDPDAHIIGS-----LLSTCVKS 685 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~-----l~~~~~~~ 685 (788)
.+++.|+.+|+..-.-+....... .+..++..-...+++.+|+++|++.. ...+..-|.. -...|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566666777766644333322222 22234444567889999999998872 2222222222 12234333
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCc--hHHHHHHHH
Q 035503 686 -NETELAEYISEHLLQLEPDNPG--NYVALSNAY 716 (788)
Q Consensus 686 -g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~ 716 (788)
.|.-.+...+++..+++|.... -+..|-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 7888889999999999998444 344444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.13 E-value=5.2 Score=34.53 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 035503 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANL 296 (788)
Q Consensus 250 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 296 (788)
....++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 33445555555566666666666665554 24444555555555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.14 Score=31.22 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=26.6
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..+..++.+|...|++++|+..+++.++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999887543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=5.8 Score=34.74 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=74.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH--HHHHHHhhcCC
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG--CVVNLLSRCGN 655 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~ 655 (788)
+.+.+..++|+.-|..+...|...-+. ...-......+.|+...|...|+++-.+..++.-..-.. .-..++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677788888888877765432111 111122235677888888888888764432221111111 23345667888
Q ss_pred hHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 656 LDEALRVILTMPCDPD---AHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 656 ~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
+++....++.+..+.+ +..-..|+-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8887777777643322 23456677777788888888888888776
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.94 E-value=18 Score=40.20 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCCh-hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 035503 352 WNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDV-VLWNTLLAAYADLGRSGEASRLFYQMQLEGIS 430 (788)
Q Consensus 352 ~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 430 (788)
....+..+.+.|..+......|+.+|.+.++.++-.++.+....... .-....+..+.+.+-.++|.-+-.....
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~---- 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK---- 491 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc----
Confidence 34455556666666667788899999999999998888877652211 1256677777777777777665544322
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 035503 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460 (788)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (788)
+..... -.+-..+++++|++.+..+.
T Consensus 492 -he~vl~---ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 492 -HEWVLD---ILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred -CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence 222222 23445788999999998773
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.21 Score=43.85 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
++|+.-+++++.++|+...++++++++|...+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 44555555555556665555555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=14 Score=38.48 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=36.9
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHc
Q 035503 146 NVFSWAAIIGLNCRVGLSEKALIGFVEMQEDG-VSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVG 212 (788)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 212 (788)
|+..|...+.-+-+.+.+.+.-.+|..|.... ..||...+.+.- -+...-+++.|+.++...++.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcC
Confidence 66667777776666666777777777776643 223332222221 1222233666677666666654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.72 E-value=8.9 Score=36.12 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHh-----hccCcHHHHHHHHHhcHhhcCC--CCCcc-
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKG-IDPDSITFTNILNAC-----SHAGLVNEGLELFVGMFSDHQV--KPSME- 641 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~~~--~p~~~- 641 (788)
.|..-|..|..+++-..-..+|++.+.-. --|.+.. ..+++-| .+.|.+++|..-|=++.+.+.- .|...
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt 271 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 271 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence 45555666666666666666666654321 1233322 2334433 3456666664433333333322 22221
Q ss_pred --hHHHHHHHHhhcCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035503 642 --HFGCVVNLLSRCGN----LDEALRVILTMPCDPDAHIIGSLLSTCV 683 (788)
Q Consensus 642 --~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 683 (788)
-|..|++++.+.|- -.||.. ...+|...+...++.+|.
T Consensus 272 CLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ 315 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQ 315 (440)
T ss_pred HHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHh
Confidence 23456666666551 122210 012345556666666663
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.16 Score=30.91 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.+|..+|.+|...|++++|+..++++++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5789999999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.15 Score=31.11 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=23.8
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 526 HGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
++++++..| .+..+|+.++..|...|++++|+
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 456666676 67778888888888888887775
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.4 Score=41.59 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=62.4
Q ss_pred CccccHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCch----------------hHHH
Q 035503 42 SLYKSYFHQISSLSK-----EKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMY----------------TGQQ 100 (788)
Q Consensus 42 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~----------------~a~~ 100 (788)
.+-.||-+.+..+.+ ++.++---..++.|.+.|+.-|-.+|..||..+-+..... =++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 444467666666643 4566666778899999999999999999999986543221 1666
Q ss_pred HHHHHHHhCCCCCCchhHhhHHHHHHhccCC
Q 035503 101 IHARILKNGDFFARNEYVETKLVVFYAKCDA 131 (788)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (788)
++++|..+| .-+|-++...|++++++.+-
T Consensus 145 vLeqME~hG--VmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHG--VMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcC--CCCchHHHHHHHHHhccccc
Confidence 677777777 67777777777777666654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.46 E-value=26 Score=40.78 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH--HHHHHHHhhcc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT--FTNILNACSHA 617 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 617 (788)
+|...++-+...+++++|.-.|+..-+ ...-+.+|...|++.+|+.+..++.. .-+... -..|..-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 344444555556666666666665433 23345566667777777777666532 112211 24455667778
Q ss_pred CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 035503 618 GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 667 (788)
+++-+|-++..+...+ | ...+..|++...+++|+.+.....
T Consensus 1013 ~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 8888887777665421 2 234566778888888887776664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.37 E-value=3.7 Score=35.78 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=51.7
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELA 691 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A 691 (788)
-...++.+++..++..+. -+.|...... .-+..+.+.|++.+|+.+++++. ..|....-..|+..|....+-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 445667777777777764 5566644333 55566777888888888888873 334445555666655544332223
Q ss_pred HHHHHHHHhcCCC
Q 035503 692 EYISEHLLQLEPD 704 (788)
Q Consensus 692 ~~~~~~~~~~~p~ 704 (788)
....+.+++..|+
T Consensus 97 r~~A~evle~~~d 109 (160)
T PF09613_consen 97 RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHhcCCC
Confidence 3344445554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=8.6 Score=35.10 Aligned_cols=182 Identities=10% Similarity=-0.029 Sum_probs=109.0
Q ss_pred hhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh-hHHHH--HHHHHhCCCHHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP-VYNAM--ISGYAMHGLAVEAL 589 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~A~ 589 (788)
|-..|-+..|.-=+.+.+...| .-+.++|-|+-.+...|+++.|.+.|+...+-|+. -|..+ .-++...|++.-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 4455666667777777777777 66788999999999999999999999988876553 22222 22344578999888
Q ss_pred HHHHHHHHcCC-CCCHhHHHHHHHHhhccCcHHHHHHHH-HhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhC
Q 035503 590 ALFKNLQQKGI-DPDSITFTNILNACSHAGLVNEGLELF-VGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 590 ~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~-~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
+-+.+.-+... .|-...|..+. ...-++.+|..-+ ++.. + .+.+-|. .++..|.-.=..+.+.+-+..-
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~ 225 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKAD 225 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhh
Confidence 87777655431 12122222222 3444666665433 3332 2 3334444 3444443332333333333332
Q ss_pred CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 035503 667 PCDP------DAHIIGSLLSTCVKSNETELAEYISEHLLQLEP 703 (788)
Q Consensus 667 ~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 703 (788)
..+. -..++.-++.-+...|+.++|..+|+-++..+-
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2111 123566677778889999999999998887543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.27 E-value=4.1 Score=35.46 Aligned_cols=50 Identities=10% Similarity=-0.107 Sum_probs=24.3
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
.++.+.+..++.-+.-..| ....+-..-+..+...|+|.+|+.+|+.+..
T Consensus 23 ~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRP-EFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3444444444444444444 2233333334445555666666666655544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.17 E-value=7.5 Score=34.97 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=50.7
Q ss_pred HhhccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCCHHH
Q 035503 512 ACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPV--YNAMISGYAMHGLAVE 587 (788)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 587 (788)
.+...+++++|...++..+...-. ....+-..|+......|++|+|+..++....++-.. ...-.+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 455566666666666655543211 112223345666667777777777777666554332 2234556677777777
Q ss_pred HHHHHHHHHHcC
Q 035503 588 ALALFKNLQQKG 599 (788)
Q Consensus 588 A~~~~~~m~~~~ 599 (788)
|..-|++.++.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 777777766654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.04 E-value=3.2 Score=38.28 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=52.9
Q ss_pred HHHHHHHhhc-CChHHHHHHHHhCC-----CCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCCCCchHH----
Q 035503 644 GCVVNLLSRC-GNLDEALRVILTMP-----CDPDAHIIGSLL---STCVKSNETELAEYISEHLLQLEPDNPGNYV---- 710 (788)
Q Consensus 644 ~~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---- 710 (788)
..++..|-.. .+++.|+..|+.+. .+.+...-..++ ..-...+++.+|+.+|+++..-.-+++-.-+
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 3555666443 67777777777761 122222222233 3345678999999999999876665543322
Q ss_pred ---HHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 711 ---ALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 711 ---~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.-+..+.-..+.-.+...+++-.+..
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 22333344456556666666555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.02 E-value=5.9 Score=40.87 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD----NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
....+|..++..+++.|+++.|...+.++...++. .+.+...-+.++...|+..+|...++......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999986532 46778888999999999999999999888743
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.78 E-value=6.8 Score=32.61 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=24.6
Q ss_pred HHHHHHcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 035503 545 VDMYAKCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKG 599 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 599 (788)
++.+..+|+-+.-.+++..+. +.++...-.+..+|.+.|+..++-+++.+.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444444444444444432 2333444445555555555555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.76 E-value=45 Score=42.12 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=70.3
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--C--------CCCHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--C--------DPDAHI 674 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--------~p~~~~ 674 (788)
.+|....+....+|+++.|....-.+.+. + -+..+...+..+...|+...|+.++++.- . .+.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 45666677777799999988777666332 2 34566677888899999999999887761 1 111222
Q ss_pred HHHHHH--------HH-HhcCCH--HHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 675 IGSLLS--------TC-VKSNET--ELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 675 ~~~l~~--------~~-~~~g~~--~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
-+..+. -| ...|+. +.-++.|..+.+..|.....|+.++..|.
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 222111 12 223443 45678899999999987777777775443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.36 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.++.++...|++++|+..++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444444555555555555555555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.10 E-value=17 Score=35.92 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=86.2
Q ss_pred hhcCChHHHHHHHHhccc----CChh-------HHHHHHHHHHHcC-ChhHHHHHHHHHHHc--------CCCCch----
Q 035503 378 AKCERIDNAKQVFNSIIL----RDVV-------LWNTLLAAYADLG-RSGEASRLFYQMQLE--------GISPNI---- 433 (788)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~----~~~~-------~~~~l~~~~~~~g-~~~~a~~~~~~m~~~--------~~~~~~---- 433 (788)
.+.|+.+.|..++.+... .++. .+-.+.......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 356788888888877642 1221 2233334444556 888888888776543 122332
Q ss_pred -hHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHH
Q 035503 434 -ISWNSVILGFLRNGQMNE---AKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509 (788)
Q Consensus 434 -~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (788)
.++..++.+|...+..+. |..+++.+... .+-.+..+-.-+..+.+.++.+++.+.+.+|+.. +.-....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 356677777888776554 55555555333 1212444545566667788888999999998875 22133344444
Q ss_pred HHHhhc--cCchHHHHHHHHHHHHcCC
Q 035503 510 LSACTD--VASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 510 l~~~~~--~~~~~~a~~~~~~~~~~~~ 534 (788)
+..+.. ......+...+..++....
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~ 188 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRF 188 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHh
Confidence 443311 1223445555555444333
|
It is also involved in sporulation []. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.7 Score=40.18 Aligned_cols=62 Identities=18% Similarity=0.043 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.+....+...|++-++++....++..+|++..+|+..+.++...=+.++|..-|.++++..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33444455677999999999999999999999999999999999999999999999988765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.1 Score=43.25 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
++..++..+...|+++.++..+++.+..+|-+...|..+..+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5556677777888888888888888888888888888888888888888888888888765
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.58 E-value=2.1 Score=38.24 Aligned_cols=101 Identities=11% Similarity=0.050 Sum_probs=61.9
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSN 686 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g 686 (788)
+...|++++|..-|.+++.. .++. ...|..-+.++.+.+.++.|++-..++ ...|.. ..+..-+.+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45666777777666666532 1221 123445556667777777777666555 344432 23333345677778
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
.++.|+.-|+++++.+|....+-...+.+-
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 889999999999999998655555554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.6 Score=37.22 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=30.1
Q ss_pred cCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 653 CGNLDEALRVILTMP-CDPDAHIIGS-LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 653 ~g~~~~A~~~~~~~~-~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
.++++++..+++.+. ..|+...... -+..+...|++++|+.+++.+.+-.|..+..--.++.++...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 455555555555541 2222221111 12234445555555555555554444444444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.3 Score=29.36 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++..++.+|.+.|++++|.+.|+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57789999999999999999999998764
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.098 Score=45.68 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=51.2
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCc
Q 035503 84 ELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLS 163 (788)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (788)
.+++.+.+.+.+......++.+...+ ...++...+.++..|++.++.+...+.++.... .....++..|.+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKEN--KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTS--TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 34555556666666667777776655 456677777777777777666666666663332 3334456666666666
Q ss_pred hHHHHHHHHH
Q 035503 164 EKALIGFVEM 173 (788)
Q Consensus 164 ~~A~~~~~~m 173 (788)
++|.-+|.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 6666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.42 Score=26.98 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHH
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.18 Score=44.07 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhc
Q 035503 289 ILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344 (788)
Q Consensus 289 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 344 (788)
++..+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++..
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~ 68 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS 68 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc
Confidence 34455555666666666666666555555666677777777776666666666643
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.7 Score=40.62 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHH-------HHHHHHHHHhcC--CC----CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 HIIGSLLSTCVKSNETEL-------AEYISEHLLQLE--PD----NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..+..+++.|...|+.+. |...|+++++.+ |. .....+.+|.++.+.|++++|.+.|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 356667777777777544 555555555433 22 24567789999999999999999999998765
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.29 Score=47.54 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=71.1
Q ss_pred hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHH
Q 035503 652 RCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVR 729 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 729 (788)
..|.+++|++.+... +..|.. ..+..-..++.+.++...|++-+..+++++|+....|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456677777776665 344433 344445566778888889999999999999999999999999999999999999999
Q ss_pred HHHHHCCCccCCc
Q 035503 730 DIMKEKGLRKNPG 742 (788)
Q Consensus 730 ~~~~~~~~~~~~~ 742 (788)
....+.+.....+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 9999988765544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.66 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.7
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+|..++.+|...|++++|...|++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478899999999999999999999987643
|
... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.62 E-value=14 Score=32.54 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=57.0
Q ss_pred HhCCCchHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChh---HHHHHHHHHHHcCCH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP---IVTSLVDMYAKCGNI 554 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 554 (788)
.+.+..++|+.-|.++.+.|...-+. ............|+...|...|+++-+..+.|... .-..-..++...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455556666666665544322111 11112222344555555555555555544333222 111122334456666
Q ss_pred HHHHHHHhhCCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 035503 555 HQAKRVFDISPSKEL----PVYNAMISGYAMHGLAVEALALFKNLQQK 598 (788)
Q Consensus 555 ~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 598 (788)
+....-.+.+..+.. ..-..|.-+-.+.|++..|.++|.++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666555543211 12234555556667777777777766553
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.55 E-value=2.2 Score=29.22 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++.++-.+.+.|++++|.++.+.+++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 46788999999999999999999998754
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.54 E-value=14 Score=32.66 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035503 453 KDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510 (788)
Q Consensus 453 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (788)
.++++.+.+.+++|+...|..+++.+.+.|++.. +.+++..++-+|.......+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHH
Confidence 3455666677788888888888888888887544 44455555666665544433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.47 E-value=40 Score=37.71 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=20.7
Q ss_pred HHHHhHhcCChHHHHHHHhcC---CCCCcchHHHHHHHHHHC
Q 035503 223 LIDMYGKCGDLEEARKVFDGM---IARNVVAWNSMIVGYVQN 261 (788)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~ 261 (788)
+|-.+.|+|++++|.++..+. ..+....+-..+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 445566777777777777322 223334455555655554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.26 E-value=2.6 Score=37.27 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=47.1
Q ss_pred HHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 621 NEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
++|+.-|++++ .+.|+ ..++.+++.+|...+.+ .||.. .....+++|...|+++.
T Consensus 52 edAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l------------~~d~~---------~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 52 EDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFL------------TPDTA---------EAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---------------HH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhh------------cCChH---------HHHHHHHHHHHHHHHHH
Confidence 34444444444 45677 46677777777554421 11110 01123578888999999
Q ss_pred hcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 700 QLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 700 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.+|++......|-.. ++|-.+..++.+.+..
T Consensus 108 ~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 108 DEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS-
T ss_pred hcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhh
Confidence 9999965555444332 3566677777666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.17 E-value=15 Score=32.49 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=25.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
.+++.+...|++-+|+++.+.... .+......++.+..+.++...-..+|+-.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455556666666666554321 11122234555555555555444444444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.88 Score=29.15 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
+++.++..|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444444444444444444444443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.62 E-value=34 Score=35.78 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=63.0
Q ss_pred CCchhHH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHH--hCCCchHHHHHHHHHHhCCCCCCHHHH
Q 035503 430 SPNIISW-NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT--QNSCGNEAILFFQEMLETGIKPSTTTI 506 (788)
Q Consensus 430 ~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~ 506 (788)
.|+..|+ +.++.-+.+.|-..+|...+..+... .+|+...|..+|..-. ..-+...+..+|+.|... +-.|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 4555444 45666677777777777777777554 3556677776665322 222366667777777653 22666666
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHH
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIR 531 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~ 531 (788)
...+.--...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 6666666677777777777766655
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=27 Score=34.48 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=20.3
Q ss_pred ChhhHHHHHHHHHhCCCc----hHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 035503 467 NLITWTTLISGLTQNSCG----NEAILFFQEMLETGIKPSTTTITCALSACT 514 (788)
Q Consensus 467 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (788)
|...-...+.++.+.|+. .++...+..+... .|+...-...+.++.
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG 116 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATG 116 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHh
Confidence 344444445555555542 3455555555321 344444333444333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=88.47 E-value=0.87 Score=26.63 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
|..++..+...|+++.|+..++++++.+|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666666555553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.2 Score=40.94 Aligned_cols=85 Identities=8% Similarity=0.025 Sum_probs=47.6
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM-PCDPDAHI-IGSLLSTCVKSNETE 689 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~ 689 (788)
.|.....++.|+..|.+.+ -+.|+..+|. .-+..+.+..+++.+..--.++ ...|+..- ..-++........++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3556666777777776665 5566665543 5555555666666555443333 34444432 333444455556666
Q ss_pred HHHHHHHHHHh
Q 035503 690 LAEYISEHLLQ 700 (788)
Q Consensus 690 ~A~~~~~~~~~ 700 (788)
.|+..++++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 66666666644
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.9 Score=36.33 Aligned_cols=96 Identities=15% Similarity=0.029 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH--HH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG--CV 646 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l 646 (788)
.+..++..|++.|+.++|++.|.++.+....+.. ..+..++..+...+++..+..+..++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666677766666665433332 3345556666666666666666665533211111111111 11
Q ss_pred --HHHHhhcCChHHHHHHHHhC
Q 035503 647 --VNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 647 --~~~~~~~g~~~~A~~~~~~~ 666 (788)
+-.+...|++.+|.+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567777777777666
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.89 Score=29.11 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++.+|+.+|...|++++|..++++..+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467899999999999999999999987643
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.08 E-value=50 Score=37.07 Aligned_cols=183 Identities=10% Similarity=0.055 Sum_probs=98.0
Q ss_pred HHHHHHHHHH-hCCCC--chhHHHHHHHHHH-hcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHH
Q 035503 302 GKQAHAVAVI-NGMEL--DNVLGSSIINFYS-KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMY 377 (788)
Q Consensus 302 a~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~ 377 (788)
|.+.++.+.+ ..+.| +..++-.+...+. ...+++.|+..+++....... +.+.. ..-.....++..+
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d-------~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTD-------LKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHH-------HHHHHHHHHHHHH
Confidence 4555555553 33333 2345556666665 778888888888865321100 00000 0011233456666
Q ss_pred hhcCChHHHHHHHHhcccC----ChhH----HHHH-HHHHHHcCChhHHHHHHHHHHHcC---CCCchhHHHHHHHHH--
Q 035503 378 AKCERIDNAKQVFNSIILR----DVVL----WNTL-LAAYADLGRSGEASRLFYQMQLEG---ISPNIISWNSVILGF-- 443 (788)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~----~~~~----~~~l-~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~-- 443 (788)
.+.+... |...+++.... .... |..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~ 189 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLH 189 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 6666655 77777665421 1112 2222 222223378999999998877542 234445555555554
Q ss_pred HhcCCHHHHHHHHHHhhhCC---------CCCChhhHHHHHHHH--HhCCCchHHHHHHHHH
Q 035503 444 LRNGQMNEAKDMFLQMQSLG---------VQPNLITWTTLISGL--TQNSCGNEAILFFQEM 494 (788)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~g---------~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m 494 (788)
.+.+..+++.+.++.+.... ..|....|..+++.+ ...|+++.+...++++
T Consensus 190 l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 190 LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566677777777662211 134456666666544 4677776776665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.89 E-value=3.9 Score=39.56 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSK---ELPVYNAMISGYAMHGLAVEALALFKNLQ 596 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 596 (788)
++..++..+..+|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444555555555555555555444332 22344555555555555555555554443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.8 Score=29.59 Aligned_cols=35 Identities=31% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 676 GSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 676 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
..+.-++.+.|+++.|....+.+++.+|++..+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34666788999999999999999999999755443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.39 E-value=51 Score=36.39 Aligned_cols=145 Identities=10% Similarity=-0.066 Sum_probs=92.3
Q ss_pred hHHHHHHHHhcccC-ChhHHHHHHH----H-HHHcCChhHHHHHHHHHHH-------cCCCCchhHHHHHHHHHHhcC--
Q 035503 383 IDNAKQVFNSIILR-DVVLWNTLLA----A-YADLGRSGEASRLFYQMQL-------EGISPNIISWNSVILGFLRNG-- 447 (788)
Q Consensus 383 ~~~A~~~~~~~~~~-~~~~~~~l~~----~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~g-- 447 (788)
...|...++..... ++.....+.. + +....+.+.|+.+|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 56788888777543 4444333332 2 4456789999999999977 44 4446677888888754
Q ss_pred ---CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhC---CCchHHHHHHHHHHhCCCCCCHHHHHHHHHHh--hccCch
Q 035503 448 ---QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQN---SCGNEAILFFQEMLETGIKPSTTTITCALSAC--TDVASL 519 (788)
Q Consensus 448 ---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~ 519 (788)
+.+.|..++....+.|.+ +. -..+...+... .+...|.++|...-+.|..+ ..-...++-.. ....+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCH
Confidence 567799999998887633 32 22333333322 45789999999999887432 22221111111 123467
Q ss_pred HHHHHHHHHHHHcCC
Q 035503 520 RNGRAIHGYLIRHDL 534 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~ 534 (788)
+.|..++.++.+.+.
T Consensus 381 ~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHHccC
Confidence 888888888888874
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.13 E-value=11 Score=35.52 Aligned_cols=176 Identities=13% Similarity=0.132 Sum_probs=95.1
Q ss_pred CHHHHHHHHhhCCC----CC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC--CCHhHHHHHHHHhhccCcH
Q 035503 553 NIHQAKRVFDISPS----KE---LPVYNAMISGYAMHGLAVEALALFKNLQQK---GID--PDSITFTNILNACSHAGLV 620 (788)
Q Consensus 553 ~~~~A~~~~~~~~~----~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~--p~~~~~~~ll~~~~~~g~~ 620 (788)
+.++|+.-|+++.+ +. ..+...++..+.+.|++++-.+.|++|+.- .+. -...+.+++++-.+.+.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555554432 11 123445677777777777777777776531 111 2334556666655555555
Q ss_pred HHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC--C-----CCCH-------HHHHHHHHHH
Q 035503 621 NEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP--C-----DPDA-------HIIGSLLSTC 682 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-----~p~~-------~~~~~l~~~~ 682 (788)
+--.++|+..+....-.-+ ..+-..|+..|...|.+.+-.+++.++. + ..|. ..|-.-+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 4444444433222111111 2333467788887777777777776651 1 1111 2333334556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--CCchH----HHHHHHHHhCCCcHHHHHH
Q 035503 683 VKSNETELAEYISEHLLQLEPD--NPGNY----VALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~--~~~~~----~~l~~~~~~~g~~~~A~~~ 728 (788)
-.+++...-..+|++++....- +|.+. ..=+.++.+.|+|++|..-
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 6777777778888888775432 12222 2224457777888877643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.76 E-value=4.2 Score=36.76 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=63.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCch----
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTMPC---DPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEP--DNPGN---- 708 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~---- 708 (788)
...+..+++.|.+.|+.++|.+.+.++.. .+. ...+..+++.+...+|+........++...-. .+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34566788888888888888888888732 122 34677788888888999888888888766422 22221
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 709 YVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 709 ~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
-..-|-.+...+++.+|.+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 222344566788888888887643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.42 E-value=3.9 Score=37.12 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=50.7
Q ss_pred hHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhCCCcHHHH
Q 035503 656 LDEALRVILTMPCDP--DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD----NPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 656 ~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
-++|.+.|-++...| +....-..+..|....|.++++.++.+++++.+. |+..+..|+.+|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666663332 2233334444566688999999999999987543 5889999999999999998874
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.21 E-value=46 Score=34.68 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---C---------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCC
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPS---K---------ELPVYNAMISGYAMHGLAVEALALFKNLQQ-------KGIDP 602 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p 602 (788)
..-.+.+.-.|++.+|.+++....- + .-..||.|.-.+.+.|.+.-+..+|.+..+ .|++|
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~ 323 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKP 323 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3345566677888888887753321 1 113467777777777877777777776653 35444
Q ss_pred CH-------hHHHH---HHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 603 DS-------ITFTN---ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 603 ~~-------~~~~~---ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
.. ..+.. ..-.|.+.|++-.|.+.|.+....+. .++..|..|+.++
T Consensus 324 ~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh--~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 324 AKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH--RNPRLWLRLAECC 379 (696)
T ss_pred CcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 21 11222 23357788888888888888876543 4556666666654
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.89 E-value=2.1 Score=33.39 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPD--NPGNYVALSNAYAASGR 721 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 721 (788)
.....+...+...|+++.|...+-.+++.+|+ +...-..+..++...|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444444444445555555544444444443 23344444444444444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.80 E-value=50 Score=34.70 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=104.0
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 466 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
.|-...-+++..+..+-.+.-...+..+|+.- .-+...+..++.+|... ..++-..+|+++++..+ .+......|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 35566677788888888888888888888874 45667788888888777 56777888888888887 6666777777
Q ss_pred HHHHHcCCHHHHHHHHhhCCC-----C-Ch---hhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHhh
Q 035503 546 DMYAKCGNIHQAKRVFDISPS-----K-EL---PVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPDSITFTNILNACS 615 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~-----~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 615 (788)
..|.+ ++.+.+...|.++.. + +. ..|..+...- -.+.+..+.+....... |..--.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 77776 777777777765432 1 11 2455554322 23455555555555443 22222344444445566
Q ss_pred ccCcHHHHHHHHHhcHh
Q 035503 616 HAGLVNEGLELFVGMFS 632 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~ 632 (788)
...++++|++++..+++
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 77777777777776654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.76 E-value=22 Score=30.57 Aligned_cols=52 Identities=15% Similarity=-0.035 Sum_probs=29.6
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 035503 516 VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568 (788)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (788)
.++++.+..+++.+.-..| ....+-..-+..+...|+|++|+++|+.+.+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4455555555555555444 233333334555667777777777777776533
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=85.25 E-value=38 Score=32.93 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHH--HHHHH
Q 035503 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF--TNILN 612 (788)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~ 612 (788)
.-++.....++..|.+.|++.+|...|-....++...+..++.... ..|.+.+...| ..++
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~----------------~~~~~~e~dlfi~RaVL- 149 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWS----------------TKGYPSEADLFIARAVL- 149 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHH----------------HHTSS--HHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHH----------------HhcCCcchhHHHHHHHH-
Confidence 3577889999999999999999998776543333222222222222 22222222222 2222
Q ss_pred HhhccCcHHHHHHHHHhcHhh
Q 035503 613 ACSHAGLVNEGLELFVGMFSD 633 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~ 633 (788)
-|...++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 255667788887777666543
|
; PDB: 3LKU_E 2WPV_G. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.03 E-value=43 Score=33.32 Aligned_cols=77 Identities=10% Similarity=-0.087 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-------------
Q 035503 658 EALRVILTMPCDPDAHIIGSLLSTCV----KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG------------- 720 (788)
Q Consensus 658 ~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 720 (788)
.|...+.++...-+......++..|. ...|.++|...|+++-+... ......++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 56666666533334444445554442 23477888888888877666 55666666 666555
Q ss_pred --CcHHHHHHHHHHHHCCC
Q 035503 721 --RWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 721 --~~~~A~~~~~~~~~~~~ 737 (788)
+...|...++.....+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 66777777777766664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.85 E-value=34 Score=34.00 Aligned_cols=133 Identities=10% Similarity=0.130 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHHhhhCCC---CCChhhHHHHHHHHHhCCCc
Q 035503 414 SGEASRLFYQMQLEGISPNIISWNSVILGFLR--NG----QMNEAKDMFLQMQSLGV---QPNLITWTTLISGLTQNSCG 484 (788)
Q Consensus 414 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~ 484 (788)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|.+... .++-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788889999988888777653333332 22 34568889999965422 2233444444332 33333
Q ss_pred ----hHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCc--hHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 485 ----NEAILFFQEMLETGIKPSTT--TITCALSACTDVAS--LRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 485 ----~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
+.+..+|+.+.+.|+..+.. .+..++..+..... ...+..+++.+.+.+.......|..++-.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 45667788888877766543 34444443333222 457788888888888876666666555443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.79 E-value=1.7 Score=28.31 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..|+.+|.+.|+.+.|..+++.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 568899999999999999999988654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.74 E-value=51 Score=33.90 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=102.1
Q ss_pred HcCCHHHHHHHHhhCCCC----ChhhHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCCCCHh----HHHHHHHHhhccCcH
Q 035503 550 KCGNIHQAKRVFDISPSK----ELPVYNAMISG-YAMHGLAVEALALFKNLQQKGIDPDSI----TFTNILNACSHAGLV 620 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~ 620 (788)
-.|+-++|.+.+..+... ....+-.|+.+ .....+..+|+++|++..-. .|-.. ...--+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 368888888888776542 23345555554 44567888999999987653 45332 233333356788999
Q ss_pred HHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 035503 621 NEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCG---NLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISE 696 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 696 (788)
+++..+-....+.+...|-...|. .++..+.+.+ +.+.-..++..|...-....|..+.+.-...|+.+.|....+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 998888777777777777665554 3444444333 334444555555433335688888888899999999999999
Q ss_pred HHHhcCCC
Q 035503 697 HLLQLEPD 704 (788)
Q Consensus 697 ~~~~~~p~ 704 (788)
+++.+...
T Consensus 282 ~A~~L~~~ 289 (421)
T PRK12798 282 RALKLADP 289 (421)
T ss_pred HHHHhccC
Confidence 99988643
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.62 E-value=3.9 Score=39.83 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=72.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTMP----CDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.+|..=++-|.+..++..|...|.+-- ..|| ...|.+-..+-.-.|++..|+.-..++++.+|.+..+|+.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344445677889999999999997761 2344 3456666666677899999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHH
Q 035503 715 AYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 715 ~~~~~g~~~~A~~~~~~~ 732 (788)
++....+.++|....+..
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999977777665544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.46 E-value=15 Score=37.70 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=57.0
Q ss_pred hCCCHHHHH-HHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 581 MHGLAVEAL-ALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 581 ~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
..|+...|- +++.-+....-.|+.......| ..+.|+++.+...+..... -+.....+..+++..+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 445555443 3333333333334444333332 4566666666666555432 2223344555556666666666666
Q ss_pred HHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 660 LRVILTMP-CD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 660 ~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
......+- .+ .+..............|-++++.-.+++.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 66555541 11 12222222223334445556666666666665554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.80 E-value=20 Score=38.29 Aligned_cols=149 Identities=18% Similarity=0.141 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
-.|+++.|..++..++++ .-+.+++.+.++|-.++|+++ .+|...-. ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 345566666555555432 234445555556665555443 22222211 112356777776665543
Q ss_pred cHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 630 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
. .+..-|..|+++....|++..|.+.|.... -|..|+-.+...|+.+.-..+...+.+....
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~----- 724 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN----- 724 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhccc-----
Confidence 3 234456677777777777777777776552 2444555555556655444444444333222
Q ss_pred HHHHHHHHhCCCcHHHHHHHHH
Q 035503 710 VALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+....+|...|++++..+++-.
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHh
Confidence 2334456667777777666543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.76 E-value=3.9 Score=42.95 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=70.5
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPS--MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELA 691 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A 691 (788)
..|+...|...+..+. ...|. ......|+..+.+.|...+|-.++.+. . ....+.++..+++++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4677777877777665 33443 223346777777788888888777665 1 233445777888888888899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 692 EYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 692 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
++.++.+++++|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999998888777766544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.34 E-value=46 Score=32.24 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKEL---PVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
+.+.....|..+|.+.+|.++.++...-|+ ..|-.|+..+...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344456677778888888888777665333 4677788888888887777777776643
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.21 E-value=2.1 Score=39.21 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCcc
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRK 739 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 739 (788)
..+.+|.+.|-++|.+++++-|+....|..++....+.|+.+.|.+.+++.++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4567888889999999999999999999999999999999999999999888876543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.95 E-value=84 Score=35.03 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQS 461 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~ 461 (788)
.|+..|...++++.|..++-.+.+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 377777888888888877766653
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.57 E-value=5.1 Score=38.29 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.++.....|...|.+.+|..+-+++++++|-+...+..|..+|...|+--.|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445566788999999999999999999999999999999999999999999988888754
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.85 E-value=17 Score=37.66 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=68.4
Q ss_pred hhccCcHHHHHHHHHhcHh--hcCC--CCC--c-chHHHHHHHHhhcCChHHHHHHHHhC----------CCCCC-----
Q 035503 614 CSHAGLVNEGLELFVGMFS--DHQV--KPS--M-EHFGCVVNLLSRCGNLDEALRVILTM----------PCDPD----- 671 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~--~~~~--~p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~----- 671 (788)
+.-.|++..|.+++...-. ..|. .|. . ..++.|+....+.|.+.-+..+|.++ ..+|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4456888888887764411 1111 111 1 12246666667777777766666554 11221
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 672 -----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 672 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
.....+.+-.|...|+.-.|.++|.++.+....+|..|..|+.++....
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 1233345556778899999999999999998888999999999886644
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.83 E-value=5.3 Score=36.44 Aligned_cols=63 Identities=16% Similarity=0.033 Sum_probs=48.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
...+..+.+.+.+.+|+...+.- . .+.|...-..++..++..|++++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456778888999998887655 3 334556777888888999999999999998888888853
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.71 E-value=57 Score=32.20 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=25.7
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcH
Q 035503 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 567 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 631 (788)
++...-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+..+.
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 444444444455555554 23444444433321 1 122344455555553 4555555554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.26 E-value=77 Score=33.42 Aligned_cols=175 Identities=10% Similarity=0.097 Sum_probs=119.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHH
Q 035503 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCA 509 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (788)
..|.....+++..+...-...-.+.+..+|...|- +...|..++.+|... ..++-..+++++.+. .-+......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHH
Confidence 45777788889999988888888999999977753 778899999999998 678888999998884 3455555555
Q ss_pred HHHhhccCchHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-----ChhhHHHHHHHH
Q 035503 510 LSACTDVASLRNGRAIHGYLIRHDLCLP-----TPIVTSLVDMYAKCGNIHQAKRVFDISPSK-----ELPVYNAMISGY 579 (788)
Q Consensus 510 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~ 579 (788)
+..+...++.+++..+|..++..-++.. ..+|..+...- ..+.+.-+.+...+... ..+.+..+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 5555555888999999988877554211 11333333211 23455555555544432 223455566678
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
....++++|++++....+.. .-|...-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 88899999999999888764 334444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=81.06 E-value=62 Score=32.20 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCc--HHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 586 VEALALFKNLQQKGIDPDS--ITFTNILNACSHAGL--VNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
+.++.+|+.+...|+..+. .....++..+..... ...+.++++.+.+. ++++...+|..++-+-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 3456667777776665532 222233322222211 33566777777443 7777777776555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.91 E-value=2.6 Score=24.39 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 707 GNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 707 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..+..++.+|...|++++|...++..++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 468899999999999999999999887643
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.85 E-value=1.6 Score=44.74 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-HHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 035503 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-CVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNE 687 (788)
Q Consensus 611 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~ 687 (788)
+......+.++.|+.+|.+++ .+.|+..+|. .-..++.+.+++..|+.=+.++ ...|.. ..|..-+.+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445667788999999998887 6678755544 4457788888888887665555 445543 345555667778888
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
+.+|...+++...+.|+++.+...+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 8999999999999999976655443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=80.83 E-value=14 Score=28.91 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHH
Q 035503 692 EYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYAT 771 (788)
Q Consensus 692 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (788)
+..+++.++.+|+|....+.++..+...|++++|.+.+-.+++.......+.... .-+..|..-...||-+....++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~---~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARK---RLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHH---HHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHH---HHHHHHHHcCCCChHHHHHHHH
Confidence 4456777788888888888888888888888888888877776643322221100 0011133334446666666665
Q ss_pred HHH
Q 035503 772 LAL 774 (788)
Q Consensus 772 l~~ 774 (788)
|-.
