Citrus Sinensis ID: 035534

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEEEEHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
MIGWEDVYKVIVAMVPLYFALMLGYgsvkwwkiiaPEECAAINRLVCyftlplftieftthvdpfnmnyrfigADAISKLIIVIVLAFWSmcskkgsyfsWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRrsgndskdleeghvtsssrppfwHLMKVVWLKlaknpnsyACVIGLAWAFVAnrwhfklpsiieGSILImskagtgtamFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT
Flexible Loop (DISEMBL)
MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGndskdleeghvtsssrppfwHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT
Low Complexity Region (SEG)
MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT
Disordered region (IsUnstruct)
*IGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR********************PFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQV**
Disordered Region (DISOPRED)
**GWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDS************RPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT
Disordered Region (DISEMBL)
MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGN**************RPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT
Disordered Region (DISPRO)
MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGN**************RPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9FFD0	351	Putative auxin efflux car	yes	no	0.986	0.817	0.683	1e-115
Q5JLM1	363	Probable auxin efflux car	yes	no	0.989	0.793	0.566	2e-93
Q6ZIB5	370	Probable auxin efflux car	no	no	0.989	0.778	0.481	2e-77
Q9LFP6	367	Putative auxin efflux car	no	no	0.979	0.776	0.346	1e-46
Q8RWZ6	616	Auxin efflux carrier comp	no	no	0.532	0.251	0.506	1e-43
Q9LU77	647	Auxin efflux carrier comp	no	no	0.532	0.239	0.5	8e-43
Q67UL3	592	Probable auxin efflux car	no	no	0.532	0.261	0.506	1e-42
Q5SMQ9	595	Auxin efflux carrier comp	no	no	0.532	0.260	0.5	6e-42
Q9S7Z8	640	Auxin efflux carrier comp	no	no	0.532	0.242	0.487	2e-41
Q940Y5	619	Auxin efflux carrier comp	no	no	0.532	0.250	0.487	3e-41

>sp|Q9FFD0|PIN8_ARATH Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=3 SV=2

 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/303 (68%), Positives = 239/303 (78%), Gaps = 16/303 (5%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   DVYKVI AMVPLY AL+LGYGSVKWW I   ++C AINRLVCYFTLPLFTIEFT 
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           HVDPFNMNYRFI AD +SK+IIV VLA W+  S KGSY  W IT+FSLCTLTN+LV+GVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSY-CWSITSFSLCTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSG---NDSKDLEEGHVTSSS--- 174
           L KAMYGQ AVDLVVQSSVFQ+IVWLT+ LFVLEFR++G   N+  D++  ++   S   
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKR 179

Query: 175 ------RPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSK 228
                    F  +M +VWLKLA NPN Y+C++G+AWAF++NRWH +LP I+EGSILIMSK
Sbjct: 180 ETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSK 239

Query: 229 AGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVS 285
           AGTGTAMF+MG    L EKL+ CG  LT +GMVLKFIAGPAAMAIGSI  GLHGDVLRV+
Sbjct: 240 AGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVA 299

Query: 286 IIQ 288
           IIQ
Sbjct: 300 IIQ 302

May act as a transmembrane component of the auxin efflux carrier.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLM1|PIN6_ORYSJ Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN6 PE=2 SV=1

 Score =  342 bits (876), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/314 (56%), Positives = 215/314 (68%), Gaps = 26/314 (8%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW DVYKV+ A VPLYFAL LGYGSV+WW+I   E+C A+NRLV +F LP FT EFT 
Sbjct: 1   MIGWGDVYKVVAATVPLYFALFLGYGSVRWWRIFTREQCDAVNRLVAFFALPFFTFEFTL 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWS-MCSKKGSYFSWCITNFSLCTLTNTLVLGV 119
           H DPF +NYR + AD ISK +IV V+  W+   SK G   SW IT+FSL TLTN+LV+GV
Sbjct: 61  HTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSWSITSFSLSTLTNSLVVGV 120

Query: 120 PLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSG------------NDSKDLE- 166
           P+ +AMYG+ A  LVVQ SVFQ+IVWLT+ LFVLE R++                KD+E 
Sbjct: 121 PMARAMYGEWAQQLVVQLSVFQAIVWLTLLLFVLEVRKAAIGMYVDGAEAAAAAGKDVEA 180

