Citrus Sinensis ID: 035514

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
MEEPALNGALPYEDYAPVKNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQATERMQKWGGQTSTIPS
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccc
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccc
meepalngalpyedyapvknLKEARSVLRTETVKMWKIAGPVVFNLLCLygtnsftnIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCkdgwhgltwAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVsnelgmgrpraaKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKlgvtglwsgmiCGTALQTLLLLIVLYRTNWSREVEQATERMQkwggqtstips
meepalngalpyedyapvkNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQATermqkwggqtstips
MEEPALNGALPYEDYAPVKNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSlligllfmiiillTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTAlqtllllivlYRTNWSREVEQATERMQKWGGQTSTIPS
***********YEDYAPVKNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSRE********************
***********************ARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQ*****************
MEEPALNGALPYEDYAPVKNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREV*******************
******************KNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQATERMQKWG********
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEEPALNGALPYEDYAPVKNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQATERMQKWGGQTSTIPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query482 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.914 0.869 0.399 3e-91
Q9LUH2477 MATE efflux family protei no no 0.950 0.960 0.333 3e-63
Q9LUH3469 MATE efflux family protei no no 0.869 0.893 0.345 3e-62
Q9SIA4476 MATE efflux family protei no no 0.966 0.978 0.319 1e-60
Q9SIA3476 MATE efflux family protei no no 0.966 0.978 0.313 5e-60
Q8GXM8476 MATE efflux family protei no no 0.966 0.978 0.307 4e-59
Q9SIA5476 MATE efflux family protei no no 0.966 0.978 0.309 6e-59
Q9SIA1477 MATE efflux family protei no no 0.962 0.972 0.308 3e-56
Q8RWF5483 MATE efflux family protei no no 0.962 0.960 0.303 1e-54
Q8K0H1567 Multidrug and toxin extru yes no 0.883 0.751 0.303 4e-50
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  336 bits (861), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/443 (39%), Positives = 279/443 (62%), Gaps = 2/443 (0%)

Query: 31  ETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMG 90
           E+  +W ++G  +   +  Y  +  T +F GH+G ++L+ A+I+   I   ++G++LGM 
Sbjct: 51  ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMA 110

Query: 91  SALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKL 150
           SA++T+CGQA+GA     +G+  QR+ ++     +FL  +Y +S PILK +GQ   IA  
Sbjct: 111 SAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHE 170

Query: 151 AGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGT 210
              F    IPQ+++ A++ P Q+FLQAQ+ V+  A +     +LH +L ++      +G 
Sbjct: 171 GQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGL 230

Query: 211 AGAAIAYDISSWIISIAQVIYVI--GWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLE 268
            GAA+    S W++     +Y++    CK+ W G +  AF  IW + +L++ASAVMLCLE
Sbjct: 231 LGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLE 290

Query: 269 IWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRA 328
           IWY   ++I++G L N  I++ ++SICM    W +   +G++AAISVRVSNELG G PR 
Sbjct: 291 IWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRV 350

Query: 329 AKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSV 388
           A  SV V    ++LI  +  +I+L+ +   +  FTS  E+  A S +  LL +++ LN +
Sbjct: 351 AMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGI 410

Query: 389 QPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTL 448
           QP+LSGVAIG GWQA+VAY+N+ +YY+ GLP+G +LG++  LGV G+W GMI G  LQTL
Sbjct: 411 QPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTL 470

Query: 449 LLLIVLYRTNWSREVEQATERMQ 471
            L+++  +TNW+ EVE A +R++
Sbjct: 471 TLIVLTLKTNWTSEVENAAQRVK 493
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
255545210489 multidrug resistance pump, putative [Ric 0.993 0.979 0.767 0.0
359490480489 PREDICTED: protein TRANSPARENT TESTA 12- 0.987 0.973 0.724 0.0
312282213488 unnamed protein product [Thellungiella h 0.970 0.959 0.730 0.0
225544292493 anthocyanin permease 1 [Vitis vinifera] 0.985 0.963 0.700 0.0
225464547543 PREDICTED: protein TRANSPARENT TESTA 12 0.985 0.874 0.702 0.0
302143812493 unnamed protein product [Vitis vinifera] 0.985 0.963 0.702 0.0
225464543489 PREDICTED: protein TRANSPARENT TESTA 12 0.960 0.946 0.712 0.0
302143816518 unnamed protein product [Vitis vinifera] 0.960 0.893 0.712 0.0
225380907489 putative anthocyanin permease [Vitis vin 0.960 0.946 0.712 0.0
297799434489 mate efflux family protein [Arabidopsis 0.981 0.967 0.731 0.0
>gi|255545210|ref|XP_002513666.1| multidrug resistance pump, putative [Ricinus communis] gi|223547574|gb|EEF49069.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/482 (76%), Positives = 423/482 (87%), Gaps = 3/482 (0%)