T Consensus 85 L~~ 87 (90)
T PF14561_consen 85 LAS 87 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.6 bits (171), Expect = 2e-12
Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 4/124 (3%)
Query: 394 ILRDVVLWNTLLAAYADLGRSGEASRL---FYQMQLEGISPNIISWNSVILGFLRNGQMN 450
+ + A L + + + + +N+V+LG+ R G
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL-FFQEMLETGIKPSTTTITCA 509
E + ++ G+ P+L+++ + + + I ++M + G+K
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 510 LSAC 513
LS
Sbjct: 243 LSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 1e-11
Identities = 27/200 (13%), Positives = 66/200 (33%), Gaps = 13/200 (6%)
Query: 173 MQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGD 232
++ SP L +L+ + +A G + G +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 233 LEEARKVFDGMIAR-------NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
L A + + + +N++++G+ + G +E + V + + G+ P +S
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 286 VTSILSASANLDALDEG-KQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRM 344
+ L D ++ G++L + + +++ + +L+ V
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 345 -----VERDIVTWNLLIASY 359
+ + T LL Y
Sbjct: 263 SLPPQLPPPVNTSKLLRDVY 282
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 1e-11
Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 14/238 (5%)
Query: 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL-------FFQEMLETGIKPS 502
+ + ++MQ L + + + LT+ +L + P
Sbjct: 32 KDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPW 91
Query: 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562
+ L SL +A G + L + + + A +
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 563 I-------SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615
+ L +YNA++ G+A G E + + ++ G+ PD +++ L
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 616 HAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAH 673
+E + S +K +++ R L +V T P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 2e-07
Identities = 20/221 (9%), Positives = 53/221 (23%), Gaps = 16/221 (7%)
Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
P + +L + +LD + + + L A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 341 FSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSI----ILR 396
+ L + Y ++++ +A+ V + +
Sbjct: 150 LVVHHGQRQKRKLLTLDMY-----------NAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 397 DVVLWNTLLAAYADLGRSGEA-SRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDM 455
D++ + L + R QM EG+ + ++ R + +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 456 FLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLE 496
P + + L+ + +
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 3e-12
Identities = 75/478 (15%), Positives = 145/478 (30%), Gaps = 108/478 (22%)
Query: 302 GKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNL---LIAS 358
GK A+ V ++ + I F+ + E V + L + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEML-------QKLLYQIDPN 212
Query: 359 YVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS-IILRDVVLWNTLLAAYADLG----- 412
+ + I + A+ R+ +K N ++L +V N +L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILL 270
Query: 413 --RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM----------Q 460
R + + L + IS + + +E K + L+ +
Sbjct: 271 TTRFKQVTD-----FLSAATTTHISLDHHSMTLTP----DEVKSLLLKYLDCRPQDLPRE 321
Query: 461 SLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLR 520
L P + ++I+ + + + + TT I + +V
Sbjct: 322 VLTTNPRRL---SIIAESIR-----DGLATWDNWKHVNCDKLTTII----ESSLNVLEPA 369
Query: 521 NGRAIHGYL--IRHDLCLPTP----------------IVT-----SLVDMYAKCGNIHQA 557
R + L +PT +V SLV+ K I
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--- 426
Query: 558 KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP---DSITFTNI---L 611
+ I ++ + N YA+H V+ + K + P D +++I L
Sbjct: 427 -SIPSIYLELKVKLENE----YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 612 NACSHAGLVNEGLELFVGMFSDH---QVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPC 668
H E + LF +F D + K + H N N + L+ C
Sbjct: 482 KNIEHP----ERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 669 DPDAH---IIGSLLSTCVKSNETELAEYISEH--LLQLEPDNPGNYVALSNAYAASGR 721
D D ++ ++L + E L S++ LL++ + A+ R
Sbjct: 536 DNDPKYERLVNAIL-DFLPKIEENL--ICSKYTDLLRIALMAEDEAI-FEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 1e-09
Identities = 78/600 (13%), Positives = 164/600 (27%), Gaps = 206/600 (34%)
Query: 7 TTPPNPKFSHTKPQKPLKLSQTHLTKLRESDNSYESLY------KSYFHQISSLSKEK-- 58
K++ ++ Q LKL + L +LR + K++ + K
Sbjct: 122 DNQVFAKYNVSRLQPYLKL-RQALLELR--PAKNVLIDGVLGSGKTWV-ALDVCLSYKVQ 177
Query: 59 -------------QIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARI 105
+L ++ +QI P K +IH+
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK------LRIHSIQ 231
Query: 106 LKNGDFFARNEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEK 165
+ Y LV+ +V + + N F L+C++
Sbjct: 232 AELRRLLKSKPYENCLLVL-----L--NVQNA-----KAWNAF------NLSCKI----- 268
Query: 166 ALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLID 225
L+ + V + L A + + +
Sbjct: 269 -LL---------TTRFKQVT-DFLS------------AATTTHISLDHHSMTLTPDEVKS 305
Query: 226 MYGKC-----GDL-EEARKVFD---GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
+ K DL E +IA ++ + + +N + + E +L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--VNCDKLTTIIESSL 363
Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQA-HAVAVINGMELDNVLGSSIINFYSKV-GLL 334
+EP E ++ ++V + + + + L+
Sbjct: 364 NVLEP------------------AEYRKMFDRLSVFP----PSA------HIPTILLSLI 395
Query: 335 ------EDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK-CERIDNAK 387
D VV +++ + L+ + SI +Y + +++N
Sbjct: 396 WFDVIKSDVMVVVNKLHKY------SLVEKQPKEST------ISIPSIYLELKVKLENEY 443
Query: 388 QVFNSII----LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGF 443
+ SI+ + + L+ Y D + FY +G
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLD--------QYFYSH----------------IGH 479
Query: 444 -LRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ-EMLETGIKP 501
L+N + E +F +F LE I+
Sbjct: 480 HLKNIEHPERMTLFRM------------------------------VFLDFRFLEQKIRH 509
Query: 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP--IVTSLVDMYAKCG-NIHQAK 558
+T + S + L+ + Y+ +D P +V +++D K N+ +K
Sbjct: 510 DSTAWNASGSILNTLQQLKFYK---PYICDND---PKYERLVNAILDFLPKIEENLICSK 563
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 3e-07
Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 12/182 (6%)
Query: 548 YAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607
Y S + EL A H +A + +D + TF
Sbjct: 44 YLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF 103
Query: 608 TNIL-NACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666
+ + + + L S+E V +L + LD A + + M
Sbjct: 104 LLMAASIYFYDQNPDAALRTL-------HQGDSLECMAMTVQILLKLDRLDLARKELKKM 156
Query: 667 ----PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRW 722
+ + +S + + A YI + + + + A GRW
Sbjct: 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 723 NE 724
Sbjct: 217 EA 218
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 30/254 (11%), Positives = 81/254 (31%), Gaps = 27/254 (10%)
Query: 217 VFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTL 276
VF+ + + A + A + + +
Sbjct: 38 VFLYRAYLAQ----RKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMS 93
Query: 277 EGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLED 336
V+ T + + ++ + A+ ++ + + + K+ L+
Sbjct: 94 RSVDVTNTTFLLMAASIY----FYDQNPDAALRTLHQGD-SLECMAMTVQILLKLDRLDL 148
Query: 337 AEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILR 396
A +M ++D + +A++ V + A E++ +A +F + +
Sbjct: 149 ARKELKKMQDQD-------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195
Query: 397 ---DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAK 453
++L N A + GR A + + L+ S + + ++++ G+ E
Sbjct: 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA-LDKDSGHPETLINLVVLSQHLGKPPEVT 254
Query: 454 DMFLQMQSLGVQPN 467
+ +L Q +
Sbjct: 255 NRYLS-QLKDAHRS 267
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 66/433 (15%), Positives = 145/433 (33%), Gaps = 98/433 (22%)
Query: 326 NFYSKVGLLEDAEVVFSRMVERD---IVTWNLLIASYVQSGQSDVVVAS----------- 371
+ + G E AE ++ ++ LL + + Q + D
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 372 -----SIVDMYAKCERIDNAKQVFNSIIL---RDVVLWNTLLAAYADLGRSGEASRLFYQ 423
++ ++Y + ++ A + + + + + L AA G A + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 424 MQLEGISPNII-SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL-ITWTTLISGLTQN 481
L+ +P++ + + G++ EAK +L +++ QPN + W+ L G N
Sbjct: 127 A-LQ-YNPDLYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPNFAVAWSNL--GCVFN 180
Query: 482 SCGN--EAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539
+ G AI F++ + + P +
Sbjct: 181 AQGEIWLAIHHFEKAVT--LDP-------------NFLDAYINLGN-------------- 211
Query: 540 IVTSLVDMYAKCGNIHQAKRVFD----ISPSKELPVYNAMISGYAMHGLAVEALALFKN- 594
+ + +A + +SP V+ + Y GL A+ ++
Sbjct: 212 -------VLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRA 263
Query: 595 LQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDH--QVKPSMEHFGCVVNL-- 649
++ + P + N+ NA G V E + + + ++ P H + NL
Sbjct: 264 IE---LQPHFPDAYCNLANALKEKGSVAEAEDCY-----NTALRLCP--THADSLNNLAN 313
Query: 650 -LSRCGNLDEAL----RVILTMPCDPDAHI-IGSLLSTCVKSNETELAEYISEHLLQLEP 703
GN++EA+ + + P AH + S+L + + + A + +++ P
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ---QQGKLQEALMHYKEAIRISP 370
Query: 704 DNPGNYVALSNAY 716
Y + N
Sbjct: 371 TFADAYSNMGNTL 383
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 17/188 (9%)
Query: 548 YAKCGNIHQAKRVFD----ISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603
Y N +AK + + K ++ ++S + + L L N D
Sbjct: 210 YTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY-SKED 267
Query: 604 SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL---LSRCGNLDEAL 660
+ ++ + + L S + ++ L + L
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSDLLLCKADTLFVRSRFIDVL 325
Query: 661 ----RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
+++ P + D + + L++ +S E IS L+ P+ ++A+ Y
Sbjct: 326 AITTKILEIDPYNLDVYPL--HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383
Query: 717 AASGRWNE 724
+ +E
Sbjct: 384 LCVNKISE 391
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 43/284 (15%), Positives = 90/284 (31%), Gaps = 39/284 (13%)
Query: 231 GDLEEARKVFDGMIARNVVAWNSMIVG--YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTS 288
D + A K+ + A + G Y + A Y+ L V+
Sbjct: 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE-CYKEALM-VDAKCYEAFD 238
Query: 289 ILSASANLDALDEGKQAHAVAVINGMELDN----VLGSSIINFYSKVGLLEDAEVVFSRM 344
L ++ L A +E + + D L +N S L AE
Sbjct: 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE------ 292
Query: 345 VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD---VVLW 401
+ L + SD+++ + R + + I+ D + ++
Sbjct: 293 --------DYLSSINGLEKSSDLLLCKADT--LFVRSRFIDVLAITTKILEIDPYNLDVY 342
Query: 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPN-IISWNSVILGFLRNGQMNEAKDMFLQMQ 460
LA+ + G + + + ++ P ++W +V + +L +++EA+ F +
Sbjct: 343 PLHLASLHESGEKNKLYLISNDL-VD-RHPEKAVTWLAVGIYYLCVNKISEARRYFS--K 398
Query: 461 SLGVQPNLI-TWTTLISGLTQNSCGN--EAILFFQEMLETGIKP 501
S + P W + G +AI + +
Sbjct: 399 SSTMDPQFGPAWIGF--AHSFAIEGEHDQAISAYTTAAR--LFQ 438
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 56/520 (10%), Positives = 134/520 (25%), Gaps = 74/520 (14%)
Query: 223 LIDMYGKCGDLEEARKVFD--GMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVE 280
L +Y GD A+ + + R+ V+ + A+ + E
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE-----TN 177
Query: 281 PTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVV 340
P R + + + G Y+ + + A+
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMC-----------YLRG----QVYTNLSNFDRAKEC 222
Query: 341 FSRMVERD---IVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD 397
+ + D ++ L+++++ + + + + E +
Sbjct: 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS--------- 273
Query: 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFL 457
L+ L + A Y + G+ + + + +
Sbjct: 274 --LYMLKLNKTSHEDELRRAED--YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329
Query: 458 QMQSLGVQPN-LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516
++ + P L + ++ L ++ N+ L ++++ P A+
Sbjct: 330 KILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLC 385
Query: 517 ASLRNGRAIHGY----LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD----ISPSKE 568
+ + A + + P +A G QA + +
Sbjct: 386 VN-KISEARRYFSKSSTMDPQF---GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441
Query: 569 LPVYN-AMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLEL 626
LP M + G + A ++ + D + + + + +
Sbjct: 442 LPYLFLGMQ--HMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINH 497
Query: 627 F--VGMFSDHQVKPSMEHFGCVVNL---LSRCGNLDEAL----RVILTMPCDPDAHI-IG 676
F + NL + D A+ + +L D + H I
Sbjct: 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557
Query: 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716
+ LA L + P+ L A
Sbjct: 558 LVYL---HKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 45/336 (13%), Positives = 97/336 (28%), Gaps = 37/336 (11%)
Query: 412 GRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP-NLIT 470
G + S ++G+ N+ S+ N + + + P +
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVV--MEKDPFHASC 58
Query: 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGY-- 528
I L + + NE ++++ + PS A+ + +N A
Sbjct: 59 LPVHIGTLVELNKANELFYLSHKLVD--LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116
Query: 529 --LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD----ISPSKELPVYN-AMISGYAM 581
+ P + +A QA + + LP+ + Y +
Sbjct: 117 ATTLEKTY---GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE--YGL 171
Query: 582 HGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELF---VGMFSDHQVK 637
+ A F I P D + G + F + +
Sbjct: 172 TNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229
Query: 638 PSMEHFGCVVN----LLSRCGNLDEAL----RVILTMPCDPDAHI-IGSLLSTCVKSNET 688
+++ + ++N + + EAL + ++ +P + + IG + S
Sbjct: 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS---LMGNF 286
Query: 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
E A L L D+ + L + +E
Sbjct: 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 52/265 (19%), Positives = 85/265 (32%), Gaps = 58/265 (21%)
Query: 231 GDLEEARKVFDGMIARN---VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVT 287
GDL + I ++ AW + + +N + AI + LE ++P
Sbjct: 79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV-ALQRCLE-LQPN----- 131
Query: 288 SILSASANLDAL--------DEGKQAHAVAVING--------MELDNVLGSSIINFYSKV 331
NL AL + Q A + L
Sbjct: 132 -------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK----GSPGLT 180
Query: 332 GLLEDAEVVFSRMVERDIVTWNLLIASYVQ--SGQSDVVVASSIVDM---YAKCERIDNA 386
+ + V S + + Y++ D++ + + + A
Sbjct: 181 RRMSKSPVDSSVLEG--------VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232
Query: 387 KQVFNSII-LR--DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN-IISWNSVILG 442
FN+ + +R D LWN L A A+ RS EA Y LE I P I S ++ +
Sbjct: 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA-VEAYTRALE-IQPGFIRSRYNLGIS 290
Query: 443 FLRNGQMNEAKDMFLQMQSLGVQPN 467
+ G EA FL +L +Q
Sbjct: 291 CINLGAYREAVSNFL--TALSLQRK 313
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.25 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.21 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.14 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.13 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.06 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.97 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.94 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.94 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.9 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.75 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.75 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.69 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.65 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.6 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.55 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.55 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.52 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.5 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.49 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.47 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.45 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.45 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.39 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.39 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.24 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.18 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.18 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.16 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.05 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.03 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.91 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.81 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.8 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.77 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.75 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.64 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.55 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.49 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.33 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.31 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.29 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.28 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.27 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.24 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.04 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.6 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.53 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.48 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.24 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.21 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.86 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.86 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.45 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.2 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.18 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.17 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.33 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.04 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.8 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.47 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.71 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.37 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.91 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.7 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.08 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.0 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.36 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.06 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.79 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.51 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.17 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.33 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.29 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.72 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 84.25 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 83.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.56 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.65 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.26 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.05 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.74 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.71 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.57 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=368.57 Aligned_cols=503 Identities=8% Similarity=-0.094 Sum_probs=337.0
Q ss_pred HhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHH
Q 035503 126 YAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVH 205 (788)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 205 (788)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.+ ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34567777788888888888999999999999999999999999999985 4578889999999999999999999999
Q ss_pred HHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC-------------------CcchHHHHHHHHHHCCChhH
Q 035503 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR-------------------NVVAWNSMIVGYVQNGLNEE 266 (788)
Q Consensus 206 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 266 (788)
+.+... +++..+++.++.+|.+.|++++|.++|+++... ++.+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 678899999999999999999999999965433 36789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH--H-HHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHh
Q 035503 267 AIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQ--A-HAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSR 343 (788)
Q Consensus 267 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 343 (788)
|+++|++|.+.+ +.+...+..+...+...+..+.+.. + +..+...+......+|+.++..|.+.
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 285 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE------------ 285 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH------------
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc------------
Confidence 999999998764 2234444444443333322211111 0 22222222222233333334444444
Q ss_pred cCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc--CChhHHHHHHHHHHHcCChhHHHHHH
Q 035503 344 MVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL--RDVVLWNTLLAAYADLGRSGEASRLF 421 (788)
Q Consensus 344 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~ 421 (788)
|++++|.++|+++.. ++..+|+.++..+.+.|++++|+++|
T Consensus 286 -------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 286 -------------------------------------DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp -------------------------------------HHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------chHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 444444444444433 46677777777777777888888888
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 035503 422 YQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKP 501 (788)
Q Consensus 422 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (788)
+++...+ +.+..++..++.+|.+.|++++|..+|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 329 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 405 (597)
T 2xpi_A 329 TKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ 405 (597)
T ss_dssp HHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence 7777664 335667777777777777777777777777543 23456677777777777777777777777776531 22
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 035503 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAM 581 (788)
Q Consensus 502 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 581 (788)
+..++..++.++...|++++|..+++.+.+.++ .+..+|+.++.+|.+
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ--------------------------------GTHLPYLFLGMQHMQ 453 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT--------------------------------TCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------------------cchHHHHHHHHHHHH
Confidence 344555555555555555555555555444433 244556666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc---CCCCC--cchHHHHHHHHhhcCCh
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDH---QVKPS--MEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~ 656 (788)
.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|+++|+++.+.. +..|+ ..++..++.+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 666666666666666543 3356666666667777777777777776665432 44565 56777777777777888
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 657 DEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 657 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
++|.++++++ . .+.+..+|..++.+|...|++++|+..++++++++|+++.++..|+.+|..
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8887777776 2 234678899999999999999999999999999999999999999988754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=368.07 Aligned_cols=500 Identities=9% Similarity=-0.031 Sum_probs=400.8
Q ss_pred hHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHH
Q 035503 227 YGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAH 306 (788)
Q Consensus 227 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 306 (788)
+.+.|.+..+...+..++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677788888889888888999999999999999999999999999985 4678899999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHH-HHHHHHcCCCchhHHHHHHHHHhhcCChHH
Q 035503 307 AVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLL-IASYVQSGQSDVVVASSIVDMYAKCERIDN 385 (788)
Q Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (788)
+.+... +++..+++.++.+|.+.|++++|+++|+++...+....... +..+......+..++..++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 67888999999999999999999999996543321000000 000000002345678888999999999999
Q ss_pred HHHHHHhcccC---ChhHHHHHHHHHHHcCChhHH--HHH-HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035503 386 AKQVFNSIILR---DVVLWNTLLAAYADLGRSGEA--SRL-FYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQM 459 (788)
Q Consensus 386 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a--~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 459 (788)
|.+.|+++... +...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|..+|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999988643 334455554443332222221 111 444544444555667777888999999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChh
Q 035503 460 QSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTP 539 (788)
Q Consensus 460 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 539 (788)
.+. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+..+ .+..
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 374 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAV 374 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHH
T ss_pred hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHH
Confidence 765 5799999999999999999999999999999864 44677899999999999999999999999998876 7888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
++..++.+|.+.|++++|.++|+.+. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999764 3567899999999999999999999999999864 4578899999999999
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-------PCDPD--AHIIGSLLSTCVKSNE 687 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~ 687 (788)
.|++++|+++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999754 2345788999999999999999999999988 34677 6899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+++|+..++++++.+|+++.+|..++.+|.+.|++++|.++++++.+..+
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999988653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-27 Score=250.81 Aligned_cols=376 Identities=14% Similarity=0.103 Sum_probs=305.0
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhH
Q 035503 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVL 400 (788)
Q Consensus 324 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~ 400 (788)
+...+.+.|++++|++.++++.+.++ .+...+..+...+...|++++|...++... +.+..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~ 69 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP---------------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 34567788999999988888755444 344566777788888899999999887765 346678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHh
Q 035503 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480 (788)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 480 (788)
|..+...+.+.|++++|+..|+++.... +.+..++..+..++.+.|++++|...|+++.+.. +.+...+..+...+..
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 8999999999999999999999988763 3345578888999999999999999999887652 2245667778888888
Q ss_pred CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (788)
.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++++.+| .....+..++..+...|++++|...
T Consensus 148 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988742 33467788888888999999999999999999887 6778888899999999999999998
Q ss_pred HhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCC
Q 035503 561 FDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637 (788)
Q Consensus 561 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 637 (788)
|++.. ..+..+|..++.++...|++++|++.|+++.+.+ +.+..++..+..++.+.|++++|+..|+++.+. .+
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 302 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CP 302 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc
Confidence 87554 3456788889999999999999999999988853 335677888888899999999999999988753 23
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 638 PSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 638 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
.+...+..++..+.+.|++++|.+.++++ ...| +..++..++.++...|++++|+..++++++++|+++.+|..++.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 45778888999999999999999999887 3334 466888888999999999999999999999999999999999998
Q ss_pred HHhCCC
Q 035503 716 YAASGR 721 (788)
Q Consensus 716 ~~~~g~ 721 (788)
+.+.|+
T Consensus 383 ~~~~~~ 388 (388)
T 1w3b_A 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHccC
Confidence 887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=242.05 Aligned_cols=355 Identities=13% Similarity=0.097 Sum_probs=311.5
Q ss_pred HHHHHhhcCChHHHHHHHHhcc--cC-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 035503 373 IVDMYAKCERIDNAKQVFNSII--LR-DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449 (788)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (788)
++..+.+.|++++|...++.+. .| +...+..+...+...|++++|...++...... +.+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4566778899999999998875 33 55677788888999999999999999988863 56778999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHH
Q 035503 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGY 528 (788)
Q Consensus 450 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 528 (788)
++|...|+++.... +.+...|..+..++...|++++|...|+++.+. .|+ ...+..+...+...|++++|...++.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999997652 335668999999999999999999999999984 455 45666777888899999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh
Q 035503 529 LIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI 605 (788)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 605 (788)
+++..| .+...+..++..|...|++++|...|+++.. .+...|..+...+...|++++|+..|++..... +.+..
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 999887 6788999999999999999999999987654 455689999999999999999999999988863 33578
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTC 682 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 682 (788)
++..+..++...|++++|+..|+++.+ +.|+ ...+..++.+|.+.|++++|.+.++++ ..+++..++..++..+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 888899999999999999999999974 3454 678889999999999999999999998 2345678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...|++++|+..++++++.+|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=241.68 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=116.2
Q ss_pred cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHH
Q 035503 395 LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTL 474 (788)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 474 (788)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
|.+|++.|++++|.++|++|.+.|..|+..|+..++..++..
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=241.08 Aligned_cols=188 Identities=12% Similarity=0.088 Sum_probs=174.7
Q ss_pred chHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC---------hhHHHHHHHHHHHhCCCCchh
Q 035503 249 VAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA---------LDEGKQAHAVAVINGMELDNV 319 (788)
Q Consensus 249 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 319 (788)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|+..+. ++.|.++|+.|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChh
Q 035503 320 LGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVV 399 (788)
Q Consensus 320 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 399 (788)
+|+.||.+|++.|++++|.++|++|.+.+. .||..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~---------------------------------------------~Pd~~ 141 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI---------------------------------------------QPRLR 141 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC---------------------------------------------CCCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------------------------CCccc
Confidence 999999999999999999999999876655 57899
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHH
Q 035503 400 LWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLT 479 (788)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 479 (788)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hC
Q 035503 480 QN 481 (788)
Q Consensus 480 ~~ 481 (788)
..
T Consensus 222 s~ 223 (501)
T 4g26_A 222 SE 223 (501)
T ss_dssp SH
T ss_pred cC
Confidence 63
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-24 Score=232.47 Aligned_cols=439 Identities=9% Similarity=-0.047 Sum_probs=270.3
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 035503 250 AWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYS 329 (788)
Q Consensus 250 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 329 (788)
.|......+.+.|++++|+..|+++...+ |+..++..+..++...|+++.|...++.+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45556677777888888888888887764 677777777777777788888888877777765 345566777777788
Q ss_pred hcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc----cCChhHHHHHH
Q 035503 330 KVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII----LRDVVLWNTLL 405 (788)
Q Consensus 330 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~ 405 (788)
+.|++++|...|+++...++. +......++..+........+.+.+..+. .++...+....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF---------------NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC---------------CGGGTHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCC---------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 888888887777776443321 11111111111111111111111110000 00000000000
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHh---CC
Q 035503 406 AAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ---NS 482 (788)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g 482 (788)
.... .....|+.......+..+...... ....-+.+...+......+.. .|
T Consensus 150 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (514)
T 2gw1_A 150 ERKD----------------KQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPE 203 (514)
T ss_dssp -----------------------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTT
T ss_pred HHHh----------------hccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhc
Confidence 0000 000111111111000000000000 000001123334444444443 67
Q ss_pred CchHHHHHHHHHHh-----CCCCC--------CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 483 CGNEAILFFQEMLE-----TGIKP--------STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 483 ~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
++++|..+|+++.+ ....| +...+..+...+...|++++|...++.+.+..+. ...+..++.+|.
T Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~ 281 (514)
T 2gw1_A 204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMA 281 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHH
Confidence 77777777777766 21111 2345566666777777888888888877777764 777777788888
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
..|++++|...++.+.. .+..+|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|+..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877775543 345677788888888888888888888887753 23556777777788888888888888
Q ss_pred HHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHH
Q 035503 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM----PCDPD----AHIIGSLLSTCVK---SNETELAEYIS 695 (788)
Q Consensus 627 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~ 695 (788)
++++.+.. +.+...+..++..|.+.|++++|...++++ +..++ ...+..++..+.. .|++++|+..+
T Consensus 361 ~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 361 FSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 88886532 234567778888888888888888888776 22222 3478888888888 88888888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 696 EHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 696 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+++++.+|+++.++..++.+|.+.|++++|...++++.+..+
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 888888888888888888888888888888888888877653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-23 Score=219.25 Aligned_cols=332 Identities=13% Similarity=0.072 Sum_probs=258.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 035503 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLIS 476 (788)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 476 (788)
+...+..+...+.+.|++++|+.+|+++.... +.+..++..+..+|...|++++|...|+++.+.+ +.+...|..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556777777777777777777777777652 3456677777777777777777777777776552 234667777777
Q ss_pred HHHhCCCchHHHHHHHHHHhCCCCCCH----HHHHHH------------HHHhhccCchHHHHHHHHHHHHcCCCCChhH
Q 035503 477 GLTQNSCGNEAILFFQEMLETGIKPST----TTITCA------------LSACTDVASLRNGRAIHGYLIRHDLCLPTPI 540 (788)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 540 (788)
+|...|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...++.+.+..+ .+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 777777777777777777763 3443 333333 4447788999999999999998877 67888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHH------
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD-SITFTNI------ 610 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l------ 610 (788)
+..++.+|.+.|++++|+..|+.+.+ .+..+|..++.+|...|++++|+..|+++... .|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 89999999999999999999987653 56788999999999999999999999999875 444 3444333
Q ss_pred ------HHHhhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHH
Q 035503 611 ------LNACSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGS 677 (788)
Q Consensus 611 ------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ 677 (788)
...|.+.|++++|+.+|+++... .|+ ..++..++.++.+.|++++|++.++++ .. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 67899999999999999999854 455 347789999999999999999999997 33 346789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH------------HHHHhCC-----CcHHHHHHHHH-HHHCCCc
Q 035503 678 LLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS------------NAYAASG-----RWNEVSQVRDI-MKEKGLR 738 (788)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~~~~ 738 (788)
++.+|...|++++|+..++++++++|+++.++..++ ..|...| +.+++.+.+++ .++..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999 4466666 56677888876 4554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-23 Score=227.06 Aligned_cols=356 Identities=13% Similarity=0.015 Sum_probs=192.6
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 035503 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINF 327 (788)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 327 (788)
...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|...++.++... +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888889999999999999988764 4467777888888888888888888888888775 3456677777888
Q ss_pred HHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCC------hhHH
Q 035503 328 YSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRD------VVLW 401 (788)
Q Consensus 328 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 401 (788)
+...|++++|+..|+.+. .++. .....+..+...+...+|...++.+...+ ....
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGD------------------FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred HHHcCCHHHHHHHHHHHh-cCCC------------------CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 888888888888776432 1110 11112233334444455666665554211 1112
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCCCC-----
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPNII-SWNSVILGFLRN--------GQMNEAKDMFLQMQSLGVQPN----- 467 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~g~~~~----- 467 (788)
...+..+....+.+.+...+...... .+... ....+...+... |++++|..+|+++.+.... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~ 240 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRE 240 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhH
Confidence 23333344444444443333222111 11111 222222222211 2556666666666544211 1
Q ss_pred --hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 468 --LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 468 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
...|..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+..+ .+..++..++
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 317 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHH
Confidence 123444455556666666666666666652 34455555556666666666666666666666555 4455555555
Q ss_pred HHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHH
Q 035503 546 DMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNE 622 (788)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 622 (788)
..|...|++++|+..|+.+.. .+..+|..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 555555555555555554322 233455555555555555555555555555432 2233444445555555555555
Q ss_pred HHHHHHhcH
Q 035503 623 GLELFVGMF 631 (788)
Q Consensus 623 A~~~~~~~~ 631 (788)
|+..|+++.
T Consensus 397 A~~~~~~a~ 405 (537)
T 3fp2_A 397 AIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=221.10 Aligned_cols=240 Identities=11% Similarity=-0.017 Sum_probs=157.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
.|..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+..+ .+..++..++.+|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 3444444455555555555555554442 22234444444445555555555555555555444 34445556666666
Q ss_pred HcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
..|++++|...|+... ..+..+|..++..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666665432 2344567777777777788888888888777653 33456677777778888888888888
Q ss_pred HHhcHhhcCCCCC----cchHHHHHHHHhh---cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035503 627 FVGMFSDHQVKPS----MEHFGCVVNLLSR---CGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEH 697 (788)
Q Consensus 627 ~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 697 (788)
++++.....-.++ ...+..++..+.+ .|++++|.+.++++ . .+.+..++..++..+...|++++|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8877654322222 2377788888888 88888888888877 2 233567888899999999999999999999
Q ss_pred HHhcCCCCCchHHHHH
Q 035503 698 LLQLEPDNPGNYVALS 713 (788)
Q Consensus 698 ~~~~~p~~~~~~~~l~ 713 (788)
+++++|+++..+..+.
T Consensus 475 a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 475 SADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHCSSHHHHHHHHH
T ss_pred HHHhccccHHHHHHHH
Confidence 9999999888877663
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-18 Score=194.01 Aligned_cols=364 Identities=12% Similarity=0.131 Sum_probs=283.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCc------hhHHHHHHHHHHcCCC---------chhHHHHHHHHHhhcCChHHH
Q 035503 322 SSIINFYSKVGLLEDAEVVFSRMVERDI------VTWNLLIASYVQSGQS---------DVVVASSIVDMYAKCERIDNA 386 (788)
Q Consensus 322 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A 386 (788)
...+.+|...|.+.+|+++++++.-.+. ..-+.++..-.+.... +......++..+...|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 4456788999999999999999863322 3444565555554422 222344568888999999999
Q ss_pred HHHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 035503 387 KQVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQP 466 (788)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 466 (788)
..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|+..|.+. .
T Consensus 1069 f~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1069 FAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 999998742 2222233332 778899999998854 34678889999999999999999999764 2
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 035503 467 NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546 (788)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 546 (788)
|...|..++.++.+.|++++|.++|....+.. +++...+.++.+|.+.++++....+. + + ++...+..+++
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~--~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-G--PNNAHIQQVGD 1203 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-C--CCHHHHHHHHH
Confidence 78889999999999999999999999888743 44444445888899988888644442 1 2 45566778999
Q ss_pred HHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 035503 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
.+...|++++|...|... ..|..++.+|.+.|++++|++.+++. .+..+|..+..+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999986 46999999999999999999999985 4568888899999999999999876
Q ss_pred HHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh--cCCHHHHHHHHHHHHhcC
Q 035503 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVK--SNETELAEYISEHLLQLE 702 (788)
Q Consensus 627 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 702 (788)
... +..+++.+..++..|.+.|.+++|+.+++.. ..++.. ..|..++..+.+ -++..++.+.|..-+.+.
T Consensus 1273 gl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 543 3456778889999999999999999999777 444333 466666666654 468888888898888877
Q ss_pred C-----CCCchHHHHHHHHHhCCCcHHHHH
Q 035503 703 P-----DNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 703 p-----~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
| .+...|..+..+|.+.|+|+.|..
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7 678899999999999999999984
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=208.52 Aligned_cols=352 Identities=12% Similarity=0.068 Sum_probs=287.7
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 035503 365 SDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVIL 441 (788)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 441 (788)
.+...+..++..+.+.|++++|+.+|+.+. +.+..+|..+...+...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 566688889999999999999999999886 3467889999999999999999999999999874 446788899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCh---hhHHHH------------HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHH
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNL---ITWTTL------------ISGLTQNSCGNEAILFFQEMLETGIKPSTTTI 506 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 506 (788)
+|.+.|++++|...|+++.+.. +.+. ..|..+ ...+...|++++|+..|+++.+.. +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 9999999999999999998762 2233 555555 444889999999999999999853 4567788
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHH--------
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAM-------- 575 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l-------- 575 (788)
..+..++...|++++|...++.+.+..+ .+...+..++.+|...|++++|+..|+.+.. .+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999877 6788999999999999999999999987653 334445444
Q ss_pred ----HHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHH
Q 035503 576 ----ISGYAMHGLAVEALALFKNLQQKGIDPD-----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGC 645 (788)
Q Consensus 576 ----~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 645 (788)
+..+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..++++... .| +...+..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~ 334 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 88999999999999999999885 454 346778888999999999999999998753 35 5788889
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhcCCCC
Q 035503 646 VVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLST------------CVKSN-----ETELAEYISEH-LLQLEPDN 705 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~p~~ 705 (788)
++.+|...|++++|...++++ ...|+ ...+..+..+ |...| +.+++.+.|++ +++..|++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998 45554 4566666633 33334 56788888987 88888884
Q ss_pred Cc----------hHHHHHHHHHhCCCcHHH
Q 035503 706 PG----------NYVALSNAYAASGRWNEV 725 (788)
Q Consensus 706 ~~----------~~~~l~~~~~~~g~~~~A 725 (788)
.. .+..++.+|...|+.+++
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 32 455566666666665543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=215.59 Aligned_cols=434 Identities=12% Similarity=0.043 Sum_probs=282.5
Q ss_pred hhhhhHHHHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 035503 217 VFVASSLIDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSAS 293 (788)
Q Consensus 217 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 293 (788)
...+..+...+.+.|++++|...|+++.. .+...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 45677788888888888888888888743 366788888888888888888888888888764 44677788888888
Q ss_pred cCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHH
Q 035503 294 ANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSI 373 (788)
Q Consensus 294 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l 373 (788)
...|++++|...++ .... .|+. ....+..+...+....|...++.+....+.. ..........
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~------------~~~~~~~~~~ 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGR------------GSQVLPSNTS 166 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------------------CCCCCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccc------------cccccchHhH
Confidence 88888888888885 3322 2221 1223445556666678888888876643311 0111123344
Q ss_pred HHHHhhcCChHHHHHHHHhcccCChh---HHHHHHHHHHHc--------CChhHHHHHHHHHHHcCCCCc--------hh
Q 035503 374 VDMYAKCERIDNAKQVFNSIILRDVV---LWNTLLAAYADL--------GRSGEASRLFYQMQLEGISPN--------II 434 (788)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~~~--------~~ 434 (788)
+..+....+.+.+...+......+.. ....+...+... |++++|..+++++... .|+ ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHH
Confidence 55566666777776666665544433 233333332222 3677888888888765 333 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (788)
++..+...+...|++++|...|+++.+. .|+...|..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 4666667788888888888888888765 3457778888888888888888888888888743 345667778888888
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
..|++++|...++.+++..+ .+...+..++.+|...|++++|...|+.+.. .+...|..++.++...|++++|++.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 88888888888888888876 5667788888888888888888888876543 4556788888888888888888888
Q ss_pred HHHHHHcCCCC-----CHhHHHHHHHHhhcc----------CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCCh
Q 035503 592 FKNLQQKGIDP-----DSITFTNILNACSHA----------GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 592 ~~~m~~~~~~p-----~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 656 (788)
|+++.+..... ....+..+..++... |++++|+..|+++.+. .|
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p------------------ 459 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---DP------------------ 459 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH---CT------------------
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh---CC------------------
Confidence 88876642110 011122222334444 5555555555444321 11
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 657 DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 657 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.+...+..++..+...|++++|+..++++++++|+++..
T Consensus 460 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 460 -------------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred -------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 233455566666666666666666666666666665444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-18 Score=190.08 Aligned_cols=349 Identities=15% Similarity=0.116 Sum_probs=266.0
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHH
Q 035503 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNT 403 (788)
Q Consensus 324 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 403 (788)
+...+...|.+++|..+|++....+ .++-..+...+++++|.++.++. .+..+|..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~----------------------~A~~VLie~i~nldrAiE~Aerv--n~p~vWsq 1110 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNT----------------------SAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQ 1110 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHH----------------------HHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHH
Confidence 4556667777777777777754211 11112223677899999998876 45778999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCC
Q 035503 404 LLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSC 483 (788)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 483 (788)
+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 999999999999999999664 467788889999999999999999999887654 333334458999999998
Q ss_pred chHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 484 GNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
+++...+ +. .++...+..+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++
T Consensus 1183 leele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8854433 22 456677778999999999999999999885 4788999999999999999999997
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cch
Q 035503 564 SPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEH 642 (788)
Q Consensus 564 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 642 (788)
. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+ ++.+. ...
T Consensus 1247 A--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gm 1316 (1630)
T 1xi4_A 1247 A--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGM 1316 (1630)
T ss_pred h--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHH
Confidence 7 5568899999999999999999887654 33456667788889999999999999998776 55544 455
Q ss_pred HHHHHHHHhh--cCChHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------c
Q 035503 643 FGCVVNLLSR--CGNLDEALRVILTM-PCD------PDAHIIGSLLSTCVKSNETELAEYISEHLLQ------------L 701 (788)
Q Consensus 643 ~~~l~~~~~~--~g~~~~A~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~ 701 (788)
|+.|+.+|.+ -++.-++.++|.+- ..+ .+...|..+...|.+.|+++.|....-.... .
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 6667777754 55777777777654 332 2456899999999999999999843332221 2
Q ss_pred CCCCCchHHHHHHHHHhCC---------------CcHHHHHHHH
Q 035503 702 EPDNPGNYVALSNAYAASG---------------RWNEVSQVRD 730 (788)
Q Consensus 702 ~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 730 (788)
.+.+++.|+..+..|...+ +++.+.++++
T Consensus 1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 4667888888888888777 7777777776
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=188.67 Aligned_cols=312 Identities=12% Similarity=0.047 Sum_probs=200.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGL 478 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 478 (788)
..+..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...|+++.+.. +.+...|..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 445556666666666677777666666652 3345566666666677777777777777665442 22456666666777
Q ss_pred HhCCCchHHHHHHHHHHhCCCCC---C-HHHHHHH------------HHHhhccCchHHHHHHHHHHHHcCCCCChhHHH
Q 035503 479 TQNSCGNEAILFFQEMLETGIKP---S-TTTITCA------------LSACTDVASLRNGRAIHGYLIRHDLCLPTPIVT 542 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p---~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 542 (788)
...|++++|...|+++.+. .| + ...+..+ ...+...|++++|...++.+.+..+ .+..++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 7777777777777777653 34 2 2222222 4566677777777777777777766 5667777
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHH-----------
Q 035503 543 SLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT----------- 608 (788)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----------- 608 (788)
.++.++...|++++|...++.+.. .+..+|..++..+...|++++|+..|++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHH
Confidence 777777777777777777775543 445667777777777788888888887777643 12222222
Q ss_pred -HHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-----chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 035503 609 -NILNACSHAGLVNEGLELFVGMFSDHQVKPSM-----EHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLS 680 (788)
Q Consensus 609 -~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~ 680 (788)
.+...+...|++++|+..++++... .|+. ..+..++.++.+.|++++|.+.++++ . .+.+...|..++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 2244566777777777777777643 2332 22335667777777777777777766 2 2234566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
.+...|++++|+..++++++++|+++.++..+..++...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 777777777777777777777777777777666665443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-19 Score=182.92 Aligned_cols=299 Identities=14% Similarity=0.079 Sum_probs=251.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035503 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALS 511 (788)
Q Consensus 432 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 511 (788)
|...+..+...+...|++++|...|+++.+.. +.+...|..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667788899999999999999999997652 3467889999999999999999999999999853 335678888999
Q ss_pred HhhccCchHHHHHHHHHHHHcCCC--CChhHHHHH------------HHHHHHcCCHHHHHHHHhhCCC---CChhhHHH
Q 035503 512 ACTDVASLRNGRAIHGYLIRHDLC--LPTPIVTSL------------VDMYAKCGNIHQAKRVFDISPS---KELPVYNA 574 (788)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 574 (788)
.+...|++++|...++.+.+..+. .+...+..+ +..+...|++++|+..++.+.+ .+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999987651 233344444 6889999999999999987643 56678999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-chHH---------
Q 035503 575 MISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-EHFG--------- 644 (788)
Q Consensus 575 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~--------- 644 (788)
+..++...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+. .|+. ..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 9999999999999999999998864 446788888999999999999999999999754 3443 3222
Q ss_pred ---HHHHHHhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 645 ---CVVNLLSRCGNLDEALRVILTM-PCDPD-A----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 645 ---~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
.++..+.+.|++++|.+.++++ ...|+ . ..+..++..+...|++++|+..++++++.+|+++.++..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3377799999999999999987 22333 2 2355678889999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHCC
Q 035503 716 YAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 716 ~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|...|++++|...++++.+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999998754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-19 Score=182.45 Aligned_cols=289 Identities=11% Similarity=-0.015 Sum_probs=192.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035503 431 PNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCAL 510 (788)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (788)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344444455555555555555555555554331 2233444445555555566666666666655531 22344555555
Q ss_pred HHhhccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHH
Q 035503 511 SACTDVA-SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAV 586 (788)
Q Consensus 511 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 586 (788)
..+...| ++++|...++.+++..+ .+...+..++.++...|++++|+..|+.... .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5555555 56666666666665554 4455666667777777777777777665432 33456666777777888888
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC-------CCCCcchHHHHHHHHhhcCChHHH
Q 035503 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ-------VKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 587 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
+|++.++++.+.. +.+...+..+...+...|++++|...++++..... .+.....+..++.+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888877653 33556777777778888888888888887765321 123356778888899999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhCCCcH
Q 035503 660 LRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY-AASGRWN 723 (788)
Q Consensus 660 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 723 (788)
.+.++++. .+.+...|..++..+...|++++|+..++++++++|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99888872 2335678889999999999999999999999999999999999999988 5566543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-19 Score=179.23 Aligned_cols=267 Identities=14% Similarity=0.061 Sum_probs=231.6
Q ss_pred CCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHH
Q 035503 464 VQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTS 543 (788)
Q Consensus 464 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 543 (788)
.+.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...++.+++..+ .+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 34577788889999999999999999999998753 44455666778888999999999999999999887 67888999
Q ss_pred HHHHHHHcC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc
Q 035503 544 LVDMYAKCG-NIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619 (788)
Q Consensus 544 l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 619 (788)
++..+...| ++++|...|+.... .+...|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 999999999 99999999987654 456789999999999999999999999998864 3345677778889999999
Q ss_pred HHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC----C-------CCCHHHHHHHHHHHHhcCC
Q 035503 620 VNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP----C-------DPDAHIIGSLLSTCVKSNE 687 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-------~p~~~~~~~l~~~~~~~g~ 687 (788)
+++|...++++.+ ..|+ ...+..++..+.+.|++++|...++++. . +.....+..++..+...|+
T Consensus 175 ~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 175 SKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999974 4454 6778899999999999999999998871 1 3345789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 688 TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 688 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+++|+..++++++.+|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-17 Score=177.84 Aligned_cols=378 Identities=10% Similarity=-0.001 Sum_probs=290.6
Q ss_pred chhHHHHHHHHHHh----cCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhh----cCChHHHHH
Q 035503 317 DNVLGSSIINFYSK----VGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAK----CERIDNAKQ 388 (788)
Q Consensus 317 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 388 (788)
+......+...|.. .+++++|...|++..+.+ ++..+..|...|.. .+++++|..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----------------YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455556666666 677777777777654322 23355566666666 777888888
Q ss_pred HHHhcccC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHh
Q 035503 389 VFNSIILR-DVVLWNTLLAAYAD----LGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----NGQMNEAKDMFLQM 459 (788)
Q Consensus 389 ~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~ 459 (788)
.|++.... ++..+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|...|++.
T Consensus 101 ~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 101 WYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 88776543 56677778888877 788999999999988765 56677777788877 78899999999998
Q ss_pred hhCCCCCChhhHHHHHHHHHh----CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHH
Q 035503 460 QSLGVQPNLITWTTLISGLTQ----NSCGNEAILFFQEMLETGIKPSTTTITCALSACTD----VASLRNGRAIHGYLIR 531 (788)
Q Consensus 460 ~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~ 531 (788)
.+.| +...+..+...|.. .+++++|..+|++..+.+ +......+...+.. .++.++|...++.+.+
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 7764 67788888888887 889999999999988754 45566666666664 7889999999999887
Q ss_pred cCCCCChhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCC
Q 035503 532 HDLCLPTPIVTSLVDMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISGYAMH-----GLAVEALALFKNLQQKGID 601 (788)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~ 601 (788)
.+ +...+..++.+|.. .++.++|+..|+...+ .+..++..+...|... +++++|+.+|++..+.+
T Consensus 252 ~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 252 QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 64 45677888888888 8999999999987654 5667788888888887 89999999999998865
Q ss_pred CCHhHHHHHHHHhhccC---cHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHH
Q 035503 602 PDSITFTNILNACSHAG---LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDEALRVILTMPCDPDAHI 674 (788)
Q Consensus 602 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~ 674 (788)
+...+..+...|...| ++++|+++|++..+. .++..+..|+.+|.. .++.++|.++++++....+...