Query: 167 ---------EGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPS 217
                         ++ +P  W L+KVV  KLA+NPN+YA  +G+ WA +ANR H  LPS
Sbjct: 181 AGAAAAAGTVVVAAAAGKPSLWALVKVVAHKLARNPNTYASFVGITWACLANRLHIALPS 240

Query: 218 IIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIA 274
             EGS+LIMSK+GTG AMFSMG      EK++ACG    ALG+VLKF  GPAAMAIGSIA
Sbjct: 241 AFEGSVLIMSKSGTGMAMFSMGLFMAQQEKIIACGTSFAALGLVLKFALGPAAMAIGSIA 300

Query: 275 AGLHGDVLRVSIIQ 288
            GL GDVLRV+IIQ
Sbjct: 301 VGLRGDVLRVAIIQ 314

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZIB5|PIN4_ORYSJ Probable auxin efflux carrier component 4 OS=Oryza sativa subsp. japonica GN=PIN4 PE=2 SV=1

 Score =  289 bits (740), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/322 (48%), Positives = 199/322 (61%), Gaps = 34/322 (10%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW DVYKV+ AM PLYFAL LGYGSV+WW+    E+CAAIN +V YF++P FT +F  
Sbjct: 1   MIGWGDVYKVVGAMAPLYFALGLGYGSVRWWRFFTAEQCAAINTMVVYFSMPFFTFDFVV 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYF-----SWCITNFSLCTLTNTL 115
             DPF MNYR I ADA+SK I +  +A W+      +       SW IT FSL  L NTL
Sbjct: 61  RTDPFAMNYRVIAADAVSKAIAIAAMAAWARTRCGCAAAKAGAQSWSITGFSLAALNNTL 120

Query: 116 VLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRS--------------GND 161
           V+GVPL+ AMYG+ A DLVVQ +V QS+VW  + L   E R++               + 
Sbjct: 121 VVGVPLLDAMYGRWAQDLVVQIAVVQSMVWFPLLLMAFELRKAWVVGGGGGVGPAVMSSS 180

Query: 162 SKDLEEGHVTSS------------SRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVAN 209
           S   ++  V  +             R PFW   + V LKLA+NPN YA V+G+ WA +A 
Sbjct: 181 SPPEKQSDVEMNGAVVAAPGGGGGVRLPFWATARTVGLKLARNPNVYASVLGVVWACIAY 240

Query: 210 RWHFKLPSIIEGSILIMSKAGTGTAMFSMGEL---GEKLLACGPGLTALGMVLKFIAGPA 266
           RWH  LP I+ GS+ +MS+ GTG +MFSMG      E+++ACG GLTALGM L+F+AGP 
Sbjct: 241 RWHLSLPGIVTGSLQVMSRTGTGMSMFSMGLFMGQQERVIACGAGLTALGMALRFVAGPL 300

Query: 267 AMAIGSIAAGLHGDVLRVSIIQ 288
           A  +G+ A GL GDVL ++IIQ
Sbjct: 301 ATLVGAAALGLRGDVLHLAIIQ 322

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LFP6|PIN5_ARATH Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=3 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 173/323 (53%), Gaps = 38/323 (11%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A VPLY ++ LG+ S +  K+ +PE+CA IN+ V  F++PL + +  +
Sbjct: 1   MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLA----FWSMCSKKGSYFSWCITNFSLCTLTNTLV 116
             +PF M+ + I +D + K ++V+VLA    FW     +G    W IT  S+  L NTL+
Sbjct: 61  ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query: 117 LGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLE-------------FRRSGNDSK 163
           LG+P++ A+YG  A  ++ Q  V QS++W TI LF+ E                +GND  
Sbjct: 121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARALPSSGASLEHTGNDQ- 179

Query: 164 DLEEGHVTSSS------------RPPFWHLMKVV---WLKLAKNPNSYACVIGLAWAFVA 208
             EE ++                R      MK++   W KL  NPN+YA +IG+ WA + 
Sbjct: 180 --EEANIEDEPKEEEDEEEVAIVRTRSVGTMKILLKAWRKLIINPNTYATLIGIIWATLH 237

