Citrus Sinensis ID: 035528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
DICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAVIATAPRH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHcHHccHHHHHHHHHHHccccccccccccccccccccccHHHHHEEEEEEHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHEHHHHHcccEEHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
DICDDIIDVHLKALDDLVNVNSLFTIAVFVGLsfasrdqrslddrlecdpdvsvgkRLILYEVISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKlegpfknillSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAVIATAPRH
Flexible Loop (DISEMBL)
DICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSfasrdqrslddrlecdpdvsvGKRLILYEVISFACFLMSSLCSKSLKVLINLKkikrkiklkriqklegpfknilLSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAVIATAPRH
Low Complexity Region (SEG)
DICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFACFLMSSLCSkslkvlinlkkikrkiklkriqklEGPFKNILLSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVllslllYAPSMVFAVIATAPRH
Disordered region (IsUnstruct)
*ICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAVIAT****
Disordered Region (DISOPRED)
****DIIDVHLKALDDLVNVNSLFTIAVFVGLSFASR**********CDPDVSVGKRLILYEVISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAVIATAP**
Disordered Region (DISEMBL)
DICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAVIATAPRH
Disordered Region (DISPRO)
***DDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAVIATAPR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAVIATAPRH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
224129354	183	predicted protein [Populus trichocarpa]	0.855	0.874	0.550	1e-40
224129358	157	predicted protein [Populus trichocarpa]	0.828	0.987	0.559	1e-39
255572682	214	conserved hypothetical protein [Ricinus	0.914	0.799	0.494	6e-28
359483236	169	PREDICTED: uncharacterized protein LOC10	0.839	0.928	0.436	4e-26
148906198	190	unknown [Picea sitchensis]	0.866	0.852	0.430	3e-25
147780461	184	hypothetical protein VITISV_019841 [Viti	0.839	0.853	0.436	3e-25
225443333	178	PREDICTED: uncharacterized protein LOC10	0.823	0.865	0.378	7e-24
225470397	194	PREDICTED: uncharacterized protein LOC10	0.860	0.829	0.444	1e-22
302142572	217	unnamed protein product [Vitis vinifera]	0.834	0.718	0.36	1e-22
18397969	189	uncharacterized protein [Arabidopsis tha	0.860	0.851	0.450	3e-22

>gi|224129354|ref|XP_002320566.1| predicted protein [Populus trichocarpa] gi|222861339|gb|EEE98881.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/178 (55%), Positives = 123/178 (69%), Gaps = 18/178 (10%)

Query: 5   DIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVI 64
           D  +++ KALDDLVNVNSLFTIAVFVGLS A   +RSL+DR ECD D  V KRL+++EVI
Sbjct: 14  DTTEIYQKALDDLVNVNSLFTIAVFVGLSLAHPGERSLEDRTECDADPDVAKRLVVFEVI 73

Query: 65  SFACFLMSSLCSKSLKVLINLKKIK--RKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSI 122
           SFA FL+SSL +K+LKV +N+ + K  R IKLK I                R  +L+LS 
Sbjct: 74  SFAFFLLSSLVAKTLKVHLNVYRQKNPRTIKLKII----------------RGSMLLLSA 117

Query: 123 VASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAV 180
             S  G VF+T+SMV+VIQ+KVGKLSCGSVYA  +  SL  IVLL+L +Y P M+ A+
Sbjct: 118 WGSIFGCVFLTMSMVDVIQIKVGKLSCGSVYAFRAAGSLIAIVLLALGIYVPFMMHAI 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129358|ref|XP_002320567.1| predicted protein [Populus trichocarpa] gi|222861340|gb|EEE98882.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 119/168 (70%), Gaps = 13/168 (7%)

Query: 13  ALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFACFLMS 72
           ALDDLVNVNSLFTIAVFVGLS ASR+Q SL++R ECD    V KRL+++EVISFACFL+S
Sbjct: 1   ALDDLVNVNSLFTIAVFVGLSVASRNQYSLENRRECDAGPEVAKRLVVFEVISFACFLLS 60

Query: 73  SLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIGIVFV 132
           SL +KSLKV +N         L R  K EG        G  R    + S++AS  GIV +
Sbjct: 61  SLIAKSLKVFLN---------LFRPHKFEGH----RFFGWARGVAFLSSVMASTTGIVLL 107