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a 401 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAA 401 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 4556666777776656 889999999998753 467788899999988 8999999999999844456778
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 675 IGSLLSTCVK----SNETELAEYISEHLLQLEPD---NPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 675 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
+..++..|.. .++.++|...|+++++.+|+ ++.....|+.++.+. .+.|.+..++.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~~~a~~~ 464 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHHHHHHHH
Confidence 8899999987 89999999999999999954 778888888776643 34444333333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-16 Score=172.83 Aligned_cols=352 Identities=10% Similarity=0.002 Sum_probs=298.7
Q ss_pred CchhHHHHHHHHHhh----cCChHHHHHHHHhccc-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCchhH
Q 035503 365 SDVVVASSIVDMYAK----CERIDNAKQVFNSIIL-RDVVLWNTLLAAYAD----LGRSGEASRLFYQMQLEGISPNIIS 435 (788)
Q Consensus 365 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~ 435 (788)
.++.....+...|.. .+++++|...|++... .++..+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 344566677777777 8999999999998764 477788889999998 899999999999998875 5677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHh----CCCchHHHHHHHHHHhCCCCCCHHHHH
Q 035503 436 WNSVILGFLR----NGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ----NSCGNEAILFFQEMLETGIKPSTTTIT 507 (788)
Q Consensus 436 ~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (788)
+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7778888888 889999999999997775 67788888888887 889999999999999864 567777
Q ss_pred HHHHHhhc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHH
Q 035503 508 CALSACTD----VASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISG 578 (788)
Q Consensus 508 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~ 578 (788)
.+...+.. .++.++|...++++.+.+ +...+..++.+|.. .+++++|...|+...+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 899999999999999875 46788889999987 8999999999987654 566778888888
Q ss_pred HHh----CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc-----CcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 579 YAM----HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA-----GLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 579 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
|.. .++.++|+++|++..+.| +...+..+...|... +++++|+.+|++..+. .+...+..++.+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 888 899999999999988764 455666777777776 8999999999998653 345677788888
Q ss_pred HhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----
Q 035503 650 LSRCG---NLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYVALSNAYAA---- 718 (788)
Q Consensus 650 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 718 (788)
|.+.| +.++|.++++++....++..+..++..|.. .+++++|+..++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 889999999998544678899999999988 899999999999998864 68899999999999
Q ss_pred CCCcHHHHHHHHHHHHCCC
Q 035503 719 SGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~~~ 737 (788)
.+++++|...|++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-16 Score=175.43 Aligned_cols=399 Identities=11% Similarity=0.055 Sum_probs=269.3
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc--
Q 035503 317 DNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII-- 394 (788)
Q Consensus 317 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 394 (788)
+...|..++. +.+.|++++|..+|+++.+..+ .+...+..++..+.+.|++++|..+|++..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P---------------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFP---------------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 4455555665 3556666666666666655544 334455666666666666777777776664
Q ss_pred cCChhHHHHHHHHH-HHcCChhHHHH----HHHHHHHc-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 035503 395 LRDVVLWNTLLAAY-ADLGRSGEASR----LFYQMQLE-GISP-NIISWNSVILGFLR---------NGQMNEAKDMFLQ 458 (788)
Q Consensus 395 ~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~m~~~-~~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~ 458 (788)
.|++..|...+... ...|+.++|.+ +|++.+.. |..| +...|...+....+ .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 24555565555432 34566665554 66665543 4443 34455555555443 5777888888888
Q ss_pred hhhCCCCCChhhHHHHHHHH-------------HhCCCchHHHHHHHHH------HhCC---CCCCH--------HHHHH
Q 035503 459 MQSLGVQPNLITWTTLISGL-------------TQNSCGNEAILFFQEM------LETG---IKPST--------TTITC 508 (788)
Q Consensus 459 ~~~~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~---~~p~~--------~~~~~ 508 (788)
..+....+....|....... .+.+++..|..+++++ .+.. ++|+. ..|..
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 76631111123333222211 1234566777766653 2211 24431 33443
Q ss_pred HHHHhhc----cCch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHH-------cCCHH-------HHHHHHhhCCC
Q 035503 509 ALSACTD----VASL----RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK-------CGNIH-------QAKRVFDISPS 566 (788)
Q Consensus 509 ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~ 566 (788)
.+..... .++. ..+..++++++...| .++.+|..++..+.+ .|+++ +|..+|++...
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 3332221 1222 367789999999877 778899999998886 79987 89999987653
Q ss_pred ----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-
Q 035503 567 ----KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS--ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS- 639 (788)
Q Consensus 567 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~- 639 (788)
.+...|..++..+.+.|++++|..+|+++++. .|+. ..|..++..+.+.|++++|..+|+++.+ ..|.
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~ 389 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTR 389 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCC
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCc
Confidence 34678999999999999999999999999985 5542 4788888888889999999999999974 3444
Q ss_pred cchHHHHHHH-HhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHH
Q 035503 640 MEHFGCVVNL-LSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG----NYVAL 712 (788)
Q Consensus 640 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l 712 (788)
...+...+.. +...|+.++|..+|+++ .. +.+...|..++..+...|+.++|+.+|+++++..|.++. .|...
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3344333333 34689999999999987 22 335788999999999999999999999999999887665 78788
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 713 SNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+......|+.+.+..+++++.+.-+
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 8888899999999999999877653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=181.71 Aligned_cols=281 Identities=10% Similarity=-0.021 Sum_probs=200.2
Q ss_pred cCCHHHHHH-HHHHhhhCCC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHH
Q 035503 446 NGQMNEAKD-MFLQMQSLGV---QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521 (788)
Q Consensus 446 ~g~~~~A~~-~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 521 (788)
.|++++|.. .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 5555432211 1124456666666666677777777776666642 3344556666666666677777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHH----------------HHHHHHHhC
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYN----------------AMISGYAMH 582 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----------------~l~~~~~~~ 582 (788)
|...++.+++..+ .+..++..++.+|...|++++|...|+.+.. .+...+. .+...+ ..
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc
Confidence 7777776666665 4566666677777777777777777664432 1111121 233334 88
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHH
Q 035503 583 GLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEAL 660 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 660 (788)
|++++|+..|+++.+..... +..++..+...+...|++++|+..|+++... .|+ ...+..++..+.+.|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998864221 4778888899999999999999999998753 344 678889999999999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhCCCcHHHHH
Q 035503 661 RVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN-----------PGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 661 ~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
+.++++ . .+.+...+..++.++...|++++|+..+++++++.|++ +.+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 2 23456789999999999999999999999999999987 7899999999999999999999
Q ss_pred HHHHH
Q 035503 728 VRDIM 732 (788)
Q Consensus 728 ~~~~~ 732 (788)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 88754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-17 Score=177.76 Aligned_cols=363 Identities=12% Similarity=0.037 Sum_probs=247.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhccc-----------C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHc-----C-
Q 035503 367 VVVASSIVDMYAKCERIDNAKQVFNSIIL-----------R-DVVLWNTLLAAYADLGRSGEASRLFYQMQLE-----G- 428 (788)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~- 428 (788)
...|+.|..++...|++++|++.|++... + ...+|+.+...|...|++++|...+++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 44788899999999999999999987531 2 3467999999999999999999999988753 1
Q ss_pred CCC-chhHHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCChhhHHHHHHH---HHhCCCchHHHHHHHHHHhCCCCCC
Q 035503 429 ISP-NIISWNSVILGFLR--NGQMNEAKDMFLQMQSLGVQPNLITWTTLISG---LTQNSCGNEAILFFQEMLETGIKPS 502 (788)
Q Consensus 429 ~~~-~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (788)
..+ ...++..+..++.+ .+++++|+..|++..+.. +-++..+..+..+ +...++.++|++.+++.++. .|+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 112 23556666555555 457999999999987652 2245555555544 44568889999999998874 444
Q ss_pred -HHHHHHHHHHhh----ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHH
Q 035503 503 -TTTITCALSACT----DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNA 574 (788)
Q Consensus 503 -~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 574 (788)
...+..+...+. ..++.++|..+++.+....+ ....++..++..|...|++++|+..|++..+ .+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 444444444333 45678899999999999888 7788899999999999999999999987654 44556777
Q ss_pred HHHHHHhC-------------------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 575 MISGYAMH-------------------GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 575 l~~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
+..+|... +..++|+..+++..+.. +.+...+..+...+...|++++|+..|++++..
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 76665432 33567888888877754 345567788888999999999999999988743
Q ss_pred CCCCcc----hHHHHHHH-HhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 636 VKPSME----HFGCVVNL-LSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 636 ~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
.|+.. .+..++.. +...|+.++|+..++++ ...|+...+. +....++.+++++++.+|+++.+|
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34432 23334433 35788999999999887 4556543322 223456678888999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEE
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWI 746 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 746 (788)
..||.+|...|++++|.+.|++.++.+.......+|+
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999999886554444553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-18 Score=169.79 Aligned_cols=282 Identities=12% Similarity=0.107 Sum_probs=105.4
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHH
Q 035503 228 GKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHA 307 (788)
Q Consensus 228 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 307 (788)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 8999999999999999999999652 577788888888888888888888777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHH
Q 035503 308 VAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAK 387 (788)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (788)
...+. .++..+.+.++.+|.+.|+++++.++++.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------------------------------------- 119 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING-------------------------------------------- 119 (449)
T ss_dssp -------------------------CHHHHTTTTTC--------------------------------------------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------------------------------------------
Confidence 76664 34456677777777777777776655532
Q ss_pred HHHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 035503 388 QVFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN 467 (788)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~ 467 (788)
|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .+
T Consensus 120 --------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~ 176 (449)
T 1b89_A 120 --------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 176 (449)
T ss_dssp --------C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TC
T ss_pred --------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CC
Confidence 23345566666666666666666666644 24566666666666666666666665 15
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (788)
+.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.++++..+++..+.... ....+|+.++.+
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~-ah~~~ftel~il 250 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAIL 250 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT-CCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHH
Confidence 566666666666666666664433332 12222233455666666666666666666666553 566677777777
Q ss_pred HHH--cCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhCCCHHHHHHHH
Q 035503 548 YAK--CGNIHQAKRVFDISPS--------KELPVYNAMISGYAMHGLAVEALALF 592 (788)
Q Consensus 548 ~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~ 592 (788)
|++ .+++.+.++.|..-.. .+...|..++-.|...++++.|....
T Consensus 251 ~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 251 YSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 765 3566667776654332 23457888888888999998887743
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=172.97 Aligned_cols=257 Identities=10% Similarity=-0.023 Sum_probs=172.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (788)
|..+...+.+.|++++|..+|+++++.. +.+..++..+...+...|++++|...++++++..+ .+...+..++.+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 4444444444444444444444444421 22333444444444444555555555554444443 344455555555555
Q ss_pred cCCHHHHHHHHhhCCCCC-------------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHhhc
Q 035503 551 CGNIHQAKRVFDISPSKE-------------LPVYNAMISGYAMHGLAVEALALFKNLQQKGID-PDSITFTNILNACSH 616 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~ 616 (788)
.|++++|+..|+++...+ ...+..+...+...|++++|+..|+++.+.... ++...+..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 555555555555443211 123445678889999999999999999886422 157788888899999
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
.|++++|+..|+++.+.. +.+...+..++.+|.+.|++++|++.++++ ...| +..++..++.+|...|++++|+..
T Consensus 226 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987542 234778889999999999999999999887 3333 477899999999999999999999
Q ss_pred HHHHHhcCCC------------CCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 695 SEHLLQLEPD------------NPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 695 ~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+++++++.|+ +..+|..++.++...|+.+.+....++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999887 367899999999999999998887764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-17 Score=169.09 Aligned_cols=249 Identities=15% Similarity=0.099 Sum_probs=145.4
Q ss_pred HhhcCChHHHHH-HHHhccc---C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 035503 377 YAKCERIDNAKQ-VFNSIIL---R----DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQ 448 (788)
Q Consensus 377 ~~~~~~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 448 (788)
+.-.|++++|.. .|++... . +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888888 7776542 1 34568888899999999999999999998874 4567788888899999999
Q ss_pred HHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHH-HHHH---------------HHHH
Q 035503 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTT-TITC---------------ALSA 512 (788)
Q Consensus 449 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~---------------ll~~ 512 (788)
+++|...|+++.+.. +.+...|..+..++...|++++|...++++... .|+.. .+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999987653 346788889999999999999999999999874 34332 2111 1222
Q ss_pred hhccCchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLCL-PTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEA 588 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 588 (788)
+...|++++|...++.+++..+.. +..++..++.+|...|++++|+..|+.+.. .+..+|..++.++...|++++|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 225555555555555555554421 344444555555555555555554443321 2233444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 589 LALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 589 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
+..|+++.+.. +.+...+..+..++.+.|++++|...|+++
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444431 122334444444444444444444444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=167.59 Aligned_cols=287 Identities=13% Similarity=0.093 Sum_probs=128.2
Q ss_pred HhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcccCChhHHHHHHHHH
Q 035503 329 SKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAY 408 (788)
Q Consensus 329 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (788)
-+.|++++|.++++++..+ .+|..++.++.+.|++++|++.|.+. +|..+|..++..+
T Consensus 14 ~~~~~ld~A~~fae~~~~~--------------------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~a 71 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--------------------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--------------------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 3667788888888887433 25667777777888899999888654 5677888888888
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHH
Q 035503 409 ADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI 488 (788)
Q Consensus 409 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 488 (788)
...|++++|+.+++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|.
T Consensus 72 e~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------CC----------------CTTTHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999977766654 4557778888899999999988887774 357778999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 035503 489 LFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE 568 (788)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (788)
.+|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.++...|+++.|......+. .+
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ 206 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VH 206 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC
Confidence 999876 36788888889999999998888887 467888888899999999999977776654 44
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh--ccCcHHHHHHHHHhcHhhcCCCC------Cc
Q 035503 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS--HAGLVNEGLELFVGMFSDHQVKP------SM 640 (788)
Q Consensus 569 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~p------~~ 640 (788)
+.-...++..|.+.|++++|+.++++.+... +-....|+.+.-+|+ +-++..+.++.|..- -.++| +.
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~ 282 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQA 282 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHH
Confidence 4445568888889999999999998866443 223445555544444 345555555555432 25555 36
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
..|..++..|...++++.|...+-+.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 67778888888889988887766555
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-16 Score=159.38 Aligned_cols=272 Identities=10% Similarity=0.006 Sum_probs=192.8
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHH
Q 035503 443 FLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNG 522 (788)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 522 (788)
....|++..|+..++.+......+.......+..+|...|++++|+..++.. -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456666666666665543311111223344566677777777766655431 244555666666666777777777
Q ss_pred HHHHHHHHHcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 035503 523 RAIHGYLIRHDL-CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGID 601 (788)
Q Consensus 523 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 601 (788)
.+.++.++..+. +.+..++..++.+|...|++++|++.++. ..+...+..++..+.+.|++++|++.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 777777766542 24566778888999999999999999998 5677889999999999999999999999998864
Q ss_pred CCHhHH---HHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHH
Q 035503 602 PDSITF---TNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIG 676 (788)
Q Consensus 602 p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 676 (788)
|+.... ..++..+...|++++|..+|+++.+. .+.+...+..++.++.+.|++++|.+.++++ ... .++.++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 554321 12233445669999999999999865 3445778888999999999999999999887 333 3566888
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHH
Q 035503 677 SLLSTCVKSNETEL-AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 677 ~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 728 (788)
.++..+...|+.++ +...++++++++|+++.+.. +..+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 88888888888765 57888999999999876643 45555555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=168.41 Aligned_cols=275 Identities=9% Similarity=-0.029 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACT 514 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (788)
.+..+...+...|++++|..+|+++.+.. +.+...|..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455556666666666666666664432 2245555556666666666666666666665532 223444555555555
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHH-HH-HHHhCCCHHHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAM-IS-GYAMHGLAVEALALF 592 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~ 592 (788)
..|++++|...++.+.+..+. +...+..+.... ++......+ .. .+...|++++|+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 555555555555555554442 111111110000 000001111 22 366778899999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCC
Q 035503 593 KNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDP 670 (788)
Q Consensus 593 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p 670 (788)
+++.+.. +.+...+..+...+...|++++|+..++++.... +.+...+..++..+.+.|++++|.+.++++ . .+.
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9988764 3467788888888999999999999999887532 234677889999999999999999999887 2 234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD------------NPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
+...+..++..+...|++++|+..++++++..|+ ++..+..++.+|.+.|++++|..++++.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999 78899999999999999999999987543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=168.63 Aligned_cols=233 Identities=12% Similarity=0.003 Sum_probs=197.4
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 035503 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISG 578 (788)
Q Consensus 502 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 578 (788)
+...+......+...|++++|...++.+++..+ .+..++..++.+|...|++++|+..|+++.. .+..+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345588888899999999999999999999988 6788999999999999999999999987653 556789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCH-h----------HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHH
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDS-I----------TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVV 647 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~----------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 647 (788)
|...|++++|+..|+++.+.. |+. . .+..+...+...|++++|+.+|+++.....-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998853 332 2 223346788999999999999999986533223578888999
Q ss_pred HHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHH
Q 035503 648 NLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 725 (788)
..|.+.|++++|++.++++ . .+.+..+|..++.+|...|++++|+..++++++.+|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 2 3345779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 035503 726 SQVRDIMKEKGL 737 (788)
Q Consensus 726 ~~~~~~~~~~~~ 737 (788)
...++++++..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-14 Score=156.79 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=91.0
Q ss_pred HHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCC
Q 035503 206 GYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPT 282 (788)
Q Consensus 206 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 282 (788)
+..++.. +.+..+|..++. +.+.|++++|..+|+++... +...|...+..+.+.|++++|..+|+++... .|+
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Confidence 3334443 556677777777 46678888888888877442 4456777777778888888888888887764 366
Q ss_pred HHHHHHHHHHh-cCcCChhHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChhHHHHHHHhcCC
Q 035503 283 RVSVTSILSAS-ANLDALDEGKQ----AHAVAVIN-GMEL-DNVLGSSIINFYSK---------VGLLEDAEVVFSRMVE 346 (788)
Q Consensus 283 ~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 346 (788)
...|...+... ...|+.+.|.+ +++..+.. |..+ +...|...+....+ .|+++.|+.+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66665555422 23466665554 56655543 4443 45567777766554 7889999999999876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=158.17 Aligned_cols=248 Identities=11% Similarity=0.022 Sum_probs=202.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGIKPST--TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. ..+ ++...+..++..+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~-~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSA-PELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSC-HHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCC-hhHHHHHHHHHHHcCCC
Confidence 3445678999999999988654 34544 3456678899999999999876644 233 56678888999999999
Q ss_pred CHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 553 NIHQAKRVFDISP-----SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 553 ~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
+.++|++.++.+. ..+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998753 23456778888999999999999999988 457788888899999999999999999
Q ss_pred HhcHhhcCCCCCcchH---HHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 628 VGMFSDHQVKPSMEHF---GCVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 628 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.++.++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999754 4664322 12334455669999999999998 244567889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCcHH-HHHHHHHHHHCCC
Q 035503 703 PDNPGNYVALSNAYAASGRWNE-VSQVRDIMKEKGL 737 (788)
Q Consensus 703 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 737 (788)
|+++.++.+++.++...|++++ +.++++++++..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999986 5789999887663
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=164.95 Aligned_cols=398 Identities=12% Similarity=-0.012 Sum_probs=208.4
Q ss_pred cchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhC-CCCchhHHHHHHH
Q 035503 248 VVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING-MELDNVLGSSIIN 326 (788)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 326 (788)
+..||.|..++...|++++|++.|++..+. ........ ......+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 446777777777778888887777765431 00000000 1223456778888
Q ss_pred HHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHH-cCCCchhHHHHHHHHHhh--cCChHHHHHHHHhcc--cC-ChhH
Q 035503 327 FYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQ-SGQSDVVVASSIVDMYAK--CERIDNAKQVFNSII--LR-DVVL 400 (788)
Q Consensus 327 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~--~~-~~~~ 400 (788)
+|...|++++|...+++..+-... +.. .....+.++..+..++.. .+++++|+..|++.. .| ++..
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEK--------FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH--------SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHh--------cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 888889988888887765321000 000 001112233333333333 345777777777664 23 3444
Q ss_pred HHHHHHH---HHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhhHHH
Q 035503 401 WNTLLAA---YADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----NGQMNEAKDMFLQMQSLGVQPNLITWTT 473 (788)
Q Consensus 401 ~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 473 (788)
+..+... +...++.++|++.+++.++.. +.+..++..+...+.. .+++++|..++++..... +.+...+..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 4444333 334566677777777776653 2334444444444433 355667777777765442 235566677
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
+...|...|++++|...+++..+. .|+ ..++..+..++...+....+ .. ...........+
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~ 314 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLE 314 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHh
Confidence 777777777777777777777663 343 33444443333221110000 00 000111111223
Q ss_pred CHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHH-HhhccCcHHHHHHH
Q 035503 553 NIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI--TFTNILN-ACSHAGLVNEGLEL 626 (788)
Q Consensus 553 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~ 626 (788)
.++.|...|+... ..+..++..+...|...|++++|++.|++.++....|... .+..+.. ...+.|+.++|+..
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567777776543 3455678899999999999999999999988864333221 2233332 24578999999999
Q ss_pred HHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 627 FVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 627 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
|++++ .+.|+........ ..+..++++. . .+.++.+|..++.+|...|++++|+..|+++++++|.
T Consensus 395 y~kal---~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 395 FIEGV---KINQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHH---HSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHH---hcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99887 4566643322222 2233333333 1 2345678999999999999999999999999999999
Q ss_pred CCchHHHHH
Q 035503 705 NPGNYVALS 713 (788)
Q Consensus 705 ~~~~~~~l~ 713 (788)
+|.+..-+|
T Consensus 463 ~p~a~~~~G 471 (472)
T 4g1t_A 463 IPSASSWNG 471 (472)
T ss_dssp ---------
T ss_pred CCcHhhcCC
Confidence 888776655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=155.61 Aligned_cols=228 Identities=14% Similarity=0.057 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 035503 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISG 477 (788)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 477 (788)
...+......+...|++++|..+|+++.... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3446666777778888888888888877763 3456677777788888888888888888876552 3356777788888
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCHH-HHHHH--------------HH-HhhccCchHHHHHHHHHHHHcCCCCChhHH
Q 035503 478 LTQNSCGNEAILFFQEMLETGIKPSTT-TITCA--------------LS-ACTDVASLRNGRAIHGYLIRHDLCLPTPIV 541 (788)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 541 (788)
+...|++++|...++++.+. .|+.. .+..+ .. .+...|++++|...++.+.+..+ .+...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 88888888888888888764 33322 22222 11 26667778888888888777766 456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC
Q 035503 542 TSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG 618 (788)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 618 (788)
..++..|...|++++|...++.+.. .+..+|..++..+...|++++|+..|+++.+.. +.+...+..+..++...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 6666666666666666666654432 334456666666666666666666666655542 223455555555566666
Q ss_pred cHHHHHHHHHhcH
Q 035503 619 LVNEGLELFVGMF 631 (788)
Q Consensus 619 ~~~~A~~~~~~~~ 631 (788)
++++|.+.++++.
T Consensus 255 ~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 255 QYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-16 Score=146.76 Aligned_cols=193 Identities=14% Similarity=0.061 Sum_probs=152.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
++...+..++..+.+.|++++|+..|+...+ .+...|..+..++...|++++|+..|++.++.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 5566777888888888888888888886544 455678888889999999999999999988864 335677788888
Q ss_pred Hhhcc-----------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 035503 613 ACSHA-----------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLL 679 (788)
Q Consensus 613 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 679 (788)
++... |++++|+..|+++++ +.|+ ...+..++.+|...|++++|++.++++ ....+...+..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 88888 999999999999874 3565 677889999999999999999999887 2126788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
.++...|++++|+..++++++.+|+++.++..++.++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.4e-15 Score=144.09 Aligned_cols=214 Identities=9% Similarity=0.024 Sum_probs=156.5
Q ss_pred HHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CC----hhhHHHHHHH
Q 035503 509 ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS------KE----LPVYNAMISG 578 (788)
Q Consensus 509 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~~l~~~ 578 (788)
+...+...|++++|...++.+++.. .+..++..++.+|...|++++|+..++.... ++ ..+|..++.+
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 3333444444444444444444433 3344445555555555555555555543332 11 3567778888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChH
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLD 657 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 657 (788)
+...|++++|+..|+++... .|+. ..+...|++++|...++++.. ..|+ ...+..++..+...|+++
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHH
Confidence 88888888898888888874 4553 335567889999999998864 3444 567778999999999999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 658 EALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 658 ~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
+|.+.++++ . .+.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999887 2 33457789999999999999999999999999999999999999999999999999999999998775
Q ss_pred C
Q 035503 736 G 736 (788)
Q Consensus 736 ~ 736 (788)
.
T Consensus 237 ~ 237 (258)
T 3uq3_A 237 D 237 (258)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-15 Score=159.02 Aligned_cols=377 Identities=9% Similarity=-0.021 Sum_probs=255.1
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCh---HHHHHHHHhcccCChhH
Q 035503 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI---DNAKQVFNSIILRDVVL 400 (788)
Q Consensus 324 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~ 400 (788)
+...+.+.|++++|.+.|++..+.+ ++..+..|..+|...|+. ++|...|++....++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-----------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A 71 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-----------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRA 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----------------CCTGGGTCC----------------------------C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHH
Confidence 5667788899999999998864322 223445566667777777 89999999887667777
Q ss_pred HHHHHHHHHHcC-----ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCChhhHH
Q 035503 401 WNTLLAAYADLG-----RSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNE---AKDMFLQMQSLGVQPNLITWT 472 (788)
Q Consensus 401 ~~~l~~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~ 472 (788)
+..+...+...+ ++++|+..|++....|.. ..+..|...|...+..++ +...+......| +...+.
T Consensus 72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~ 145 (452)
T 3e4b_A 72 QARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGL 145 (452)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHH
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHH
Confidence 778877666655 678999999999987632 366677777777665443 455555554444 566777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA---SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (788)
.+...|...+.++++......+.+.-...++..+..+...+...| +.++|...++...+.++ ++...+..++.+|.
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 888888888866655554333332212233337777888888888 99999999999999998 66666678888886
Q ss_pred Hc----CCHHHHHHHHhhCCCCChhhHHHHHHH-H--HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC----
Q 035503 550 KC----GNIHQAKRVFDISPSKELPVYNAMISG-Y--AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG---- 618 (788)
Q Consensus 550 ~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---- 618 (788)
.. +++++|...|+.....++.++..|... + ...+++++|+++|++..+.| +...+..|...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 65 799999999987665566788888887 4 46899999999999998876 5666667777666 55
Q ss_pred -cHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 035503 619 -LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETE 689 (788)
Q Consensus 619 -~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 689 (788)
++++|+.+|++.. .-++.....|+.+|.. ..+.++|..+|++.....+......++..|.. .+|.+
T Consensus 301 ~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp CCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHH
T ss_pred CCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHH
Confidence 9999999998774 3457777888888876 44999999999998544455667777777763 46999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHH--HhCCCcHHHHHHHHHHHHC
Q 035503 690 LAEYISEHLLQLEPDNPGNYVALSNAY--AASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 735 (788)
+|...++++.+..+. .....+..+. ...++..+|..+.++....
T Consensus 376 ~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 376 NAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999987654 3444444443 3345667888888776554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-14 Score=138.15 Aligned_cols=257 Identities=9% Similarity=-0.042 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC--HHHHHHHHHHh
Q 035503 436 WNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS--TTTITCALSAC 513 (788)
Q Consensus 436 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~ 513 (788)
+......+...|++++|+..|+++.+.. +.+...|..+..++...|++++|+..+++..+....|+ ...+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445556666667777777776665542 22344666666677777777777777777666321111 12355666666
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHH
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALA 590 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 590 (788)
...|++++|...++.+.+..+ .+..++..++.+|...|++++|+..|++... .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777666665 4556777777777777888877777776654 334456666623334457777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHhhccCc---HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 035503 591 LFKNLQQKGIDPDSITFTNILNACSHAGL---VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP 667 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 667 (788)
.|+++.+.. +.+...+..+..++...|+ +++|...|+++.+...-.|+.. -.
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~----------------------- 218 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD----------------------- 218 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH-----------------------
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH-----------------------
Confidence 777766642 2234455555555555555 5555555555543211111110 00
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 668 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
....++..++..|...|++++|+..++++++++|+++.++..+..+....+.
T Consensus 219 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 219 --ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 0124677788889999999999999999999999999888888777655543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-15 Score=145.74 Aligned_cols=238 Identities=8% Similarity=-0.052 Sum_probs=151.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC--CCC----HHHH
Q 035503 433 IISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI--KPS----TTTI 506 (788)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~ 506 (788)
...+..+...+...|++++|...|+++.+.. .+...|..+..++...|++++|...+++..+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776554 5667777777777777777777777777665210 111 2344
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHH
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAV 586 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 586 (788)
..+...+...|++++|...++.+.+..+. ...+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------------~~~~~~~~~~~ 122 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------------------------ADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch----------------------------------------hHHHHHHhHHH
Confidence 44444444555555555555554443331 12344456666
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 587 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
+|+..++++.... +.+...+..+...+...|++++|+..|+++.... +.+...+..++.+|.+.|++++|...++++
T Consensus 123 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 123 KELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666666666532 1234455566666777777777777777765431 223556667777777777777777777766
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 035503 667 -P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE------PDNPGNYVALSNA 715 (788)
Q Consensus 667 -~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 715 (788)
. .+.+...|..++..+...|++++|...++++++++ |++..++..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 2 23346678888888999999999999999999988 8777776666543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=152.31 Aligned_cols=346 Identities=9% Similarity=-0.048 Sum_probs=241.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHhccc-CChhHHHHHHHHHHHcCCh---hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 035503 371 SSIVDMYAKCERIDNAKQVFNSIIL-RDVVLWNTLLAAYADLGRS---GEASRLFYQMQLEGISPNIISWNSVILGFLRN 446 (788)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 446 (788)
..+...+.+.|++++|..+|++... .++..+..+...+...|+. ++|+..|++..+. +...+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 3477888899999999999988764 3566777777888888888 8999999998854 555566666655555
Q ss_pred C-----CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCch---HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 035503 447 G-----QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGN---EAILFFQEMLETGIKPSTTTITCALSACTDVAS 518 (788)
Q Consensus 447 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 518 (788)
+ ++++|...|++..+.| +...+..|...|...+..+ ++.+.+......| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 7889999999998776 3447788888888776544 4555555555443 34455666677777775
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC---CHHHHHHHHhhCCC---CChhhHHHHHHHHHhC----CCHHHH
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG---NIHQAKRVFDISPS---KELPVYNAMISGYAMH----GLAVEA 588 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----g~~~~A 588 (788)
++++........+.-...++..+..|+.+|...| +.++|++.|+...+ .+...+..|...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 5555544443333322344458999999999999 99999999986654 3334446777777554 799999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHH-h--hccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcC-----ChHHHH
Q 035503 589 LALFKNLQQKGIDPDSITFTNILNA-C--SHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG-----NLDEAL 660 (788)
Q Consensus 589 ~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 660 (788)
+++|++.. .| +...+..+... + ...+++++|+.+|++..+. + +...+..|+.+|. .| +.++|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 99999976 33 45556666665 3 5689999999999998643 3 6777888888887 55 999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCCcHHHHHHHHHH
Q 035503 661 RVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYVALSNAYAA----SGRWNEVSQVRDIM 732 (788)
Q Consensus 661 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 732 (788)
++|+++. ..++..+..++..|.. ..|+++|...++++.+ +.++..+..|+.+|.. ..+.++|...+++.
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999998 7778888889888876 4599999999999987 5678899999999986 56899999999999
Q ss_pred HHCCCc
Q 035503 733 KEKGLR 738 (788)
Q Consensus 733 ~~~~~~ 738 (788)
.+.|..
T Consensus 385 ~~~g~~ 390 (452)
T 3e4b_A 385 KAQDTP 390 (452)
T ss_dssp HTTCCH
T ss_pred HHCCCH
Confidence 988853
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.8e-16 Score=169.40 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH---cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHH
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQL---EGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLI 475 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 475 (788)
.+||++|++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5799999999999999999999987763 4788999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCc-hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 035503 476 SGLTQNSCG-NEAILFFQEMLETGIKPSTTTITCALSACTDV 516 (788)
Q Consensus 476 ~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (788)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 999998875 68889999999999999999998877655443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=143.48 Aligned_cols=241 Identities=9% Similarity=-0.087 Sum_probs=176.2
Q ss_pred hCCCchHHHHHHHHHHhCCC--C-CCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHH
Q 035503 480 QNSCGNEAILFFQEMLETGI--K-PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQ 556 (788)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~--~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (788)
..|++++|+..|+++.+... . .+..++..+...+...|++++|...++.+++..+ .+...+..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 34666777777777766421 1 1234566666667777777777777777777766 566777778888888888888
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhh
Q 035503 557 AKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSD 633 (788)
Q Consensus 557 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 633 (788)
|+..|+.+.. .+..+|..++.+|...|++++|+..|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888876543 45677888889999999999999999998875 455544444555567779999999999887654
Q ss_pred cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 634 HQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP-CDPD-----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 634 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.|+......++..+...++.++|.+.+.++- ..|+ ...+..++..+...|++++|+..++++++.+|++..
T Consensus 174 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 ---SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp ---SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred ---CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2333333457777888888899999988873 2232 467889999999999999999999999999998755
Q ss_pred hHHHHHHHHHhCCCcHHHHHHH
Q 035503 708 NYVALSNAYAASGRWNEVSQVR 729 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~ 729 (788)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 67888999999998876
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-14 Score=147.13 Aligned_cols=244 Identities=10% Similarity=0.058 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCc-hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 035503 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKP-STTTITCALSACTDVAS-LRNGRAIHGYLIRHDLCLPTPIVTSLVD 546 (788)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 546 (788)
..|..+...+...|++++|+..+++++.. .| +...|..+..++...|+ +++|...++++++.++ .+..+|..++.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 34555555666666666666666666653 33 34455555566666664 6666666666666666 56666667777
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc-cCcHHH
Q 035503 547 MYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH-AGLVNE 622 (788)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~ 622 (788)
++...|++++|+..|+++.. .+..+|..+..++...|++++|+..|+++++.. +-+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777777777777765543 455677777778888888888888888887764 2356777777777777 555466
Q ss_pred H-----HHHHHhcHhhcCCCCC-cchHHHHHHHHhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-------
Q 035503 623 G-----LELFVGMFSDHQVKPS-MEHFGCVVNLLSRCG--NLDEALRVILTMPCDPD-AHIIGSLLSTCVKSN------- 686 (788)
Q Consensus 623 A-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g------- 686 (788)
| +..|++++. +.|+ ...|..++.+|.+.| +.++|++.+.++...|+ ...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777764 3455 567778888888877 58888888887744444 457778888887763
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhC
Q 035503 687 -E-TELAEYISEHL-LQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 687 -~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 719 (788)
+ .++|+.+++++ ++++|.....|..++..+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999999888876654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-14 Score=138.23 Aligned_cols=226 Identities=8% Similarity=-0.061 Sum_probs=167.0
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHH
Q 035503 507 TCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KEL----PVYNAMISGYA 580 (788)
Q Consensus 507 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~ 580 (788)
......+...|++++|...++.+++..+ .+...+..++.+|...|++++|+..++.... .+. .+|..++..+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344455556666666666666665555 4455666677777777777777777765443 222 24778888888
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHH
Q 035503 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 581 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 659 (788)
..|++++|++.|++..+.. +.+...+..+...+...|++++|+..|++++ .+.|+ ...+..++..+...+++++|
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888764 3356778888888999999999999998886 34554 56666777344445699999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhCCCcHHHH
Q 035503 660 LRVILTM-PCDP-DAHIIGSLLSTCVKSNE---TELAEYISEHLLQLE---PDN-----PGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 660 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~ 726 (788)
.+.++++ ...| +...+..++.++...|+ +++|+..++++++.. |+. ..+|..++.+|...|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998887 2333 46678888888888888 888999999999876 442 258889999999999999999
Q ss_pred HHHHHHHHCCC
Q 035503 727 QVRDIMKEKGL 737 (788)
Q Consensus 727 ~~~~~~~~~~~ 737 (788)
..++++.+..+
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 99999988764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-13 Score=134.16 Aligned_cols=215 Identities=9% Similarity=-0.053 Sum_probs=138.9
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISGYAM---- 581 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---- 581 (788)
..+...|++++|...++++.+. .+...+..++..|.. .+++++|...|++..+ .+..++..+...|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCc
Confidence 3333334444444444443331 223344445555555 5555555555554332 244556666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc----cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----c
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSH----AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----C 653 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 653 (788)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|+.+|++..+. + +...+..++..|.. .
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCC
Confidence 677777777777766653 55566666666666 77777777777776542 2 44556666777766 7
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCCcHHH
Q 035503 654 GNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYVALSNAYAA----SGRWNEV 725 (788)
Q Consensus 654 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 725 (788)
+++++|.++++++....+...+..++..|.. .+++++|+..++++++.+| +..+..++.+|.. .+++++|
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 7777777777776323455677778888877 8888888888888888765 6778888888888 8888888
Q ss_pred HHHHHHHHHCCC
Q 035503 726 SQVRDIMKEKGL 737 (788)
Q Consensus 726 ~~~~~~~~~~~~ 737 (788)
...+++..+.+.
T Consensus 242 ~~~~~~a~~~~~ 253 (273)
T 1ouv_A 242 IENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 888888887764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-14 Score=132.34 Aligned_cols=194 Identities=14% Similarity=0.057 Sum_probs=99.4
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 466 PNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 466 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++...|++++|...++++++..| .+...+..++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 344455555555555555555555555555431 22334445555555555555555555555555555 4455555555
Q ss_pred HHHHHc-----------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 546 DMYAKC-----------GNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 546 ~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
.++... |++++|+..|++..+ .+...|..+..++...|++++|+..|++.++.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 555555 555555555554332 233455556666666666666666666666554 4555555666
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
.++...|++++|+..|+++++. .|+ ...+..++.++.+.|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666532 233 444555666666666666666655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=134.32 Aligned_cols=195 Identities=10% Similarity=-0.043 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
.+..++..+...|++++|...|+.+.. .+..+|..++..+...|++++|++.++++.+.. +.+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 344455555555555555555543321 234456666666667777777777777766643 2345566666667777
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEY 693 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 693 (788)
.|++++|+++++++.. .+..|+ ...+..++..|.+.|++++|.+.++++ . .+.+...+..++..+...|++++|+.
T Consensus 118 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777654 123443 455567777777777777777777766 2 22345677777888888888888888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 694 ISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 694 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++++++..|+++..+..++.+|...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888888888888888888888888888888888877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-14 Score=145.32 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=195.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC-HHHHHHHHhhCCC---CChhhHHHHHHHH
Q 035503 504 TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN-IHQAKRVFDISPS---KELPVYNAMISGY 579 (788)
Q Consensus 504 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 579 (788)
..+..+...+...|++++|...++++++..| .+..+|..++.++...|+ +++|+..|+++.. .+..+|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566777778889999999999999999998 788999999999999997 9999999997754 5667999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhh-cCChH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSR-CGNLD 657 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~ 657 (788)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++ +.|+ ...|..++.+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999864 34678899999999999999999999999985 3455 6788899999999 66667
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC--------
Q 035503 658 EA-----LRVILTM-PCDP-DAHIIGSLLSTCVKSN--ETELAEYISEHLLQLEPDNPGNYVALSNAYAASG-------- 720 (788)
Q Consensus 658 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 720 (788)
+| ++.++++ ...| +...|..++.++...| ++++|+..++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 3344 4678999999998888 689999999998 999999999999999999975
Q ss_pred -CcHHHHHHHHHH-HHCC
Q 035503 721 -RWNEVSQVRDIM-KEKG 736 (788)
Q Consensus 721 -~~~~A~~~~~~~-~~~~ 736 (788)
..++|..+++++ .+..
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 258999999998 5544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-15 Score=160.41 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=120.4
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhcc-------cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 035503 368 VVASSIVDMYAKCERIDNAKQVFNSII-------LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVI 440 (788)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 440 (788)
.+|++++++|++.|++++|.++|+.|. .||+++||++|.+|++.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 378999999999999999999997753 6899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCH-HHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC------HHHHHHHHHHh
Q 035503 441 LGFLRNGQM-NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPS------TTTITCALSAC 513 (788)
Q Consensus 441 ~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~ 513 (788)
.++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+. ..++..+++ ..++.|+ ..+...+.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHH
Confidence 999999984 78999999999999999999999998766653 455555555 3345554 33344455555
Q ss_pred hccC
Q 035503 514 TDVA 517 (788)
Q Consensus 514 ~~~~ 517 (788)
...+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-14 Score=137.11 Aligned_cols=144 Identities=16% Similarity=0.051 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
.++..++..+...|++++|++.++++.+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..++..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 344444455555555555555555554432 2234444445555555555555555555554321 1223344455555
Q ss_pred HhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 650 LSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
+.+.|++++|.+.++++ . .+.+...+..++..+...|++++|+..++++++.+|+++.++..++.+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 55555555555555444 1 1223445555555555555555565556665555555555555544443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-13 Score=131.35 Aligned_cols=224 Identities=10% Similarity=-0.057 Sum_probs=147.1
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 035503 469 ITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD----VASLRNGRAIHGYLIRHDLCLPTPIVTSL 544 (788)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 544 (788)
..+..+...+...|++++|+..|++..+ +.+...+..+...+.. .+++++|...++++.+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 3344444444444444445444444444 1122333344444444 455555555555554443 34455556
Q ss_pred HHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh
Q 035503 545 VDMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISGYAM----HGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615 (788)
Q Consensus 545 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 615 (788)
+.+|.. .+++++|+..|++..+ .+..++..+...|.. .+++++|+.+|++..+.+ +...+..+...|.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 666666 6666666666654433 345567777777777 788888888888877754 4556666666777
Q ss_pred c----cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 035503 616 H----AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDEALRVILTMPCDPDAHIIGSLLSTCVK--- 684 (788)
Q Consensus 616 ~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~--- 684 (788)
. .+++++|+.+|++..+. .+...+..++.+|.. .+++++|+++++++....+...+..++..|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 6 78888888888887643 245667788888888 88899998888887322346778888888888
Q ss_pred -cCCHHHHHHHHHHHHhcCCCC
Q 035503 685 -SNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 685 -~g~~~~A~~~~~~~~~~~p~~ 705 (788)
.+++++|+..++++++.+|++
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCHH
T ss_pred cccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999998874
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-14 Score=135.79 Aligned_cols=199 Identities=10% Similarity=0.056 Sum_probs=155.0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
.....+..++..+...|++++|...|+.+.. .+...+..++..+...|++++|+..++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4455677778888888888888888876643 455678889999999999999999999988864 346778888888
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~ 690 (788)
.+...|++++|+..++++.+.. +.+...+..++..+.+.|++++|...++++ . .+.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999997542 335677889999999999999999999987 2 33467789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 691 AEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
|+..++++++..|+++.++..++.+|...|++++|...++++.+..+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999988653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=129.09 Aligned_cols=197 Identities=11% Similarity=-0.022 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHh
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 614 (788)
...+..++..+...|++++|.+.|+.+.. .+...|..++.++...|++++|++.++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555666666666666666666654432 344567777777777788888888887777653 33566677777777
Q ss_pred hcc-CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 035503 615 SHA-GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 615 ~~~-g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 690 (788)
... |++++|+..++++.. .+..|+ ...+..++..+...|++++|++.++++ .. +.+...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 788 888888888887765 223343 456667788888888888888888776 22 2346678888888888888888
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 691 AEYISEHLLQLEP-DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 691 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 8888888888888 888888888888888888888888888876654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=145.87 Aligned_cols=296 Identities=11% Similarity=0.033 Sum_probs=196.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHhC----CCCC
Q 035503 430 SPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN----LITWTTLISGLTQNSCGNEAILFFQEMLET----GIKP 501 (788)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p 501 (788)
......+......+...|++++|...|+++.+.+. .+ ...|..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34555667778888999999999999999876532 23 356778888999999999999999987642 1122
Q ss_pred C-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC-C----ChhHHHHHHHHHHHcCC--------------------HH
Q 035503 502 S-TTTITCALSACTDVASLRNGRAIHGYLIRHDLC-L----PTPIVTSLVDMYAKCGN--------------------IH 555 (788)
Q Consensus 502 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~ 555 (788)
. ..++..+...+...|++++|...+..+++..+. . ...++..++..|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2 345666777788888888888888887764321 1 13367777888888888 77
Q ss_pred HHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHhhccCcHH
Q 035503 556 QAKRVFDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPD----SITFTNILNACSHAGLVN 621 (788)
Q Consensus 556 ~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~ 621 (788)
+|...++.... .+ ..++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 77777764322 11 13566777777778888888888777665310 112 125666666777778888
Q ss_pred HHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHH
Q 035503 622 EGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDPD----AHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~ 689 (788)
+|..+++++.....-.++ ..++..++..|...|++++|.+.++++. ..++ ..++..++..+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888877776543211122 3455577777777777777777776651 1112 345666777777777777
Q ss_pred HHHHHHHHHHhcCCCCC------chHHHHHHHHHhCCCcHHHH
Q 035503 690 LAEYISEHLLQLEPDNP------GNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~ 726 (788)
+|+..+++++++.+... .++..++.+|...|+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 77777777777777763 24555666666666655433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=125.05 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHH
Q 035503 568 ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCV 646 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 646 (788)
+...|..++..|...|++++|++.|++.++.. +-+...+..+..++.+.|++++|+..++.+... .|+ ...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 34567778888888888888888888877753 235667777778888888888888888887643 343 5566677
Q ss_pred HHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHH
Q 035503 647 VNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
+..+...+++++|.+.+.++ . .+.+...+..++..+...|++++|+..++++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888888888888888777 2 334567888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 035503 725 VSQVRDIMKEKGL 737 (788)
Q Consensus 725 A~~~~~~~~~~~~ 737 (788)
|...+++.++..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999988654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-14 Score=149.42 Aligned_cols=271 Identities=11% Similarity=0.005 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh----hhHHHHHHHHHhCCCchHHHHHHHHHHhC----CCCC-CHH
Q 035503 434 ISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNL----ITWTTLISGLTQNSCGNEAILFFQEMLET----GIKP-STT 504 (788)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~ 504 (788)
..+..+...+...|++++|+..|+++.+.+.. +. ..|..+...|...|++++|...+++..+. +..| ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455666777888888888888887665221 22 35677777778888888888888776642 1011 123
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 035503 505 TITCALSACTDVASLRNGRAIHGYLIRHDL-----CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGY 579 (788)
Q Consensus 505 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 579 (788)
.+..+...+...|++++|...+.++++... .... .++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG-------------------------------RALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH-------------------------------HHHHHHHHHH
Confidence 444444555555555555555555444210 0112 2344555555
Q ss_pred HhCCC-----------------HHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCC
Q 035503 580 AMHGL-----------------AVEALALFKNLQQK----GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637 (788)
Q Consensus 580 ~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 637 (788)
...|+ +++|++.+++..+. +..+ ....+..+...+...|++++|+.+++++.+...-.