Query: 209 NRWHFKLPSIIEGSILIMSKAGTGTAMFSMGEL---GEKLLACGPGLTALGMVLKFIAGP 265
            R  + LP +I+ SI ++S  G G AMFS+G        ++ACG  +  + M+LKF+ GP
Sbjct: 238 FRLGWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIACGTKMAIITMLLKFVLGP 297

Query: 266 AAMAIGSIAAGLHGDVLRVSIIQ 288
           A M   +    L   + +V+I+Q
Sbjct: 298 ALMIASAYCIRLKSTLFKVAILQ 320

May act as a component of the auxin efflux carrier.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 111/156 (71%), Gaps = 1/156 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A+VPLY A++L YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct: 1   MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
             DP+ MN+RF+ AD + K+I++++LA W+  +K GS   W IT FSL TL NTLV+G+P
Sbjct: 61  TNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGS-LEWMITIFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
           L+ AMYG  A  L+VQ  V Q I+W T+ LF+ E+R
Sbjct: 120 LLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYR 155

Acts as a component of the auxin efflux carrier. Plays a role in generating a sink for auxin into columella cells. Maintains the endogenous auxin gradient, which is essential for correct root patterning.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU77|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI  +D+Y V+ AMVPLY A++L YGSV+WW I  P++C+ INR V  F +PL +  F +
Sbjct: 1   MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
             DP+ MNY F+ AD++ K++I+  L  W   S++GS   W IT FSL TL NTLV+G+P
Sbjct: 61  SNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGS-LEWMITLFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
           L++AMYG  + +L+VQ  V QSI+W T+ LF+ EFR
Sbjct: 120 LLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFR 155

Acts as a component of the auxin efflux carrier. Seems to be involved in the root-specific auxin transport, and mediates the root gravitropism. Its particular localization suggest a role in the translocation of auxin towards the elongation zone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 107/156 (68%), Gaps = 1/156 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   D Y V+ AMVPLY A++L YGSVKWW+I  P++C+ INR V  F +PL +  F +
Sbjct: 1   MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
             +P+ MN RFI AD + KLI++ +L  WS  S++GS   W IT FSL TL NTLV+G+P
Sbjct: 61  TNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGS-LEWTITLFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
           L+K MYG+ +  L+VQ  V Q I+W T+ LF+ E+R
Sbjct: 120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYR 155

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5SMQ9|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1

 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 107/156 (68%), Gaps = 1/156 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   D Y V+ AMVPLY A++L YGSVKWW+I  P++C+ INR V  F +PL +  F +
Sbjct: 1   MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
             +P+ MN RFI AD + KL+++ +L  WS  S++GS   W IT FSL TL NTLV+G+P
Sbjct: 61  TNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGS-LEWTITLFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
           L+K MYG+ +  L+VQ  V Q I+W T+ LF+ E+R
Sbjct: 120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYR 155

Acts as a component of the auxin efflux carrier. Seems to be involved in the polar auxin transport which may promote adventitious root emergence and control tillering.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A++PLY A++L YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct: 1   MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
             +P+ MN RFI AD + K+I++ +L  W+  ++ GS   W IT FSL TL NTLV+G+P
Sbjct: 61  TNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGS-LEWSITIFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
           L+ AMYG+ +  L+VQ  V Q I+W T+ LF+ EFR
Sbjct: 120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFR 155

Acts as a component of the auxin efflux carrier. Seems to be involved in the lateral auxin transport system and mediates tropic growth. Coordinated polar localization of PIN3 is directly regulated by the vesicle trafficking process.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940Y5|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A++PLY A++L YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct: 1   MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
             +P+ MN RFI AD + KLI++ +L  W+  ++ GS   W IT FSL TL NTLV+G+P
Sbjct: 61  SNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGS-LEWSITIFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
           L+ AMYG+ +  L+VQ  V Q I+W T+ LF+ E+R
Sbjct: 120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYR 155