Query: 133 TLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAV 180
           TLSM +V+Q+KVGKLSCGS Y++T+VA+L  IV + +L+Y PSM+F +
Sbjct: 108 TLSMADVVQIKVGKLSCGSYYSVTAVATLSVIVFIGVLIYLPSMLFTI 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572682|ref|XP_002527274.1| conserved hypothetical protein [Ricinus communis] gi|223533367|gb|EEF35118.1| conserved hypothetical protein [Ricinus communis]

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 127/178 (71%), Gaps = 7/178 (3%)

Query: 4   DDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQ-RSLD-DRLECDPDVSVGKRLILY 61
           +DI D+ LKALDDLV+VNSLFT+AVF+GLSFAS DQ +SL+ +R ECDPD  +GK+L++Y
Sbjct: 28  EDIKDILLKALDDLVSVNSLFTVAVFLGLSFASPDQLKSLEVNRPECDPDEKMGKQLVVY 87

Query: 62  EVISFACFLMSSLCSKSLKVLINL---KKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLL 118
           EV+SF+ FL+SSL +KSLK+ ++L   K  K        + +E     I  +G  R F+ 
Sbjct: 88  EVVSFSSFLLSSLVAKSLKLFLSLFYSKTTKCGKCDGETEDIEEKKDPIFHAG--RGFMY 145

Query: 119 VLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSM 176
            LSI+AS +G+VF+T+SM  V+++KVG+ SC      T+V +LC +V L+L++Y PS+
Sbjct: 146 SLSILASIVGVVFLTISMAYVVEMKVGRFSCDIRETRTAVIALCVLVPLALVVYIPSV 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483236|ref|XP_003632925.1| PREDICTED: uncharacterized protein LOC100852805 [Vitis vinifera]

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 117/172 (68%), Gaps = 15/172 (8%)

Query: 7   IDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISF 66
           I ++ + LDDLVNVNSLFTIAVF+GL+++S D+ SLDDR EC    S+ +RL++YEV+SF
Sbjct: 4   ISLYERGLDDLVNVNSLFTIAVFIGLAYSSPDEESLDDRAECQAGTSIKRRLVIYEVVSF 63

Query: 67  ACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASF 126
           + FL+SSL +K+LK+ IN+ K + K K  R+                R  +L L+ + S 
Sbjct: 64  SFFLLSSLVAKTLKMHINIFKDEFKSKFCRVL---------------RCVMLTLAALGSV 108

Query: 127 IGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVF 178
           +G +F+ LSM+++I+V++GKLSCGS  +  +  +L  +V ++LL Y P++V+
Sbjct: 109 VGCLFLLLSMIHLIEVRLGKLSCGSPSSWIAAGTLITVVSVALLFYLPTVVY 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148906198|gb|ABR16255.1| unknown [Picea sitchensis]

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 107/172 (62%), Gaps = 10/172 (5%)

Query: 8   DVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFA 67
            VH+ ALD LVNVNSLFT+AVFVGLS A+  QRSL+D   C+    + K L+++EV SF+
Sbjct: 26  SVHVTALDGLVNVNSLFTVAVFVGLSLATPGQRSLEDSGACNAGEDIVKNLLIFEVTSFS 85

Query: 68  CFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFI 127
            FL SSL ++ LK+ I    I    +L   + ++G   N LL    RL +L  S + S +
Sbjct: 86  AFLFSSLIAQGLKLAI---IINNSNELH--EAMKGHINNKLL----RLGMLA-SAIGSIM 135

Query: 128 GIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFA 179
           G VF+ LSMVNVIQ+++G LSCG    + +   L  +V  +L +Y  ++++A
Sbjct: 136 GCVFLMLSMVNVIQIRLGVLSCGGSSTVRATLVLVALVSTALAIYISTVIYA 187

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780461|emb|CAN74914.1| hypothetical protein VITISV_019841 [Vitis vinifera]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 116/172 (67%), Gaps = 15/172 (8%)

Query: 7   IDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISF 66
           I ++   LDDLVNVNSLFTIAVF+GL+++S D+ SLDDR EC    S+ +RL++YEV+SF
Sbjct: 4   ISLYEXGLDDLVNVNSLFTIAVFIGLAYSSPDEESLDDRAECXAGTSIKRRLVIYEVVSF 63

Query: 67  ACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASF 126
           + FL+SSL +K+LK+ IN+ K + K K  R+                R  +L L+ + S 
Sbjct: 64  SFFLLSSLVAKTLKMHINIFKDEFKSKFCRV---------------LRCVMLTLAALGSV 108