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555555554331 1111 12345556666777777777777777665432111
Q ss_pred CC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 638 PS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDP----DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 638 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
++ ...+..++.+|...|++++|.+.++++. ... ...++..++..+...|++++|+..++++++..++.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 1255677777777788887777776651 111 13567778888888889999988888888875543
Q ss_pred ------CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 706 ------PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 706 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..++..++.+|...|++++|..++++..+..
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3478888999999999999998888876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.4e-13 Score=129.72 Aligned_cols=201 Identities=11% Similarity=-0.035 Sum_probs=127.5
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 035503 508 CALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGL 584 (788)
Q Consensus 508 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 584 (788)
.+...+...|++++|...++.+++..+ .+...+..++..|...|++++|.+.|+.+.. .+...|..++..|...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH
Confidence 333334444444444444444444433 3344455555555555555555555554322 234456666666777777
Q ss_pred HHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 035503 585 AVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI 663 (788)
Q Consensus 585 ~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (788)
+++|+++++++...+..| +...+..+...+...|++++|..+++++.+.. +.+...+..++..|.+.|++++|...+
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777765522334 34556666667777777777777777776431 223566667778888888888888888
Q ss_pred HhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 664 LTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 664 ~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
+++ .. +.+...+..++..+...|++++|...++++++..|+++.....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 199 DLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 776 22 3455677788888889999999999999999999997766543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=140.78 Aligned_cols=271 Identities=13% Similarity=0.042 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHhC----CCCCC-HHH
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPN----LITWTTLISGLTQNSCGNEAILFFQEMLET----GIKPS-TTT 505 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~ 505 (788)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +..|. ...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556677778888888888777554211 2 245666777777777777777777776542 10111 223
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC----hhhHHHHHHHHHh
Q 035503 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE----LPVYNAMISGYAM 581 (788)
Q Consensus 506 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~ 581 (788)
+..+...+...|++++|...+.++.+..+.. .+ ..++..+...+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISREL------------------------------NDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh------------------------------cCchHHHHHHHHHHHHHHH
Confidence 3334444444445554444444443321100 11 1245555566666
Q ss_pred CCC--------------------HHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC
Q 035503 582 HGL--------------------AVEALALFKNLQQK----GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636 (788)
Q Consensus 582 ~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 636 (788)
.|+ +++|++.+++.... +..+ ....+..+...+...|++++|...++++.+...-
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 66666666654431 1111 1235666666777888888888888877543211
Q ss_pred CCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 637 KPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 637 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.++ ...+..++..+...|++++|.+.++++. ..++ ..++..++..+...|++++|+..++++++..|.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 122 2356678888888889888888887761 1122 456778888899999999999999999987665
Q ss_pred C------CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 705 N------PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 705 ~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
. ..++..++.+|.+.|++++|..+++++.+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3 4478899999999999999999999988754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-14 Score=148.43 Aligned_cols=292 Identities=11% Similarity=0.002 Sum_probs=210.6
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-C
Q 035503 397 DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN----IISWNSVILGFLRNGQMNEAKDMFLQMQSL----GVQP-N 467 (788)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~~~-~ 467 (788)
....+......+...|++++|+..|+++..... .+ ..++..+...+...|++++|...|++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 445667778889999999999999999988732 22 356778888899999999999999986332 2111 2
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCc--------------------hHHH
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLETGI-KPS----TTTITCALSACTDVAS--------------------LRNG 522 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a 522 (788)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677888899999999999999998876311 112 2367777788888999 9999
Q ss_pred HHHHHHHHHcC-----CCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CCh----hhHHHHHHHHHhCCCHHHH
Q 035503 523 RAIHGYLIRHD-----LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-----KEL----PVYNAMISGYAMHGLAVEA 588 (788)
Q Consensus 523 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~g~~~~A 588 (788)
...+..+++.. ......++..++..|...|++++|...++.... ++. .++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99988876631 112244678889999999999999999876543 221 2678889999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHH
Q 035503 589 LALFKNLQQKGID-PD----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 589 ~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 659 (788)
+..+++....... ++ ..++..+...+...|++++|..+++++.....-.++ ...+..++..|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987653211 11 456777788899999999999999988654222222 45667888999999999999
Q ss_pred HHHHHhCC-----C--C-CCHHHHHHHHHHHHhcCCHH
Q 035503 660 LRVILTMP-----C--D-PDAHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 660 ~~~~~~~~-----~--~-p~~~~~~~l~~~~~~~g~~~ 689 (788)
.+.++++- . . ....++..++..+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99988761 1 1 11234555555555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=129.04 Aligned_cols=240 Identities=12% Similarity=-0.001 Sum_probs=172.7
Q ss_pred hhcCChHHHHHHHHhcccC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 035503 378 AKCERIDNAKQVFNSIILR-------DVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMN 450 (788)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 450 (788)
...|++++|+..|+.+... +..+|..+...+...|++++|...|+++.... +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457889999999887642 35568888889999999999999999998874 346788888999999999999
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 035503 451 EAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLI 530 (788)
Q Consensus 451 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 530 (788)
+|...|+++.+.. +.+...|..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...+..+.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999987652 335788888999999999999999999999873 4555555555555667788899999888888
Q ss_pred HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 035503 531 RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKE-------LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPD 603 (788)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 603 (788)
...+ ++...+ .++..+...++.++|...++.....+ ..+|..++.+|...|++++|+..|+++.+. .|+
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 7765 333333 36666777777788888887666532 245667777777777777777777777664 342
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHH
Q 035503 604 SITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 604 ~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.. .....++...|++++|++.+
T Consensus 248 ~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TC--HHHHHHHHHHHHHHHC----
T ss_pred hH--HHHHHHHHHHHHHHhhHHHH
Confidence 21 12233455666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-12 Score=124.14 Aligned_cols=203 Identities=13% Similarity=-0.003 Sum_probs=137.3
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC
Q 035503 506 ITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMH 582 (788)
Q Consensus 506 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 582 (788)
+..+...+...|++++|...++.+++..+ .+...+..++..|...|++++|...++.+.. .+..+|..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 33344444444444444444444444443 3344555556666666666666666654432 3445677777777888
Q ss_pred -CCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHH
Q 035503 583 -GLAVEALALFKNLQQKGIDPD-SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 583 -g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 659 (788)
|++++|+..++++.+.+..|+ ...+..+..++...|++++|+..++++.+. .|+ ...+..++..+.+.|++++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHH
Confidence 888888888888776322333 456677777788888888888888887653 243 66677888888888888888
Q ss_pred HHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 660 LRVILTM-PC-D-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 660 ~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
.+.++++ .. + .+...+..+...+...|+.+.|...++.+.+.+|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888877 22 2 3556677777778889999999999999999999987776554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.6e-14 Score=148.98 Aligned_cols=190 Identities=9% Similarity=-0.020 Sum_probs=145.8
Q ss_pred CChhHHHHHHHHHHHcCCH-HHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNI-HQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNIL 611 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 611 (788)
.+...+..++..|...|++ ++|++.|++..+ .+..+|..+..+|...|++++|++.|++.++. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3444555555555555555 555555554322 33456777777777778888888888887764 46667777777
Q ss_pred HHhhcc---------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhc--------CChHHHHHHHHhC-CCCC--
Q 035503 612 NACSHA---------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRC--------GNLDEALRVILTM-PCDP-- 670 (788)
Q Consensus 612 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p-- 670 (788)
.++... |++++|+..|+++++. .|+ ...+..++.+|... |++++|++.|+++ ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 778888 8888888888888743 344 66777888888888 8899999888887 3344
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHH
Q 035503 671 --DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 671 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 730 (788)
+...|..++.+|...|++++|+..++++++++|+++.++..++.++...|++++|...++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677899999999999999999999999999999999999999999999999999997543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-10 Score=126.43 Aligned_cols=424 Identities=10% Similarity=0.034 Sum_probs=264.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hhHHHH
Q 035503 263 LNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGL---LEDAEV 339 (788)
Q Consensus 263 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 339 (788)
...+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ .+.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455565666666554 468889999999988888999999999998877 46677788888888888888 899999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCh--------HHHHHHHHhcc------cC-ChhHHHHH
Q 035503 340 VFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERI--------DNAKQVFNSII------LR-DVVLWNTL 404 (788)
Q Consensus 340 ~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~------~~-~~~~~~~l 404 (788)
+|++.....+. .++..++...+....+.++. +...++|+... .+ +...|...
T Consensus 125 lfeRal~~~~~-------------~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 125 VLARCLSKELG-------------NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp HHHHHTCSSSC-------------CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred HHHHHHHhcCC-------------CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 99988765421 25666777766665555443 23345666532 22 34567777
Q ss_pred HHHHH---------HcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-------------CHHHHHHHHHHhh--
Q 035503 405 LAAYA---------DLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNG-------------QMNEAKDMFLQMQ-- 460 (788)
Q Consensus 405 ~~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-------------~~~~A~~~~~~~~-- 460 (788)
+.... ..++.+.+..+|++++......-..+|.....--...+ +++.|...+..+.
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 76543 23456777888888775322222233333222211111 1223444444431
Q ss_pred hCCCC---CC--------------------hhhHHHHHHHHHhCC-------CchHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035503 461 SLGVQ---PN--------------------LITWTTLISGLTQNS-------CGNEAILFFQEMLETGIKPSTTTITCAL 510 (788)
Q Consensus 461 ~~g~~---~~--------------------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (788)
..++. |. ...|...+.---..+ ..+.+..+|++.+.. .+-....|...+
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya 350 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMA 350 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHH
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 12331 11 123444444333322 123345667777664 344566777777
Q ss_pred HHhhccCchHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------------CC--------
Q 035503 511 SACTDVASLRNGR-AIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------------KE-------- 568 (788)
Q Consensus 511 ~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~-------- 568 (788)
.-+...|+.+.|. .+++.++...| .+..++..++....+.|+++.|.++|+.+.. |.
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 7777778888886 88888887665 5666777788888888888888888876543 21
Q ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHhhc-cCcHHHHHHHHHhcHhhcCCCCCcch
Q 035503 569 ----LPVYNAMISGYAMHGLAVEALALFKNLQQK-GIDPDSITFTNILNACSH-AGLVNEGLELFVGMFSDHQVKPSMEH 642 (788)
Q Consensus 569 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~ 642 (788)
...|...+....+.|..+.|..+|.+.++. + ......|...+..-.+ .++.+.|..+|+..++.++ -+...
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~ 506 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHH
Confidence 125777777777788888888888887765 2 1122333322222222 3457888888888876532 23344
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTMP-CDP----DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
+...++.....|+.+.|..+|+++- ..| ....|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 4577777777888888888888762 223 234677777777788888888888888888888864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.6e-13 Score=140.32 Aligned_cols=277 Identities=12% Similarity=-0.001 Sum_probs=189.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCChh
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI----ISWNSVILGFLRNGQMNEAKDMFLQMQSL----GV-QPNLI 469 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~ 469 (788)
..+..+...+...|++++|+..|+++++.... +. ..+..+...|...|++++|...|++..+. +. +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34566778899999999999999999987322 22 47888899999999999999999998442 11 12356
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCC----CCC-CHHHHHHHHHHhhccCc-----------------hHHHHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETG----IKP-STTTITCALSACTDVAS-----------------LRNGRAIHG 527 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~ 527 (788)
.+..+...|...|++++|...+++..... -.| ...++..+...+...|+ +++|...+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78888999999999999999999987631 112 23456667777778888 666666665
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC-
Q 035503 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPD- 603 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~- 603 (788)
++.+. ...... ....++..+...|...|++++|+..+++..+... .++
T Consensus 208 ~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 208 ENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 54432 111111 0112455566666666666666666666554210 011
Q ss_pred ---HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC-
Q 035503 604 ---SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDPD- 671 (788)
Q Consensus 604 ---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~- 671 (788)
...+..+...+...|++++|+..++++.....-..+ ...+..++.+|...|++++|.++++++. ..++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 125566666777777777777777776543211111 3455677888888888888888887761 1111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 672 ---AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 672 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..++..++..|...|++++|...+++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346778888899999999999999999988766
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.6e-13 Score=146.17 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=138.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 569 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
..+|+.|..+|.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|+..|+++++ +.|+ ...|..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3568888888889999999999999888753 23567788888889999999999999998874 4565 67888999
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHH
Q 035503 648 NLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 725 (788)
.+|.+.|++++|++.|+++ ...| +...|..++.++...|++++|+..|+++++++|+++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999887 3344 4678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 035503 726 SQVRDIMKE 734 (788)
Q Consensus 726 ~~~~~~~~~ 734 (788)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.4e-10 Score=121.43 Aligned_cols=403 Identities=10% Similarity=0.050 Sum_probs=251.6
Q ss_pred CcchHHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC---hhHHHHHHHHHHHhCC-CCchhHHH
Q 035503 247 NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDA---LDEGKQAHAVAVINGM-ELDNVLGS 322 (788)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~~ 322 (788)
|...|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|+..+.... .|+...|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6778888888888888899999999998876 45566667777777777777 8888888888887652 47788888
Q ss_pred HHHHHHHhcCCh----hHHHHHHHhcCCCCchhHHHHHHHHHHcCC---CchhHHHHHHHHHhh---------cCChHHH
Q 035503 323 SIINFYSKVGLL----EDAEVVFSRMVERDIVTWNLLIASYVQSGQ---SDVVVASSIVDMYAK---------CERIDNA 386 (788)
Q Consensus 323 ~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~~~~~~l~~~~~~---------~~~~~~A 386 (788)
..+....+.++. +++.....+ .|. .+....|. .+..++...+..... .++++.+
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~-------~FE---rAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQ-------AFQ---VVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHH-------HHH---HHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHH-------HHH---HHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 887777766665 333333222 122 22222232 234567666665432 3456778
Q ss_pred HHHHHhccc-C--C-hhHHHHHHHHHHHcCC-------------hhHHHHHHHHHHHc--CCC---Cc------------
Q 035503 387 KQVFNSIIL-R--D-VVLWNTLLAAYADLGR-------------SGEASRLFYQMQLE--GIS---PN------------ 432 (788)
Q Consensus 387 ~~~~~~~~~-~--~-~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~--~~~---~~------------ 432 (788)
..+|+.... | + ..+|......-...+. ++.|...+.++... ++. |.
T Consensus 214 R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 214 RKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 888887763 2 1 1234333222212111 22233344443321 221 11
Q ss_pred --------hhHHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHH-HHHHHHHh
Q 035503 433 --------IISWNSVILGFLRNG-------QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAI-LFFQEMLE 496 (788)
Q Consensus 433 --------~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 496 (788)
...|...+.---..+ ..+.+..+|+++... .+-+...|-..+..+...|+.++|. .+|++...
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 123333333322222 123455677777554 3336777888888888888888886 88888876
Q ss_pred CCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC---------CC------------ChhHHHHHHHHHHHcCCHH
Q 035503 497 TGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL---------CL------------PTPIVTSLVDMYAKCGNIH 555 (788)
Q Consensus 497 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~ 555 (788)
. .+.+...+...+......|+++.|..+++.++...+ .| ...+|...+....+.|..+
T Consensus 373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 3 344455566677777788889999999988876420 02 2346777778888888899
Q ss_pred HHHHHHhhCCCC----ChhhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhc
Q 035503 556 QAKRVFDISPSK----ELPVYNAMISGYAMH-GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 630 (788)
Q Consensus 556 ~A~~~~~~~~~~----~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 630 (788)
.|..+|....+. ....|...+....+. ++.+.|.++|+..++. .+-+...+...+.-....|+.+.|..+|+++
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999998766432 223444333333344 4588899999888776 3334555556666667788899999999888
Q ss_pred HhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC
Q 035503 631 FSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 631 ~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
+.. .|+ ...+...+..-.+.|+.+.+.++.+++
T Consensus 531 l~~---~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 531 IDK---ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp TTT---SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHh---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 643 231 345566677777889998888888887
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-12 Score=132.28 Aligned_cols=236 Identities=11% Similarity=-0.036 Sum_probs=116.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGI-KPS----TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY 548 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (788)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+.++++........
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 34455666777777777776654200 111 1234444444555555555555554444321110000
Q ss_pred HHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHhhccCcHHHH
Q 035503 549 AKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPD----SITFTNILNACSHAGLVNEG 623 (788)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A 623 (788)
......+++.+..+|...|++++|++.|++..+... .++ ..++..+..+|...|++++|
T Consensus 180 ----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 180 ----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 000012344445555555555555555555443210 011 12444555555556666666
Q ss_pred HHHHHhcHhhc---CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC------CCCCH-HHHHHHHHHHHhcCC---HH
Q 035503 624 LELFVGMFSDH---QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP------CDPDA-HIIGSLLSTCVKSNE---TE 689 (788)
Q Consensus 624 ~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~g~---~~ 689 (788)
+..++++.... +..|. ..++..++..|.+.|++++|.+.++++- ..|.. ..+..+...+...|+ ++
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 65555554311 11122 3444556666666666666666655541 01111 123445555666666 56
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 690 LAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
+|+..+++. ...|.....+..++.+|...|++++|..++++..+.
T Consensus 324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666666655 233334556777777788888888888777777543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-12 Score=134.53 Aligned_cols=234 Identities=7% Similarity=-0.041 Sum_probs=161.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC-----CHh
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DP-----DSI 605 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p-----~~~ 605 (788)
+...+..+...|++++|+..|+.... ++ ..+|..+...|...|++++|+..+++..+... .+ ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 33456667777777777777765433 22 24677888889999999999999888765311 11 135
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC------CC-CC-HH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP------CD-PD-AH 673 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-p~-~~ 673 (788)
++..+..+|...|++++|+..|++++....-.++ ..++..++.+|...|++++|++.++++- .. |. ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 6788888999999999999999998754322222 2467799999999999999999998871 22 33 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCchHHHHHHHHHhCCC---cHHHHHHHHHHHHCCCccCCceeE
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLE-----PDNPGNYVALSNAYAASGR---WNEVSQVRDIMKEKGLRKNPGCSW 745 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 745 (788)
++..++..+...|++++|+..+++++++. |.....+..++.+|...|+ +++|..++++. +..+.....+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 78899999999999999999999999874 3334446789999999999 77888777764 2111110000
Q ss_pred EEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 035503 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781 (788)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (788)
. .........+++.++...+....++.+++..
T Consensus 343 ~----~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 343 I----DVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp H----HHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred H----HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 0 0001112233466677777766666655543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=133.30 Aligned_cols=277 Identities=12% Similarity=0.012 Sum_probs=183.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-Chh
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPN----IISWNSVILGFLRNGQMNEAKDMFLQMQSL----GVQP-NLI 469 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~ 469 (788)
..+......+...|++++|+..|+++..... .+ ...+..+...+...|++++|...+++..+. +..| ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455667788999999999999999998742 22 367788899999999999999999987432 2111 256
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCc--------------------hHHHHH
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGI-KPS----TTTITCALSACTDVAS--------------------LRNGRA 524 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~ 524 (788)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788888999999999999999999875311 112 1245555556666666 555555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-C
Q 035503 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVYNAMISGYAMHGLAVEALALFKNLQQKGI-D 601 (788)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~ 601 (788)
.++.+... +..... ....++..+...+...|++++|+..+++..+... .
T Consensus 165 ~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 165 LYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55444331 111110 0112455566666667777777777766554210 0
Q ss_pred CC----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CC
Q 035503 602 PD----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CD 669 (788)
Q Consensus 602 p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 669 (788)
++ ..++..+...+...|++++|..++++......-.++ ...+..++..|...|++++|...++++. ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 225666666777788888888888776543221122 3455677888888888888888887761 11
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 670 PD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 670 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
++ ..++..++..+...|++++|...+++++++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 11 346778888999999999999999999988765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=117.70 Aligned_cols=167 Identities=11% Similarity=0.042 Sum_probs=132.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILN 612 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 612 (788)
.+..+|..++..|...|++++|++.|++..+ .+..+|..++.+|...|++++|+..+++..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3456777788888888888888888876543 455678888888888888888888888887753 335566666777
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETE 689 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~ 689 (788)
.+...++++.|...+.++... .|+ ...+..++.+|.+.|++++|++.++++ .. +.+..+|..++.++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 788889999999998888643 344 667778899999999999999998887 23 345678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 035503 690 LAEYISEHLLQLEPDNP 706 (788)
Q Consensus 690 ~A~~~~~~~~~~~p~~~ 706 (788)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999853
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-11 Score=121.72 Aligned_cols=218 Identities=7% Similarity=-0.005 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhh-------ccCch-------HHHHHHHHHHHH-cCCCCChhHHHHHHHHHH
Q 035503 485 NEAILFFQEMLETGIKPSTTTITCALSACT-------DVASL-------RNGRAIHGYLIR-HDLCLPTPIVTSLVDMYA 549 (788)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 549 (788)
++|...|++.+.. .+-+...|..++..+. ..|++ ++|..+++++++ ..| .+..+|..++..+.
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 4566666666653 1333445555554443 23554 677777777777 344 55667777777777
Q ss_pred HcCCHHHHHHHHhhCCC--C-Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHh-hccCcHHHHH
Q 035503 550 KCGNIHQAKRVFDISPS--K-ELP-VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC-SHAGLVNEGL 624 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~ 624 (788)
+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.++.+ +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777775543 2 233 67777777777778888888887777643 22333443332221 2357788888
Q ss_pred HHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035503 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP----CDP--DAHIIGSLLSTCVKSNETELAEYISEHL 698 (788)
Q Consensus 625 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (788)
.+|+++++.. +.+...+..++..+.+.|+.++|..+|+++- .+| ....|..++..+...|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887776532 1235566677777777778888777777762 243 2456777777777778888888888888
Q ss_pred HhcCCCCCc
Q 035503 699 LQLEPDNPG 707 (788)
Q Consensus 699 ~~~~p~~~~ 707 (788)
++..|+++.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 887777543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-11 Score=121.19 Aligned_cols=213 Identities=9% Similarity=0.019 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHH-------cCCH-------HHHHHHHhhCCC----CChhhHHHHHHHHHh
Q 035503 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK-------CGNI-------HQAKRVFDISPS----KELPVYNAMISGYAM 581 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 581 (788)
+.|..+|+++++..| .++.+|..++..+.. .|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 678889999999887 788899998888764 5885 999999986543 345689999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-Hh-HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHh-hcCChH
Q 035503 582 HGLAVEALALFKNLQQKGIDPD-SI-TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLS-RCGNLD 657 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 657 (788)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++ ..|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999884 564 33 788888889999999999999999974 3343 444544443322 379999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 658 EALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL---EPD-NPGNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 658 ~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+|.++|+++ . .+.+...|..++..+...|++++|+.+|+++++. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 2 2345678999999999999999999999999995 554 677899999999999999999999999
Q ss_pred HHHCCCc
Q 035503 732 MKEKGLR 738 (788)
Q Consensus 732 ~~~~~~~ 738 (788)
+.+..+.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-10 Score=118.52 Aligned_cols=265 Identities=11% Similarity=-0.050 Sum_probs=131.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCChh----hHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCHHHHHHHHHHhh
Q 035503 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLI----TWTTLISGLTQNSCGNEAILFFQEMLETGI-KPSTTTITCALSACT 514 (788)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~ 514 (788)
...+...|++++|...+++........+.. .++.+...+...|++++|...+++...... .++...
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------- 91 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--------- 91 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH---------
Confidence 344555666666666666654432111111 334444555566666666666666543110 011100
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------C----ChhhHHHHHHHHHhCC
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-------K----ELPVYNAMISGYAMHG 583 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g 583 (788)
....+..++..+...|++++|...++.... + ....+..+...+...|
T Consensus 92 ----------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (373)
T 1hz4_A 92 ----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 149 (373)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc
Confidence 011223344444555555555544432211 1 0123444555666666
Q ss_pred CHHHHHHHHHHHHHcCCC--C--CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHH-----HHHHHHhhcC
Q 035503 584 LAVEALALFKNLQQKGID--P--DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFG-----CVVNLLSRCG 654 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g 654 (788)
++++|...+++....... + ...++..+...+...|++++|..++++......-......+. ..+..+...|
T Consensus 150 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 666666666665543211 1 123344455556666666666666666543211111111111 1223355666
Q ss_pred ChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCCc
Q 035503 655 NLDEALRVILTMP-CDPD-----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN------PGNYVALSNAYAASGRW 722 (788)
Q Consensus 655 ~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~ 722 (788)
++++|...+++.. ..|. ...+..++..+...|++++|...++++++..+.. ...+..++.++...|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 6776666666652 1111 1234555666666677777777777666543321 13555666777777777
Q ss_pred HHHHHHHHHHHHC
Q 035503 723 NEVSQVRDIMKEK 735 (788)
Q Consensus 723 ~~A~~~~~~~~~~ 735 (788)
++|...+++....
T Consensus 310 ~~A~~~l~~al~~ 322 (373)
T 1hz4_A 310 SDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=118.15 Aligned_cols=164 Identities=10% Similarity=-0.030 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVN 648 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 648 (788)
..|...+..+...|++++|+..|++.++....++...+..+..++...|++++|+..|+++++ ..|+ ...+..++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444445555555555555555544443223444444444445555555555555555442 2233 334445555
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHH
Q 035503 649 LLSRCGNLDEALRVILTM-PCDP-DA-------HIIGSLLSTCVKSNETELAEYISEHLLQLEPD--NPGNYVALSNAYA 717 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 717 (788)
+|...|++++|++.++++ ...| +. ..|..++..+...|++++|+..++++++.+|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555555444 1111 12 23444555555555556666666665555555 5555555555555
Q ss_pred hCCCc---------------------------HHHHHHHHHHHHCC
Q 035503 718 ASGRW---------------------------NEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~---------------------------~~A~~~~~~~~~~~ 736 (788)
..|+. ++|...+++..+..
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 55555 99999999988765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.6e-12 Score=133.82 Aligned_cols=180 Identities=9% Similarity=-0.031 Sum_probs=156.9
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 554 IHQAKRVFDISP---SKELPVYNAMISGYAMHGLA-VEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 554 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
+++++..++... ..+...|..+..++...|++ ++|++.|++.++.. +.+...+..+..+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555666665433 34667899999999999999 99999999998864 33578899999999999999999999999
Q ss_pred cHhhcCCCCCcchHHHHHHHHhhc---------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc--------CCHHH
Q 035503 630 MFSDHQVKPSMEHFGCVVNLLSRC---------GNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKS--------NETEL 690 (788)
Q Consensus 630 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~--------g~~~~ 690 (788)
++ .+.|+...+..++.+|... |++++|++.++++ .. +.+...|..++.+|... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 97 5668888888999999999 9999999999998 23 34577899999999988 99999
Q ss_pred HHHHHHHHHhcCC---CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 691 AEYISEHLLQLEP---DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 691 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
|+..++++++++| +++..|..++.+|...|++++|...++++.+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999 9999999999999999999999999999988653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.5e-13 Score=133.03 Aligned_cols=237 Identities=12% Similarity=0.074 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcC-------
Q 035503 468 LITWTTLISGLTQNSCGNEAILFFQEMLET-------GIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHD------- 533 (788)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 533 (788)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777888888888888888877652 112223344555555566666666666665555431
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhH
Q 035503 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK------GIDP-DSIT 606 (788)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~ 606 (788)
...... ++..+...|...|++++|+..++++.+. +..| ....
T Consensus 107 ~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 011222 3444555555555555555555554432 1111 1233
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhc-----CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC----------CCC
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDH-----QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP----------CDP 670 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 670 (788)
+..+...+...|++++|+.+++++.... +..|. ...+..++.+|.+.|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4445555556666666666665554321 00111 2344455666666666666666655541 001
Q ss_pred C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 671 D-------AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 671 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
. ...+......+...+.+.+|...++++....|..+.++..++.+|.+.|++++|..++++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 1112222233344556666777777777777888888888888888888888888888887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-11 Score=115.92 Aligned_cols=206 Identities=10% Similarity=0.002 Sum_probs=157.3
Q ss_pred CCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 035503 501 PSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMIS 577 (788)
Q Consensus 501 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 577 (788)
.|+..+......+...|++++|...++.+++..+.++...+..++.++...|++++|+..|+...+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999988766777777799999999999999999986654 34467888999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC---cchHHHHH
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDS-------ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS---MEHFGCVV 647 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~ 647 (788)
+|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|+..|++++ .+.|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999988853 2234 446777778888999999999999887 45665 46667888
Q ss_pred HHHhhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 648 NLLSRCGNL--DEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 648 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
.+|...|+. ++|..+. ..+...+... .....+.+++|+..++++++++|+++.+...+..+..
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766653 3322211 1122223222 2345577899999999999999999988888877654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-11 Score=112.33 Aligned_cols=160 Identities=14% Similarity=0.028 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
.+..++..+...|++++|...++.+.. .+..++..++..+...|++++|+..++++.+.. +.+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--------- 79 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVA--------- 79 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH---------
Confidence 445555666666666666666655543 233345555555555555555555555554432 1233334
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|+..
T Consensus 80 ---------------------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 80 ---------------------------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp ---------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------------HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 444444555555555555544441 223456677788888888899999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 695 SEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 695 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++++++..|+++..+..++.+|...|++++|...++++.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999888899999999999999999999998887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=124.17 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=142.2
Q ss_pred hhccCchHHHHHHHHHHHHcCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC-----hhhHHHHHH
Q 035503 513 CTDVASLRNGRAIHGYLIRHDLC-----LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-----KE-----LPVYNAMIS 577 (788)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~ 577 (788)
+...|++++|...++++.+.... ....++..++..|...|++++|...++.... .+ ..+++.++.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 44556666666666665543110 1233566677777777777777666654321 11 235677778
Q ss_pred HHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC--CCCC-cchHHHHHHH
Q 035503 578 GYAMHGLAVEALALFKNLQQK----GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQ--VKPS-MEHFGCVVNL 649 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~-~~~~~~l~~~ 649 (788)
+|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|+..++++..... ..|. ..++..++..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888776652 1111 124566677778888888888888887765211 1222 4556688888
Q ss_pred HhhcCChHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 650 LSRCGNLDEALRVILTM----PC--DPDA-HIIGSLLSTCVKSNE---TELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
|.+.|++++|.++++++ .. .|.. ..+..+...+...++ +++|+..+++. ...|+....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888888776 11 2222 344555556667777 77777777662 23344456777889999999
Q ss_pred CCcHHHHHHHHHHHH
Q 035503 720 GRWNEVSQVRDIMKE 734 (788)
Q Consensus 720 g~~~~A~~~~~~~~~ 734 (788)
|++++|..+++++.+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-12 Score=129.51 Aligned_cols=242 Identities=10% Similarity=0.040 Sum_probs=151.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhC------C
Q 035503 432 NIISWNSVILGFLRNGQMNEAKDMFLQMQSL-------GVQPNLITWTTLISGLTQNSCGNEAILFFQEMLET------G 498 (788)
Q Consensus 432 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 498 (788)
+..++..+...+...|++++|..+|+++.+. ..+.....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888899999999999999999998652 22334577888999999999999999999998863 1
Q ss_pred CCC-CHHHHHHHHHHhhccCchHHHHHHHHHHHHcC-----C--CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh
Q 035503 499 IKP-STTTITCALSACTDVASLRNGRAIHGYLIRHD-----L--CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELP 570 (788)
Q Consensus 499 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 570 (788)
-.| ....+..+...+...|++++|...++.+++.. . .... .
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-------------------------------~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA-------------------------------K 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH-------------------------------H
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH-------------------------------H
Confidence 122 24567777888888999999999988877641 1 0112 2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc------CCC
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQK------GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDH------QVK 637 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~ 637 (788)
++..+...+...|++++|+++++++.+. +..| ...++..+..++...|++++|..+++++.... ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3444555555555566665555555442 1122 12345555566666677777766666665321 111
Q ss_pred CCc-chHH------HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 638 PSM-EHFG------CVVNLLSRCGNLDEALRVILTMP-CDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 638 p~~-~~~~------~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+.. ..+. .+...+...+.+.+|...+.... ..| ...++..++.+|...|++++|+..+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 211 1111 22233344555555666666653 223 3457888999999999999999999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-10 Score=118.88 Aligned_cols=226 Identities=10% Similarity=-0.025 Sum_probs=151.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCC------CChhHHHH
Q 035503 475 ISGLTQNSCGNEAILFFQEMLETGI-KPS----TTTITCALSACTDVASLRNGRAIHGYLIRHDLC------LPTPIVTS 543 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 543 (788)
...+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+.++++.... ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344556666666666666554210 111 234445555566666666666666665552111 11335667
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHhHHHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQ-----KGIDPDSITFTN 609 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 609 (788)
++.+|...|++++|.+.|++..+ .+ ..++..++.+|...|++++|++.|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 77777788888887777765432 12 13677788888899999999999988776 32 223567777
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPS---MEHFGCVVNLLSRCGN---LDEALRVILTMPCDPDA-HIIGSLLSTC 682 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~ 682 (788)
+..++.+.|++++|..++++......-.++ ...+..+...+...|+ +.+|+.++++....|+. ..+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 888899999999999999988765333222 2344567777788888 89999999987544443 4567788889
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 035503 683 VKSNETELAEYISEHLLQL 701 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~ 701 (788)
...|++++|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-10 Score=105.81 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 035503 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGY 579 (788)
Q Consensus 503 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 579 (788)
...+..+...+...|++++|...++.+.+..+ .+...+..++..+...|++++|...++.+.+ .+...|..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34566777888999999999999999988776 6788899999999999999999999987643 4567888899999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
...|++++|++.++++.... +.+...+..+...+...|++++|...++++.+. .|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~--------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP--------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc---------------------
Confidence 99999999999999988763 345666777777777888888888887777543 12
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 660 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+...+..++..+...|++++|...++++++.+|+++.
T Consensus 142 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 ----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred ----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 23445666677777777777777778877777777544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-10 Score=117.36 Aligned_cols=299 Identities=10% Similarity=-0.018 Sum_probs=178.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchh----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCh----hhH
Q 035503 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNII----SWNSVILGFLRNGQMNEAKDMFLQMQSLGV-QPNL----ITW 471 (788)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~----~~~ 471 (788)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445566778999999999999998864222222 456677888999999999999998744211 1122 235
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 035503 472 TTLISGLTQNSCGNEAILFFQEMLET----GIK--PS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544 (788)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 544 (788)
..+...+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++.+.........
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 171 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ----- 171 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-----
Confidence 66777888999999999999887652 111 21 1233334445555566666666655555433211100
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHH-----HHHHHhhccC
Q 035503 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-ITFT-----NILNACSHAG 618 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~-----~ll~~~~~~g 618 (788)
....++..+...+...|++++|...+++.......++. ..+. ..+..+...|
T Consensus 172 ----------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 172 ----------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp ----------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 01123555666666677777777777666543111111 1111 1223356777
Q ss_pred cHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhc
Q 035503 619 LVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRVILTMP-------CDPDA-HIIGSLLSTCVKS 685 (788)
Q Consensus 619 ~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~ 685 (788)
++++|..++++.... .|. ...+..++..+...|++++|.+.++++. ..++. ..+..+..++...
T Consensus 230 ~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 230 DKAAAANWLRHTAKP---EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp CHHHHHHHHHHSCCC---CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC---CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 888888777776532 221 1134566777778888888887777651 11122 2555667778888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 686 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|+.++|...+++++...+... ....+...| +....+++.+....
T Consensus 307 g~~~~A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHHHHHHhCC
Confidence 889999888888887655421 112333444 45555666655544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-10 Score=111.51 Aligned_cols=205 Identities=12% Similarity=0.019 Sum_probs=144.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC-HhHH
Q 035503 536 LPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--K-E---LPVYNAMISGYAMHGLAVEALALFKNLQQKGI-DPD-SITF 607 (788)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~ 607 (788)
.+...+..++..+.+.|++++|+..|+.+.. | + ..++..++.+|...|++++|+..|++.++... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566777778888888888888888876654 2 2 34677778888888888888888888777531 112 3345
Q ss_pred HHHHHHhhc--------cCcHHHHHHHHHhcHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 035503 608 TNILNACSH--------AGLVNEGLELFVGMFSDHQVKPSM-EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSL 678 (788)
Q Consensus 608 ~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 678 (788)
..+..++.. .|++++|+..|+++++.+ |+. .....+.......++. ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 556666766 788888888888877543 432 2221211111111111 1125677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhC----------CCcHHHHHHHHHHHHCCCccCCceeE
Q 035503 679 LSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNAYAAS----------GRWNEVSQVRDIMKEKGLRKNPGCSW 745 (788)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~ 745 (788)
+..|...|++++|+..++++++..|++ +.++..++.+|... |++++|...++++++..+ +
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----~--- 227 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----D--- 227 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----T---
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----C---
Confidence 888999999999999999999999995 45899999999977 899999999999987642 2
Q ss_pred EEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 035503 746 IQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781 (788)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (788)
+|.+......+..+...+++
T Consensus 228 ----------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 ----------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------CTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------ChHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.7e-11 Score=117.36 Aligned_cols=162 Identities=12% Similarity=-0.023 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--CHhHHHHHHHHhhcc-CcHHHHHHHHHhcHhhcCCCCC----c
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGI---DP--DSITFTNILNACSHA-GLVNEGLELFVGMFSDHQVKPS----M 640 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~ 640 (788)
+|+.+..+|...|++++|+..|++.++... .+ -..++..+...|... |++++|+..|++++....-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 566666677777777777777766554210 11 134566777778885 8888888888887653211111 3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-PCDP---DA-----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN--- 708 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--- 708 (788)
.++..++..|.+.|++++|++.++++ ...| .. ..+..++.++...|++++|+..++++++++|+....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 45678888899999999999998887 1222 21 256778888899999999999999999999986553
Q ss_pred --HHHHHHHHH--hCCCcHHHHHHHHHH
Q 035503 709 --YVALSNAYA--ASGRWNEVSQVRDIM 732 (788)
Q Consensus 709 --~~~l~~~~~--~~g~~~~A~~~~~~~ 732 (788)
+..++..|. ..+++++|...|+++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 445566664 457788888888654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=114.54 Aligned_cols=251 Identities=11% Similarity=0.002 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHH
Q 035503 416 EASRLFYQMQLEGISPNIISWNSVILGFLRNG---QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492 (788)
Q Consensus 416 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (788)
+|.+++++..+. .++....+ .+.+.+ ++++|...|++. ...|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-----KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-----hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 466677776665 23222222 222332 477777777665 335667788888888777
Q ss_pred HHHhC----CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 035503 493 EMLET----GIKPS-TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK 567 (788)
Q Consensus 493 ~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (788)
+.... |-.++ ..++..+..++...|++++|...++++++..+ ..|+...+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~---------------~~g~~~~~---------- 116 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT---------------HRGQFRRG---------- 116 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HTTCHHHH----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------HcCCHHHH----------
Confidence 76542 11111 23445555555555555555555555444211 11111111
Q ss_pred ChhhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCC-C----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcc
Q 035503 568 ELPVYNAMISGYAMH-GLAVEALALFKNLQQKGIDP-D----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSME 641 (788)
Q Consensus 568 ~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 641 (788)
..+|+.+..+|... |++++|+..|++.++..... + ..++..+...+...|++++|+..|+++.....-.+...
T Consensus 117 -a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 117 -ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp -HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred -HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 12466677777775 88888888777766531100 1 24566677778888888888888887764321111111
Q ss_pred -----hHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 642 -----HFGCVVNLLSRCGNLDEALRVILTM-PCDPDA------HIIGSLLSTCV--KSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 642 -----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+..++.++...|++++|+..+++. ...|+. ..+..++.++. ..+++++|+..|++++.++|....