Query: 1   MEEPALNGAL---PYEDYAPVKNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTN 57
           ME P L  +L     EDY PVK+ K+ +SV  TETVK+WKIA P+VFN++C YG NS TN
Sbjct: 1   MEAPLLTPSLSAGDDEDYTPVKSFKDIKSVFWTETVKIWKIATPIVFNIMCQYGINSVTN 60

Query: 58  IFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSW 117
           IFVGHIG+ ELS+ AISLSVIGTFSFG +LGMGSALETLCGQAFGAG VHMLG+YMQRSW
Sbjct: 61  IFVGHIGDFELSAVAISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGIYMQRSW 120

Query: 118 LILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQA 177
           +ILW+TCIFLLPIY+F+ PILKLLGQ+D +A LAG+FTIL IPQLFSLA++FPTQKFLQA
Sbjct: 121 IILWITCIFLLPIYVFATPILKLLGQEDSVADLAGQFTILIIPQLFSLAVNFPTQKFLQA 180

Query: 178 QSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCK 237
           QSKV   A IGFVA ILHI LL++ IY FGWGT+GAAIAYDI++W +SIAQV+YVIGWCK
Sbjct: 181 QSKVRVLAWIGFVAFILHIPLLWLLIYVFGWGTSGAAIAYDITNWGMSIAQVVYVIGWCK 240

Query: 238 DGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMN 297
           +GW GL+ +AF +IWAFVRLSLASAVMLCLEIWYM SII+LTGHLDNA+IAVGSLSICMN
Sbjct: 241 EGWTGLSSSAFKEIWAFVRLSLASAVMLCLEIWYMMSIIVLTGHLDNAVIAVGSLSICMN 300

Query: 298 LNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDY 357
            NGW  MLF+G+NAAISVRVSNELG G PRAAKYSVYVT+FQS LIGLL M+IIL+TKD+
Sbjct: 301 FNGWEAMLFIGVNAAISVRVSNELGSGHPRAAKYSVYVTIFQSFLIGLLSMVIILITKDH 360

Query: 358 FAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFG 417
           FAIIFT+SK +Q A SK+AFLLGITMVLNS+QPV+ GVAIG GWQALVAYINIG YYIFG
Sbjct: 361 FAIIFTNSKAMQVAVSKLAFLLGITMVLNSIQPVIGGVAIGSGWQALVAYINIGCYYIFG 420

Query: 418 LPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQATERMQKWGGQT 477
           LPLG+ LGY+ KLGV GLW GMI GTALQTLLLLIVLYRTNW++EVEQ +ER++KWGGQ 
Sbjct: 421 LPLGFFLGYKTKLGVAGLWGGMIAGTALQTLLLLIVLYRTNWNKEVEQTSERVRKWGGQE 480

Query: 478 ST 479
           +T
Sbjct: 481 NT 482

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359490480|ref|XP_002272620.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|312282213|dbj|BAJ33972.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|225544292|gb|ACN91542.1| anthocyanin permease 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464547|ref|XP_002272692.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143812|emb|CBI22673.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464543|ref|XP_002272583.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143816|emb|CBI22677.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225380907|gb|ACN88706.1| putative anthocyanin permease [Vitis vinifera] Back     alignment and taxonomy information
>gi|297799434|ref|XP_002867601.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297313437|gb|EFH43860.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.956 0.850 0.637 2.3e-165
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.983 0.951 0.469 4e-122
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.923 0.919 0.497 1.1e-121
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.958 0.885 0.464 2.9e-119
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.977 0.942 0.461 3.7e-119
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.964 0.902 0.444 1.9e-115
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.919 0.911 0.465 1.2e-106
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.933 0.889 0.442 3.6e-105
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.910 0.876 0.439 5.4e-102
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.910 0.872 0.435 3.8e-101
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
 Identities = 294/461 (63%), Positives = 369/461 (80%)

Query:    14 DYAPVKNLKEARSVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAI 73
             D+ P+++ ++A+ V   ET K+W+IA P+ FN+LC YG NSFT+IFVGHIG++ELS+ AI
Sbjct:    71 DFPPIQSFRDAKLVCVVETSKLWEIAAPIAFNILCNYGVNSFTSIFVGHIGDLELSAVAI 130

Query:    74 SLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLF 133
             +LSV+  FSFG LLGM SALETLCGQAFGAG + MLGVYMQRSWLIL  T + LLP+Y++
Sbjct:   131 ALSVVSNFSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLLPLYIY 190

Query:   134 SAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALI 193
             + P+L LLGQ+ EIA+++GKFT   IPQ+F+LAI+FPTQKFLQ+QSKV   A IGF AL 
Sbjct:   191 ATPLLILLGQEPEIAEISGKFTTQIIPQMFALAINFPTQKFLQSQSKVGIMAWIGFFALT 250

Query:   194 LHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWA 253
             LHI +LY+FI  F WG  GAA A+D+S+W I+IAQV+YV+GWCKDGW GL+W AF D+W 
Sbjct:   251 LHIFILYLFINVFKWGLNGAAAAFDVSAWGIAIAQVVYVVGWCKDGWKGLSWLAFQDVWP 310

Query:   254 FVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAI 313
             F++LS ASAVMLCLEIWY  +II+LTGHL++ +IAVGSLSICMN+NGW  MLF+GINAAI
Sbjct:   311 FLKLSFASAVMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFIGINAAI 370

Query:   314 SVRVSNELGMGRPRAAKYSVYVTVFQSXXXXXXXXXXXXXTKDYFAIIFTSSKELQRAAS 373
             SVRVSNELG G PRAAKYSV VTV +S             T+D FA+IFT S+E+++A +
Sbjct:   371 SVRVSNELGSGHPRAAKYSVIVTVIESLVIGVVCAIVILITRDDFAVIFTESEEMRKAVA 430

Query:   374 KIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVT 433
              +A+LLGITM+LNS+QPV+SGVA+GGGWQA VAYIN+  YY FGLPLG+LLGY+  LGV 
Sbjct:   431 DLAYLLGITMILNSLQPVISGVAVGGGWQAPVAYINLFCYYAFGLPLGFLLGYKTSLGVQ 490

Query:   434 GLWSGMICGTAXXXXXXXXXXYRTNWSREVEQATERMQKWG 474
             G+W GMICGT+          Y TNW++EVEQA+ERM++WG
Sbjct:   491 GIWIGMICGTSLQTLILLYMIYITNWNKEVEQASERMKQWG 531
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009860 "pollen tube growth" evidence=RCA
GO:0030048 "actin filament-based movement" evidence=RCA
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-152
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 6e-53
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-50
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 5e-47
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-37
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 7e-32
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 9e-30
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 5e-29
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-28
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 1e-27
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 8e-25
pfam01554161 pfam01554, MatE, MatE 1e-24
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-23
pfam01554161 pfam01554, MatE, MatE 1e-21
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-20
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 2e-13
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-11
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 4e-11
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 7e-11
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-10
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 5e-10
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 5e-10
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-07
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 5e-07
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-05
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 5e-05
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 5e-05
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 8e-05
PRK09575453 PRK09575, vmrA, multidrug efflux pump VmrA; Review 1e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 4e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.001
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 0.001
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  439 bits (1131), Expect = e-152
 Identities = 175/437 (40%), Positives = 279/437 (63%), Gaps = 3/437 (0%)