Query: 127 IGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVF 178
           +G +F+ LSM+++I+V++GKLSCGS  +  +  +L  +V ++LL Y P++V+
Sbjct: 109 VGCLFLLLSMJHLIEVRLGKLSCGSPSSWIAAGTLIXVVSVALLFYLPTVVY 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443333|ref|XP_002263564.1| PREDICTED: uncharacterized protein LOC100246222 [Vitis vinifera] gi|297735781|emb|CBI18468.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 113/177 (63%), Gaps = 23/177 (12%)

Query: 6   IIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVIS 65
           ++ ++ + LDD++N+N+LFT AVF+GLSF S    +L+ R EC PD  + KRL+++EV+S
Sbjct: 14  MLSIYKEGLDDIININTLFTSAVFIGLSF-SNTTETLESREECKPDTGIAKRLVIFEVLS 72

Query: 66  FACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVAS 125
           F+ FL+S+L +K+LK+ + + K K                N LL    R  +LV + V +
Sbjct: 73  FSFFLLSTLLAKTLKLHLYIIKNKNN-------------SNFLLMT--RRLMLVTAAVGT 117

Query: 126 FIGIVFVTLSMVNVIQVKVGKLSC-GSVYALTSVAS--LCGIVLLSLLLYAPSMVFA 179
             G VF+TLS+++V+Q+++GKL+C GS +    +AS  L  I  L+L+ + PS++++
Sbjct: 118 IAGCVFLTLSLIDVVQIRLGKLTCTGSAW----IASGFLVAIFALALIFWLPSLLYS 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470397|ref|XP_002273015.1| PREDICTED: uncharacterized protein LOC100246515 [Vitis vinifera] gi|359495402|ref|XP_003634982.1| PREDICTED: uncharacterized protein LOC100855266 [Vitis vinifera]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 113/171 (66%), Gaps = 10/171 (5%)

Query: 9   VHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFAC 68
           VH+ ALD LVNVNSLFTIAVFVGLS  + +Q SL++R  CD  + V +RL+++EV+SF+ 
Sbjct: 31  VHVTALDGLVNVNSLFTIAVFVGLSLTTPNQHSLENRAGCDAGIDVARRLLVFEVVSFSF 90

Query: 69  FLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIG 128
           FL SSL ++ LK+ INL   K          ++  F+  +     R F ++ S V S +G
Sbjct: 91  FLFSSLIAQGLKLAINLLNSK---------DVDDAFRAHINLKVLR-FGMLGSAVGSVLG 140

Query: 129 IVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFA 179
            +F+ LSMVNVI++++G LSCGS  A+ +VA+L  +V  +L++Y  + V+A
Sbjct: 141 CLFLMLSMVNVIEIRLGLLSCGSRSAVHAVAALLVLVSSALVVYISTAVYA 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142572|emb|CBI19775.3| unnamed protein product [Vitis vinifera]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 112/175 (64%), Gaps = 19/175 (10%)

Query: 4   DDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEV 63
            +++ V+ K LD+++NVN+LFT AVF+GL F+ R + +L  R+EC PD  + KRL+++E+
Sbjct: 51  TEMLAVYKKVLDNIINVNALFTSAVFIGLPFSFRTE-TLKTRVECKPDAGIAKRLVVFEI 109

Query: 64  ISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIV 123
           +SF+ FL+S+L +K+LK  ++   IK K     + K                 +L+++ V
Sbjct: 110 LSFSFFLLSTLLAKTLK--LHFYVIKNKHNTNFVLKTS-------------CLMLIIAAV 154

Query: 124 ASFIGIVFVTLSMVNVIQVKVGKLSC-GSVYALTSVASLCGIVLLSLLLYAPSMV 177
            +  G V +TLSM++++Q+++GKL+C GS + +T   SL  I  L+L+L+ P+++
Sbjct: 155 GTIAGCVLLTLSMIHMVQIRLGKLTCTGSSWIVT--GSLVAIFGLALILWLPTLL 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397969|ref|NP_566310.1| uncharacterized protein [Arabidopsis thaliana] gi|145331996|ref|NP_001078120.1| uncharacterized protein [Arabidopsis thaliana] gi|13877549|gb|AAK43852.1|AF370475_1 Unknown protein [Arabidopsis thaliana] gi|20148735|gb|AAM10258.1| unknown protein [Arabidopsis thaliana] gi|332641030|gb|AEE74551.1| uncharacterized protein [Arabidopsis thaliana] gi|332641031|gb|AEE74552.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 111/171 (64%), Gaps = 10/171 (5%)