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 4566777788888888888888777 333432 12344555553 446788888888888888887544
Q ss_pred hHHHHH
Q 035503 708 NYVALS 713 (788)
Q Consensus 708 ~~~~l~ 713 (788)
.+..+-
T Consensus 276 ~~~~~k 281 (292)
T 1qqe_A 276 ILNKIK 281 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=131.11 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHh
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 614 (788)
..+++.|+.+|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|++.|++.++.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45666677777777777777777765443 345677777777888888888888888877753 22456777777788
Q ss_pred hccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 035503 615 SHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELA 691 (788)
Q Consensus 615 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 691 (788)
...|++++|++.|+++++ +.|+ ...+..++.+|.+.|++++|++.|+++ ...| +...+..++.++...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888887764 3454 567778888888888888888888776 3344 356788888888888888888
Q ss_pred HHHHHHHHhcCCC
Q 035503 692 EYISEHLLQLEPD 704 (788)
Q Consensus 692 ~~~~~~~~~~~p~ 704 (788)
++.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 8888888876544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=104.06 Aligned_cols=182 Identities=14% Similarity=0.053 Sum_probs=127.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh----H
Q 035503 537 PTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSI----T 606 (788)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~ 606 (788)
+...+..++..+.+.|++++|+..|+.+.. |+ ..++..++.+|...|++++|+..|+++++.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 455677788888999999999999987653 22 2467778889999999999999999988753 4321 3
Q ss_pred HHHHHHHhhc------------------cCcHHHHHHHHHhcHhhcCCCCCcc-hHHHHHHHHhhcCChHHHHHHHHhCC
Q 035503 607 FTNILNACSH------------------AGLVNEGLELFVGMFSDHQVKPSME-HFGCVVNLLSRCGNLDEALRVILTMP 667 (788)
Q Consensus 607 ~~~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 667 (788)
+..+..++.. .|++++|+..|+++++. .|+.. ....... .+......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH-------
Confidence 4444444443 46677777777777643 34422 1111110 00000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 668 CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP---GNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 668 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
......++..+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01223567778999999999999999999999976 67999999999999999999999999887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-11 Score=116.66 Aligned_cols=165 Identities=13% Similarity=0.093 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc-----CCCC
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQK------GIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDH-----QVKP 638 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p 638 (788)
+|..+..+|...|++++|++.|++.... .-.| ...++..+...+...|++++|+.+++++.... +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455555555555665655555554442 1012 23445555555666666666666666654321 0012
Q ss_pred C-cchHHHHHHHHhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcC------CHHHHHHHHHHHHh
Q 035503 639 S-MEHFGCVVNLLSRCGNLDEALRVILTMP----------CDPD-AHIIGSLLSTCVKSN------ETELAEYISEHLLQ 700 (788)
Q Consensus 639 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~ 700 (788)
. ...+..++.+|.+.|++++|.++++++. ..+. ...|..+...+...+ .+..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 1 3344566666666666666666665541 1111 123333333333222 23444444444444
Q ss_pred cCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 701 LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 701 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..|..+.++..++.+|...|++++|..++++.++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556677888888888888888888888887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=128.60 Aligned_cols=189 Identities=12% Similarity=0.020 Sum_probs=108.9
Q ss_pred hccCchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC
Q 035503 514 TDVASLRNGRAIHGYLI--------RHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMH 582 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 582 (788)
...|++++|...+++++ +..+ .+...+..++.+|...|++++|+..|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777777 4444 4556666667777777777777776665543 3445666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHH
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALR 661 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 661 (788)
|++++|++.|++.++.. +.+...+..+..++.+.|++++ +..|+++++ +.|+ ...+..++.+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777666666643 2234555666666666666666 666666653 2343 4555566666666666666666
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCch
Q 035503 662 VILTM-PCDPD-AHIIGSLLSTCVKSNE-----TELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 662 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.++++ ...|+ ...+..++.++...++ .+...++.+...++.++++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 66666 23444 3455555555544444 233344444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-10 Score=109.27 Aligned_cols=171 Identities=10% Similarity=-0.014 Sum_probs=136.7
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC
Q 035503 560 VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS 639 (788)
Q Consensus 560 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 639 (788)
.+......+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.. ..|+
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~ 183 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQD 183 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCS
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcc
Confidence 3333333444567778888889999999999999988863 33567788888889999999999999998864 3465
Q ss_pred cchHH-HHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHH
Q 035503 640 MEHFG-CVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN--PGNYVALSN 714 (788)
Q Consensus 640 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~ 714 (788)
..... .....+.+.|+.++|.+.++++ . .+.+...+..++..+...|++++|+..++++++.+|++ ..++..|+.
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 44333 4444567788888888888777 2 33456789999999999999999999999999999997 889999999
Q ss_pred HHHhCCCcHHHHHHHHHHHH
Q 035503 715 AYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 715 ~~~~~g~~~~A~~~~~~~~~ 734 (788)
+|...|+.++|...+++.+.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999988654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=7e-10 Score=108.55 Aligned_cols=205 Identities=11% Similarity=0.013 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C---hhh
Q 035503 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIHQAKRVFDISPS--K-E---LPV 571 (788)
Q Consensus 500 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~ 571 (788)
+.+...+......+...|++++|...++.+++..|... ..++..++.+|.+.|++++|+..|+...+ | + ..+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566777888889999999999999999999887322 67889999999999999999999987654 2 1 246
Q ss_pred HHHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcch
Q 035503 572 YNAMISGYAM--------HGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEH 642 (788)
Q Consensus 572 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 642 (788)
+..+..++.. .|++++|+..|+++++. .|+. .....+.. +..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH-----HHHH
Confidence 7788889988 99999999999999886 3443 22222111 1111000 0112
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLSTCVKS----------NETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
+..++..|.+.|++++|+..++++ ...|+ ...+..++.+|... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456778888888888888888776 22232 34677777777755 8999999999999999999864
Q ss_pred ---hHHHHHHHHHhCCCcHHH
Q 035503 708 ---NYVALSNAYAASGRWNEV 725 (788)
Q Consensus 708 ---~~~~l~~~~~~~g~~~~A 725 (788)
+...+..++.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 455566666666655443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-11 Score=106.33 Aligned_cols=139 Identities=13% Similarity=0.051 Sum_probs=86.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCC
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGN 655 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 655 (788)
.+...|++++|+..+++.... .| +...+..+...|.+.|++++|++.|+++++ +.|+ ...+..++.+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 344445555566555554332 22 223344455556666666666666666553 2343 4555566666666666
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 656 LDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEY-ISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 656 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
+++|+..|+++ ...| +...|..++..|...|++++|.. .++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666665 2233 45677778888888888766554 4588888888888888888888888775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.2e-10 Score=100.48 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=99.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH-Hh
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL-LS 651 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 651 (788)
..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++... .|+...+..+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 344445555555555555555544431 123444555555555666666666666555422 2322222111111 11
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhCCCcHHHHH
Q 035503 652 RCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN--PGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 652 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
..+...+|+..++++ ...| +...+..++.++...|++++|+..++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222223455566555 2234 46788899999999999999999999999999985 5599999999999999999999
Q ss_pred HHHHHHH
Q 035503 728 VRDIMKE 734 (788)
Q Consensus 728 ~~~~~~~ 734 (788)
.|++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=9.4e-09 Score=99.56 Aligned_cols=245 Identities=9% Similarity=0.013 Sum_probs=124.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCch
Q 035503 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASL 519 (788)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 519 (788)
+.-..-.|++..++.-...+.. ......-..+.++|...|++.... .-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc--
Confidence 3445567888877773333221 112223333456777777766311 1223322332222 222222
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 520 RNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSK-----ELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 520 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
+...+++.+..+. ++......++.++...|++++|++++...... +...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDKQ-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTSC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555555443 34444456667777777777777777655322 234555666677777777777777777
Q ss_pred HHHcCCCC-----CHhHHHHHHHH--hhccC--cHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 035503 595 LQQKGIDP-----DSITFTNILNA--CSHAG--LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665 (788)
Q Consensus 595 m~~~~~~p-----~~~~~~~ll~~--~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (788)
|.+. .| +..+...+..+ ....| ++++|..+|+++... .|+......+..++.+.|++++|.+.++.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7653 44 23444444444 22223 666777777766432 24322222233355566666666666554
Q ss_pred CCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 666 MPC------------DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 666 ~~~------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
+.. +.++.+.-+++......|+ .|.+.++++.+..|+++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 311 1223344344444444454 55566666666666655443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-08 Score=96.37 Aligned_cols=175 Identities=9% Similarity=-0.037 Sum_probs=100.8
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 557 AKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 557 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
|+..|++... ++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555655442 333444566666677777777777777665543212 334455555567777777777777777643
Q ss_pred hcCCCC-----CcchHHHHHHH--HhhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 035503 633 DHQVKP-----SMEHFGCVVNL--LSRCG--NLDEALRVILTMP-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQL- 701 (788)
Q Consensus 633 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 701 (788)
..| +..+...|+.+ ....| +..+|..+|+++. ..|+...-..+..++...|++++|+..++.+++.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345 23344444433 33333 6777777777762 3344222222333566667777777777766654
Q ss_pred ---------CCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 702 ---------EPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 702 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+|+++.++.+++.+....|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36667777666666666665 6667777766654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-10 Score=100.35 Aligned_cols=124 Identities=10% Similarity=-0.041 Sum_probs=104.3
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSN 686 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g 686 (788)
|...+...|++++|+..++... ...|+ ...+..++.+|.+.|++++|++.|+++ ... .+..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999998775 44454 455668999999999999999999998 333 45678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHH-HHHHHHCC
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQV-RDIMKEKG 736 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 736 (788)
++++|+..|+++++++|+++.++..++.+|.+.|++++|... ++++++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887765 58877754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-09 Score=97.80 Aligned_cols=162 Identities=7% Similarity=-0.052 Sum_probs=129.6
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC----cHHHHHHHHHhcHhhcCCCCCcch
Q 035503 567 KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAG----LVNEGLELFVGMFSDHQVKPSMEH 642 (788)
Q Consensus 567 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~ 642 (788)
.++.++..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|+++|++.... -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 455667777777777888888888888887754 55666667777777 6 888999999888542 35667
Q ss_pred HHHHHHHHhh----cCChHHHHHHHHhCCC-CCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 643 FGCVVNLLSR----CGNLDEALRVILTMPC-DPD---AHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 643 ~~~l~~~~~~----~g~~~~A~~~~~~~~~-~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
+..|+.+|.. .+++++|.++++++.. .|. +..+..|+..|.. .+++++|+..++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888877 7899999999988843 332 6788889999887 78999999999999998 77788999
Q ss_pred HHHHHHHhC-C-----CcHHHHHHHHHHHHCCC
Q 035503 711 ALSNAYAAS-G-----RWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 711 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 737 (788)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999864 3 89999999999988874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=99.87 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=92.2
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 635 QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 635 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
.+.|+ ...+..++..+.+.|++++|+..|+++ ... .+...|..++.+|...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55665 567778999999999999999999988 333 457789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++.+|...|++++|...|+++++...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-09 Score=91.33 Aligned_cols=124 Identities=21% Similarity=0.197 Sum_probs=77.7
Q ss_pred HHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 035503 611 LNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNET 688 (788)
Q Consensus 611 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 688 (788)
...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++. .+.+...+..++..+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 333444444444444444443210 1123333344444444455555554444441 123445677777788888888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++|+..++++++..|+++..+..++.+|...|++++|...++++.+..
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888888888888888888888888888888999999988888887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-09 Score=100.09 Aligned_cols=128 Identities=9% Similarity=0.007 Sum_probs=98.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHh
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLS 651 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 651 (788)
+.+..+|...|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++++ +.|+ ...+..++.+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 348889999999999999999988864 33677888888899999999999999999875 3465 677888888887
Q ss_pred hcCC--hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 652 RCGN--LDEALRVILTMPC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 652 ~~g~--~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..|+ .+++...++.... .|....+...+.++...|++++|+..++++++++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6654 4455666666632 222334556677778889999999999999999998
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-09 Score=105.33 Aligned_cols=163 Identities=14% Similarity=0.097 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC-------C----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS-------K----ELPVYNAMISGYAMHGLAVEALALFKNLQQK------GIDP 602 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p 602 (788)
++..++.+|...|++++|...|++... + ...++..+...|...|++++|+..++++.+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444455555555555555555543321 1 1235667777777788888888887776654 1122
Q ss_pred -CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhc------CCCCC-cchHHHHHHHHhhcC------ChHHHHHHHHhCCC
Q 035503 603 -DSITFTNILNACSHAGLVNEGLELFVGMFSDH------QVKPS-MEHFGCVVNLLSRCG------NLDEALRVILTMPC 668 (788)
Q Consensus 603 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~ 668 (788)
...++..+..++...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 23566777778888888888888888776531 12233 333334444433322 34445555555532
Q ss_pred -CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 669 -DPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 669 -~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
.|+ ..++..++..|...|++++|+..++++++..
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 233 3578889999999999999999999998753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-09 Score=100.31 Aligned_cols=159 Identities=10% Similarity=0.022 Sum_probs=117.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHH----------------HHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQKGIDPD-SITFTN----------------ILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
...+..+...|++++|+..|++.++. .|+ ...+.. +..++...|++++|+..|+++++.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 33445566677777777777776664 343 344444 788899999999999999999853
Q ss_pred CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHH
Q 035503 636 VKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSN--ETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 636 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
.|+ ...+..++.+|...|++++|+..|+++ ...| +...|..++.+|...| +.+.+...+++++...|. ...++
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 454 678889999999999999999999998 3344 5678889998886665 445667777777654333 33567
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 711 ALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 711 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.++.++...|++++|...|+++++..+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 789999999999999999999887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.7e-09 Score=116.43 Aligned_cols=159 Identities=8% Similarity=-0.057 Sum_probs=123.7
Q ss_pred cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 551 CGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.|++++|++.|++..+ .+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999987765 445789999999999999999999999988853 335678888888999999999999999
Q ss_pred HhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 035503 628 VGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKS---NETELAEYISEHLLQL 701 (788)
Q Consensus 628 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 701 (788)
+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ ... .+...+..++..+... |++++|+..++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999754 354 678889999999999999999999987 233 3567888999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 035503 702 EPDNPGNYVALS 713 (788)
Q Consensus 702 ~p~~~~~~~~l~ 713 (788)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999888877
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-09 Score=115.16 Aligned_cols=182 Identities=13% Similarity=-0.004 Sum_probs=134.7
Q ss_pred HhCCCchHHHHHHHHHH--------hCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 035503 479 TQNSCGNEAILFFQEML--------ETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550 (788)
Q Consensus 479 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (788)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++++.++ .+...+..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67788888888888887 32 133456677777788888888888888888888877 677788888888888
Q ss_pred cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 551 CGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 551 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
.|++++|++.|++..+ .+...|..+..++...|++++ ++.|++.++.+ +.+...+..+..++.+.|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888876543 455678888888888888888 88888887753 335667777888888888888888888
Q ss_pred HhcHhhcCCCCC-cchHHHHHHHHhhcCC--------hHHHHHHHHhCC
Q 035503 628 VGMFSDHQVKPS-MEHFGCVVNLLSRCGN--------LDEALRVILTMP 667 (788)
Q Consensus 628 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 667 (788)
+++. .+.|+ ...+..++.++...|+ +++|.+.+..+.
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 8776 55666 4566677777766444 666666666664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=94.53 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=89.1
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 635 QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 635 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
.+.|+ ...+..++..+.+.|++++|+..|+++ . .+.+...|..++.+|...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44454 456667888899999999999999887 2 33467789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++.+|...|++++|...|++.++..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-09 Score=90.58 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 636 VKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 636 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
+.|+ ...+...+..|.+.|++++|++.|+++ .. +.+...|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3344 344555666666666666666666665 22 23455666677777777777777777777777777777777777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 713 SNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.+|...|++++|...|++.++..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 777777777777777777766643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=87.46 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
+|..++..+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677778888888888888888887754 3356667777777888888888888888886531 23456677888888
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 651 SRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 88889999888888772 23356778888999999999999999999999988863
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=111.68 Aligned_cols=145 Identities=12% Similarity=-0.036 Sum_probs=70.9
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHH
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFK 593 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 593 (788)
|++++|...++++++..+ .+...+..++..|...|++++|.+.|++..+ .+...|..+..+|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455566666666655554 4455556666666666666666666654433 233455556666666666666666666
Q ss_pred HHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhc---CChHHHHHHHHhC
Q 035503 594 NLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRC---GNLDEALRVILTM 666 (788)
Q Consensus 594 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 666 (788)
+..+.. +.+...+..+..++...|++++|++.|+++.+. .|+ ...+..++.++... |+.++|.+.++++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 655542 223445555555566666666666666655432 232 44455556666665 6666666665554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=102.10 Aligned_cols=219 Identities=12% Similarity=0.030 Sum_probs=156.7
Q ss_pred CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (788)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888999888877631 111 0 11146777777776654 5678888999999888
Q ss_pred HhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--HhHHHHHHHHhhccCcHHHHHHH
Q 035503 561 FDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGI---DPD--SITFTNILNACSHAGLVNEGLEL 626 (788)
Q Consensus 561 ~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~g~~~~A~~~ 626 (788)
|.+... .+ ..+|+.+..+|...|++++|+..|++.++.-. .+. ..++..+...|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 875443 12 23788899999999999999999998765311 121 3567778888888 999999999
Q ss_pred HHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 035503 627 FVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDPD----AHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 627 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
|++++....-..+ ..++..++.+|.+.|++++|++.++++. ..++ ...+..++..+...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998754321111 3567789999999999999999998871 1122 23566777778888999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHhCCCcHHHHH
Q 035503 695 SEHLLQLEPDNPGN-----YVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 695 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 727 (788)
+++++ ++|+.... ...++..+ ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99985543 44455555 5677666655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-07 Score=93.09 Aligned_cols=226 Identities=8% Similarity=-0.008 Sum_probs=126.2
Q ss_pred CCchHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccC--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----HHc---
Q 035503 482 SCGNEAILFFQEMLETGIKPST-TTITCALSACTDVA--SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMY----AKC--- 551 (788)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 551 (788)
...++|+..+++++. +.|+. ..++.-...+...+ .++++...++.++...| .+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 334578888888777 44544 34555555566666 77777777777777776 4444555444444 444
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc------H
Q 035503 552 GNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAV--EALALFKNLQQKGIDPDSITFTNILNACSHAGL------V 620 (788)
Q Consensus 552 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~ 620 (788)
+++++++.+++.+.+ ++..+|+.-..++...|+++ ++++.++++++.+ .-|...|......+...|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 566666666665543 44456665555566666665 6666666666654 2345555555555555554 5
Q ss_pred HHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE-ALRVILTMP-C----DPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
+++++.+++++.. -+-+...+..+..++.+.|+..+ +.++..++- . ...+..+..++.++.+.|+.++|+++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6666666665532 11234455555555555555333 333444431 1 12344555555555555666666666
Q ss_pred HHHHHh-cCCCCCchHHHHH
Q 035503 695 SEHLLQ-LEPDNPGNYVALS 713 (788)
Q Consensus 695 ~~~~~~-~~p~~~~~~~~l~ 713 (788)
++.+.+ .+|.....|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 666554 4665555554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-08 Score=93.56 Aligned_cols=129 Identities=15% Similarity=-0.030 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|+..|+++.... +.+...+..++.+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 3455666777777777777777765 34566677777777777777777777777776431 22345666777777
Q ss_pred hhcCChHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 651 SRCGNLDEALRVILTM-PCDP-----------------DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
...|++++|++.++++ ...| ....+..++.++...|++++|+..++++++.+|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 7777777777777665 1111 12456666677777777777777777777777764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9.7e-09 Score=89.38 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=88.5
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 635 QVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 635 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
.+.|+ ...+..++..+.+.|++++|+..|+++ . .+.+...|..++.++...|++++|+..++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44454 455667888889999999999999887 2 33467789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++.+|...|++++|...++++++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.8e-07 Score=88.77 Aligned_cols=212 Identities=13% Similarity=0.102 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC--CHHHHHHHHhhCCC---CChhhHHHHHHHH----HhC---CCHH
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG--NIHQAKRVFDISPS---KELPVYNAMISGY----AMH---GLAV 586 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---g~~~ 586 (788)
.++|..+.+.++..+| ....+|+.-..++...| +++++++.++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3578888888898888 67778888888888888 99999999987654 4556777654444 445 7889
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH--HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC------hHH
Q 035503 587 EALALFKNLQQKGIDPDSITFTNILNACSHAGLVN--EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN------LDE 658 (788)
Q Consensus 587 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 658 (788)
+++++++++.+.. +-+..+|..-..++.+.|.++ ++++.++++++.. .-+...+.....++.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999998864 346777877777777888887 8999999988542 2345666666666666666 888
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 659 ALRVILTM--PCDPDAHIIGSLLSTCVKSNET-ELAEYISEHLLQLE---PDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 659 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
++++++++ ..+.|...|+.+...+...|+. +....+++++++++ |.++.++..++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99888877 2345677898888888887764 44667888888776 778889999999999999999999999998
Q ss_pred HH
Q 035503 733 KE 734 (788)
Q Consensus 733 ~~ 734 (788)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=85.79 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=83.6
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLST 681 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 681 (788)
..+......+.+.|++++|++.|+++++. .| +...+..++.+|.+.|++++|++.++++ .. +.+...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44556666777777777777777776642 34 3566667777777777777777777776 22 3356789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
+...|++++|+..++++++++|+++.++..|+.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999998887653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.5e-08 Score=92.35 Aligned_cols=186 Identities=13% Similarity=0.012 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-h---hhHH
Q 035503 502 STTTITCALSACTDVASLRNGRAIHGYLIRHDLCLP--TPIVTSLVDMYAKCGNIHQAKRVFDISPS--KE-L---PVYN 573 (788)
Q Consensus 502 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~ 573 (788)
+...+......+...|++++|...++.+++..|... ...+..++.+|.+.|++++|+..|+.+.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677788999999999999999999876433 46788899999999999999999987654 22 2 2455
Q ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHhcHhhc
Q 035503 574 AMISGYAM------------------HGLAVEALALFKNLQQKGIDPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDH 634 (788)
Q Consensus 574 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 634 (788)
.+..++.. .|++++|+..|+++++. .|+.. ....... .+ .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LV------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HH------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HH------HHHHHH----
Confidence 56666654 67899999999999885 45543 2221111 00 011111
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 635 QVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA----HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 635 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
......++..|.+.|++++|+..++++ ...|+. ..+..++.++...|+.++|+..++++....|++...
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 012235678899999999999999887 223332 468888999999999999999999999999987553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.8e-08 Score=95.53 Aligned_cols=161 Identities=10% Similarity=0.027 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhH-HHHH
Q 035503 500 KPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS--KELPVY-NAMI 576 (788)
Q Consensus 500 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~ 576 (788)
+.+...+..+...+...|++++|...++++++..| .+...+..++.+|...|++++|...++.+.. |+.... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 33445566666777788888888888888888777 5677788888888888888888888887765 333222 2223
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC---cchHHHHHHHHhhc
Q 035503 577 SGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS---MEHFGCVVNLLSRC 653 (788)
Q Consensus 577 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 653 (788)
..+...++.++|+..+++..+.. +.+...+..+..++...|++++|+..|+++++. .|+ ...+..++.+|...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHc
Confidence 33555666666777777766653 334566666666777777777777777777643 233 33455556666666
Q ss_pred CChHHHHHHHHh
Q 035503 654 GNLDEALRVILT 665 (788)
Q Consensus 654 g~~~~A~~~~~~ 665 (788)
|+.++|...+++
T Consensus 269 g~~~~a~~~~r~ 280 (287)
T 3qou_A 269 GTGDALASXYRR 280 (287)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 665555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-07 Score=91.71 Aligned_cols=161 Identities=7% Similarity=-0.064 Sum_probs=118.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHH
Q 035503 574 AMISGYAMHGLAVEALALFKNLQQKGI-DPDS----ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFG 644 (788)
Q Consensus 574 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~ 644 (788)
..+..+...|++++|+.++++...... .|+. ..+..+...+...|++++|+..|+++.....-.++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788888888888888776421 1221 12334555677778888898888888753222222 22577
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 035503 645 CVVNLLSRCGNLDEALRVILTMP-------CD-PD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN------PGNY 709 (788)
Q Consensus 645 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 709 (788)
.++..|...|++++|+.+++++- .. +. ..++..++..|...|++++|+..+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888889999998888887762 11 11 2478889999999999999999999999876543 5689
Q ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHH
Q 035503 710 VALSNAYAASGR-WNEVSQVRDIMKE 734 (788)
Q Consensus 710 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 734 (788)
..+|.+|.+.|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999998864
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=94.63 Aligned_cols=163 Identities=6% Similarity=-0.079 Sum_probs=116.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-----hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cch
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDS-----ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEH 642 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~ 642 (788)
+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|+..++++.....-..+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 444566677788888888888777664322111 12333445567778888888888877643211112 346
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTMP----CDPD-----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD------NPG 707 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~ 707 (788)
+..++..|...|++++|+.+++++. ..|+ ..++..++..|...|++++|+..+++++++.++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 6788888888999998888887761 1122 257888999999999999999999999987543 156
Q ss_pred hHHHHHHHHHhCCCcHHH-HHHHHHHHH
Q 035503 708 NYVALSNAYAASGRWNEV-SQVRDIMKE 734 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 734 (788)
+|..++.+|.+.|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 789999999999999999 787888754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-08 Score=88.73 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-hh
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA-CS 615 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 615 (788)
....++..+...|++++|+..|+.... .+...|..+..++...|++++|+..|++.... .|+......+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 455667777788888888888887765 44567778888888888888888888886654 3343332222111 12
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD---AHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~ 690 (788)
..+...+|+..++++++ ..|+ ...+..++.++...|++++|...++++ ...|+ ...+..++.++...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22223346777877764 3454 677778888888888888888888876 34443 4578888888888899999
Q ss_pred HHHHHHHHHh
Q 035503 691 AEYISEHLLQ 700 (788)
Q Consensus 691 A~~~~~~~~~ 700 (788)
|+..|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.9e-08 Score=98.47 Aligned_cols=197 Identities=7% Similarity=-0.042 Sum_probs=151.7
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
..|++++|..+++++.+.... . .+...+++++|...|.. .+..|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 457888899999888775431 1 01115788888887764 46678899999999999998
Q ss_pred HHHcCC---CC--CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 035503 595 LQQKGI---DP--DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILT 665 (788)
Q Consensus 595 m~~~~~---~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (788)
..+... .+ -..+|..+..+|...|++++|+..|++.+..+.-..+ ..++..++.+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 766321 11 1346788888899999999999999988654321112 3567789999988 999999999988
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhCCCcHHHHHHHHH
Q 035503 666 MP----CDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP------GNYVALSNAYAASGRWNEVSQVRDI 731 (788)
Q Consensus 666 ~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 731 (788)
+- ...+ ..++..++..+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 71 1111 35788899999999999999999999999877654 3677888899999999999999999
Q ss_pred HH
Q 035503 732 MK 733 (788)
Q Consensus 732 ~~ 733 (788)
.+
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-06 Score=89.35 Aligned_cols=201 Identities=8% Similarity=-0.045 Sum_probs=128.1
Q ss_pred HHHHHHHHhcc---cCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 035503 384 DNAKQVFNSII---LRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQ 460 (788)
Q Consensus 384 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 460 (788)
+.+..+|+++. ..+...|...+..+.+.|+.++|..+|++.... |+...... .|....+.++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHH
Confidence 34556666664 335677888888888899999999999999887 44332211 22222111111 22221
Q ss_pred hCC---------CCC---ChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-cCchHHHHHHHH
Q 035503 461 SLG---------VQP---NLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTD-VASLRNGRAIHG 527 (788)
Q Consensus 461 ~~g---------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~ 527 (788)
+.- ..+ ....|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 001 1244666666666778888899999888 32 12344444332222222 336888999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
.+++..+ .++..+...++...+.|+.+.|..+|+.+.+ ....|...+..-...|+.+.+.++++++..
T Consensus 345 ~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888765 4455666778888888999999999988843 466788888777778888888888887664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-07 Score=88.19 Aligned_cols=173 Identities=8% Similarity=-0.123 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCC----CHHHHHHHHHHHH
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS-KELPVYNAMISGYAMHG----LAVEALALFKNLQ 596 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~ 596 (788)
|...++++.+. .++..+..++.+|...+++++|+..|++..+ .++.++..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44555555554 3456677777777777888888888876543 455677777777777 6 8899999999887
Q ss_pred HcCCCCCHhHHHHHHHHhhc----cCcHHHHHHHHHhcHhhcCCCCC---cchHHHHHHHHhh----cCChHHHHHHHHh
Q 035503 597 QKGIDPDSITFTNILNACSH----AGLVNEGLELFVGMFSDHQVKPS---MEHFGCVVNLLSR----CGNLDEALRVILT 665 (788)
Q Consensus 597 ~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 665 (788)
+.| +...+..|...|.. .+++++|+++|++.. ...|. +..+..|+.+|.. .++.++|..+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 56667777777776 789999999999886 33443 6778888888888 7889999999988
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 035503 666 MP-CDPDAHIIGSLLSTCVKS-N-----ETELAEYISEHLLQLEPD 704 (788)
Q Consensus 666 ~~-~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~ 704 (788)
+. ..++...+..++..|... | +.++|+..++++.+....
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 83 335566778888887643 3 899999999999887543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-08 Score=94.73 Aligned_cols=194 Identities=10% Similarity=-0.081 Sum_probs=119.8
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHH-------HHHHHHcCCHHHHHHHHhhCCCCCh------------------
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSL-------VDMYAKCGNIHQAKRVFDISPSKEL------------------ 569 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 569 (788)
..++...|.+.|.++++.+| .....|..+ ...+.+.++..+++..+.......+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 45677777777777777776 556666655 4555555555555555544333111
Q ss_pred ------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC--cc
Q 035503 570 ------PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS--ME 641 (788)
Q Consensus 570 ------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~ 641 (788)
..+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 12234556677777777777777776543 344334444444677777888887777655321 0 111 23
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CC--CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTMP-CD--PD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.+..++.++.+.|++++|+..|++.. .. |. ...+...+.++...|+.++|...|++++..+|+ +.++..|.+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 55677777777888888887777762 11 32 335666777777888888888888888888887 666555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=101.06 Aligned_cols=190 Identities=10% Similarity=-0.040 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhh
Q 035503 539 PIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACS 615 (788)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 615 (788)
..+..++..+...|++++|+..|+.... .+...|..+..+|...|++++|+..+++.++.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445555556666666666666654332 344556666666666666666666666655532 224455566666666
Q ss_pred ccCcHHHHHHHHHhcHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 035503 616 HAGLVNEGLELFVGMFSDHQVKPSM-EHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYI 694 (788)
Q Consensus 616 ~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 694 (788)
..|++++|+..|+++.+.. |+. ..+...+....+..+...... .......++......+... ..|+.++|+..
T Consensus 84 ~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 6777777777666655321 211 111111111111111111111 1122223333333333322 26889999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhC-CCcHHHHHHHHHHHHC
Q 035503 695 SEHLLQLEPDNPGNYVALSNAYAAS-GRWNEVSQVRDIMKEK 735 (788)
Q Consensus 695 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 735 (788)
++++++.+|++......+..++.+. +++++|.++|+++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999998888878888777776 7788999999887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-06 Score=89.79 Aligned_cols=203 Identities=8% Similarity=-0.049 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH-HHHHhh
Q 035503 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA-KRVFDI 563 (788)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 563 (788)
+.+..+|++++.. .+-+...|...+.-+...|+.+.|..++++++.. | .+...+...+.. .+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~----~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLV----MDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHH----TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhh----cchhHHHHHHHHH
Confidence 3456788887764 3445667777777777888889999999998888 4 444444332221 111111 111111
Q ss_pred CC----------C--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-hhccCcHHHHHHHHHhc
Q 035503 564 SP----------S--KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA-CSHAGLVNEGLELFVGM 630 (788)
Q Consensus 564 ~~----------~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~ 630 (788)
.. . .....|...+..+.+.+..+.|..+|++. ... ..+...|...... +...++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 0 01135777777777788899999999988 321 2233444322222 22234688999999988
Q ss_pred HhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 631 FSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 631 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
.+.++- ++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++++
T Consensus 347 l~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 875422 23444566777788899999999999984 2466788888877888999999888888875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-08 Score=88.90 Aligned_cols=122 Identities=7% Similarity=0.089 Sum_probs=89.2
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCCH--
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLST-CVKSNET-- 688 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~-~~~~g~~-- 688 (788)
+...|++++|+..+++..... +.+...+..++..|...|++++|...++++ .. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 345667777777777665431 223566667777777777777777777776 22 2355677778887 7788888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
++|+..++++++.+|+++..+..++.+|...|++++|...++++.+..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=100.92 Aligned_cols=94 Identities=15% Similarity=0.035 Sum_probs=79.7
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++.+|.+.|++++|+..++++ .. +.+...|..++.+|...|++++|+..++++++++|+++.++..++.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56677888888888888888888777 22 34567889999999999999999999999999999999999999999999
Q ss_pred CCCcHHH-HHHHHHHHH
Q 035503 719 SGRWNEV-SQVRDIMKE 734 (788)
Q Consensus 719 ~g~~~~A-~~~~~~~~~ 734 (788)
.|++++| ...+++|..
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999 456666643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-07 Score=86.20 Aligned_cols=152 Identities=8% Similarity=-0.032 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL 619 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 619 (788)
.+..++..+...|++++|+..|+....++..+|..++.+|...|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 355678889999999999999999988888899999999999999999999999988864 3466788888889999999
Q ss_pred HHHHHHHHHhcHhhcCCC-------------CC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 035503 620 VNEGLELFVGMFSDHQVK-------------PS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVK 684 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~-------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 684 (788)
+++|+..|+++.+...-. |. ...+..++.+|.+.|++++|.+.++++ ...|+. .
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~ 155 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------R 155 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------G
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------c
Confidence 999999999987532111 11 267779999999999999999999887 455553 2
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 035503 685 SNETELAEYISEHLLQLEP 703 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p 703 (788)
.+..+.|...+++.....|
T Consensus 156 ~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp GGHHHHHHHHHHTTCCCCC
T ss_pred cchHHHHHHHHHhcccccc
Confidence 3445556555554444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.5e-08 Score=92.45 Aligned_cols=183 Identities=7% Similarity=-0.103 Sum_probs=142.9
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHH-------HHHHHhCCCHHHHHHHHHHHHHcCCCCCH---------------
Q 035503 550 KCGNIHQAKRVFDISPS---KELPVYNAM-------ISGYAMHGLAVEALALFKNLQQKGIDPDS--------------- 604 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------- 604 (788)
..++...|.+.|.++.. .....|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999998765 334588888 5677777777777777776443 33321
Q ss_pred -------hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH----H
Q 035503 605 -------ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDA----H 673 (788)
Q Consensus 605 -------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 673 (788)
.....+...+...|++++|.+.|+.+.. ..|+......++..+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223355668899999999999998863 3465446667888999999999999999987544433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLE--PD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
.+..++.++...|++++|+..|+++.... |. .+...+.++.++.++|+.++|...|+++....+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 68888999999999999999999998643 55 556889999999999999999999999988764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=85.21 Aligned_cols=126 Identities=7% Similarity=-0.023 Sum_probs=85.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVK 684 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 684 (788)
+..+...+...|++++|...|+++.... +.+...+..++.++...|++++|++.++++ . .+.+...|..++.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3334444555555555555555554321 122445555566666666666666666555 1 22345678888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhCCCcHHHHHHHHHHHH
Q 035503 685 SNETELAEYISEHLLQLEPDNPGNYVALSN--AYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 734 (788)
.|++++|+..++++++.+|+++..+..++. .+...|++++|...++....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998888855544 48889999999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=81.22 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=74.2
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLST 681 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 681 (788)
..+..+...+...|++++|+..|+++.. ..| +...+..++.+|...|++++|++.++++ . .+.+...+..++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344444445555555555555555442 222 2344445555555555555555555554 1 12345677788888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR 721 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 721 (788)
+...|++++|+..++++++.+|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999988899999988887764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-08 Score=82.47 Aligned_cols=97 Identities=16% Similarity=-0.006 Sum_probs=83.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++..+.+.|++++|+..++++ ... .+...|..++.++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556778888999999999999888 333 4677899999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHCCC
Q 035503 719 SGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~~~ 737 (788)
.|++++|...++++++..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999887653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=80.71 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=81.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++..+.+.|++++|++.|+++ . .+.+...|..++.++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45556777778888888888888776 2 233567888999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHCC
Q 035503 719 SGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~~ 736 (788)
.|++++|...+++.++..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 999999999999988764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-06 Score=85.08 Aligned_cols=158 Identities=12% Similarity=-0.037 Sum_probs=117.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCC---Chh------hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----HhHHHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPSK---ELP------VYNAMISGYAMHGLAVEALALFKNLQQKGID-PD----SITFTN 609 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 609 (788)
.+..+...|++++|...++..... +.. .+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778888899998888765431 111 2335777777888999999999998874322 22 235888
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcC----CCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHHHH
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQ----VKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-------CDPD-AHIIG 676 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 676 (788)
+..+|...|++++|+.+|+++++... ..+. ..++..++..|.+.|++++|+++++++- ..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999999874321 1111 3467799999999999999999988771 1122 56888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 035503 677 SLLSTCVKSN-ETELAEYISEHLLQL 701 (788)
Q Consensus 677 ~l~~~~~~~g-~~~~A~~~~~~~~~~ 701 (788)
.++.++...| ++++|+..+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 579999999999874
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=80.50 Aligned_cols=117 Identities=14% Similarity=0.003 Sum_probs=81.3
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTC 682 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 682 (788)
..+..+...+...|++++|+..|+++.... +.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 334444455555666666666666554321 123445556666666666666666666555 1 223456788888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcH
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 723 (788)
...|++++|+..++++++.+|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=81.65 Aligned_cols=65 Identities=14% Similarity=-0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQL-------EPDNPGNY----VALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..|.+++.++...|++++|+..+++++++ +|+++..| +.++.++...|++++|+..|++.++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 48999999999999999999999999999 99999999 9999999999999999999999987643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-07 Score=78.16 Aligned_cols=114 Identities=21% Similarity=0.194 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTC 682 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 682 (788)
..+..+...+...|++++|.++++++.... +.+...+..++..+.+.|++++|..+++++. .+.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344444455555555555555555554321 1224445555666666666666666665551 223456778888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
...|++++|+..++++++.+|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999998888887654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=77.68 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=84.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD--NPGNYVALSNA 715 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 715 (788)
...+..++..+.+.|++++|...++++ . .+.+...|..++..+...|++++|+..++++++.+|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 456667788888888888888888776 2 2345678888999999999999999999999999999 99999999999
Q ss_pred HHhC-CCcHHHHHHHHHHHHCCCc
Q 035503 716 YAAS-GRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 716 ~~~~-g~~~~A~~~~~~~~~~~~~ 738 (788)
|... |++++|.+.++++....+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999999877643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=80.59 Aligned_cols=94 Identities=7% Similarity=-0.019 Sum_probs=72.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG-------NYVAL 712 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 712 (788)
.+..++..+.+.|++++|++.|+++ ... .+...|..++.+|...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3456677777777777777777776 223 34567888888888888888888888888888887643 67778
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHC
Q 035503 713 SNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
|.+|...|++++|++.|++.++.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888889999999988887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.4e-07 Score=88.97 Aligned_cols=161 Identities=11% Similarity=-0.048 Sum_probs=109.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--HhH
Q 035503 541 VTSLVDMYAKCGNIHQAKRVFDISPS---KEL------PVYNAMISGYAMHGLAVEALALFKNLQQKGI---DPD--SIT 606 (788)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~ 606 (788)
+...+..+...|++++|.+.++...+ ... ..+..+...+...|++++|+..+++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455666777777777777653321 111 1234456667778888888888888765321 111 346
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-C------CC-CHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCGNLDEALRVILTMP-C------DP-DAH 673 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~p-~~~ 673 (788)
+..+...|...|++++|+.+|+++.......|+ ..++..++..|.+.|++++|+++++++- . .. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777777888888888888888887633222232 1467788888889999999988887761 1 11 156
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 035503 674 IIGSLLSTCVKSNETELA-EYISEHLLQL 701 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 701 (788)
++..++..|...|++++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888899999999999 7778888763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.7e-07 Score=84.93 Aligned_cols=156 Identities=16% Similarity=0.081 Sum_probs=74.8
Q ss_pred HcCCHHHHHH---HHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHhhccCcHH
Q 035503 550 KCGNIHQAKR---VFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQK----GIDP-DSITFTNILNACSHAGLVN 621 (788)
Q Consensus 550 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~ 621 (788)
..|++++|.+ .+...+.....++..+...+...|++++|+..+++..+. +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223345555555666666666666666554441 1111 1233444444455555555
Q ss_pred HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDP--DAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
+|...+++......-.++ .| ....+..++..+...|++++|+..+++++
T Consensus 84 ~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPE-----------------------------DPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCC-----------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc-----------------------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555555544332111110 11 11234555555666666666666666665
Q ss_pred hcCCC--C----CchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 700 QLEPD--N----PGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 700 ~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
+..+. + ..++..++.+|...|++++|...+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 54222 1 12345666667777777777666666544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=79.19 Aligned_cols=99 Identities=13% Similarity=-0.064 Sum_probs=84.4
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 639 SMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
+...+..++..+...|++++|...++++ . .+.+...|..++..+...|++++|+..++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566677778888888888888887776 2 2334678889999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHCCC
Q 035503 717 AASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 717 ~~~g~~~~A~~~~~~~~~~~~ 737 (788)
...|++++|...++++.+..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999999987653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=83.41 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=75.8
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHH
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLL 679 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~ 679 (788)
+...+..+...+...|++++|+..|+++++. .| +...+..++.+|.+.|++++|+..++++ ... .+...|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455666667777888888888888877643 34 3566667777777777777777777776 222 3456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
.++...|++++|+..++++++++|+++..+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 77777777777777777777777777776555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=82.84 Aligned_cols=104 Identities=11% Similarity=-0.026 Sum_probs=74.8
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLST 681 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 681 (788)
..+..+...+...|++++|+..|++++.. .| +...+..++.+|.+.|++++|++.++++ .. +.+...+..++.+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 44555556667777777777777776532 34 3555667777777777777777777776 22 2345678888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 682 CVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 682 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
+...|++++|+..++++++++|+++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999999999999999999999988776443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=81.49 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=60.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTC 682 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 682 (788)
.+..+...+.+.|++++|+..|++++. +.|+ ...+..++.+|.+.|++++|++.|+++ ... .++..|..++.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 344444455555555555555555542 2333 444455556666666666666665555 122 2355777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 683 VKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
...|++++|+..|++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888743
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-07 Score=85.17 Aligned_cols=171 Identities=9% Similarity=-0.051 Sum_probs=100.7
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHH
Q 035503 545 VDMYAKCGNIHQAKRVFDISPSK---ELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVN 621 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 621 (788)
+......|+++++.+.++..... ....+..+...+...|++++|+..|++.+... |+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHH
Confidence 33444555666666655533221 22356667777777777777777777776642 221100000 000
Q ss_pred HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035503 622 EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLL 699 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 699 (788)
.-. ..+ ....+..++.+|.+.|++++|+..++++ . .+.+...+..++.++...|++++|+..+++++
T Consensus 81 ~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 000 1245567777788888888888887776 2 23456788899999999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhCCCcHHHH-HHHHHHHHCC
Q 035503 700 QLEPDNPGNYVALSNAYAASGRWNEVS-QVRDIMKEKG 736 (788)
Q Consensus 700 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 736 (788)
+++|+++.++..++.++...|+.+++. ..++.|...+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999888887 5566665554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-05 Score=78.11 Aligned_cols=226 Identities=10% Similarity=0.060 Sum_probs=129.3
Q ss_pred CCCchHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc-C-CHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPS-TTTITCALSACTDVA-SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKC-G-NIHQ 556 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 556 (788)
.+..++|++++++++.. .|+ ...++.-...+...+ .++++...++.++...| .+..+|+.-..++... + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 33445666666666653 343 334444444444555 46677777777776666 5566666666666655 5 6677
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc------
Q 035503 557 AKRVFDISPSK---ELPVYNAMISGYAMHGLAV--------EALALFKNLQQKGIDPDSITFTNILNACSHAGL------ 619 (788)
Q Consensus 557 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------ 619 (788)
++++++.+.+. +..+|+.-..++.+.|+++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 77777766653 3445655444444444444 7888888888764 3366677777666666665
Q ss_pred -HHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCCh--------------------HHHHHHHHhCC-C-------C
Q 035503 620 -VNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNL--------------------DEALRVILTMP-C-------D 669 (788)
Q Consensus 620 -~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~-------~ 669 (788)
++++++.+++++.. .|+ ...+..+...+.+.|+. .+..++..++. . .