Acts as a component of the auxin efflux carrier. Mediates the initial auxin gradient which contributes to the establishment of the apical-basal axis in early embryogenesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
225431003	356	PREDICTED: putative auxin efflux carrier	0.986	0.806	0.698	1e-121
224128940	346	auxin efflux carrier component [Populus	0.982	0.826	0.729	1e-120
255543120	357	conserved hypothetical protein [Ricinus	0.986	0.803	0.721	1e-120
224144932	346	auxin efflux carrier component [Populus	0.986	0.829	0.734	1e-119
449477700	371	PREDICTED: putative auxin efflux carrier	0.986	0.773	0.655	1e-113
449470249	371	PREDICTED: putative auxin efflux carrier	0.986	0.773	0.655	1e-113
357507711	363	Auxin Efflux Carrier [Medicago truncatul	0.986	0.790	0.644	1e-113
240256298	351	putative auxin efflux carrier component	0.986	0.817	0.683	1e-113
297807677	352	hypothetical protein ARALYDRAFT_326097 [	0.986	0.815	0.684	1e-108
356531914	377	PREDICTED: putative auxin efflux carrier	0.986	0.761	0.583	1e-99

>gi|225431003|ref|XP_002279191.1| PREDICTED: putative auxin efflux carrier component 8 [Vitis vinifera] gi|297735290|emb|CBI17652.3| unnamed protein product [Vitis vinifera]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 251/308 (81%), Gaps = 21/308 (6%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWEDVYKV+VAM+PLY AL+LGYGSVKWW+I  P++C AINRLVCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVVVAMLPLYVALVLGYGSVKWWRIFTPDQCDAINRLVCYFTLPLFTFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           HVDPF MNY FIGADA+SKLIIV+VLA W+ CS KGSY  W IT+FSL TLTN+LV+GVP
Sbjct: 61  HVDPFKMNYLFIGADAVSKLIIVLVLALWAKCSSKGSY-CWSITSFSLATLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGN---------DS--------K 163
           L+KAMYG + VDLVVQSSV Q+I+WLT+ LFVLEFRR+G          DS        K
Sbjct: 120 LIKAMYGPLGVDLVVQSSVVQAIIWLTLLLFVLEFRRTGTGISSNTTMGDSGVIEVEPGK 179

Query: 164 DLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSI 223
           DLE   +  S+R  FW LM+ VWLKLA+NPNSYAC+IG+ WAF+ANRWHF++PSI+EGSI
Sbjct: 180 DLETNEMVVSTRLSFWSLMRKVWLKLAQNPNSYACIIGIVWAFIANRWHFEMPSIMEGSI 239

Query: 224 LIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGD 280
           LIMS+AGTGTAMFSMG    + EK++ACG  LT  GMVL+FIAGPAAMAIG+IA GLHGD
Sbjct: 240 LIMSRAGTGTAMFSMGLFMAMQEKIIACGTTLTVFGMVLRFIAGPAAMAIGAIAVGLHGD 299

Query: 281 VLRVSIIQ 288
           VLR++IIQ
Sbjct: 300 VLRIAIIQ 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128940|ref|XP_002329004.1| auxin efflux carrier component [Populus trichocarpa] gi|222839238|gb|EEE77589.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/299 (72%), Positives = 253/299 (84%), Gaps = 13/299 (4%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWEDVYKV+VAMVPLY AL+LGYGSV+WWK+  PE+C AINR VCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVVVAMVPLYVALVLGYGSVRWWKVFTPEQCGAINRFVCYFTLPLFTFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           HVDPF MNYRFIGADA+SK+IIV+VLAFW+ CS KGSY SW IT+FSLCTLTN+LV+GVP
Sbjct: 61  HVDPFKMNYRFIGADAVSKVIIVVVLAFWAKCSSKGSY-SWSITSFSLCTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSG------NDSKDLEEGHV--TS 172
           ++KAMYG  AVDLVVQSSV Q+I+WLT+ L VLEFRR+G      N  KDL EG V  T 
Sbjct: 120 IIKAMYGPAAVDLVVQSSVIQAIIWLTLLLLVLEFRRTGLGFSSNNSDKDL-EGSVDNTE 178