Query: 9   VHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFAC 68
           VH+ ALD LVNVNSLFTIAVFVGLS A+  Q SL+ R  CD    V K+L+++EV+SF+ 
Sbjct: 26  VHVSALDGLVNVNSLFTIAVFVGLSLATPGQHSLEQRSSCDASADVAKKLLVFEVVSFSF 85

Query: 69  FLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVLSIVASFIG 128
           FL SSL ++ LK+ +NL      +  K + ++     NI +   W    ++ S V S +G
Sbjct: 86  FLFSSLVAQGLKLALNL------LNSKDVNEIFRAHINIKVL-RWG---MMASAVGSVMG 135

Query: 129 IVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFA 179
            +F+ LSMVNVIQ+++G LSCGS  A  +VA+L  +V  +LL+Y  + ++A
Sbjct: 136 CLFLMLSMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYA 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2079666	189	AT3G07510 "AT3G07510" [Arabido	0.352	0.349	0.621	5.2e-28
TAIR|locus:2153689	175	MEE60 "AT5G05950" [Arabidopsis	0.887	0.948	0.323	2.9e-16
TAIR|locus:2102742	204	AT3G46890 "AT3G46890" [Arabido	0.893	0.818	0.285	5e-12

TAIR|locus:2079666 AT3G07510 "AT3G07510" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 41/66 (62%), Positives = 50/66 (75%)

Query:     9 VHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFAC 68
             VH+ ALD LVNVNSLFTIAVFVGLS A+  Q SL+ R  CD    V K+L+++EV+SF+ 
Sbjct:    26 VHVSALDGLVNVNSLFTIAVFVGLSLATPGQHSLEQRSSCDASADVAKKLLVFEVVSFSF 85

Query:    69 FLMSSL 74
             FL SSL
Sbjct:    86 FLFSSL 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2153689 MEE60 "AT5G05950" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 56/173 (32%), Positives = 83/173 (47%)

Query:     9 VHLKALDDLVNVNSLFTIAVFVGLSFASRD-QRSLDDRLECDPDVSVGKRLILYEVISFA 67
             +H+ ALD +VNVNSLFT+AVF+GL++   D   SL     C P   + + L+ + V SFA
Sbjct:     5 IHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVYSFA 64

Query:    68 CFLMSSLCSXXXXXXXXXXXXXXXXXXXXXXXXEGPFKNILLSGTWRLFLLVLSIVASFI 127
              FL SSL +                          P    +     R F +V S + S  
Sbjct:    65 SFLFSSLIALGLKQAMRLNIASSFHISTRID----PVVYYVNKTALR-FGMVTSGLGSVC 119

Query:   128 GIVFVTLSMVNVIQVKVGKLSCG-SVYALTSVASLCGIVXXXXXXYAPSMVFA 179
             G  F+ L+++NV+Q+K+G L CG S +   +V  L  +V      Y   M++A
Sbjct:   120 GCGFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYA 172

GO:0003674 "molecular_function" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2102742 AT3G46890 "AT3G46890" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 54/189 (28%), Positives = 91/189 (48%)

Query:     9 VHLKALDDLVNVNSLFTIAVFVGLS------FASRDQRSLDDRLE-C--DPDVSVGKRLI 59
             +H+ A+D +VNVNSLF++A+F+GL+      F      S +  L  C      ++ +RL+
Sbjct:    21 IHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPALAERLV 80

Query:    60 LYEVISFACFLMSSLCSXXXXXXXXXXXXXXXXXXXXXXXXEGPFKNILLSGTWRLFL-- 117
                V SF+ FL SSL +                              +L +G  R+ L  
Sbjct:    81 SSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEA------RVLNAGEGRVNLAA 134

Query:   118 ----LVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCG-SVYALTSVASLCGIVXXXXXXY 172
                 +V S VAS +G  F+T+++V+++Q+K+G L C  S +AL ++  L  +V      Y
Sbjct:   135 LRVGIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALIIY 194

Query:   173 APSMVFAVI 181
                +++A I
Sbjct:   195 VFLVLYAFI 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.142   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       157   0.00079  106 3  11 22  0.38    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:03
  No. of threads or processors used:  24
  Search cpu time:  11.82u 0.08s 11.90t   Elapsed:  00:00:31
  Total cpu time:  11.82u 0.08s 11.90t   Elapsed:  00:00:34
  Start:  Thu May  9 20:01:22 2013   End:  Thu May  9 20:01:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00