T Consensus 223 ~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 223 SLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 67778888777642 344 45555555666655543 23333333331 1 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHH
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLL-QLEPDNPGNYVALS 713 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 713 (788)
+.+..+..++..|...|+.++|.++++.+. +.||-....|...+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 344556666666666666666776666665 45666555544443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.4e-07 Score=75.49 Aligned_cols=95 Identities=16% Similarity=0.109 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
.+..++..+...|++++|...++++ . .+.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444555555556666665555554 1 1224455666666666666666666666666666666666666666666666
Q ss_pred CCcHHHHHHHHHHHHCC
Q 035503 720 GRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 720 g~~~~A~~~~~~~~~~~ 736 (788)
|++++|...+++..+..
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 66666666666665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.7e-07 Score=82.09 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=98.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH-HhhcCCh--
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL-LSRCGNL-- 656 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 656 (788)
...|++++|+..+++..... +.+...+..+..+|...|++++|+..|+++.... +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888887754 3466778888888899999999999999887532 2245667788888 7788998
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 657 DEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 657 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
++|...++++ ... .+...+..++..+...|++++|+..++++++.+|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999998887 233 34678889999999999999999999999999999866543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=5e-07 Score=77.16 Aligned_cols=97 Identities=20% Similarity=0.132 Sum_probs=88.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
...+..++..+.+.|++++|.+.++++ ...| +...+..++..+...|++++|+..++++++.+|+++.++..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 566778999999999999999999987 3434 67789999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
..|++++|...+++..+..
T Consensus 96 ~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHhC
Confidence 9999999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=76.33 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=63.1
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHH
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSL 678 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l 678 (788)
..+..+...+...|++++|+..|+++. ...|+ ...+..++..|...|++++|+..++++ .. +.+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444445555555555555443 22333 334445555555555555555555544 11 2244566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 679 LSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 679 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
+.++...|++++|+..++++++++|+++..+..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 7777777778888888888887777777776666665443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.2e-07 Score=77.54 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=89.2
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 035503 639 SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713 (788)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 713 (788)
+...+..++..+.+.|++++|.+.++++ ...|+ ...|..++..+...|++++|+..++++++.+|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3566778899999999999999999988 55666 578889999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHCC
Q 035503 714 NAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 714 ~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999998764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-06 Score=72.85 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=72.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCV 683 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 683 (788)
.+..+...+...|++++|+..|+++.... +.+...+..++..+.+.|++++|...++++ .. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444445555566666666665554321 123445555666666666666666666555 12 234567888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
..|++++|+..++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999988888877764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-06 Score=82.07 Aligned_cols=215 Identities=11% Similarity=0.056 Sum_probs=159.8
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHhC-C-CHHHHHH
Q 035503 517 ASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG-NIHQAKRVFDISPS---KELPVYNAMISGYAMH-G-LAVEALA 590 (788)
Q Consensus 517 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-g-~~~~A~~ 590 (788)
+..++|..+.+.++..+| .+..+|+.-...+...| .+++++..++.+.. ++..+|+.-..++... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345679999999999998 67788888888888888 59999999987764 5556888777777665 6 8899999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHhhccCcHH--------HHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC-------
Q 035503 591 LFKNLQQKGIDPDSITFTNILNACSHAGLVN--------EGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN------- 655 (788)
Q Consensus 591 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 655 (788)
+++++.+.. +-|...|..-..++.+.|.++ ++++.++++++.. .-+...++....++.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 999998764 336777777666666666666 8999999998642 3356777777788877776
Q ss_pred hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCCc
Q 035503 656 LDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNET--------------------ELAEYISEHLLQLE------PDNPG 707 (788)
Q Consensus 656 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~ 707 (788)
+++++++++++ . .+.|...|+.+...+...|+. ..-......+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68899998877 2 345677898888887766653 33333333333332 45677
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
++..|+++|.+.|+.++|.++++.+.++
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8889999999999999999999998654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=8.5e-07 Score=87.19 Aligned_cols=189 Identities=10% Similarity=-0.004 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 035503 503 TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGY 579 (788)
Q Consensus 503 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 579 (788)
...+..+...+...|++++|...++.+++..+ .+...+..++.+|.+.|++++|+..++.... .+...+..++.+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34445555556666666666666666666655 4666777788888888888888888876554 3445777888888
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDS-ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 658 (788)
...|++++|+..|++..+.. |+. ..+...+..... ..++.... .. ......++......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWN-SI-EERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHH-HH-HHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHH-HH-HHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 88888888888888877642 211 111111111111 11111111 12 1114444555544554433 688888
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 035503 659 ALRVILTM-PCDPDAH-IIGSLLSTCVKS-NETELAEYISEHLLQL 701 (788)
Q Consensus 659 A~~~~~~~-~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 701 (788)
|++.++++ ...|+.. ....+...+... +.+++|..+++++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888776 4556543 334444444444 6788899999888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.1e-07 Score=79.49 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...|..++.+|...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++.++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 35788888899999999999999999999999999999999999999999999999999988764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=9.2e-07 Score=74.40 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=87.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
...+..++..+.+.|++++|.+.++++. .+.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567788999999999999999998872 33456788999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-05 Score=77.59 Aligned_cols=190 Identities=11% Similarity=0.007 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC--HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC-HHHHHHHH
Q 035503 519 LRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN--IHQAKRVFDISPS---KELPVYNAMISGYAMHGL-AVEALALF 592 (788)
Q Consensus 519 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~A~~~~ 592 (788)
++++..+++.++..+| .+..+|+.-..++...|+ +++++.+++.+.+ .|..+|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566677777777666 566666666666666663 6777777766554 445566666666666666 47777777
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhhcc--------------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhc----
Q 035503 593 KNLQQKGIDPDSITFTNILNACSHA--------------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRC---- 653 (788)
Q Consensus 593 ~~m~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---- 653 (788)
+++++.. +-|...|+.....+... +.++++++.++.++.. .|+ ...+..+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 7777754 23555555554443333 4466666666666532 343 34444333333333
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 654 -------GNLDEALRVILTM-PCDPDAHIIGSLLSTC-----VKSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 654 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.+++++||....-|..+..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3455666666655 334443 232222211 12455666666777777777766555555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.8e-07 Score=75.25 Aligned_cols=110 Identities=8% Similarity=-0.078 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTC 682 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 682 (788)
.+..+...+...|++++|+..|+++++. .| +...+..++.+|.+.|++++|+..++++ ... .+...|..++.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444444555566666666666655432 23 2455556666666666666666666655 222 3456788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHh
Q 035503 683 VKSNETELAEYISEHLLQLE------PDNPGNYVALSNAYAA 718 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 718 (788)
...|++++|+..++++++++ |+++.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 89999999999999999998 8877777777666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-07 Score=76.91 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=68.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM-PCDPD-A---HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN---PGNYVALSNA 715 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 715 (788)
..++..+.+.|++++|.+.++++ ...|+ . ..+..++.++...|++++|+..++++++.+|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556666777777777777665 11222 2 467777778888888888888888888888887 6678888888
Q ss_pred HHhCCCcHHHHHHHHHHHHCC
Q 035503 716 YAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 716 ~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=78.68 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=51.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++..+.+.|++++|++.|+++ .. +.+...|..++.+|...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445555555555555555555554 11 22344555555555555555555555555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHC
Q 035503 719 SGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 719 ~g~~~~A~~~~~~~~~~ 735 (788)
.|++++|...+++.++.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 55555555555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-05 Score=78.65 Aligned_cols=180 Identities=11% Similarity=-0.011 Sum_probs=132.9
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc-HHHHHHHH
Q 035503 554 IHQAKRVFDISPS---KELPVYNAMISGYAMHG--LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL-VNEGLELF 627 (788)
Q Consensus 554 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~ 627 (788)
+++++.+++.+.. ++..+|+.-..++...| .+++++.+++++.+.. +-|...|..-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777776543 56678888777888888 4899999999999975 3477788877777778888 68999999
Q ss_pred HhcHhhcCCCCCcchHHHHHHHHhhc--------------CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc------
Q 035503 628 VGMFSDHQVKPSMEHFGCVVNLLSRC--------------GNLDEALRVILTM--PCDPDAHIIGSLLSTCVKS------ 685 (788)
Q Consensus 628 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~------ 685 (788)
++++... +-+...++....++.+. +.++++++++.++ ..+.|...|+-+...+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998642 33456666655555544 4588899998887 2445677888776666555
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhCCCcHHHHHHHHHHHHCC
Q 035503 686 -----NETELAEYISEHLLQLEPDNPGNYVALSNAY---AASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 686 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.+++++..++++++++|++.-.+..++.+. ...|..++....+.++.+..
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4579999999999999999855544444332 24678888889999887754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.45 E-value=9.1e-07 Score=93.75 Aligned_cols=144 Identities=13% Similarity=0.034 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
..|..+...+.+.|++++|+..|++.++.. |+...+ . .+...+ ... -....|..++.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~~ 326 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKA-SES--------FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHH-HHH--------HHHHHHHHHHHH
Confidence 466777778888888888888888776642 221100 0 000000 000 013466778888
Q ss_pred HhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 650 LSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
|.+.|++++|+..++++ .. +.+...|..++.+|...|++++|+..|+++++++|++..++..++.++.+.|++++|.+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877 22 33567899999999999999999999999999999999999999999999999998875
Q ss_pred -HHHHHHHC
Q 035503 728 -VRDIMKEK 735 (788)
Q Consensus 728 -~~~~~~~~ 735 (788)
.+++|..+
T Consensus 407 ~~~~~~f~k 415 (457)
T 1kt0_A 407 RIYANMFKK 415 (457)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 46666544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=7.2e-07 Score=77.36 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=68.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCV 683 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 683 (788)
+..+...+...|++++|+..|++++.. .| +...+..++.+|.+.|++++|+..++++ . .+.+...+..++.++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334444555666666666666655532 23 2444556666666666666666666655 1 1234556778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSN 714 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 714 (788)
..|++++|+..++++++++|+++........
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 8999999999999999999988777655433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-06 Score=79.14 Aligned_cols=95 Identities=16% Similarity=0.064 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC--
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPS---------KELPVYNAMISGYAMHGLAVEALALFKNLQQK----GIDP-- 602 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-- 602 (788)
..++..++..|...|++++|...+++... ....++..+...+...|++++|+..+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 44555555666666666666665553322 11235677778888888888888888876553 1011
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
....+..+...+...|++++|...+++...
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123455666677778888888888777653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=74.01 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=87.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456678889999999999999999987 2 33467788999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHCC
Q 035503 718 ASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 718 ~~g~~~~A~~~~~~~~~~~ 736 (788)
..|++++|...+++..+..
T Consensus 92 ~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 9999999999999998764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-06 Score=75.14 Aligned_cols=127 Identities=16% Similarity=0.038 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
.|..++..+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.... +.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 46667777778888888888888877653 3356667777777888888888888888776431 23356677888888
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 651 SRCGNLDEALRVILTM-PCDP-DAHIIG--SLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
.+.|++++|.+.++++ ...| +...+. ..+..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888776 2222 334443 333446677888888888887654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-06 Score=90.42 Aligned_cols=163 Identities=7% Similarity=-0.139 Sum_probs=111.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCH----hHHHHHHHHhhccCcHHHHHHHHHhcHhhc---CCCCC-cch
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKG-IDPDS----ITFTNILNACSHAGLVNEGLELFVGMFSDH---QVKPS-MEH 642 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~ 642 (788)
+..++..|...|++++|.+++.++...- ..++. .....+...+...|++++|..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567777777888888877777755421 11222 122333334566788888888887765422 22222 456
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----C-C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C----Cc
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM----P-C--DPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD---N----PG 707 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~----~-~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~----~~ 707 (788)
+..++..|...|++++|..+++++ . . ++. ..++..++..|...|++++|...+++++...+. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 668888999999999999888776 1 1 122 346788888899999999999999998876432 2 24
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
.+..++.++...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566778888899999999988877754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.9e-07 Score=92.27 Aligned_cols=149 Identities=8% Similarity=-0.072 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
..|..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 45777888888899999999999998774 354332 334455555543331 1367789999
Q ss_pred HhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHhCCCcHHHH
Q 035503 650 LSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA-YAASGRWNEVS 726 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~ 726 (788)
|.+.|++++|+..++++ ... .+...|..++.+|...|++++|+..++++++++|+++.++..|+.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 333 3567899999999999999999999999999999999999999988 45567788888
Q ss_pred HHHHHHHHCCCc
Q 035503 727 QVRDIMKEKGLR 738 (788)
Q Consensus 727 ~~~~~~~~~~~~ 738 (788)
..|++|....+.
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 899988776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-07 Score=77.87 Aligned_cols=84 Identities=17% Similarity=0.046 Sum_probs=58.3
Q ss_pred cCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 653 CGNLDEALRVILTM-PC---DPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
.|++++|+..|+++ .. .|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666555 22 132 34677777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHCC
Q 035503 728 VRDIMKEKG 736 (788)
Q Consensus 728 ~~~~~~~~~ 736 (788)
.+++.++..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888776653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-06 Score=73.08 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNL 649 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 649 (788)
++..++..+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.++++++. .|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~--- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI--- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH---
Confidence 45556666666666666666666666542 223455555555666666666666666655432 111 1111111
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..++..++.++...|++++|+..|+++++..|+
T Consensus 83 ----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 135666777788888889999999988888876
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=5.6e-07 Score=77.29 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=55.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-PC-------DPDA-HII----GSLLSTCVKSNETELAEYISEHLLQLEPDNPGN 708 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 708 (788)
.|..++.++.+.|++++|+..++++ .. .|+. ..| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5556666666666666666666555 22 6654 578 899999999999999999999999999998877
Q ss_pred HHHHHH
Q 035503 709 YVALSN 714 (788)
Q Consensus 709 ~~~l~~ 714 (788)
+.-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-06 Score=73.74 Aligned_cols=112 Identities=10% Similarity=-0.086 Sum_probs=72.2
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLL 679 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~ 679 (788)
+...+..+...+...|++++|+..|++++.. .|+ ...+..++.++...|++++|...++++ . .+.+...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3455555555666666666666666665532 232 455556666666666666666666665 1 223456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHH
Q 035503 680 STCVKSNETELAEYISEHLLQLEPD-----NPGNYVALSNAYA 717 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 717 (788)
.++...|++++|+..++++++++|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999988887 4555555544433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=73.93 Aligned_cols=94 Identities=11% Similarity=0.131 Sum_probs=63.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN-------PGNYVAL 712 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l 712 (788)
.+..++..+...|++++|...++++ . .+.+...+..++..+...|++++|+..++++++..|++ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3445555666666666666666555 1 22345566667777777777777777777777776665 6677777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHC
Q 035503 713 SNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 713 ~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
+.+|...|++++|...++++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777777664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=93.35 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=87.1
Q ss_pred HHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 035503 612 NACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNET 688 (788)
Q Consensus 612 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 688 (788)
..+.+.|++++|++.|+++++. .|+ ...+..++.+|.+.|++++|++.++++ ... .+...|..++.+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455667777777777777643 343 566667777777777777777777776 233 3466888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHhCCCcHHHHHHHHH
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNA--YAASGRWNEVSQVRDI 731 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 731 (788)
++|+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8889999999998873
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=5.9e-06 Score=87.83 Aligned_cols=115 Identities=16% Similarity=0.058 Sum_probs=57.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCCh
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNL 656 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 656 (788)
.+.+.|++++|++.|++.++.. +.+...+..+..++.+.|++++|+..++++++ +.|+ ...+..++.+|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 3445566666666666655542 22345555555556666666666666665543 2333 44555566666666666
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 035503 657 DEALRVILTM-PCDP-DAHIIGSLLST--CVKSNETELAEYISE 696 (788)
Q Consensus 657 ~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 696 (788)
++|++.++++ ...| +...+..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666554 1111 12233333333 555566666666666
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=76.72 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPD------NPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..+..++..+...|++++|+..++++++..+. ....+..++.+|...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35666777778888888888888888765322 2456788888999999999999998887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.1e-06 Score=70.96 Aligned_cols=105 Identities=12% Similarity=0.049 Sum_probs=68.1
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCCc----chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSM----EHFGCVVNLLSRCGNLDEALRVILTM-PCDPD----AHIIGSLLS 680 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 680 (788)
+...+...|++++|+..|+++.+.. |+. ..+..++.++.+.|++++|...++++ ...|+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3344555666666666666655432 222 34556666666666666666666665 12222 456777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
++...|++++|+..++++++..|+++........+-.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 8889999999999999999999998766655554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-06 Score=87.50 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVN 648 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 648 (788)
..|..+...+.+.|++++|+..|++.++.- ++.. ..... +... ...| +...|..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 356677777888888888888888766520 1000 00001 1110 1222 2467778889
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 649 LLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 649 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
+|.+.|++++|++.++++ ...| +...+..++.+|...|++++|+..++++++++|++..++..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4444 46788999999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 035503 727 QV 728 (788)
Q Consensus 727 ~~ 728 (788)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.5e-05 Score=83.38 Aligned_cols=136 Identities=7% Similarity=-0.015 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccC--cHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcC-ChHHHH
Q 035503 585 AVEALALFKNLQQKGIDPDSITFTNILNACSHAG--LVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCG-NLDEAL 660 (788)
Q Consensus 585 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~ 660 (788)
++++++.++++.+.. +-+..+|..-..++.+.| +++++++.++++++. .| +...|..-..++.+.| ..++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHH
Confidence 455555555555542 224445555555555555 446666666665532 22 2444444455555555 566666
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHH
Q 035503 661 RVILTM-PCD-PDAHIIGSLLSTCVKS--------------NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724 (788)
Q Consensus 661 ~~~~~~-~~~-p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 724 (788)
++++++ ... -+..+|+....++... +.++++++.+++++..+|++..+|..+.+++.+.++.++
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 666665 222 3455666666555442 567999999999999999999999999999999998665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-06 Score=70.33 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=60.0
Q ss_pred HHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 035503 608 TNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVK 684 (788)
Q Consensus 608 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 684 (788)
..+...+.+.|++++|+..|+++++. .| +...+..++.++.+.|++++|+..++++ ...| +...|..++.++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444556666666666666666532 33 3455556666666666666666666665 2233 45677788888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC
Q 035503 685 SNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 685 ~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8889999999999998888754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=77.17 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=63.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP-GNYVALSNAY 716 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 716 (788)
...+..++.+|.+.|++++|+..++++ .. +.+...|..++.++...|++++|+..++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456778888888888998888888877 23 33567889999999999999999999999999999987 5566665554
Q ss_pred HhC
Q 035503 717 AAS 719 (788)
Q Consensus 717 ~~~ 719 (788)
.+.
T Consensus 143 ~~~ 145 (162)
T 3rkv_A 143 ERR 145 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.5e-06 Score=82.75 Aligned_cols=127 Identities=8% Similarity=-0.022 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--------------HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCC
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPD--------------SITFTNILNACSHAGLVNEGLELFVGMFSDHQV 636 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 636 (788)
.|..+...+.+.|++++|+..|++.++...... ...+..+..++.+.|++++|+..|+++++.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 455666666666777777777776666431111 366777777777888888888888877643
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 035503 637 KP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELA-EYISEHLLQ 700 (788)
Q Consensus 637 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 700 (788)
.| +...+..++.+|...|++++|+..|+++ ...| +...+..+..++...|+.++| ...+++++.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 3566777788888888888888887776 2233 456777788888888888877 446666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=6.8e-06 Score=69.64 Aligned_cols=47 Identities=13% Similarity=-0.003 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
...+..++.++...|++++|+..++++++..| ++.....+..+....
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 45677788888889999999999999999888 477777776665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=5.5e-06 Score=76.56 Aligned_cols=94 Identities=13% Similarity=-0.003 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----CCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM----PCDP--------------DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+..++..+.+.|++++|++.|+++ +..| ....+..++.++...|++++|+..++++++.+|+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 334455555555555555555544 1111 1367888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 705 NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 705 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++.++..++.+|...|++++|...+++.++..
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999998764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.7e-06 Score=66.98 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDP---DAHIIGSLLST 681 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 681 (788)
.+..+...+...|++++|+..|+++.+.. +.+...+..++.++...|++++|.+.++++ ...| +...|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34444445555555555555555554321 122444555666666666666666666555 2222 45677777888
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCC
Q 035503 682 CVKS-NETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 682 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 706 (788)
+... |++++|+..++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.18 E-value=6.5e-06 Score=66.00 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+...|..++..+...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++.++..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999987653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=72.53 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=66.6
Q ss_pred cCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEY 693 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~ 693 (788)
.|++++|+..|+++++...-.|+ ...+..++.+|.+.|++++|++.++++ .. +.+...+..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777777776531000232 455667777777888888888877776 22 2345678888888999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHH
Q 035503 694 ISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 694 ~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
.++++++..|+++........+
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999987665443333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-06 Score=74.77 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=59.7
Q ss_pred cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 653 CGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNE----------TELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 653 ~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
.+.+++|++.+++. . .+.+...|..++.++...++ +++|+..|+++++++|++..+|+.++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34444555444444 1 12234455555555544443 569999999999999999999999999998875
Q ss_pred -----------CcHHHHHHHHHHHHCCC
Q 035503 721 -----------RWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 721 -----------~~~~A~~~~~~~~~~~~ 737 (788)
++++|.+.|+++++..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 89999999999988764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=8e-06 Score=86.04 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=89.8
Q ss_pred hhccCcHHHHHHHHHhcHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQ--VKPS----MEHFGCVVNLLSRCGNLDEALRVILTM---------PCDPDA-HIIGS 677 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 677 (788)
+...|++++|+.++++.+.... +.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456666666666666544321 1222 345567777777777777777776665 234554 46889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 678 LLSTCVKSNETELAEYISEHLLQ-----LEPDNPGN---YVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
|+..|..+|++++|+.+++++++ +.|++|.+ ...|..++.++|++++|..+++++++...+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987 46777665 457788899999999999999999886533
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-05 Score=81.49 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=16.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHhC
Q 035503 475 ISGLTQNSCGNEAILFFQEMLET 497 (788)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~ 497 (788)
...+...|++++|++.|.++++.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~ 33 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDK 33 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh
Confidence 34566778888888888877764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.6e-06 Score=72.84 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cch
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGID-PD----SITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEH 642 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~ 642 (788)
+..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|..+++++.....-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444555555556666666655554432100 11 124455555666666666666666665432211111 234
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTMP----CDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+..++..+...|++++|.+.++++- ..++ ...+..++..+...|++++|+..+++++++...
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777766651 1111 245677788888999999999999998876443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.7e-06 Score=68.95 Aligned_cols=91 Identities=16% Similarity=0.000 Sum_probs=74.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHH
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN------PGNYVA 711 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 711 (788)
...+..++..+.+.|++++|++.++++ . .+.+...|..++.++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455667777888888888888888776 2 23356788899999999999999999999999999998 778888
Q ss_pred HHHHHHhCCCcHHHHHHHH
Q 035503 712 LSNAYAASGRWNEVSQVRD 730 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~ 730 (788)
++.++...|++++|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 9999999888887776554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.3e-06 Score=67.42 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=64.9
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 658 EALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 658 ~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
+|++.++++ ... .+...|..++..+...|++++|+..++++++.+|+++..|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555544 223 356678888889999999999999999999999999999999999999999999999999988775
Q ss_pred C
Q 035503 736 G 736 (788)
Q Consensus 736 ~ 736 (788)
.
T Consensus 83 ~ 83 (115)
T 2kat_A 83 A 83 (115)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.4e-05 Score=82.71 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
..+|..++.+|...|++++|+..++++++++|+++.+|+.++.+|...|++++|...|+++++..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 468889999999999999999999999999999999999999999999999999999999988653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=62.08 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=59.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 641 EHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
..+..++..+.+.|++++|+..++++ . .+.+...+..++..+...|++++|+..++++++.+|+++.++..++.++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 44556666777777777777777665 2 223456777888888888888888888888888888888888888888776
Q ss_pred CC
Q 035503 719 SG 720 (788)
Q Consensus 719 ~g 720 (788)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-05 Score=80.07 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...|..++.+|...|++++|+..++++++++|+++.++..++.+|...|++++|...++++++..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999999999999999999999999998764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.8e-06 Score=81.90 Aligned_cols=152 Identities=9% Similarity=0.011 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA 617 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 617 (788)
...+..++..+.+.|++++|+..|+.....+.... .+...|+..++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34677889999999999999999987554221111 1223344444433221 13667788888999
Q ss_pred CcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHHH
Q 035503 618 GLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLST-CVKSNETELAEY 693 (788)
Q Consensus 618 g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~A~~ 693 (788)
|++++|+..++++++. .| +...+..++.+|...|++++|+..|+++ ...|+. ..+..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988753 35 4678889999999999999999999988 344543 455555555 345577888999
Q ss_pred HHHHHHhcCCCCCc
Q 035503 694 ISEHLLQLEPDNPG 707 (788)
Q Consensus 694 ~~~~~~~~~p~~~~ 707 (788)
.|.+++...|+++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999999998653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.6e-05 Score=60.88 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 669 DPDAHIIGSLLSTCVKSNE---TELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
++++..+..++.++...++ .++|...++++++.+|+++.++..++..+++.|++++|+.+++++++..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567788888888765544 799999999999999999999999999999999999999999999987653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=6.8e-05 Score=64.13 Aligned_cols=111 Identities=8% Similarity=-0.056 Sum_probs=71.2
Q ss_pred cHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 035503 619 LVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYI 694 (788)
Q Consensus 619 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 694 (788)
++++|+++|++..+. + +.... |+..|...+..++|.++|+++....++..+..++..|.. .+|+++|+..
T Consensus 10 d~~~A~~~~~~aa~~-g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N---EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455555555555432 2 11122 555555555555566666555333455666667766666 6778888888
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHh----CCCcHHHHHHHHHHHHCCC
Q 035503 695 SEHLLQLEPDNPGNYVALSNAYAA----SGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 695 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 737 (788)
++++.+. .++..+..|+.+|.. .++.++|..++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8887765 567778888888888 7888888888888877764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.1e-05 Score=63.31 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 671 DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 671 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+...|..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|...++++++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999999999999999999999999999999999999987653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0002 Score=77.52 Aligned_cols=154 Identities=12% Similarity=0.023 Sum_probs=124.3
Q ss_pred HhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCc----------HHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 580 AMHG-LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGL----------VNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 580 ~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
.+.| ..++|++.+++++..+ +-+...|+.-..++...|+ ++++++.++++++. .|. ..+|..-.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 3344 4467899999998864 2244556666666666666 89999999999854 354 67788888
Q ss_pred HHHhhcC--ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC---
Q 035503 648 NLLSRCG--NLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSN-ETELAEYISEHLLQLEPDNPGNYVALSNAYAAS--- 719 (788)
Q Consensus 648 ~~~~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--- 719 (788)
.++.+.| ++++|+++++++ . .+-+..+|+.-..++...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 8899999 779999999998 2 3456789999999998888 899999999999999999999999999998874
Q ss_pred -----------CCcHHHHHHHHHHHHCCC
Q 035503 720 -----------GRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 720 -----------g~~~~A~~~~~~~~~~~~ 737 (788)
++++++.+++++++...+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.8e-05 Score=81.95 Aligned_cols=116 Identities=12% Similarity=0.028 Sum_probs=91.0
Q ss_pred HHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---hH
Q 035503 648 NLLSRCGNLDEALRVILTM---------PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQL-----EPDNPG---NY 709 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~ 709 (788)
..+..+|++++|+.+++++ +..|+. .++++|+.+|...|++++|+.++++++++ .|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999998776 123443 47899999999999999999999999873 566554 68
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 035503 710 VALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVRL 781 (788)
Q Consensus 710 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (788)
.+|+.+|..+|++++|..++++.++..... -..+||.+.++...+.+...++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~------------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVT------------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987643211 124599999998888887765554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.80 E-value=7.2e-07 Score=88.83 Aligned_cols=199 Identities=10% Similarity=0.066 Sum_probs=114.5
Q ss_pred chhHhhHHHHHHhccCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcc
Q 035503 115 NEYVETKLVVFYAKCDALDVASRLFCRLRVKNVFSWAAIIGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGA 194 (788)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 194 (788)
.+.+|..|..+..+.+.+.+|++.|=+ ..|...|..+|.+..+.|.+++-+..+...++. .-++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHh
Confidence 455677777777777777777766643 335555677777777888887777776665543 2233444567777777
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCC------------------------CCCcch
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMI------------------------ARNVVA 250 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~ 250 (788)
.+++.+-.+... .||..-...+.+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 776655333221 3455445566666777777777777666552 124556
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhCC-CCchhHHHHHHHHHH
Q 035503 251 WNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVINGM-ELDNVLGSSIINFYS 329 (788)
Q Consensus 251 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 329 (788)
|..+-.+|...+.+.-|.-+--.++- .|| -+..++..|...|.+++...+++..+ |+ .....+++.|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 66666666666666555444333331 111 12234445555666666655555544 22 234445555555555
Q ss_pred hc
Q 035503 330 KV 331 (788)
Q Consensus 330 ~~ 331 (788)
+-
T Consensus 275 KY 276 (624)
T 3lvg_A 275 KF 276 (624)
T ss_dssp SS
T ss_pred hc
Confidence 54
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=2.1e-05 Score=67.42 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=55.9
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcH----------HHHHHHHHhcHhhcCCCCC-cchHHHHHHH
Q 035503 581 MHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLV----------NEGLELFVGMFSDHQVKPS-MEHFGCVVNL 649 (788)
Q Consensus 581 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 649 (788)
+.+.+++|++.+++..+.. +.+...+..+..++...+++ ++|+..|++++ .+.|+ ...|..++.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHHHH
Confidence 3445566666666655543 22455555555555555543 24444444444 22333 2334444444
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 650 LSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
|...|++ .|+.. ...|++++|+..|+++++++|++....
T Consensus 90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 4433322 12210 012689999999999999999975443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.76 E-value=7.5e-05 Score=58.25 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...+..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45788889999999999999999999999999999999999999999999999999999998764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00022 Score=60.88 Aligned_cols=111 Identities=8% Similarity=-0.127 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHH
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDE 658 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 658 (788)
+++++|+++|++..+.| .|+.. |...|...+.+++|+++|++..+. -++..+..|+.+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 56789999999998887 44444 666788888899999999998653 467788889999988 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 035503 659 ALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLE 702 (788)
Q Consensus 659 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 702 (788)
|.++++++....++..+..+...|.. .+|.++|+..++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998545678888899999988 899999999999998874
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=6.9e-05 Score=77.76 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=81.9
Q ss_pred HhhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---hHHH
Q 035503 650 LSRCGNLDEALRVILTM------PCDPD----AHIIGSLLSTCVKSNETELAEYISEHLLQL-----EPDNPG---NYVA 711 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~ 711 (788)
+.+.|++++|+++++++ ...|+ ..++++++.+|...|++++|+.+++++++. .|++|. .+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666655544 01122 246788888899999999999999988863 455544 6889
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHCCCccCCceeEEEECCeEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 035503 712 LSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCSWIQIGEELHVFVACDRSHPKTEEIYATLALLGMHVR 780 (788)
Q Consensus 712 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 780 (788)
|+.+|..+|++++|..+++++++.-.. .-..+||.+.+++..|.+....|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998764211 113459999999999998877765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.7e-05 Score=79.54 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---hHHHHHHHHHhCCCcHHHHHHHHHHHHCCCccCCcee
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQL-----EPDNPG---NYVALSNAYAASGRWNEVSQVRDIMKEKGLRKNPGCS 744 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 744 (788)
.++++++.+|...|++++|+.++++++++ .|++|. .+.+|+.+|..+|++++|..+++++++.-...
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~----- 415 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA----- 415 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH-----
Confidence 46788888888889999999998888863 455544 58889999999999999999999987643211
Q ss_pred EEEECCeEEEEEcCCCCCCChHHHHHHHH
Q 035503 745 WIQIGEELHVFVACDRSHPKTEEIYATLA 773 (788)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 773 (788)
-..+||.+.+++..|+
T Consensus 416 -------------lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 416 -------------HGKDHPYISEIKQEIE 431 (433)
T ss_dssp -------------TCTTCHHHHHHHHHHH
T ss_pred -------------cCCCChHHHHHHHHHh
Confidence 1245888887777665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00032 Score=59.29 Aligned_cols=67 Identities=9% Similarity=-0.031 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLE-P-DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++..+...+++++.+++ +.++|+.+++.+++.+ | ++.+.++.|+-.|++.|++++|.++++.+++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56667777777777766 5567777777777777 6 457777777777888888888888887777654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0002 Score=58.89 Aligned_cols=81 Identities=14% Similarity=-0.067 Sum_probs=56.3
Q ss_pred HHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035503 622 EGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHL 698 (788)
Q Consensus 622 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 698 (788)
+|+..|+++. ...|+ ...+..++..|.+.|++++|+..++++ .. +.+...|..++.++...|++++|+..++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455566554 33343 555667777777777777777777766 22 234567888888888889999999999998
Q ss_pred HhcCCCC
Q 035503 699 LQLEPDN 705 (788)
Q Consensus 699 ~~~~p~~ 705 (788)
+++.|++
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8887753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00021 Score=56.74 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 646 VVNLLSRCGNLDEALRVILTM-PCDP-DAH-IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
.+..+.+.|++++|++.++++ ...| +.. .|..++.++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445566666666666666665 2222 344 566666666666666666666666666666666555
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00089 Score=53.02 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhCCCcHHHHHHHHHHHHC
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDNPG-NYVALSNAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
..+...|++++|+..++++++.+|+++. .+..++.+|...|++++|...+++.++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3344455555555555555555555555 5555555555555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00087 Score=69.28 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=59.8
Q ss_pred cCcHHHHHHHHHhcHhhc--CCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 035503 617 AGLVNEGLELFVGMFSDH--QVKPS----MEHFGCVVNLLSRCGNLDEALRVILTM---------PCDPDA-HIIGSLLS 680 (788)
Q Consensus 617 ~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~ 680 (788)
.|++++|+.++++.+... -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .++++|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 345555555555544321 12222 244556666666666666666666554 234554 46888999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----cCCCCCchHH
Q 035503 681 TCVKSNETELAEYISEHLLQ-----LEPDNPGNYV 710 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 710 (788)
.|..+|++++|+.+++++++ +.|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999887 4677766543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00074 Score=53.68 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcH
Q 035503 569 LPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 569 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 631 (788)
...|..+..+|...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666666666666666665543 2234455555556666666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0052 Score=60.69 Aligned_cols=65 Identities=14% Similarity=-0.080 Sum_probs=33.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
+.+|..++..+...|++++|...++++ ...|+...|..++..+...|++++|++.+++++.++|.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 444444444444445555555555554 22344444444455555555555555555555555555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0025 Score=62.98 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 669 DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.++.++..+...+...|++++|+..++++++++|+ ...|..+++++.-.|++++|.+.+++.....+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 456677888887788889999999999999999975 778889999999999999999999999887653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=72.00 Aligned_cols=390 Identities=11% Similarity=0.080 Sum_probs=198.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhccCCCchhHHHHHHHHHHhCCCCCCchhHhhHHHHH
Q 035503 46 SYFHQISSLSKEKQIREAVDLLTEMKCRNFQIGPEIYGELLQGCVYKRDMYTGQQIHARILKNGDFFARNEYVETKLVVF 125 (788)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (788)
.|..|..+....+.+.+|++.| ++. -|+..|..++.++.+.|.+++-.+.+..+.+. ..++.+-+.|+-+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteLi~a 125 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFA 125 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHHHHH
Confidence 5888889988889999998876 332 36667889999999999998888888777654 3566777888888
Q ss_pred HhccCChHHHHHHhcc----------------------------CC------------------------CCCcccHHHH
Q 035503 126 YAKCDALDVASRLFCR----------------------------LR------------------------VKNVFSWAAI 153 (788)
Q Consensus 126 ~~~~g~~~~A~~~~~~----------------------------~~------------------------~~~~~~~~~l 153 (788)
|++.+++.+-.+.... ++ ..++.+|..+
T Consensus 126 yAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 126 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp HHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred HHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 8888776654333211 10 1133344444
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHhcccCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCCh
Q 035503 154 IGLNCRVGLSEKALIGFVEMQEDGVSPDNFVLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDL 233 (788)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 233 (788)
-.+|...+.+.-|.-.--.+.- .| .-...++.-|-..|.+++-..+++..+... ....-+++-|.-.|++- ++
T Consensus 206 ~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CH
Confidence 4444444444444333222221 11 112223334444455555555554443211 23455666666666665 33
Q ss_pred HHHHHHHhcCCCC-----------CcchHHHHHHHHHHCCChhHHHHHH-------------HHHHHcCCCCCHHHHHHH
Q 035503 234 EEARKVFDGMIAR-----------NVVAWNSMIVGYVQNGLNEEAIRVF-------------YEMTLEGVEPTRVSVTSI 289 (788)
Q Consensus 234 ~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~-------------~~m~~~g~~p~~~t~~~l 289 (788)
++-.+-++..-.+ ....|..++-.|.+...++.|.... .+... -..|...|...
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKA 356 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRA 356 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHH
Confidence 4444443333211 3457888888888777777664321 11111 12455555555
Q ss_pred HHHhcCcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhH
Q 035503 290 LSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVV 369 (788)
Q Consensus 290 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 369 (788)
+..|....- ..--.++.. +...+.+ +..++.+.+.|++.-....+..+...|... +
T Consensus 357 i~FYL~e~P-~lL~DLL~v-L~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~a-----------------V 412 (624)
T 3lvg_A 357 IQFYLEFKP-LLLNDLLMV-LSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKS-----------------V 412 (624)
T ss_dssp HHHHTTSCC-TTSHHHHHH-HCTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHH-----------------H
T ss_pred HHHHHHhCh-HHHHHHHHh-ccccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHH-----------------H
Confidence 555543211 000111111 0001111 122344445555555555555555544433 3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc------------cCChhHHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHH
Q 035503 370 ASSIVDMYAKCERIDNAKQVFNSII------------LRDVVLWN-TLLAAYADLGRSGEASRLFYQMQLEGISPNIISW 436 (788)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 436 (788)
-.++-+.|....+++.-....+... +.+..-|. .....|.+++++++++.+.++ ...|
T Consensus 413 NeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------Dkly 483 (624)
T 3lvg_A 413 NESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLY 483 (624)
T ss_dssp HHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccH
Confidence 3344444444444444333322221 12222232 233456666777777655432 1112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHH
Q 035503 437 NSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILF 490 (788)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 490 (788)
.-.|.....+|+.+-|.++++-..+.| +...|.+.+-.|...=+++-++++
T Consensus 484 kDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 484 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 222333455666666666666665544 455566666666666666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0019 Score=66.91 Aligned_cols=98 Identities=10% Similarity=-0.026 Sum_probs=64.3
Q ss_pred hhccCcHHHHHHHHHhcHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQ--VKPS----MEHFGCVVNLLSRCGNLDEALRVILTM---------PCDPDA-HIIGS 677 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 677 (788)
+...|++++|+.++++++.... +.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4455666666666666543211 2222 234556666777777777777766655 233444 46888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchHHH
Q 035503 678 LLSTCVKSNETELAEYISEHLLQ-----LEPDNPGNYVA 711 (788)
Q Consensus 678 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 711 (788)
|+..|..+|++++|+.+++++++ ..|++|.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 99999999999999999999887 46887766543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0025 Score=50.91 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=52.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTMP---------CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVAL 712 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 712 (788)
....|+..+.+.|+++.|..+++.+- ..+...++..++.++.+.|+++.|+..++++++++|+++.+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 33455555555666666655555540 123456788999999999999999999999999999998887666
Q ss_pred H
Q 035503 713 S 713 (788)
Q Consensus 713 ~ 713 (788)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0018 Score=61.06 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=71.4
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhC-CCcHH
Q 035503 656 LDEALRVILTM-PCDPD---AHIIGSLLSTCVK-----SNETELAEYISEHLLQLEPDN-PGNYVALSNAYAAS-GRWNE 724 (788)
Q Consensus 656 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 724 (788)
..+|...++++ ..+|+ ...|..++..|.. -|+.++|+.+|+++++++|+. ..+++.+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 45566 4578888888877 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHHCCCccCCc
Q 035503 725 VSQVRDIMKEKGLRKNPG 742 (788)
Q Consensus 725 A~~~~~~~~~~~~~~~~~ 742 (788)
|.+++++.+...+...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999987765455
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0087 Score=48.52 Aligned_cols=67 Identities=7% Similarity=-0.056 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSNETEL---AEYISEHLLQLE-P-DNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++..+-..+++++.++++... ++.+++.++..+ | ......+.|+-.+++.|++++|.++.+.+++..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 555566666666666654444 777777777665 4 345667777777777777777777777776643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.066 Score=61.31 Aligned_cols=166 Identities=14% Similarity=0.061 Sum_probs=106.1
Q ss_pred HHhhcCChHHHHH-HHHhcccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 035503 376 MYAKCERIDNAKQ-VFNSIILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKD 454 (788)
Q Consensus 376 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 454 (788)
.....+++++|.+ ++..+. +......++..+.+.|..++|+++.+... .-.......|++++|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 3345688888887 553332 12233777788888888888887663211 12344567899999988
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC
Q 035503 455 MFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 455 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 534 (788)
+.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...+...++.+....+.+.+...|.