Query: 173 SSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTG 232
           SSRP FW LM+ VW+KLA NPNSYAC+IGL WAF++NRWHF++P+++EGSILIMSKAGTG
Sbjct: 179 SSRPAFWCLMRTVWVKLAMNPNSYACIIGLVWAFISNRWHFEMPAMMEGSILIMSKAGTG 238

Query: 233 TAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQ 288
           TAMFSMG    L EK+++CG  L  +GM+L+FIAGPAAMAIGSIA GL GDVLRV+IIQ
Sbjct: 239 TAMFSMGIFMALQEKVISCGASLAVIGMILRFIAGPAAMAIGSIAVGLQGDVLRVAIIQ 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543120|ref|XP_002512623.1| conserved hypothetical protein [Ricinus communis] gi|223548584|gb|EEF50075.1| conserved hypothetical protein [Ricinus communis]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/309 (72%), Positives = 252/309 (81%), Gaps = 22/309 (7%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWEDVYKVIVAMVPLY AL+LGYGS++WWKI  PE+  A+NRLVCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVIVAMVPLYVALLLGYGSIRWWKIFTPEQGGAVNRLVCYFTLPLFTFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           HVDPF MNY FIGADAISK IIV+VLA W+  S KGSY +W IT+FSL TLTN+LV+GVP
Sbjct: 61  HVDPFKMNYLFIGADAISKFIIVVVLACWAKFSSKGSY-TWSITSFSLSTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRR-------------SGNDSKDLE- 166
           LMKAMYG MAVDLVVQSSV Q+I+WLTI LFVLEFRR             S N  KDLE 
Sbjct: 120 LMKAMYGPMAVDLVVQSSVVQAIIWLTILLFVLEFRRTRLDISSSNYNKNSDNLEKDLEG 179

Query: 167 ---EGHVT-SSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGS 222
               G++  SSS P FW LMKVV +KLA NPNSYAC++GL WAF+ANRWHF++PSI+EGS
Sbjct: 180 SGSAGNMAISSSGPSFWVLMKVVGVKLAMNPNSYACILGLVWAFIANRWHFEMPSIMEGS 239

Query: 223 ILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHG 279
           ILIMSKAGTGTAMFSMG    + EK++ACG GLT +GM+L+FIAGPAAMAIGSIA GLHG
Sbjct: 240 ILIMSKAGTGTAMFSMGIFMAVQEKVIACGAGLTVVGMILRFIAGPAAMAIGSIAVGLHG 299

Query: 280 DVLRVSIIQ 288
           DVLRV+IIQ
Sbjct: 300 DVLRVAIIQ 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144932|ref|XP_002325466.1| auxin efflux carrier component [Populus trichocarpa] gi|222862341|gb|EEE99847.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/298 (73%), Positives = 242/298 (81%), Gaps = 11/298 (3%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW D+YKV+VAMVPLY ALMLGYGSV+WWK+  PE+C AINR VCYFTLP FT EFT 
Sbjct: 1   MIGWADIYKVVVAMVPLYVALMLGYGSVRWWKVFTPEQCGAINRFVCYFTLPFFTFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           HVDPF MNY FIGADAISKLIIV+VLA W+  S KGSY  W IT+FSLCTLTN+LVLGVP
Sbjct: 61  HVDPFKMNYLFIGADAISKLIIVVVLAVWAKWSGKGSY-GWSITSFSLCTLTNSLVLGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSG------NDSKDLE-EGHVTSS 173
           L+KAMYG  AVDLVVQSSV QSI+WLT+ L VLEFRRSG      N  KDLE     T S
Sbjct: 120 LIKAMYGPTAVDLVVQSSVIQSIIWLTMLLLVLEFRRSGLGVSSSNPDKDLEGNADSTVS 179

Query: 174 SRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGT 233
           SRP FW LMK V +KLA NPNSYAC+IGL WAF+A RW F++PSI+EGSILIMSK GTGT
Sbjct: 180 SRPAFWCLMKTVGVKLAMNPNSYACIIGLVWAFIAKRWRFEMPSIMEGSILIMSKTGTGT 239