Query: 31  ETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMG 90
           E  K+ ++A P+V   L  Y  +  + +FVGH+G++EL++A+++ S      F +LLG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 91  SALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKL 150
           SAL+TLCGQAFGA +  ++GVY+QR+ +IL + C+ +  ++L + PIL LLGQD EIA+L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 151 AGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGT 210
           AG++    IP LF+ A+  P +++LQAQ  V     I  VAL+L+I+L Y+ ++  G G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 211 AGAAIAYDISSWIISIAQVIYVIGW--CKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLE 268
            GAA+A  IS W+I +  ++Y+      K  W G +  AF     F++L++ SA+MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 269 IWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRA 328
            W    +++L G L    +A+ + SIC+     + M+ +GI+ A SVRV NELG G P+ 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 329 AKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSV 388
           AK +  V +  SL+IG++  I++L+ +D +A +FTS +E+    + +  +L +  + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 389 QPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTL 448
           Q VLSGV  G G Q L AY+N+ +YY+ GLP+G LL +   LG+ GLW G+I G  LQ +
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 449 LLLIVLYRTNWSREVEQ 465
           +LL+++ RT+W +E E+
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|236576 PRK09575, vmrA, multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 482
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.98
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
PRK00187464 multidrug efflux protein NorA; Provisional 99.9
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
PRK01766 456 multidrug efflux protein; Reviewed 99.87
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
TIGR01695502 mviN integral membrane protein MviN. This model re 99.83
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.8
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.78
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.78
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.75
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.75
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.73
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.72
PRK10459492 colanic acid exporter; Provisional 99.7
PRK15099416 O-antigen translocase; Provisional 99.66
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.62
COG2244480 RfbX Membrane protein involved in the export of O- 99.56
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.27
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.27
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.25
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.01
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.5
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.46
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.18
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.15
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.07
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.89
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.79
COG4267467 Predicted membrane protein [Function unknown] 97.48
PF05975 386 EcsB: Bacterial ABC transporter protein EcsB; Inte 85.94
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-57  Score=441.51  Aligned_cols=435  Identities=26%  Similarity=0.416  Sum_probs=408.2

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcc
Q 035514           28 LRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVH  107 (482)
Q Consensus        28 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~  107 (482)
                      .++..|+++++++|++++++.+.+++++|+.++||+|++++++.+++.++...+ +.+..|++.+..+.+||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            556899999999999999999999999999999999999999999999999876 6699999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 035514          108 MLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFAL  186 (482)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  186 (482)
                      ++++..++++.+.++++++..++ +.+.+|++.+++.++|+.+.+.+|+++..++.|+..+..+..+++|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999777755 89999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHhhhc---ccccCCCCHHHHHHHHHHHHHHhHH
Q 035514          187 IGFVALILHIVLLYVFIYA-FG-WGTAGAAIAYDISSWIISIAQVIYVIGWC---KDGWHGLTWAAFTDIWAFVRLSLAS  261 (482)
Q Consensus       187 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~  261 (482)
                      .++++.++|+++|++++++ ++ +|+.|+++||++++.+..++..+++.|+.   .....+..+.+++.+||+++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 99999999999999999999999888443   2222233334457899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 035514          262 AVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSL  341 (482)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (482)
                      +++++.+...+...+.+++++|++  ++++|+++.++.++..+++.|++++.+|.+++++|+||++++++..+.+..++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999954  566999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHH
Q 035514          342 LIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLG  421 (482)
Q Consensus       342 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  421 (482)
                      .+++..++.+++++++++++|++|+++.+.+..++++.++..++++++.+..+++|+.||+|.++..++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Q 035514          422 YLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQA  466 (482)
Q Consensus       422 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (482)
                      +++.+.. +|..|+|+++.+++.++..+..+++++.+|+++..+.
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            9998876 8999999999999999999999999999898775544

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-18
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 3e-10
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 189/434 (43%), Gaps = 30/434 (6%)
Query: 29  RTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSV-IGTFSFGLLL 87
           + E   + K+A PV+   +   G      I  G +  I++++ +I+ S+ + +  FG+  
Sbjct: 8   KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGV-- 65
Query: 88  GMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEI 147
           G+  AL  +  Q  GAG  H +   + +  ++  +  + ++ +   +  I++ +  ++ +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 148 A-KLAGKF--TILTIPQ--LFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVF 202
           A K  G     I  +P   LF    SF     L   + V     IGF+ L+L+I L ++F
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV-----IGFIGLLLNIPLNWIF 180
Query: 203 IYA-FG---WGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAF-----TDIWA 253
           +Y  FG    G  G  +A  I  WI+ +  + Y++   K   H   +  F      ++  
Sbjct: 181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVT-SKRLAHVKVFETFHKPQPKELIR 239
Query: 254 FVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAI 313
             RL    A  L  E+     + +L   L + ++A  +  + +N +  V M  + I AA+
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAV 297
Query: 314 SVRVSNELGMGRPRAAKYSVYVTVFQSXXXXXXXXXXXXXTKDYFAIIFTSSKELQRAAS 373
           S+RV ++LG    + A  +  V +                 ++  A+++T ++ +   A 
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357
Query: 374 KIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGY-----RA 428
           ++     I   +++VQ V +G   G      + +    SY++ GLP GY+LG        
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417
Query: 429 KLGVTGLWSGMICG 442
            LG  G W G I G
Sbjct: 418 PLGAKGFWLGFIIG 431
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 9e-73
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  236 bits (604), Expect = 9e-73
 Identities = 94/442 (21%), Positives = 191/442 (43%), Gaps = 16/442 (3%)