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 86544 2668899999999999999999999998753 22333334446666655555555544432
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 535 CLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
++....+|.+.|++++|++++ .+.+++++|..+-++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 233344555666666666544 445677777776655
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.87 Score=49.09 Aligned_cols=113 Identities=12% Similarity=-0.011 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhH----HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 584 LAVEALALFKNLQQKGIDPDSIT----FTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
+.+.|..++....... ..+... ...+.......+...++...+..... ..++.......+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765433 122222 12222233344434455555555432 123333333333334466788888
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035503 660 LRVILTMPCDP--DAHIIGSLLSTCVKSNETELAEYISEHLLQ 700 (788)
Q Consensus 660 ~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 700 (788)
...|+.++..+ ......-+++++...|+.++|...|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887775432 233344556666677787778777777764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.042 Score=62.92 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
..|++++|.++.+.+. +...|..+...+.+.|+++.|++.|.+
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444332 233455555555555555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.087 Score=42.52 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=92.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 035503 580 AMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659 (788)
Q Consensus 580 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 659 (788)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++..-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3466777777777666553 24445555554444444444445555544332222 234444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 660 LRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 660 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
...+-.+. .+.......+..+..+|.-++-.+++..++..+|-+|..+..++.+|.+.|+..+|.++++++-++|.+
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444432 234455666778889999999999999987777777999999999999999999999999999999975
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0064 Score=51.37 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 035503 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCG---NLDEALRVILTM-PCD-P--DAHIIGSLLSTCVKSNETELAE 692 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~ 692 (788)
...+.+.|.+.... + .++..+...+++++.+.+ +.++++.++++. ... | ....+..++-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555544332 2 256666667777777766 555777777666 222 4 2457778888899999999999
Q ss_pred HHHHHHHhcCCCCCchH
Q 035503 693 YISEHLLQLEPDNPGNY 709 (788)
Q Consensus 693 ~~~~~~~~~~p~~~~~~ 709 (788)
+.++++++.+|++..+.
T Consensus 92 ~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcCCCCHHHH
Confidence 99999999999975544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.06 Score=44.36 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 669 DPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.|...+-..+++++.++. +..+++.+++.++...|. .....+.|+-.+++.|++++|+++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 456666667777776665 345677788888777774 45567777788888888888888888877754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.014 Score=46.55 Aligned_cols=65 Identities=17% Similarity=0.001 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLE-------PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..-...++..+...|+++.|+.-++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4456688999999999999999999999863 2346689999999999999999999999998754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.031 Score=43.18 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHHhhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 638 PSMEHFGCVVNLLSRCGN---LDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 638 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
+++..+..++.++...++ .++|..+++++ ..+| +...+..++..+...|++++|+..++++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 456677777777754444 68888888887 3344 456777888889999999999999999999999843
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.037 Score=44.92 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 669 DPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPD-NPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 669 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.|...+-..+++++.+++ +..+++.+++.+++.+|. ....++.|+-.+++.|++++|+++.+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 456667777777777665 445788888888888874 46778888888999999999999988887654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.86 E-value=3.2 Score=46.59 Aligned_cols=260 Identities=13% Similarity=0.032 Sum_probs=134.9
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhccc-CC-------
Q 035503 326 NFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIIL-RD------- 397 (788)
Q Consensus 326 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~------- 397 (788)
-+.+..|+.++++.++......+. .+.+....-..+.-+....|.-+++..++..... .+
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~------------s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~ 449 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSR------------ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDED 449 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSC------------CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHH
T ss_pred hhhhccCchHHHHHHHHHhccccC------------CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccc
Confidence 346667788888888877654210 0001111122223333334444456666554432 22
Q ss_pred -h--hHHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhH
Q 035503 398 -V--VLWNTLLAAYADLGR-SGEASRLFYQMQLEGISPNIISWN--SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITW 471 (788)
Q Consensus 398 -~--~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 471 (788)
. ..-..+.-+++-.|. -+++.+.+..++... .+...... .+...+.-.|+.+....++..+.+.. +....
T Consensus 450 ~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vr 525 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNIT 525 (963)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHH
Confidence 1 112223333333443 246667676666542 11111122 23334556788888888888775431 33333
Q ss_pred HHHH--HHHHhCCCchHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 035503 472 TTLI--SGLTQNSCGNEAILFFQEMLETGIKPSTT--TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDM 547 (788)
Q Consensus 472 ~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (788)
..+. -++...|+.+.+..+++.+... ..|... ....+..+|+..|+.....+++..+..... .+..-...++-+
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLG 603 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHH
Confidence 3333 3455788999888888888763 122222 223345568888998888888888876422 222222233334
Q ss_pred HHHcCCHHHHHHHHhhCCC-CChhhHH--HHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHhH
Q 035503 548 YAKCGNIHQAKRVFDISPS-KELPVYN--AMISGYAMHGLA-VEALALFKNLQQKGIDPDSIT 606 (788)
Q Consensus 548 ~~~~g~~~~A~~~~~~~~~-~~~~~~~--~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~ 606 (788)
+...|+.+.+.++++.+.. .|+.+-. .+.-+....|.. .+|+.++..+.. .+|..+
T Consensus 604 lI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 604 FVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp HHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 4446666667777765443 4443322 233344444444 578888888864 445443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.16 Score=55.63 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHH
Q 035503 675 IGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIM 732 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 732 (788)
...-..-|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3334555778899999999999999999999999999999999999999999988876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.018 Score=54.34 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=37.3
Q ss_pred chHHHHHHHHhh-----cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC
Q 035503 641 EHFGCVVNLLSR-----CGNLDEALRVILTM-PCDP--DAHIIGSLLSTCVK-SNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 641 ~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~ 704 (788)
..|..|+..|.+ -|+.++|.+.|+++ ...| +...+...+..++. .|+.++|.+.++++++.+|.
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 344455555555 25666666665555 2333 24455555665555 37777777777777777666
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=1.4 Score=38.15 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=54.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHH
Q 035503 442 GFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRN 521 (788)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 521 (788)
.....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 3456677777777666551 556677777777777777777777766542 2223333444555555
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhh
Q 035503 522 GRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDI 563 (788)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (788)
-..+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444443332 22233334445555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.18 Score=40.85 Aligned_cols=90 Identities=17% Similarity=-0.020 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHH---HHHHHHhCCC-C-C--CHHHHHHHHHHHHhcCCHHHHH
Q 035503 620 VNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE---ALRVILTMPC-D-P--DAHIIGSLLSTCVKSNETELAE 692 (788)
Q Consensus 620 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~-p--~~~~~~~l~~~~~~~g~~~~A~ 692 (788)
...+.+.|.+.... + .|+..+-..+++++.+.....+ ++.++++.-. . | .-.....++-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444445544332 2 2666666677777777776655 6677766622 2 3 2235666777899999999999
Q ss_pred HHHHHHHhcCCCCCchHHH
Q 035503 693 YISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~~ 711 (788)
+.++.+++.+|++..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999997655443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.18 Score=41.81 Aligned_cols=101 Identities=9% Similarity=0.083 Sum_probs=54.2
Q ss_pred CCHhHHHHHHHHhhccCcH------HHHHHHHHhcHhhcCCCCCcc-hHHHHHHH------HhhcCChHHHHHHHHhCC-
Q 035503 602 PDSITFTNILNACSHAGLV------NEGLELFVGMFSDHQVKPSME-HFGCVVNL------LSRCGNLDEALRVILTMP- 667 (788)
Q Consensus 602 p~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~- 667 (788)
-|..+|-..+....+.|++ ++.++.|+++.. .++|+.. .+...+.. +...++.++|.++|+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3667777777777777888 777888887765 4556521 11111111 123355555555555541
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 668 -CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 668 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
.+.=+..|...+.--.++|+.+.|++++.+++.+.|.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1111344444444445555555555555555555555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.04 E-value=9.8 Score=42.77 Aligned_cols=268 Identities=13% Similarity=0.030 Sum_probs=130.0
Q ss_pred HHHHcCChhHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCChhhHHHHHHH
Q 035503 407 AYADLGRSGEASRLFYQMQLEG--ISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV-------QPNLITWTTLISG 477 (788)
Q Consensus 407 ~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-------~~~~~~~~~li~~ 477 (788)
+....|+.++++.++...+..+ -.+....-..+.-+...+|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556777777777666544311 011122233334445566665667776666533210 0112222333334
Q ss_pred HHhCCCc-hHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--HcC
Q 035503 478 LTQNSCG-NEAILFFQEMLETGIKPSTT--TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYA--KCG 552 (788)
Q Consensus 478 ~~~~g~~-~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g 552 (788)
+.-.|.- +++.+.+..++...- +... ....+...+.-.|+.+....++..+.... +..+...++.+++ -.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 4444433 466666766665321 1111 11122223445666666677776666532 3334443444333 556
Q ss_pred CHHHHHHHHhhCCC-CChh-hHH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 035503 553 NIHQAKRVFDISPS-KELP-VYN---AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELF 627 (788)
Q Consensus 553 ~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 627 (788)
+.+.+..+.+.+.. .++. -|. ++.-+|+-.|+.....++++.+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 66666666555432 3332 222 34556777788766666888877632 222222222222344456655556666
Q ss_pred HhcHhhcCCCCCcchHHHHHHHHhhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 035503 628 VGMFSDHQVKPSMEHFGCVVNLLSRCGNL-DEALRVILTMPCDPDAHIIGSLLST 681 (788)
Q Consensus 628 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~ 681 (788)
+.+... ..|..+.-..++-+....|.. .+|.+.+..+..++|..+-...+.+
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 555332 233333333444444444443 6777777777666666554443333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.80 E-value=3 Score=36.10 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=21.2
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 035503 550 KCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKN 594 (788)
Q Consensus 550 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 594 (788)
.+|+++.|.++.+.+ .+...|..|......+|+++-|++.|.+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 445555555444433 2334455555555555555555555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.47 E-value=5.7 Score=38.25 Aligned_cols=165 Identities=7% Similarity=0.056 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHH----HHHHHHhCCCCCCHHHHHHHHHHh
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAIL----FFQEMLETGIKPSTTTITCALSAC 513 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~~~~p~~~~~~~ll~~~ 513 (788)
++..-|.+.+++++|++++..-. ..+.+.|+...|.+ +++-..+.+++++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444666666666666654321 11233344333333 233334445566665555555554
Q ss_pred hccCc-----hHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC---C
Q 035503 514 TDVAS-----LRNGRAIHGYLIRHD--LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMH---G 583 (788)
Q Consensus 514 ~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---g 583 (788)
..... ..-..+...+..+.+ ..-++..+..++..|.+.|++.+|...|-.....+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 33221 111222223333332 3357889999999999999999999888633322444444443333322 3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh
Q 035503 584 LAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS 632 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 632 (788)
...++--.. -..++ .|.-.|+...|..+++...+
T Consensus 183 ~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 332221111 11122 24566788888888776644
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.7 Score=39.30 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=19.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 035503 640 MEHFGCVVNLLSRCGNLDEALRVILTMPC 668 (788)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 668 (788)
.+.-..+..+|.+.|+.++|+.+++.++.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 34444667777777777777777777753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.97 Score=37.58 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=60.6
Q ss_pred cCChhHHHHHHHHHHHcCCh------hHHHHHHHHHHHcCCCCchh----HHHHHHHH---HHhcCCHHHHHHHHHHhhh
Q 035503 395 LRDVVLWNTLLAAYADLGRS------GEASRLFYQMQLEGISPNII----SWNSVILG---FLRNGQMNEAKDMFLQMQS 461 (788)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~----~~~~ll~~---~~~~g~~~~A~~~~~~~~~ 461 (788)
..|..+|-..+...-+.|+. ++..++|+++... ++|+.. .|..+.-- +...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44777888888888878888 7888888888775 555421 12111111 2234666666777766644
Q ss_pred CCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 035503 462 LGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETG 498 (788)
Q Consensus 462 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (788)
.+-.. ...|-....--.++|+...|..++.+.+..+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 32121 4455555555556666666666666666544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.91 E-value=9.7 Score=36.94 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=89.5
Q ss_pred hhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhc
Q 035503 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVF----YEMTLEGVEPTRVSVTSILSASA 294 (788)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 294 (788)
++.++..-|.+.+++++|.+++-. -...+.+.|+...+-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668899999999988643 234566778877666555 55566789999999988988887
Q ss_pred CcCChh-----HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 035503 295 NLDALD-----EGKQAHAVAVING--MELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSG 363 (788)
Q Consensus 295 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 363 (788)
....-+ -......+-.+.| ..-|......+...|.+.+++.+|+.-|---.++++..+..++..|...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 765422 1223333344444 33467788889999999999999999885322222345555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.88 Score=49.97 Aligned_cols=54 Identities=9% Similarity=-0.066 Sum_probs=47.2
Q ss_pred HHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 035503 511 SACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP 565 (788)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (788)
.-|...|+++.|..+.++++..-| .+...|..|+.+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346678899999999999999888 788899999999999999999999998876
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.08 E-value=11 Score=36.18 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=88.1
Q ss_pred hhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhc
Q 035503 219 VASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRV----FYEMTLEGVEPTRVSVTSILSASA 294 (788)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 294 (788)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++.+.+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445566678888999999988643 23456678887776665 455556789999998888888876
Q ss_pred CcCCh-----hHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 035503 295 NLDAL-----DEGKQAHAVAVINGM--ELDNVLGSSIINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQS 362 (788)
Q Consensus 295 ~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 362 (788)
....- +-......+..+.|- .-++..+..+...|.+.|++.+|+.-|-.-...++..+..++..+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 64322 223333333334432 246778899999999999999999987633323455555555554443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.00 E-value=5.8 Score=39.81 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHH---
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS--------KELPVYNAMISGYAMHG-LAVEALALFKNLQQKGIDPDSITF--- 607 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~--- 607 (788)
....|+..|.+.|+.++..+++..... +.......+++.+.... ..+.-.++..+.++-. ..+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344566677777777777666665443 11123445555554432 2333333333333211 0111222
Q ss_pred ---HHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCHH
Q 035503 608 ---TNILNACSHAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTM-------PCDPDAH 673 (788)
Q Consensus 608 ---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~ 673 (788)
.-++..|...|++.+|.+++.++.+...-..+ .+.+..-+.+|...|++.++...+.++ ..+|...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 13455666777777777777766554322112 233345556666777777776666555 1222221
Q ss_pred H--HHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 035503 674 I--IGSLLSTCV-KSNETELAEYISEHLLQ 700 (788)
Q Consensus 674 ~--~~~l~~~~~-~~g~~~~A~~~~~~~~~ 700 (788)
. ...-+-.+. ..+++..|-..|-++++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1 111122244 56777777666665553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.36 E-value=4 Score=33.67 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=52.3
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 637 KPSMEHFGCVVNLLSRCGNLD---EALRVILTM-PCDP--DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
.|+..+-..+++++.+....+ +++.+++++ ...| .-....-++-++.+.|++++|++..+.+++.+|++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 466666667777777776544 455666555 2223 234566677789999999999999999999999974443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.06 E-value=1.7 Score=37.00 Aligned_cols=126 Identities=15% Similarity=0.112 Sum_probs=69.2
Q ss_pred CCCCch--hHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCh-------hhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 035503 428 GISPNI--ISWNSVILGFLRNGQMNEAKDMFLQMQSL-GVQPNL-------ITWTTLISGLTQNSCGNEAILFFQEMLET 497 (788)
Q Consensus 428 ~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (788)
|+.|.. .++-.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++.+|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444443 34445566788889999988888876322 122332 24556678888899999999999887542
Q ss_pred C-CCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 035503 498 G-IKPSTT-TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS 566 (788)
Q Consensus 498 ~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (788)
. .-+... +...+. . . ..... ......+..+-..+..+|.+.+++++|+.+++.++.
T Consensus 93 ~k~l~k~~s~~~~~~-~--~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG-N--S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCcccccc-c--c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1 111111 110000 0 0 00000 001113445667788899999999999999988875
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=0.75 Score=46.70 Aligned_cols=61 Identities=15% Similarity=0.025 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
+...++..+...|++++|+..++.++..+|-+...|..|..+|.+.|+..+|.+.|+....
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677788899999999999999999999999999999999999999999999888743
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.51 E-value=1.9 Score=35.06 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=51.3
Q ss_pred CCCcchHHHHHHHHhhcCCh---HHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 035503 637 KPSMEHFGCVVNLLSRCGNL---DEALRVILTM-PCDPD--AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYV 710 (788)
Q Consensus 637 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 710 (788)
.|+..+--.+++++.+.... .+++.+++++ ...|. -..+.-++-++.+.|+++.|++..+.+++.+|++..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 35556666777777776654 3455565555 22232 346777788899999999999999999999999755443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.17 E-value=22 Score=36.56 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC--hhh
Q 035503 402 NTLLAAYADLGRSGEASRLFYQMQLEGISPN-----IISWNSVILGFLRNGQMNEAKDMFLQMQS----LGVQPN--LIT 470 (788)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~g~~~~--~~~ 470 (788)
..+...+...|++.+|.+++..+...-...+ ...+...+..|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4567778888888888888888765421222 23566677788889999999888888632 211222 244
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCHHHHHH----HHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 471 WTTLISGLTQNSCGNEAILFFQEMLET-GIKPSTTTITC----ALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
+...+..+...+++.+|...|.+.... ....|...+.. ++.+..-.+....-..+..........++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566777778888999988888877642 11122222221 1111111221122222222222222224566778888
Q ss_pred HHHHHc--CCHHHHHHHHhhCCCCC
Q 035503 546 DMYAKC--GNIHQAKRVFDISPSKE 568 (788)
Q Consensus 546 ~~~~~~--g~~~~A~~~~~~~~~~~ 568 (788)
.+|... .+++...+.|.....++
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHhchHhhhHHHHHHHHHHhccc
Confidence 888764 56888888887665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.33 E-value=25 Score=36.14 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---HhHHHHHHHHhhccCcHHHHHHHHHhcHhh-cCCCCC----cch
Q 035503 573 NAMISGYAMHGLAVEALALFKNLQQK--GIDPD---SITFTNILNACSHAGLVNEGLELFVGMFSD-HQVKPS----MEH 642 (788)
Q Consensus 573 ~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~----~~~ 642 (788)
..|...|...|++.+|.+++.++... +..+. ...+...++.|...+++..|..+++++... ....+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666777777777777777776532 21111 123444555677788888888777775321 112222 233
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM 666 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~ 666 (788)
+...+..+...+++.+|...|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 447777777788888887766555
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.29 E-value=22 Score=34.43 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 035503 534 LCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNA 613 (788)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 613 (788)
+.-++.....++..|.+.+++.+|...|-...++.+..+..++.-+...+...+ ++......++ .
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~ 196 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-P 196 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-H
Confidence 446788999999999999999999998853222223455444433332222111 1112222222 2
Q ss_pred hhccCcHHHHHHHHHhcH
Q 035503 614 CSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~ 631 (788)
|.-.++...|...++...
T Consensus 197 yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 555677777777665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.72 E-value=12 Score=44.20 Aligned_cols=134 Identities=6% Similarity=-0.086 Sum_probs=69.6
Q ss_pred cHHHHHHHhcccCCchHHHHHHHHHHHHcCCCch----hhhhHHHHHhHhcCChHHHHHHHhcCCCCC--cchHHHHHHH
Q 035503 184 VLPNVLKACGALGWVGFGRAVHGYVLKVGFDGCV----FVASSLIDMYGKCGDLEEARKVFDGMIARN--VVAWNSMIVG 257 (788)
Q Consensus 184 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~ 257 (788)
.|..++..+.+.+.++.+.++-...++..-+.+. ..|..+.+.+...|++++|...+-.++... ......|+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3556666666677777777666666655422221 245666666677777777766665543221 1233334444
Q ss_pred HHHCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChh
Q 035503 258 YVQNGLNEEAIRVFYEMTLEGVEPTRVSVTSILSASANLDALDEGKQAHAVAVING--MELDNVLGSSIINFYSKVGLLE 335 (788)
Q Consensus 258 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 335 (788)
.+..|..+.-+. +--.|..++...++....+.. ....+..|..|=..+...|++.
T Consensus 981 lce~~~~~~L~~-----------------------lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR 1037 (1139)
T 4fhn_B 981 LTKQGKINQLLN-----------------------YSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYR 1037 (1139)
T ss_dssp HHHHCCHHHHHH-----------------------HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTS
T ss_pred HHhCCChhhhhC-----------------------CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChH
Confidence 444333222111 112344455555554433322 1222345677777778888887
Q ss_pred HHHHH
Q 035503 336 DAEVV 340 (788)
Q Consensus 336 ~A~~~ 340 (788)
+|-.+
T Consensus 1038 ~AA~v 1042 (1139)
T 4fhn_B 1038 DAAAI 1042 (1139)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 66554
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=84.25 E-value=50 Score=35.68 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHhHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHH
Q 035503 223 LIDMYGKCGDLEEARKVFDGMIA---RNVVAWNSMIVGYVQ 260 (788)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 260 (788)
+|-.+.|+|++++|.++.++... .-...+-..+..|+.
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 55667788888888888876632 112356666666664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.89 E-value=5.1 Score=40.46 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh----hcCCCCCcchHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS----DHQVKPSMEHFG 644 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~ 644 (788)
...++..+...|++.+|+..+.++.... +-+...+..++.++...|+..+|++.|+++.+ +.|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456667778888888888888877653 34777888888888888998888888887543 458888766543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=83.45 E-value=17 Score=29.64 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 035503 399 VLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464 (788)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~ 464 (788)
...+..+..+...|+-+.-.+++..+... .+|+......+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34455566666677777666666664332 356666666666777777777777777766666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.56 E-value=15 Score=43.23 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 035503 675 IGSLLSTCVKSNETELAEYIS 695 (788)
Q Consensus 675 ~~~l~~~~~~~g~~~~A~~~~ 695 (788)
|..+...+...|++++|-..+
T Consensus 941 ~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 941 THETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHH
Confidence 444455555555555544443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.65 E-value=13 Score=28.13 Aligned_cols=85 Identities=18% Similarity=0.120 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+....||...|-+|. -.+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45566666666555443 2222222344567889999999999888888888887764 3577888888888877776
Q ss_pred cCCCCCHhHH
Q 035503 598 KGIDPDSITF 607 (788)
Q Consensus 598 ~~~~p~~~~~ 607 (788)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.26 E-value=14 Score=28.07 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+....||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666655555443 22222222445667888888888888888888888877643 456777777777777666
Q ss_pred cCCCCCHhHH
Q 035503 598 KGIDPDSITF 607 (788)
Q Consensus 598 ~~~~p~~~~~ 607 (788)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 4443333
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.05 E-value=12 Score=34.80 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=63.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChH
Q 035503 578 GYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLD 657 (788)
Q Consensus 578 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 657 (788)
.+.+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++... .+.|+...-..+..-+.+ -+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~---aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVK---AA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHH---HH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHH---HH
Confidence 3456677777777777666653 3355555566667777777777777776664 334543222111111111 11
Q ss_pred HHH-HHHHhC--C-CCCCHHHHH-HHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 658 EAL-RVILTM--P-CDPDAHIIG-SLLST--CVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 658 ~A~-~~~~~~--~-~~p~~~~~~-~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+. ++|..- + .--++..|. .++.+ ....|+.++|..+-.++++.-|..+.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 221 122211 1 001112233 33333 33457777777777777777766544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.74 E-value=14 Score=28.06 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=61.6
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHH
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 274 (788)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+.+..-+..+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777777766552 33333334456788999999999999999999999987754 4678888888777777
Q ss_pred HHcCCCCCHHHH
Q 035503 275 TLEGVEPTRVSV 286 (788)
Q Consensus 275 ~~~g~~p~~~t~ 286 (788)
..+| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 4444444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.71 E-value=2.6 Score=39.15 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=43.9
Q ss_pred HHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 035503 648 NLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN 705 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 705 (788)
..+.+.|++++|++.+... ..+.|...-..++..++..|++++|.+-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3466788888888776555 334466667778888888888888888888888888884
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.57 E-value=13 Score=28.15 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=62.6
Q ss_pred cCCchHHHHHHHHHHHHcCCCchhhhhHHHHHhHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHHCCChhHHHHHHHHH
Q 035503 195 LGWVGFGRAVHGYVLKVGFDGCVFVASSLIDMYGKCGDLEEARKVFDGMIARNVVAWNSMIVGYVQNGLNEEAIRVFYEM 274 (788)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 274 (788)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+.+..-+..+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777777766552 33333334456789999999999999999999999987754 4788888888888788
Q ss_pred HHcCCCCCHHHH
Q 035503 275 TLEGVEPTRVSV 286 (788)
Q Consensus 275 ~~~g~~p~~~t~ 286 (788)
..+| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7776 4444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 788 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 4e-07
Identities = 41/358 (11%), Positives = 115/358 (32%), Gaps = 19/358 (5%)
Query: 377 YAKCERIDNAKQVFNSIILRD---VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNI 433
+ + A++ + ++ + L + + R ++ ++ +P +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA-IK-QNPLL 66
Query: 434 I-SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQ 492
++++ LG + + + + +L ++P+ I ++ + E +
Sbjct: 67 AEAYSN--LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 493 EMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552
+ + + L +A + I ++L ++ G
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV-AWSNLGCVFNAQG 183
Query: 553 NIHQA----KRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFT 608
I A ++ + P L Y + + + A+A + ++
Sbjct: 184 EIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241
Query: 609 NILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVI--LTM 666
N+ GL++ ++ + P + + + N L G++ EA
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFP--DAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 667 PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNE 724
C A + +L + + E A + L++ P+ + L++ G+ E
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 7e-07
Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 14/185 (7%)
Query: 544 LVDMYAKCGNIHQAKRVFDISPSKELP---VYNAMISGYAMHGLAVEALALFKNLQQKGI 600
L ++ + +A + + S V+ + Y GL A+ ++ + +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--L 266
Query: 601 DPDSI-TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEA 659
P + N+ NA G V E + + + + + N+ GN++EA
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCY--NTALRLCPTHADSLNNLANIKREQGNIEEA 324
Query: 660 L----RVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715
+ + + P AH +L S + + + A + +++ P Y + N
Sbjct: 325 VRLYRKALEVFPEFAAAHS--NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 716 YAASG 720
Sbjct: 383 LKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 7e-04
Identities = 46/383 (12%), Positives = 111/383 (28%), Gaps = 30/383 (7%)
Query: 229 KCGDLEEARKVFDGMIAR---NVVAWNSMIVGYVQNGLNEEAIRVFYEMTLEGVEPTRVS 285
+ GD E A + + + N + + Q + + F + ++ P
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH-FSTLAIK-QNPL--- 65
Query: 286 VTSILSASANLDALDEGKQAHAVAVINGMELDNVLGSSIINFYSKVGLLEDAEVVFSRMV 345
+A + +++ + + G + A + +
Sbjct: 66 ---------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116
Query: 346 ERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSIILRDVVLWNTLL 405
V + Y +++ + E V W+ L
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 406 AAYADLGRSGEASRLFYQMQLEGISPNII-SWNSVILGFLRNGQMNEAKDMFLQMQSLGV 464
+ G A + + + PN + ++ ++ + A +L+ SL
Sbjct: 177 CVFNAQGEIWLAIH--HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233
Query: 465 QPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRA 524
+ + L + + AI ++ +E ++P C L+
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 525 IHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQA----KRVFDISPSKELPVYNAMISGYA 580
+ +L ++ + GNI +A ++ ++ P + ++ + S
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQ 350
Query: 581 MHGLAVEALALFKNLQQKGIDPD 603
G EAL +K + I P
Sbjct: 351 QQGKLQEALMHYKEAIR--ISPT 371
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.13 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.96 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.73 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.29 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.22 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.96 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.95 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.94 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.92 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.65 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.64 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.61 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.36 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.29 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.22 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.35 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.28 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.13 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.34 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-22 Score=211.41 Aligned_cols=376 Identities=14% Similarity=0.111 Sum_probs=301.2
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHhcc---cCChhH
Q 035503 324 IINFYSKVGLLEDAEVVFSRMVERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNSII---LRDVVL 400 (788)
Q Consensus 324 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~ 400 (788)
+...+.+.|++++|++.|+++.+.++ .++.++..++.+|.+.|++++|+..|++.. +.+..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a 69 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP---------------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45667788999999999988866554 455677888899999999999999999875 235678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHh
Q 035503 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQ 480 (788)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 480 (788)
|..+...+...|++++|+..+..+.... +.+..............+....+........... ................
T Consensus 70 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 147 (388)
T d1w3ba_ 70 YSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 8899999999999999999999988874 3344444455555556666666666665554332 2244555666677778
Q ss_pred CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (788)
.+....+...+.+..... +.+...+..+...+...|+++.|...++.+++..| .+...+..++..+...|++++|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHH
Confidence 888888888888877642 33456777777888899999999999999999887 6778889999999999999999999
Q ss_pred HhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCC
Q 035503 561 FDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637 (788)
Q Consensus 561 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 637 (788)
++.... .+...+..+..++...|++++|+..|++..+.. +-+..++..+..++...|++++|++.++.+... .+
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 302 (388)
T d1w3ba_ 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CP 302 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CT
T ss_pred HHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CC
Confidence 976543 455678889999999999999999999988853 235677888888999999999999999988653 33
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 035503 638 PSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNA 715 (788)
Q Consensus 638 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 715 (788)
.+...+..++..+.+.|++++|++.++++ ...|+ ..++..++.++...|++++|+..++++++++|+++.+|..|+.+
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45677778999999999999999999886 44454 56788899999999999999999999999999999999999999
Q ss_pred HHhCCC
Q 035503 716 YAASGR 721 (788)
Q Consensus 716 ~~~~g~ 721 (788)
|.+.||
T Consensus 383 ~~~~~D 388 (388)
T d1w3ba_ 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.8e-21 Score=202.07 Aligned_cols=356 Identities=12% Similarity=0.086 Sum_probs=297.9
Q ss_pred HHHHHhhcCChHHHHHHHHhcc--c-CChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 035503 373 IVDMYAKCERIDNAKQVFNSII--L-RDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQM 449 (788)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (788)
+...+.+.|++++|++.++++. . .++..+..+...+.+.|++++|+..|+++++.. +-+..++..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 4566778899999999999885 2 357788999999999999999999999999874 34567889999999999999
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 035503 450 NEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYL 529 (788)
Q Consensus 450 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 529 (788)
++|+..+....... +.+...+..........+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999997653 2345555555666666677777777666666543 344445555566677788888888888888
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH
Q 035503 530 IRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSIT 606 (788)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 606 (788)
....+ .....+..++..+...|++++|...++.... .+..+|..+...+...|++++|+..+++....+ ..+...
T Consensus 162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 88877 6778889999999999999999999986543 456789999999999999999999999988864 456677
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCV 683 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 683 (788)
+..+...+...|++++|+..|+++++ +.|+ ...+..++.++...|+.++|++.++.+ ..+.+...+..++..+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 88888899999999999999999874 4455 677889999999999999999999887 24456778889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
..|++++|+..++++++.+|+++.++..++.+|.+.|++++|...++++++..
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.4e-15 Score=149.74 Aligned_cols=242 Identities=13% Similarity=-0.001 Sum_probs=163.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 035503 473 TLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCG 552 (788)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (788)
.....+.+.|++++|+..|+++++.. +-+..++..+..++...|++++|...+.++++..| .+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 45556677777777777777777642 22345666666666677777777777777766665 45556666666666666
Q ss_pred CHHHHHHHHhhCCCCChh---hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHh
Q 035503 553 NIHQAKRVFDISPSKELP---VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVG 629 (788)
Q Consensus 553 ~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 629 (788)
++++|.+.++.....++. .+....... ...+.......+..+...+...+|...|.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666666665543221110 000000000 000000011112223445667788888888
Q ss_pred cHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 630 MFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 630 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
++....-.++...+..++..+...|++++|+..++++ .. +.+...|..++..+...|++++|+..++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7654333445667778899999999999999999887 22 335678999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 708 NYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 708 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
++..+|.+|.+.|++++|+..|++.++..
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.1e-14 Score=143.75 Aligned_cols=269 Identities=15% Similarity=0.118 Sum_probs=199.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 035503 438 SVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA 517 (788)
Q Consensus 438 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 517 (788)
.....+.+.|++++|+..|+++.+.. +-+...|..+..++...|++++|...|.+.++.. +-+...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 46677899999999999999998763 3367889999999999999999999999998842 334567788888999999
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQ 597 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 597 (788)
++++|...++.+....+.. ............ ..+.......+..+...+.+.+|.+.|.+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999877632 111111000000 00011111122334455677888899888776
Q ss_pred cCC-CCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHH
Q 035503 598 KGI-DPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAH 673 (788)
Q Consensus 598 ~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 673 (788)
... .++...+..+...+...|++++|+..|+++... .|+ ...+..++.+|.+.|++++|.+.++++ ...| +..
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 532 235567777888899999999999999998753 354 677889999999999999999999887 3334 466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----------HHHHHHHHHhCCCcHHHHHH
Q 035503 674 IIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGN-----------YVALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 674 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~ 728 (788)
+|..++.+|...|++++|+..|+++++++|++... |..+..++...|+.+.+...
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999999999999999999999987653 45677788888887766543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=3.7e-10 Score=114.04 Aligned_cols=265 Identities=11% Similarity=-0.053 Sum_probs=150.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCHHHHHHHHHHhh
Q 035503 440 ILGFLRNGQMNEAKDMFLQMQSLGVQPN----LITWTTLISGLTQNSCGNEAILFFQEMLETGI-KPSTTTITCALSACT 514 (788)
Q Consensus 440 l~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~ 514 (788)
...+...|++++|+.++++..+.....+ ...+..+..++...|++++|+..|++..+... .++..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------- 88 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---------- 88 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH----------
Confidence 3445566666666666666544311111 12344455556666666666666665543110 01110
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCC-------CCC----hhhHHHHHHHHHhCC
Q 035503 515 DVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISP-------SKE----LPVYNAMISGYAMHG 583 (788)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~g 583 (788)
.....+..+...+...|++..+...+.... .+. ...+..+...+...|
T Consensus 89 ---------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 89 ---------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 001123334445555555555555543221 111 123445666777777
Q ss_pred CHHHHHHHHHHHHHcCCCC----CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-----cchHHHHHHHHhhcC
Q 035503 584 LAVEALALFKNLQQKGIDP----DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-----MEHFGCVVNLLSRCG 654 (788)
Q Consensus 584 ~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g 654 (788)
+++.+...+.+........ ....+......+...++..++...+.+.......... ...+..++..+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 7777777777766532111 1233444445566777777777777665443222222 123345566677788
Q ss_pred ChHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCCCchHHHHHHHHHhCCCc
Q 035503 655 NLDEALRVILTMP-CD-----PDAHIIGSLLSTCVKSNETELAEYISEHLLQ------LEPDNPGNYVALSNAYAASGRW 722 (788)
Q Consensus 655 ~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~ 722 (788)
+.++|...+.+.. .. .....+..++.++...|++++|...+++++. ..|+...++..++.+|...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 8888888887762 11 1234566677778888888888888888764 3344566788888888888888
Q ss_pred HHHHHHHHHHHHC
Q 035503 723 NEVSQVRDIMKEK 735 (788)
Q Consensus 723 ~~A~~~~~~~~~~ 735 (788)
++|.+.+++.++.
T Consensus 308 ~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 308 SDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.2e-10 Score=112.49 Aligned_cols=215 Identities=9% Similarity=0.048 Sum_probs=129.2
Q ss_pred HhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC-HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHH
Q 035503 512 ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN-IHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVE 587 (788)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 587 (788)
.+.+.+..++|..+++.+++.+| .+..+|+..+.++...|+ +++|+..++.+.. .+..+|+.+..++...|++++
T Consensus 52 ~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 52 VLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHH
Confidence 34444455555555555555555 455555555555555543 5666666654432 344566666666677777777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCC------hHHHH
Q 035503 588 ALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGN------LDEAL 660 (788)
Q Consensus 588 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A~ 660 (788)
|++.++++++.. +.+...|..+..++.+.|++++|++.++.+++ +.|+ ...|..++.++.+.|. +++|+
T Consensus 131 Al~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai 206 (315)
T d2h6fa1 131 ELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 206 (315)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence 777777776643 23566677777777777777777777777763 3343 4555555555555444 56777
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHhC--CCcHHHHHHHHHH
Q 035503 661 RVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG--NYVALSNAYAAS--GRWNEVSQVRDIM 732 (788)
Q Consensus 661 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~~~~~~ 732 (788)
+.+.++ ...| +...|..+...+... ..+++...+++++++.|+... .+..++.+|... ++.+.+...+++.
T Consensus 207 ~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 207 QYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 776665 2333 566777777665444 457788888888888887443 455667776543 4445555555444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.6e-10 Score=110.60 Aligned_cols=220 Identities=8% Similarity=-0.107 Sum_probs=134.9
Q ss_pred chHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 035503 484 GNEAILFFQEMLETGIKPS---TTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRV 560 (788)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (788)
.+.++..+++.+......+ ..++..+..++...|++++|...|+++++..| .++.++..++.+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555666654321111 13455556677777888888888888887777 6677788888888888888888888
Q ss_pred HhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCC
Q 035503 561 FDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVK 637 (788)
Q Consensus 561 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 637 (788)
|+++.+ .+..+|..++.+|...|++++|++.|++.++.. +.+......+..++...+..+.+..+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 876553 345678888888888889999998888887753 22344433344445555555555444444432 22
Q ss_pred CCcchHHHHHHHHhhcCC----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 035503 638 PSMEHFGCVVNLLSRCGN----LDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNY 709 (788)
Q Consensus 638 p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 709 (788)
+....+. ++..+..... .+.+...+... ...|+ ..+|..++..+...|++++|+..|+++++.+|++...|
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222222 2222222222 22222222111 11122 24677788889999999999999999999999875444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=7e-11 Score=118.01 Aligned_cols=230 Identities=6% Similarity=-0.096 Sum_probs=156.5
Q ss_pred CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC--chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 035503 481 NSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVA--SLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAK 558 (788)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 558 (788)
.|++++|+.+++...+.. +-+...+.....++...+ +++++...+..+++..+......+...+..+...+++++|+
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence 344566777777766632 233445555544444433 46777777777777766332333345567777788888888
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcC
Q 035503 559 RVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQ 635 (788)
Q Consensus 559 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 635 (788)
..++.+.. .+..+|+.+..++...|++++|...+++.... .|+.. .+...+...+..+++...+......
T Consensus 165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~-- 237 (334)
T d1dcea1 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG-- 237 (334)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--
Confidence 88877665 34467778888888888887776655544332 12211 1223344556666777777776542
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 035503 636 VKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713 (788)
Q Consensus 636 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 713 (788)
-++....+..++..+...|+.++|...+.+. ...|+ ..+|..++..+...|++++|+..++++++++|++...|..|+
T Consensus 238 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 2334555667788888899999999998887 44454 457888999999999999999999999999999999999998
Q ss_pred HHHHh
Q 035503 714 NAYAA 718 (788)
Q Consensus 714 ~~~~~ 718 (788)
..+.-
T Consensus 318 ~~~~~ 322 (334)
T d1dcea1 318 SKFLL 322 (334)
T ss_dssp HHHHH
T ss_pred HHHhH
Confidence 87764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.1e-10 Score=111.92 Aligned_cols=215 Identities=10% Similarity=-0.000 Sum_probs=153.0
Q ss_pred chHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCCHHHHHHH
Q 035503 518 SLRNGRAIHGYLIRHDLCL---PTPIVTSLVDMYAKCGNIHQAKRVFDISP---SKELPVYNAMISGYAMHGLAVEALAL 591 (788)
Q Consensus 518 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 591 (788)
+.+.+...+++++...... ...++..++.+|.+.|++++|+..|++.. +.++.+|+.++.+|...|++++|++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555566666543311 23477888999999999999999998665 35677999999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CC
Q 035503 592 FKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTMP-CD 669 (788)
Q Consensus 592 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 669 (788)
|+++++.. +.+..++..+..++...|++++|+..|++.++. .|+ ......+...+.+.+..+.+..+..... ..
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 99999864 235667888888999999999999999998754 344 3444455555566665555544433331 11
Q ss_pred CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 670 PDAHIIGSLLSTCV----KSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 670 p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+....+. ++..+. ..+..+.+...+.......|+...+|..++.+|...|++++|...|++.+...+
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 1111121 222221 223456666666666667788888999999999999999999999999987654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=7.3e-09 Score=104.17 Aligned_cols=301 Identities=11% Similarity=-0.038 Sum_probs=181.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----hhhH
Q 035503 401 WNTLLAAYADLGRSGEASRLFYQMQLEGISPN----IISWNSVILGFLRNGQMNEAKDMFLQMQSLGV-QPN----LITW 471 (788)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~ 471 (788)
.......+...|++++|++++++.+......+ ...+..+...|...|++++|...|++..+... .++ ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34445678899999999999999988632211 24567788899999999999999998744211 111 2345
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhC----CCCCCH---HHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 035503 472 TTLISGLTQNSCGNEAILFFQEMLET----GIKPST---TTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSL 544 (788)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 544 (788)
..+...+...|++..+...+.+.... +..... ..+..+...+...|+++.+...+.............
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 169 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ----- 169 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh-----
Confidence 56667788888998888888876531 111111 122223333444444444444444444322211100
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCC----HhHHHHHHHHhhccC
Q 035503 545 VDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKG--IDPD----SITFTNILNACSHAG 618 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ll~~~~~~g 618 (788)
....++..+...+...++..++...+.+..... .... ...+..+...+...|
T Consensus 170 ----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 170 ----------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp ----------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 111233444555666667777666666544321 1111 123344455677788
Q ss_pred cHHHHHHHHHhcHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCH
Q 035503 619 LVNEGLELFVGMFSDHQVKPS--MEHFGCVVNLLSRCGNLDEALRVILTM-------PCDPD-AHIIGSLLSTCVKSNET 688 (788)
Q Consensus 619 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~ 688 (788)
++++|...+++......-.+. ...+..++.++...|++++|...++++ ...|+ ...+..++.+|...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 888888888776532111111 223346778888888888888888765 22233 34677788889999999
Q ss_pred HHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhCCCcHHHHHH
Q 035503 689 ELAEYISEHLLQLEPDN---------PGNYVALSNAYAASGRWNEVSQV 728 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~ 728 (788)
++|+..+++++++.+.. ...+..+...+...++.+++.+.