Query: 234 AMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQ 288
           AMFSMG    L EK++ACG  LT +GMVL+FIAGPAAMAIGSIA GL GDVLRV+IIQ
Sbjct: 240 AMFSMGIFMALQEKVIACGASLTVIGMVLRFIAGPAAMAIGSIAVGLRGDVLRVAIIQ 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477700|ref|XP_004155098.1| PREDICTED: putative auxin efflux carrier component 8-like [Cucumis sativus]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/322 (65%), Positives = 242/322 (75%), Gaps = 35/322 (10%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW+DVYKV+ AM PLYFAL+LGYGSVKWWKI + ++C AIN+LVCYFTLPLFT +FT+
Sbjct: 1   MIGWQDVYKVVAAMAPLYFALILGYGSVKWWKIFSTQQCDAINKLVCYFTLPLFTFDFTS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           H+DPF++N+ FI ADAI KLIIV+VL FW+ C+ KGSY  W IT+FSL TLTN LV+GVP
Sbjct: 61  HIDPFHLNFPFIAADAIGKLIIVLVLTFWAKCTTKGSY-CWSITSFSLSTLTNALVIGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGND------------------- 161
           L K MYGQMAVDLVVQ SV Q+IVWLTI LFVLE RR+G D                   
Sbjct: 120 LAKVMYGQMAVDLVVQGSVVQAIVWLTILLFVLELRRTGLDLVAAEASSGVVSEEKTVEV 179

Query: 162 ----SKDLEEGHV--------TSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVAN 209
                KDLE   +        + S RP    LMK VW+K+A NPNSYAC IG AWAFVA 
Sbjct: 180 GGEGEKDLEGEDMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVAK 239

Query: 210 RWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPA 266
           RWH ++PSI+EGSILIMSKAG GTAMF+MG    L EKL+ACGP LT +GMVLKFIAGPA
Sbjct: 240 RWHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVLKFIAGPA 299

Query: 267 AMAIGSIAAGLHGDVLRVSIIQ 288
           AMAIGSIA GLHGDVLRV+IIQ
Sbjct: 300 AMAIGSIAMGLHGDVLRVAIIQ 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470249|ref|XP_004152830.1| PREDICTED: putative auxin efflux carrier component 8-like [Cucumis sativus]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/322 (65%), Positives = 242/322 (75%), Gaps = 35/322 (10%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW+DVYKV+ AM PLYFAL+LGYGSVKWWKI + ++C AIN+LVCYFTLPLFT +FT+
Sbjct: 1   MIGWQDVYKVVAAMAPLYFALILGYGSVKWWKIFSTQQCDAINKLVCYFTLPLFTFDFTS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           H+DPF++N+ FI ADAI KLIIV+VLAFW+ C+ KGSY  W IT+FSL TLTN LV+GVP
Sbjct: 61  HIDPFHLNFPFIAADAIGKLIIVLVLAFWAKCTTKGSY-CWSITSFSLSTLTNALVIGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGND-------------SKDLEE 167
           L K MYGQMAVDLVVQ SV Q+IVWLTI LFVLE RR+G D              K +E 
Sbjct: 120 LAKVMYGQMAVDLVVQGSVVQAIVWLTILLFVLELRRTGLDLVAAEASSGVVSEEKTVEV 179

Query: 168 G------------------HVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVAN 209
           G                    + S RP    LMK VW+K+A NPNSYAC IG AWAFVA 
Sbjct: 180 GGEGEKDLEGEGMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVAK 239

Query: 210 RWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPA 266
           RWH ++PSI+EGSILIMSKAG GTAMF+MG    L EKL+ACGP LT +GMVLKFIAGPA
Sbjct: 240 RWHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVLKFIAGPA 299