Query: 28  LRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLL 87
            + E   + K+A PV+   +   G      I  G +  I++++ +I+ S+         +
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGV 65

Query: 88  GMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEI 147
           G+  AL  +  Q  GAG  H +   + +  ++  +  + ++ +   +  I++ +  ++ +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 148 AKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIY-AF 206
           A     +    I  + +  +    + F    S      +IGF+ L+L+I L ++F+Y  F
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185

Query: 207 G---WGTAGAAIAYDISSWIISIAQVIYVIGW----CKDGWHGLTWAAFTDIWAFVRLSL 259
           G    G  G  +A  I  WI+ +  + Y++          +         ++    RL  
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245

Query: 260 ASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSN 319
             A  L  E+     + +L   L + ++A  +  + +N +  V M  + I AA+S+RV +
Sbjct: 246 PVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVGH 303

Query: 320 ELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLL 379
           +LG    + A  +  V +   L    +  ++ +L ++  A+++T ++ +   A ++    
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363

Query: 380 GITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGY-----RAKLGVTG 434
            I   +++VQ V +G   G      + +    SY++ GLP GY+LG         LG  G
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 423

Query: 435 LWSGMICGTALQTLLLLIVLYR 456
            W G I G +   L+L   LY 
Sbjct: 424 FWLGFIIGLSAAALMLGQRLYW 445

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.85
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=9.6e-49  Score=389.52  Aligned_cols=428  Identities=22%  Similarity=0.391  Sum_probs=390.5

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514           27 VLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV  106 (482)
Q Consensus        27 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~  106 (482)
                      ..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++.... ..+..|++++..+.+++++|++|+
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~   84 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ   84 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence            3457899999999999999999999999999999999999999999999997765 457889999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 035514          107 HMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFAL  186 (482)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  186 (482)
                      ++.++.+++++.+..+.+++..+++.+.+|++.+++.+++..+.+..|+++.+++.++..+.....+.+|+.||++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999988776678889998888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-c---CCccchhHHHHHHHHHHHHHHHHHHHhhhcccc----cCCCCHHHHHHHHHHHHHH
Q 035514          187 IGFVALILHIVLLYVFIYA-F---GWGTAGAAIAYDISSWIISIAQVIYVIGWCKDG----WHGLTWAAFTDIWAFVRLS  258 (482)
Q Consensus       187 ~~~~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  258 (482)
                      .++++.++|++++++++.. +   ++|+.|+++++.+++.+..++..++++|+.+..    +++..+.+++..|++++++
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999975 3   699999999999999999998887776432211    1222223346789999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 035514          259 LASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVF  338 (482)
Q Consensus       259 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (482)
                      +|..++++.......+++.+++++|++  ++++|+++.++.++..++..+++++..|.+++++|++|.+++++..+++.+
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999754  567999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHH
Q 035514          339 QSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGL  418 (482)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  418 (482)
                      +...++++.++++.++++++.++|++|+++.+.+.+++++++++.++++++....+++++.||+|.+++.++++.|++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  402 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL  402 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc----cC-CCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 035514          419 PLGYLLGYR----AK-LGVTGLWSGMICGTALQTLLLLIVLYRT  457 (482)
Q Consensus       419 ~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~  457 (482)
                      |+++++.+.    ++ +|+.|+|+++.+++.+..++..++++|.
T Consensus       403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887    66 8999999999999999888776665553
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00