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 99999999998875432 22344455556667777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.3e-09 Score=106.80 Aligned_cols=125 Identities=8% Similarity=-0.020 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCC-CchHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 035503 435 SWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS-CGNEAILFFQEMLETGIKPSTTTITCALSAC 513 (788)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 513 (788)
.++.+...+.+.+.+++|+.+++++.+.. +-+...|+....++...| ++++|+..+++.++.. +-+..+|......+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 33444444445555555555555554431 113334444444444433 2455555555544421 22233444444444
Q ss_pred hccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHh
Q 035503 514 TDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562 (788)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (788)
...|++++|...+..+++..| .+..+|..++.++...|++++|+..|+
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVD 170 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444455555555555444444 334444444444444444444444444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=2.4e-11 Score=121.46 Aligned_cols=245 Identities=8% Similarity=-0.106 Sum_probs=180.5
Q ss_pred CCchHHHHHHHHHHhCCCCCCHHH-HHH---HHH-------HhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 035503 482 SCGNEAILFFQEMLETGIKPSTTT-ITC---ALS-------ACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAK 550 (788)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~~~-~~~---ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (788)
+..++|++++++.++ ..|+..+ |+. ++. .+...|.++++...++.+++.+| .+...+..++.++..
T Consensus 43 ~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHH
Confidence 334677777777765 3455432 221 111 12344567889999999999888 777888888888777
Q ss_pred cCC--HHHHHHHHhhCCC---CChhhHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHH
Q 035503 551 CGN--IHQAKRVFDISPS---KELPVYN-AMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGL 624 (788)
Q Consensus 551 ~g~--~~~A~~~~~~~~~---~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 624 (788)
.++ +++|+..++.+.. ++...|. .....+...|++++|+..+++++..+ +-+...|..+..++...|++++|.
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 664 8899999987643 4455554 45577788999999999999988764 336778888888899999988887
Q ss_pred HHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 035503 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM--PCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLE 702 (788)
Q Consensus 625 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 702 (788)
..++..... .|. ...+...+...+..+++...+... ..+++...+..++..+...|+.++|...+.++++.+
T Consensus 199 ~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 666655432 121 123344456677777787777665 233344456677778888899999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 703 PDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 703 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|++..++..++.+|...|++++|.++++++.+..
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999998864
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=1.1e-08 Score=100.00 Aligned_cols=163 Identities=9% Similarity=0.003 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVN 648 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 648 (788)
..|...+..+...|+.++|..+|++++..........|...+..+.+.|+.+.|.++|+++.+ ..|+ ...|...+.
T Consensus 100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~---~~~~~~~~~~~~a~ 176 (308)
T d2onda1 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAAL 176 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCcHHHHHHHHH
Confidence 345555555555555566665555555432111123445555555555555666666655542 2222 233333333
Q ss_pred HH-hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHhCCC
Q 035503 649 LL-SRCGNLDEALRVILTMP--CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG----NYVALSNAYAASGR 721 (788)
Q Consensus 649 ~~-~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~ 721 (788)
.. ...|+.+.|..+|+.+- .+.+...|...+..+...|+.+.|+.+|+++++..|.++. .|...+..-...|+
T Consensus 177 ~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence 22 22355555665555551 2223455666666666666666666666666665554332 44455555555566
Q ss_pred cHHHHHHHHHHHHC
Q 035503 722 WNEVSQVRDIMKEK 735 (788)
Q Consensus 722 ~~~A~~~~~~~~~~ 735 (788)
.+.+.++++++.+.
T Consensus 257 ~~~~~~~~~r~~~~ 270 (308)
T d2onda1 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=7.1e-08 Score=94.18 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 035503 448 QMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHG 527 (788)
Q Consensus 448 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 527 (788)
..++|..+|++..+...+.+...|...+..+...|++++|..+|++++..........+...+..+.+.|+.+.|..+++
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34666777777665433445556666777777777777777777777763222223356666677777777777777777
Q ss_pred HHHHcCCCCChhHHHHHHHHH-HHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC
Q 035503 528 YLIRHDLCLPTPIVTSLVDMY-AKCGNIHQAKRVFDISPS---KELPVYNAMISGYAMHGLAVEALALFKNLQQKG-IDP 602 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p 602 (788)
.+++..+ .+...+...+... ...|+.+.|..+|+.+.. .+...|...+..+...|+.++|..+|++.+... ..|
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 7777666 3444444444432 334667777777765543 344567777777777777777777777766643 222
Q ss_pred C--HhHHHHHHHHhhccCcHHHHHHHHHhcHhhc
Q 035503 603 D--SITFTNILNACSHAGLVNEGLELFVGMFSDH 634 (788)
Q Consensus 603 ~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 634 (788)
+ ...|...+.--...|+.+.+..+++++.+.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 2345555554455677777777777765544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=1e-08 Score=93.34 Aligned_cols=96 Identities=14% Similarity=-0.055 Sum_probs=46.3
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 035503 639 SMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAY 716 (788)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 716 (788)
+...+...+..|.+.|++++|+..|+++ .. +.++..|..++.+|...|++++|+..++++++++|+++.+|..+|.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3333444444444444444444444443 11 123334445555555555555555555555555555555555555555
Q ss_pred HhCCCcHHHHHHHHHHHH
Q 035503 717 AASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 717 ~~~g~~~~A~~~~~~~~~ 734 (788)
...|++++|...|+++++
T Consensus 83 ~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.2e-07 Score=84.69 Aligned_cols=141 Identities=9% Similarity=-0.017 Sum_probs=107.0
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHH
Q 035503 544 LVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEG 623 (788)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 623 (788)
-+..+...|+++.|++.|+.+.+++..+|..++.+|...|++++|++.|++.++.+ +.+...|..+..++.+.|++++|
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHH
Confidence 36677889999999999999888888889999999999999999999999988864 34567888888889999999999
Q ss_pred HHHHHhcHhhcCCCCCcc-hHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 035503 624 LELFVGMFSDHQVKPSME-HFGCVVNLLSRCGNLDEALRVILTMPCDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQL 701 (788)
Q Consensus 624 ~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 701 (788)
+..|++.+.. .+++.. .|. ..|. ..+.+ ..++..++.++...|++++|+..+++++++
T Consensus 90 ~~~~~kAl~~--~~~n~~~~~~-------~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLIDYK-------ILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHT--TTTCSEEECG-------GGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CccCchHHHH-------Hhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999888642 122211 010 0000 00111 235667788888999999999999999999
Q ss_pred CCCC
Q 035503 702 EPDN 705 (788)
Q Consensus 702 ~p~~ 705 (788)
.|+.
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 8885
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.2e-08 Score=81.19 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=64.5
Q ss_pred HHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcH
Q 035503 646 VVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWN 723 (788)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 723 (788)
-+..+.+.|++++|+..|+++ . .+.+...|..++.++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 355566667777777777666 2 23345567777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCC
Q 035503 724 EVSQVRDIMKEKG 736 (788)
Q Consensus 724 ~A~~~~~~~~~~~ 736 (788)
+|...+++.++..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=2.8e-08 Score=96.18 Aligned_cols=187 Identities=12% Similarity=-0.021 Sum_probs=116.7
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--CHhHHHHH
Q 035503 545 VDMYAKCGNIHQAKRVFDISPS-----KE----LPVYNAMISGYAMHGLAVEALALFKNLQQKGI---DP--DSITFTNI 610 (788)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~l 610 (788)
+.+|..+|++++|.+.|.+..+ .+ ..+|..++.+|.+.|++++|++.+++..+... .+ ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 4455556666666555543322 11 13567777778888888888888777554210 11 12344555
Q ss_pred HHHhh-ccCcHHHHHHHHHhcHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCC----CH-HHHH
Q 035503 611 LNACS-HAGLVNEGLELFVGMFSDHQVKPS----MEHFGCVVNLLSRCGNLDEALRVILTMP----CDP----DA-HIIG 676 (788)
Q Consensus 611 l~~~~-~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~-~~~~ 676 (788)
...|. ..|++++|++.|+++..-.....+ ..++..++..|...|++++|++.++++. ..+ .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55554 468999999999887543221222 3456688999999999999999998861 111 11 2344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHh--CCCcHHHHHHHHH
Q 035503 677 SLLSTCVKSNETELAEYISEHLLQLEPDNPG-----NYVALSNAYAA--SGRWNEVSQVRDI 731 (788)
Q Consensus 677 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~ 731 (788)
..+..+...|+++.|...++++.+.+|..+. ....|+.++.. .+++++|+..|+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555677889999999999999999987443 34556666655 3467888888864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=4.3e-08 Score=79.43 Aligned_cols=105 Identities=16% Similarity=0.054 Sum_probs=84.6
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSN 686 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g 686 (788)
-...+...|++++|+..|+++++. .|+ ...|..++.+|...|++++|+..++++ . .+.+...|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345567788888888888887743 344 667778888888888888888888777 2 3446678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 035503 687 ETELAEYISEHLLQLEPDNPGNYVALSNAYA 717 (788)
Q Consensus 687 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 717 (788)
++++|+..++++++++|+++.++..+..+..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999988887654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.73 E-value=1.4e-08 Score=81.60 Aligned_cols=91 Identities=18% Similarity=0.028 Sum_probs=81.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASG 720 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 720 (788)
...++..+.+.|++++|+..++++ ...| ++..|..++.++...|++++|+..++++++++|+++.++..|+.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 345778888999999999999887 3344 56789999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHH
Q 035503 721 RWNEVSQVRDIMK 733 (788)
Q Consensus 721 ~~~~A~~~~~~~~ 733 (788)
++++|.+.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.9e-07 Score=83.27 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=90.6
Q ss_pred HhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 035503 613 ACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTM-PC-DPDAHIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 613 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 690 (788)
.+...|+++.|++.|.++. +|++.++..++.+|...|++++|++.|+++ .. +..+..|..++.++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3556777777777776542 355666777777777777777777777776 22 3345678888888888888888
Q ss_pred HHHHHHHHHhcCCCCC----------------chHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 691 AEYISEHLLQLEPDNP----------------GNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 691 A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
|+..++++++..|.+. .++..++.+|.+.|++++|.+.++......+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888888887655532 4578899999999999999999998877654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=9e-08 Score=82.76 Aligned_cols=118 Identities=10% Similarity=0.021 Sum_probs=69.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 035503 607 FTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCV 683 (788)
Q Consensus 607 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 683 (788)
+......|.+.|++++|+..|+++++. .|+ ...|..++.+|...|++++|+..|+++ ...| +..+|..++.++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 334444566667777777777666532 343 455556666666666666666666665 2222 3356666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HhCCCcHHHHH
Q 035503 684 KSNETELAEYISEHLLQLEPDNPGNYVALSNAY--AASGRWNEVSQ 727 (788)
Q Consensus 684 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~ 727 (788)
..|++++|+..++++++++|+++.++..+..+. ...+.+++|..
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666666555443 23333444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.1e-07 Score=82.11 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLL 650 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 650 (788)
+...+..|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..++.+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH---HcccchHHHHHHHHHH
Confidence 4445566667777777777777766653 23455566666666777777777777776653 2344 45666667777
Q ss_pred hhcCChHHHHHHHHhC
Q 035503 651 SRCGNLDEALRVILTM 666 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~ 666 (788)
...|++++|.+.++++
T Consensus 89 ~~~g~~~eA~~~~~~a 104 (159)
T d1a17a_ 89 MALGKFRAALRDYETV 104 (159)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7777777777766666
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=5.7e-08 Score=88.19 Aligned_cols=102 Identities=9% Similarity=-0.081 Sum_probs=48.3
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 035503 603 DSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPD-AHIIGSLL 679 (788)
Q Consensus 603 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 679 (788)
+...+...+..+.+.|++++|+..|++++.. .|+ +..|..++.+|.+.|++++|+..++++ ...|+ ..+|..++
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 3333444444444455555555555444421 222 334444455555555555555555444 22232 33455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 035503 680 STCVKSNETELAEYISEHLLQLEPDNPG 707 (788)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 707 (788)
.+|...|++++|+..++++++++|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 5555555555555555555555554333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=4.2e-07 Score=79.16 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=95.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHH
Q 035503 571 VYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLL 650 (788)
Q Consensus 571 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 650 (788)
.+...+..+.+.|++++|+..|.+.+..- |.... ..... ......+. ..+|..++.+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~---------~~~~~---~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS---------FSNEE---AQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC---------CCSHH---HHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccc---------cchHH---HhhhchhH--------HHHHHHHHHHH
Confidence 34556667777888888888887766531 11000 00000 01111110 13566788899
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHH
Q 035503 651 SRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVS 726 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 726 (788)
.+.|++++|+..++++ ...| ++.+|..++.+|...|++++|+..|+++++++|+++.+...+..+..+.+...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 3344 67789999999999999999999999999999999999999999987777666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.5e-07 Score=76.32 Aligned_cols=107 Identities=17% Similarity=0.010 Sum_probs=81.4
Q ss_pred HHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHHhhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 035503 609 NILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLLSRCGN---LDEALRVILTM-PCDPDA---HIIGSLLS 680 (788)
Q Consensus 609 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 680 (788)
.+++.+...+++++|.+.|++.+. +.| ++.++..++.+|.+.++ .++|+.+++++ ...|+. .+|..++.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 466677788888888888888874 334 46777788888876554 45688888876 333433 37888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 035503 681 TCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAA 718 (788)
Q Consensus 681 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 718 (788)
+|...|++++|+..++++++++|++..+...+..+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998877776655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=6.3e-07 Score=86.32 Aligned_cols=165 Identities=10% Similarity=-0.000 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHh-CCCHHHHHHHHHHHHHc----CCCCC-H
Q 035503 540 IVTSLVDMYAKCGNIHQAKRVFDISPS-----KE----LPVYNAMISGYAM-HGLAVEALALFKNLQQK----GIDPD-S 604 (788)
Q Consensus 540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~----~~~p~-~ 604 (788)
.+..++.+|.+.|++++|++.++.... .+ ..++..++..|.. .|++++|++.|++..+. +..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 455566666666666666666654322 11 1245556666644 58888888888776542 11111 2
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCc-----chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC------H
Q 035503 605 ITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSM-----EHFGCVVNLLSRCGNLDEALRVILTM-PCDPD------A 672 (788)
Q Consensus 605 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~ 672 (788)
.++..+...+...|++++|+..|+++.....-.+.. ..+...+..+...|+++.|...+++. ...|. .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 346667777888888888888888876542222211 12335555667788888888888887 23222 2
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCC
Q 035503 673 HIIGSLLSTCVK--SNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 673 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p~ 704 (788)
.....++.++.. .+.+++|+..|+++.+++|.
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence 244555555544 24578888888777776654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.1e-08 Score=107.10 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHH--HhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHH
Q 035503 586 VEALALFKNLQQKGIDPDSITFTNILN--ACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRV 662 (788)
Q Consensus 586 ~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 662 (788)
..+++.+++.......++.......+. .....+.++.++..+.... ++.|+ ...+..++..+.+.|+.++|...
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 345555655554333333322221111 1223445555555554332 44443 45556677777777777777665
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 663 ILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 663 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+.+.-......++..++..+...|++++|+..|+++++++|+++.+|+.||.+|...|++.+|...|.+.+...
T Consensus 143 ~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 143 QSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 54431111124566677777777888888888888888888888888888888888888888877777776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=9.9e-06 Score=76.53 Aligned_cols=179 Identities=10% Similarity=-0.050 Sum_probs=113.5
Q ss_pred CCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH--hhccCcHHHHH
Q 035503 552 GNIHQAKRVFDISPS-KELPVYNAMISGYAM----HGLAVEALALFKNLQQKGIDPDSITFTNILNA--CSHAGLVNEGL 624 (788)
Q Consensus 552 g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~ 624 (788)
.+...|...+..... .+...+..+...+.. .++.+.|...+++....|.. ........... .........+.
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~~~~a~ 130 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRDFKKAV 130 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcccchhHHHH
Confidence 345555555543332 233334444433332 45677788888877765521 12111111111 22344566667
Q ss_pred HHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 035503 625 ELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISE 696 (788)
Q Consensus 625 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 696 (788)
..+..... ..+...+..|+..|.. ..+...+..+++......+......++..+.. .++++.|+..|+
T Consensus 131 ~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~ 206 (265)
T d1ouva_ 131 EYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 206 (265)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHh
Confidence 76665532 2445566667777764 45677777777776444567777777777765 579999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHh----CCCcHHHHHHHHHHHHCCC
Q 035503 697 HLLQLEPDNPGNYVALSNAYAA----SGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 697 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 737 (788)
++.+. .++..++.|+.+|.. ..+.++|.++|++..+.|.
T Consensus 207 ~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 207 KACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99887 467899999999986 4589999999999988884
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=3.5e-07 Score=74.01 Aligned_cols=93 Identities=10% Similarity=-0.012 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CchHHHHHHHH
Q 035503 644 GCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPDN--PGNYVALSNAY 716 (788)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 716 (788)
..+++.+...+++++|.+.|+++ . .+.++.++..++.++...+ ++++|+.+++++++.+|.+ ..+++.||.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46788889999999999999998 3 3456678999999987654 5567999999999998874 45899999999
Q ss_pred HhCCCcHHHHHHHHHHHHCC
Q 035503 717 AASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 717 ~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+.|++++|.++|+++++..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998865
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.4e-06 Score=75.71 Aligned_cols=112 Identities=11% Similarity=-0.012 Sum_probs=81.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 685 (788)
.+......+.+.|++++|+..|++++......+...... ......+ -..++..++.+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~------------~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE------------AQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH------------HHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH------------Hhhhchh-------HHHHHHHHHHHHHhh
Confidence 344455567777788888887777765432222211100 0000000 123577788889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 686 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|++++|+..++++++++|+++.++..+|.+|...|++++|...|+++++..
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998865
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.43 E-value=1.1e-06 Score=76.23 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=76.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
.|..++.+|.+.|++++|+..++++ . .+.+...|..++.++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5667888999999999999999888 2 3456678999999999999999999999999999999999999999988777
Q ss_pred CCcH-HHHHHHHHHHH
Q 035503 720 GRWN-EVSQVRDIMKE 734 (788)
Q Consensus 720 g~~~-~A~~~~~~~~~ 734 (788)
+... ...+.+..|.+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 6554 35555666544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.37 E-value=2.6e-06 Score=72.45 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=80.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 035503 606 TFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKS 685 (788)
Q Consensus 606 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 685 (788)
.+..-+..+.+.|++++|+..|.+++......+.... ......... ....++.+++.+|.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--------------QILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--------------HHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--------------HHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 4445556677778888888888777643221111000 000000000 0124677888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 686 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
|++++|+..++++++++|++..+|+.+|.+|...|++++|...|++.++..
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999988764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=8.7e-07 Score=72.82 Aligned_cols=93 Identities=11% Similarity=0.127 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM-P-CDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPG-------NYVALS 713 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 713 (788)
+..++..+.+.|++++|+..|+++ . .+.+..++..++.+|...|++++|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345778888888888888888777 2 2345778999999999999999999999999999998766 455667
Q ss_pred HHHHhCCCcHHHHHHHHHHHHC
Q 035503 714 NAYAASGRWNEVSQVRDIMKEK 735 (788)
Q Consensus 714 ~~~~~~g~~~~A~~~~~~~~~~ 735 (788)
.++...+++++|...+++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 7788889999999999987653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=1.8e-06 Score=73.49 Aligned_cols=129 Identities=9% Similarity=-0.104 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNL 649 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 649 (788)
..+...+..+.+.|++.+|+..|++.+..- |... .............+ ...+|..++.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~~--------~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKNI--------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhhH--------HHHHHhhHHHH
Confidence 356677889999999999999999987631 1110 00000000111111 12467789999
Q ss_pred HhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 035503 650 LSRCGNLDEALRVILTM-PCD-PDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAAS 719 (788)
Q Consensus 650 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 719 (788)
|.+.|++++|++.++++ ... .+..+|..++.++...|++++|+..++++++++|+++.+...+..+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887 333 45689999999999999999999999999999999999988887765543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=2.1e-06 Score=74.74 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
...+..++.++.+.|++++|+..++++++++|+++.+|..+|.+|...|++++|...|+++++..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44677888889999999999999999999999999999999999999999999999999998864
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.25 E-value=7.9e-06 Score=70.70 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.++.+++.+|...|++++|+..++++++++|++..+|..++.+|...|++++|...|+++++..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566788889999999999999999999999999999999999999999999999999998764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=1.8e-06 Score=75.13 Aligned_cols=132 Identities=9% Similarity=0.053 Sum_probs=95.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCC-CcchHHHHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKP-SMEHFGCVVNLL 650 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 650 (788)
+......+...|++.+|++.|++++.. ...........+. . .+.| ....+..++.+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~----~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------A----KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------G----GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------H----HhChhhHHHHHHHHHHH
Confidence 445666777888888888888876542 0000000011000 0 1122 245667889999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHH
Q 035503 651 SRCGNLDEALRVILTM-PCDP-DAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEV 725 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 725 (788)
.+.|++++|+..++++ ...| ++..|..++.++...|++++|+..|+++++++|+++.++..+..++.+.....++
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 4444 4678999999999999999999999999999999999999998887665554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=0.00064 Score=63.49 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhhHHH
Q 035503 398 VVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR----NGQMNEAKDMFLQMQSLGVQPNLITWTT 473 (788)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 473 (788)
+..+..+...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666666777777777777776654 44445455555554 456677777777665553 3333444
Q ss_pred HHHHHHh----CCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhh----ccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 035503 474 LISGLTQ----NSCGNEAILFFQEMLETGIKPSTTTITCALSACT----DVASLRNGRAIHGYLIRHDLCLPTPIVTSLV 545 (788)
Q Consensus 474 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 545 (788)
+...+.. .++.+.|...++.....|... ....+...+. .......+...+...... .+...+..++
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 4333332 345566777777766654211 1111111111 122334444444443332 2334445555
Q ss_pred HHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhc
Q 035503 546 DMYAK----CGNIHQAKRVFDISPS-KELPVYNAMISGYAM----HGLAVEALALFKNLQQKGIDPDSITFTNILNACSH 616 (788)
Q Consensus 546 ~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 616 (788)
..|.. ..+...+...++...+ .+..++..+...|.. ..++++|+.+|++..+.| +...+..|...|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred hhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHc
Confidence 55543 2334444444443322 334444444444443 345555555555555543 23333333333332
Q ss_pred ----cCcHHHHHHHHHhc
Q 035503 617 ----AGLVNEGLELFVGM 630 (788)
Q Consensus 617 ----~g~~~~A~~~~~~~ 630 (788)
..+.++|.++|++.
T Consensus 227 G~g~~~n~~~A~~~~~kA 244 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKG 244 (265)
T ss_dssp TSSSSCCSTTHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHH
Confidence 22444555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=6.8e-06 Score=62.91 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 035503 643 FGCVVNLLSRCGNLDEALRVILTM----P----CDPD-AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALS 713 (788)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 713 (788)
+..++..+.+.|++++|..+|+++ + ..++ ..++..++.++.+.|++++|+..++++++++|+++.++.++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345666666666666666666655 1 1122 467889999999999999999999999999999999999886
Q ss_pred HHH
Q 035503 714 NAY 716 (788)
Q Consensus 714 ~~~ 716 (788)
.+.
T Consensus 88 ~~~ 90 (95)
T d1tjca_ 88 YFE 90 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.02 E-value=1.5e-05 Score=67.89 Aligned_cols=64 Identities=13% Similarity=-0.066 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 673 HIIGSLLSTCVKSNETELAEYISEHLLQLEPDN-----------PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 673 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
.+|+.++.+|...|++++|...+++++++.|+. ..+++.++.+|...|++++|...|++.++..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888888888888765431 2257889999999999999999999987653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=0.0067 Score=57.52 Aligned_cols=231 Identities=11% Similarity=0.034 Sum_probs=90.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCC
Q 035503 403 TLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLRNGQMNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNS 482 (788)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 482 (788)
.++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+...+.+..
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCc
Confidence 34444445555555555544221 13334444445555555444443321 3344544444444443
Q ss_pred CchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHh
Q 035503 483 CGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFD 562 (788)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (788)
...-| .+.......++.....++..|...|.++....+++....... .+...++.++.+|++.+. ++-.+.+.
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~-~~~~~~~~L~~lyak~~~-~kl~e~l~ 156 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKFKP-QKMREHLE 156 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT-CCHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCc-cchHHHHHHHHHHHHhCh-HHHHHHHH
Confidence 33221 111112223333444445555555555555555554443322 344455555555555432 22222232
Q ss_pred hCCC-CCh----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcH
Q 035503 563 ISPS-KEL----------PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMF 631 (788)
Q Consensus 563 ~~~~-~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 631 (788)
.... -|. ..|.-++-.|.+.|++++|+.+.-+ ..++.......+..+.+.++++...+...-.+
T Consensus 157 ~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL 231 (336)
T d1b89a_ 157 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQFYL 231 (336)
T ss_dssp HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHHHHH
Confidence 2111 111 1244445555555555555544322 12333333334444455555544433333332
Q ss_pred hhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 035503 632 SDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILT 665 (788)
Q Consensus 632 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (788)
.. .+.....++......-+..+..+.+++
T Consensus 232 ~~-----~p~~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 232 EF-----KPLLLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HH-----CGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred Hc-----CHHHHHHHHHHhccCCCHHHHHHHHHh
Confidence 21 123334444444444444444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.95 E-value=2.7e-05 Score=67.62 Aligned_cols=112 Identities=11% Similarity=-0.000 Sum_probs=80.9
Q ss_pred HHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCC-hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 035503 610 ILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGN-LDEALRVILTMPCDPDAHIIGSLLSTCVKSNET 688 (788)
Q Consensus 610 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 688 (788)
........|++++|.+.|.+.+.-+.-.+-... ..+. ......-+.. .....+..++..+...|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 334677889999999999988743321111100 0011 1111111111 1234678889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 035503 689 ELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKE 734 (788)
Q Consensus 689 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 734 (788)
++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++..
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999744
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.94 E-value=8.9e-06 Score=68.10 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=75.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhcc----------CcHHHHHHHHHhcHhhcCCCCC-cchHHHHH
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHA----------GLVNEGLELFVGMFSDHQVKPS-MEHFGCVV 647 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 647 (788)
|.+.+.+++|+..|++.++.. +.+...+..+..++... +.+++|+..|+++++ +.|+ ...|..++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 445566777777777777753 33555666666665533 334556666665552 3343 44555555
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHH
Q 035503 648 NLLSRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQ 727 (788)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 727 (788)
.+|...|++. ++.. ...+++++|...|+++++++|++...+..|+... +|.+
T Consensus 83 ~~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHH
T ss_pred HHHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHH
Confidence 5554433211 1100 0123468899999999999999988887777664 5566
Q ss_pred HHHHHHHCCC
Q 035503 728 VRDIMKEKGL 737 (788)
Q Consensus 728 ~~~~~~~~~~ 737 (788)
++.++.++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 6666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=2.8e-05 Score=63.47 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHH
Q 035503 572 YNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLL 650 (788)
Q Consensus 572 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 650 (788)
+..++..+...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..+++++.. .|+ ...+..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~~~~~~~~~~~---- 78 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV---GRENREDYRQI---- 78 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HHHSTTCHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh---CcccHHHHHHH----
Confidence 3445555666666666666666665543 224455555555566666666666666555421 111 1111111
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 035503 651 SRCGNLDEALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPD 704 (788)
Q Consensus 651 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 704 (788)
..++..++..+...+++++|+..+++++..+|+
T Consensus 79 ---------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 79 ---------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ---------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 124556666677778888888888888877765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.92 E-value=2.9e-05 Score=61.54 Aligned_cols=88 Identities=9% Similarity=-0.114 Sum_probs=47.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 035503 474 LISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGN 553 (788)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (788)
+...+.+.|++++|+..|++.+... +-+...+..+..++...|++++|...++++++.+| .+..++..++..|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCC
Confidence 3445555566666666666655531 12344555555555555555555555555555555 445555555555555555
Q ss_pred HHHHHHHHhh
Q 035503 554 IHQAKRVFDI 563 (788)
Q Consensus 554 ~~~A~~~~~~ 563 (788)
+++|++.+++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.88 E-value=5.1e-06 Score=69.66 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC-----------cHHHHHHHHHHHHCCC
Q 035503 686 NETELAEYISEHLLQLEPDNPGNYVALSNAYAASGR-----------WNEVSQVRDIMKEKGL 737 (788)
Q Consensus 686 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~ 737 (788)
+.+++|+..++++++++|+++.+|+.+|.+|...|+ +++|.+.|++.++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 456899999999999999999999999999988764 6889999998887653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=6e-06 Score=85.88 Aligned_cols=106 Identities=10% Similarity=-0.055 Sum_probs=44.1
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 035503 505 TITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPS---KELPVYNAMISGYAM 581 (788)
Q Consensus 505 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 581 (788)
.+..+...+...|+.+.|...+...++..+ ...+..++..+...|++++|+..|++... .+..+|+.|+..+..
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp ---------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344444445555555555555555444322 23445555666666666666666654332 233456666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHh
Q 035503 582 HGLAVEALALFKNLQQKGIDPDSITFTNILNAC 614 (788)
Q Consensus 582 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 614 (788)
.|+..+|+..|.+.+... +|-..++..|...+
T Consensus 199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 666666666666655543 34444455554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.013 Score=55.44 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHh
Q 035503 538 TPIVTSLVDMYAKCGNIHQAKRVFD 562 (788)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (788)
..+.+++...|...++++.-.+..+
T Consensus 280 ~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHH
Confidence 3566667777777776555444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.65 E-value=3.5e-05 Score=71.58 Aligned_cols=129 Identities=10% Similarity=0.025 Sum_probs=88.2
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChH
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLD 657 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 657 (788)
..+.|++++|+..+++.++.. +.|...+..+...++..|++++|...++.+.+ +.|+ ...+..+..++...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 346788999999999888864 34667788888889999999999999988863 4565 344445566665555555
Q ss_pred HHHHHHHhC--CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 658 EALRVILTM--PCDPDA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 658 ~A~~~~~~~--~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
++....... ..+|+. ..+...+..+...|+.++|+..++++.+..|..+..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 544332222 122322 334445566778899999999999999999887766543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.64 E-value=0.00012 Score=62.00 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=44.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 035503 642 HFGCVVNLLSRCGNLDEALRVILTM--------PCDPD-----AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNP 706 (788)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 706 (788)
.|..++.+|...|++++|.+.+++. ...++ ...+..++.+|...|++++|+..|++++++.|+..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3445566666666666666555544 11122 23567788899999999999999999999877643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=5.6e-05 Score=57.57 Aligned_cols=65 Identities=15% Similarity=-0.005 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 672 AHIIGSLLSTCVKSNETELAEYISEHLLQLEPDN-------PGNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 672 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+..+..++..+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|...++++++..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445678999999999999999999999986654 3578999999999999999999999998865
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.36 E-value=0.00042 Score=59.77 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHh----hcCCCCCcchH
Q 035503 570 PVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFS----DHQVKPSMEHF 643 (788)
Q Consensus 570 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 643 (788)
..+..++..+...|++++|+..++++++.. +-+...|..++.+|...|+.++|++.|+++.+ +.|+.|...+-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 457788899999999999999999998864 34778899999999999999999999998743 35888886643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.17 E-value=0.00014 Score=67.30 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=89.5
Q ss_pred hhccCcHHHHHHHHHhcHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHH
Q 035503 614 CSHAGLVNEGLELFVGMFSDHQVKPS-MEHFGCVVNLLSRCGNLDEALRVILTM-PCDPDA-HIIGSLLSTCVKSNETEL 690 (788)
Q Consensus 614 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~ 690 (788)
..+.|++++|+..+++.++ ..|+ ...+..++.+|+..|++++|.+.++.+ ...|+. ..+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 4568999999999999985 3455 688889999999999999999999998 445554 456666666655555554
Q ss_pred HHHHHHHHHh-cCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCC
Q 035503 691 AEYISEHLLQ-LEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGL 737 (788)
Q Consensus 691 A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 737 (788)
+......... .+|++...+...+.++...|++++|...++++.+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 4333222222 2454555666778889999999999999999887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.0019 Score=50.20 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHhCCCcHHHHHHHHHHHHCC
Q 035503 670 PDAHIIGSLLSTCVKSN---ETELAEYISEHLLQLEPDNP-GNYVALSNAYAASGRWNEVSQVRDIMKEKG 736 (788)
Q Consensus 670 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 736 (788)
+...+...+++++.++. +.++|+.+++.+++.+|.+. ..++.|+.+|++.|++++|.++++++++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 45556667777776553 55788888888888888654 677888888888888888888888887755
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.32 Score=48.36 Aligned_cols=321 Identities=10% Similarity=-0.003 Sum_probs=152.1
Q ss_pred HHHhhcCChHHHHHHHHhcccCChhHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCchhH----HHHHHHHHHhcCC
Q 035503 375 DMYAKCERIDNAKQVFNSIILRDVVLWNTLLAAYADLG--RSGEASRLFYQMQLEGISPNIIS----WNSVILGFLRNGQ 448 (788)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~g~ 448 (788)
.-..+.|+...+..+...+..--...|-..-..-...+ ...+...+ +.+ .|+... -...+..+.+.++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~F---l~~---~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNF---VRA---NPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHH---HHH---CTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHH---HHH---CCCChhHHHHHHHHHHHHHhccC
Confidence 33456678888888877774322333433322222222 33333332 233 234332 2334556777788
Q ss_pred HHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCchHHHHHHHH
Q 035503 449 MNEAKDMFLQMQSLGVQPNLITWTTLISGLTQNSCGNEAILFFQEMLETGI-KPSTTTITCALSACTDVASLRNGRAIHG 527 (788)
Q Consensus 449 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 527 (788)
++.....+. ..+.+...-.....+....|+.++|...+..+-..|. .|+ .+..++.
T Consensus 88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~c~~l~~ 144 (450)
T d1qsaa1 88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------ACDKLFS 144 (450)
T ss_dssp HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------HHHHHHH
T ss_pred HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------HHHHHHH
Confidence 766544331 2233455555667778888888888888877765442 222 2223334
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHH
Q 035503 528 YLIRHDLCLPTPIVTSLVDMYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDPDSITF 607 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 607 (788)
...+.|. .+...+-.-+......|+...|..+...++..........+.....-... ..... . ..++....
T Consensus 145 ~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~---~--~~~~~~~~ 215 (450)
T d1qsaa1 145 VWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFAR---T--TGATDFTR 215 (450)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHH---H--SCCCHHHH
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHh---c--CCCChhhh
Confidence 4444444 45555555566666677777777777766554433334444333222111 11111 1 11222222
Q ss_pred HHHHHHhhc--cCcHHHHHHHHHhcHhhcCCCCCcch--HHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 035503 608 TNILNACSH--AGLVNEGLELFVGMFSDHQVKPSMEH--FGCVVNLLSRCGNLDEALRVILTMP-CDPDAHIIGSLLSTC 682 (788)
Q Consensus 608 ~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 682 (788)
..+..++.+ ..+.+.|...+........+.++... ...++..+...+..+.|..++.... ...+.......+...
T Consensus 216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a 295 (450)
T d1qsaa1 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA 295 (450)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH
Confidence 222222222 23455566666555443332222111 1122233334455555555554442 122232223333334
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHH
Q 035503 683 VKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMK 733 (788)
Q Consensus 683 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 733 (788)
...+++..+...+..+-.-....+...+=++.++.+.|+.++|...|..+.
T Consensus 296 l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 445566665555554322111223344555666666666666666666543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.63 Score=46.07 Aligned_cols=330 Identities=9% Similarity=-0.013 Sum_probs=201.3
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHHHhc---CCCCchhHHHHHHHHHHcCCCchhHHHHHHHHHhhcCChHHHHHHHHh
Q 035503 316 LDNVLGSSIINFYSKVGLLEDAEVVFSRM---VERDIVTWNLLIASYVQSGQSDVVVASSIVDMYAKCERIDNAKQVFNS 392 (788)
Q Consensus 316 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (788)
.+...-.....+....|+.+.|...+..+ ....+...+.+...+...|..++...-.-+......|++..|..+...
T Consensus 100 ~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~ 179 (450)
T d1qsaa1 100 GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (450)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh
Confidence 34555566777888888888888877665 224556678888888888888888888888888889999999999887
Q ss_pred cccCChhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCChhh
Q 035503 393 IILRDVVLWNTLLAAYADLGRSGEASRLFYQMQLEGISPNIISWNSVILGFLR--NGQMNEAKDMFLQMQSLGVQPNLIT 470 (788)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~ 470 (788)
+...........+..... ...+.... ... .++......+..++.+ ..+.+.+..++......... +...
T Consensus 180 l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~ 250 (450)
T d1qsaa1 180 MPADYQTIASAIISLANN---PNTVLTFA---RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQ 250 (450)
T ss_dssp CCGGGHHHHHHHHHHHHC---GGGHHHHH---HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHH
T ss_pred CChhHHHHHHHHHHHHhC---hHhHHHHH---hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHH
Confidence 765444444444444332 22222221 111 2333333333333333 35778888888887543221 2222
Q ss_pred HHHH----HHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 035503 471 WTTL----ISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDLCLPTPIVTSLVD 546 (788)
Q Consensus 471 ~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 546 (788)
+..+ ...+...+..+.+...+......+ .+.......+......+++..+...+..+.. .+.........++.
T Consensus 251 ~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~-~~~~~~r~~YW~gR 327 (450)
T d1qsaa1 251 IQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM-EAKEKDEWRYWQAD 327 (450)
T ss_dssp HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT-TGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCc-ccccHHHHHHHHHH
Confidence 2222 223334566788888887777643 3444444445555667888888877776543 22244566788889
Q ss_pred HHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhH-----HHHHHHHhhccCcH
Q 035503 547 MYAKCGNIHQAKRVFDISPSKELPVYNAMISGYAMHGLAVEALALFKNLQQKGIDP-DSIT-----FTNILNACSHAGLV 620 (788)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~-----~~~ll~~~~~~g~~ 620 (788)
++...|+.++|...|..+.... +|-.++.+-.-...+.- -.....+ .... -...+..+...|+.
T Consensus 328 a~~~~G~~~~A~~~~~~~a~~~--~fYG~LAa~~Lg~~~~~--------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~ 397 (450)
T d1qsaa1 328 LLLERGREAEAKEILHQLMQQR--GFYPMVAAQRIGEEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWNLD 397 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--SHHHHHHHHHTTCCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCH
T ss_pred HHHHcCChhhHHHHHHHHhcCC--ChHHHHHHHHcCCCCCC--------CcCCCCccHHHhhhcChHHHHHHHHHHcCCc
Confidence 9999999999999998766532 34444332221111100 0000000 0011 11234457788999
Q ss_pred HHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC
Q 035503 621 NEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDEALRVILTMPCDPD 671 (788)
Q Consensus 621 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 671 (788)
.+|...+..+.. . .+......++....+.|.++.|+....+.....+
T Consensus 398 ~~A~~e~~~l~~--~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~d~ 444 (450)
T d1qsaa1 398 NTARSEWANLVK--S--KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDH 444 (450)
T ss_dssp HHHHHHHHHHHT--T--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTC
T ss_pred hHHHHHHHHHHh--C--CCHHHHHHHHHHHHHCCChhHHHHHHHHHHccCc
Confidence 999999887754 2 3455666778888999999999988888754433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.22 E-value=0.023 Score=45.68 Aligned_cols=81 Identities=9% Similarity=-0.067 Sum_probs=50.4
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCCcHHHH
Q 035503 655 NLDEALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEPDNPGNYVALSNAYAA----SGRWNEVS 726 (788)
Q Consensus 655 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 726 (788)
+.++|.+++++.....++.....++..|.. ..|.++|...++++.+. .++.....|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHH
Confidence 344444444444222233444444444432 35677888888887664 456677888888876 45788888
Q ss_pred HHHHHHHHCCC
Q 035503 727 QVRDIMKEKGL 737 (788)
Q Consensus 727 ~~~~~~~~~~~ 737 (788)
.++++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88888887774
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.17 E-value=0.11 Score=39.29 Aligned_cols=141 Identities=12% Similarity=0.092 Sum_probs=92.1
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 035503 579 YAMHGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSRCGNLDE 658 (788)
Q Consensus 579 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 658 (788)
+...|..++..++..+.... .+..-|+.++--....-+-+-..+.++..-+-+.+.|-.. ...++.++.+.+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc---
Confidence 34466777777777766553 2445555555544455555555555555533333322211 1223333333332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCcHHHHHHHHHHHHCCCc
Q 035503 659 ALRVILTMPCDPDAHIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVALSNAYAASGRWNEVSQVRDIMKEKGLR 738 (788)
Q Consensus 659 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 738 (788)
+.....-.+....++|+-+.-.++++.+++.+.-+|.....++.+|.+.|...++.++++++-++|.+
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33455556777888999999999999988876667999999999999999999999999999999975
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.35 E-value=0.057 Score=41.60 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=54.1
Q ss_pred CCcchHHHHHHHHhhcC---ChHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 035503 638 PSMEHFGCVVNLLSRCG---NLDEALRVILTM-PCDP-DA-HIIGSLLSTCVKSNETELAEYISEHLLQLEPDNPGNYVA 711 (788)
Q Consensus 638 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 711 (788)
|+..+--..++++.+.. +.++++.+++++ ...| +. ..+..++-+|.+.|++++|+..++++++++|++..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 44455556777777654 455777777776 2233 33 577888899999999999999999999999998665443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.28 E-value=0.11 Score=41.40 Aligned_cols=112 Identities=8% Similarity=-0.093 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHhhccCcHHHHHHHHHhcHhhcCCCCCcchHHHHHHHHhh----cCChHH
Q 035503 583 GLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGMFSDHQVKPSMEHFGCVVNLLSR----CGNLDE 658 (788)
Q Consensus 583 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 658 (788)
.++++|+++|++..+.| .+ .....|. .....+.++|++++++..+. -++.....|+..|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g-~~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~----g~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN-EM--FGCLSLV--SNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTT-CT--THHHHHH--TCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCC-Ch--hhhhhhc--cccccCHHHHHHHHhhhhcc----cchhhhhhHHHhhhhccccchhhHH
Confidence 36778888888887776 22 2223332 34456788888888887542 245556667777654 457889
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 035503 659 ALRVILTMPCDPDAHIIGSLLSTCVK----SNETELAEYISEHLLQLEP 703 (788)
Q Consensus 659 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 703 (788)
|.++|++.....++.....|+..|.. ..|.++|...++++.+...
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999888444456666677777654 4689999999999887654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.13 E-value=2.9 Score=31.52 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHcCC
Q 035503 470 TWTTLISGLTQNSCGNEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRHDL 534 (788)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 534 (788)
.....++.+..+|+-+.-.++++++.+. -+|++..+..+..+|.+.|...++..++.++.+.|.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3444455666666666666666665553 366666666677777777777777777777666665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.34 E-value=7.9 Score=27.53 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHc
Q 035503 485 NEAILFFQEMLETGIKPSTTTITCALSACTDVASLRNGRAIHGYLIRH 532 (788)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 532 (788)
-++..-++.+....+.|++....+.+.+|.+.+++..|.++++-+...
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345556666666667777777777777777777777777777766654
|