Query: 267 AMAIGSIAAGLHGDVLRVSIIQ 288
           AMAIGSIA GLHGDVLRV+IIQ
Sbjct: 300 AMAIGSIAMGLHGDVLRVAIIQ 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507711|ref|XP_003624144.1| Auxin Efflux Carrier [Medicago truncatula] gi|49035698|gb|AAT48629.1| putative auxin efflux carrier protein 9 [Medicago truncatula] gi|87162565|gb|ABD28360.1| Auxin Efflux Carrier [Medicago truncatula] gi|355499159|gb|AES80362.1| Auxin Efflux Carrier [Medicago truncatula]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/315 (64%), Positives = 244/315 (77%), Gaps = 28/315 (8%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWEDVYKVIVA+VPLYFAL+LGYGSV+WWKI   E+C AIN+LVCYFTLPLF  EFT 
Sbjct: 1   MIGWEDVYKVIVAVVPLYFALILGYGSVRWWKIFTREQCDAINKLVCYFTLPLFAFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           H+DPF MN+ FIGAD +SKLIIV V+A W+ CS K SY SW IT+FSLCTLTN+LV+G+P
Sbjct: 61  HIDPFKMNFLFIGADTLSKLIIVAVIALWAKCSSKVSY-SWSITSFSLCTLTNSLVVGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRS---------------------- 158
           ++K MYG M VDLVVQ+SV Q+I+WLT+ LFVLEFRR+                      
Sbjct: 120 MVKPMYGPMGVDLVVQASVVQAIIWLTLLLFVLEFRRTGIEGTITTLKPKASSISNVTCE 179

Query: 159 GNDSKDLEEGHVT--SSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLP 216
           G +SKD+E  ++   +SSR PF  LMK VWLKL  NPNSY CVIG++WAF++NRW+ +LP
Sbjct: 180 GEESKDVEANNIVEYTSSRLPFLQLMKRVWLKLIANPNSYGCVIGISWAFISNRWNLELP 239

Query: 217 SIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSI 273
           S++EGSILIMSKAGTGTAMFSMG    L EK+++CGP LT  G+VLKFIAGPAAMAI + 
Sbjct: 240 SMVEGSILIMSKAGTGTAMFSMGIFMALQEKVISCGPSLTVFGLVLKFIAGPAAMAISAF 299

Query: 274 AAGLHGDVLRVSIIQ 288
             GL GDVLR++IIQ
Sbjct: 300 IVGLRGDVLRIAIIQ 314

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256298|ref|NP_197157.4| putative auxin efflux carrier component 8 [Arabidopsis thaliana] gi|42558880|sp|Q9FFD0.2|PIN8_ARATH RecName: Full=Putative auxin efflux carrier component 8; Short=AtPIN8 gi|332004922|gb|AED92305.1| putative auxin efflux carrier component 8 [Arabidopsis thaliana]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/303 (68%), Positives = 239/303 (78%), Gaps = 16/303 (5%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   DVYKVI AMVPLY AL+LGYGSVKWW I   ++C AINRLVCYFTLPLFTIEFT 
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           HVDPFNMNYRFI AD +SK+IIV VLA W+  S KGSY  W IT+FSLCTLTN+LV+GVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSY-CWSITSFSLCTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSG---NDSKDLEEGHVTSSS--- 174
           L KAMYGQ AVDLVVQSSVFQ+IVWLT+ LFVLEFR++G   N+  D++  ++   S   
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKR 179

Query: 175 ------RPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSK 228
                    F  +M +VWLKLA NPN Y+C++G+AWAF++NRWH +LP I+EGSILIMSK
Sbjct: 180 ETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSK 239

Query: 229 AGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVS 285
           AGTGTAMF+MG    L EKL+ CG  LT +GMVLKFIAGPAAMAIGSI  GLHGDVLRV+
Sbjct: 240 AGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVA 299

Query: 286 IIQ 288
           IIQ
Sbjct: 300 IIQ 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807677|ref|XP_002871722.1| hypothetical protein ARALYDRAFT_326097 [Arabidopsis lyrata subsp. lyrata] gi|297317559|gb|EFH47981.1| hypothetical protein ARALYDRAFT_326097 [Arabidopsis lyrata subsp. lyrata]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/304 (68%), Positives = 239/304 (78%), Gaps = 17/304 (5%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   DVYKVI AMVPLY AL+LGYGSVKWW I   ++C AINRLVCYFTLPLFTIEFT 
Sbjct: 1   MISCGDVYKVIEAMVPLYVALILGYGSVKWWNIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           HVDPFNMNYRFI AD +SK+IIV VLAFW+  S KGSY  W IT+FSLCTLTN+LV+GVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLAFWAKYSNKGSY-CWSITSFSLCTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGN----------DSKDLEEGH- 169
           L KAMYGQ AVDLVVQSSVFQ+IVWLT+ LFVLE R++G+          DS ++E G  
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLELRKAGSSSNYSSDVKVDSINIENGKR 179

Query: 170 --VTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMS 227
             V       F  +M +VWLKLA NPN Y+C++G+AWA ++NRWH ++P I+EGSILIMS
Sbjct: 180 EIVVVGEEKSFLEVMSLVWLKLATNPNCYSCILGIAWALISNRWHLEMPGILEGSILIMS 239

Query: 228 KAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRV 284
           KAGTGTAMF+MG    L EKL+ CG  LT +GMVLKFIAGPAAMAIGSIA GLHGDVLRV
Sbjct: 240 KAGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIALGLHGDVLRV 299

Query: 285 SIIQ 288
           +IIQ
Sbjct: 300 AIIQ 303

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531914|ref|XP_003534521.1| PREDICTED: putative auxin efflux carrier component 8-like [Glycine max]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/329 (58%), Positives = 237/329 (72%), Gaps = 42/329 (12%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWE+VYKV+VA+VPLYFAL+LGYGS+KWW I   E+C AIN+LVCYFTLPLF  EFT 
Sbjct: 1   MIGWEEVYKVVVAVVPLYFALLLGYGSLKWWNIFTREQCEAINKLVCYFTLPLFIFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
           H+DPF MNY FI AD ISK II++VLA W+ C+ KG+ FSW IT+FSLC LTN LV+GVP
Sbjct: 61  HIDPFKMNYSFIAADTISKFIIMVVLALWAKCTPKGT-FSWSITSFSLCNLTNALVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGND------------------- 161
           ++K MYG + VDLVVQ+SV Q+ +W  + LFVLEF R+G++                   
Sbjct: 120 MVKPMYGALGVDLVVQASVIQATIWFPLLLFVLEFWRTGSEGTTITTTTTLKPRPKTMII 179

Query: 162 ------SKDLEEGHVT-------------SSSRPPFWHLMKVVWLKLAKNPNSYACVIGL 202
                  KD+E   V              +SSR PF  +MK+VW KLA NPNS+ CVIG+
Sbjct: 180 DNESGGGKDVEATTVAIDVKEEMMLEESVTSSRLPFCKVMKLVWRKLATNPNSFGCVIGI 239

Query: 203 AWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMGE---LGEKLLACGPGLTALGMVL 259
           +WAF++NRW+ ++PS++EGSI IMSKAGTGTAMFSMG    L EK++ACGP +T +G+VL
Sbjct: 240 SWAFISNRWNLEMPSMLEGSIQIMSKAGTGTAMFSMGTFMALQEKVIACGPSMTIIGLVL 299

Query: 260 KFIAGPAAMAIGSIAAGLHGDVLRVSIIQ 288
           KFIAGPAA AIG+I  GL GDVLRV IIQ
Sbjct: 300 KFIAGPAATAIGAIVVGLRGDVLRVVIIQ 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2171392	351	PIN5 "AT5G16530" [Arabidopsis	0.986	0.817	0.683	6.5e-106
TAIR|locus:2038781	616	PIN4 "AT2G01420" [Arabidopsis	0.532	0.251	0.506	2.9e-72
TAIR|locus:2013975	640	PIN3 "AT1G70940" [Arabidopsis	0.532	0.242	0.487	1.1e-69
TAIR|locus:2175559	647	EIR1 "AT5G57090" [Arabidopsis	0.532	0.239	0.5	2.5e-68
TAIR|locus:2201225	619	PIN7 "AT1G23080" [Arabidopsis	0.532	0.250	0.487	3.8e-68
UNIPROTKB|Q5SMQ9	595	PIN1 "Auxin efflux carrier com	0.532	0.260	0.5	2.3e-66
TAIR|locus:2035037	622	PIN1 "AT1G73590" [Arabidopsis	0.532	0.249	0.5	3.7e-64
TAIR|locus:2025312	570	PIN6 "AT1G77110" [Arabidopsis	0.532	0.271	0.448	4e-58
TAIR|locus:2147835	367	PIN8 "AT5G15100" [Arabidopsis	0.529	0.419	0.398	1.8e-50
UNIPROTKB|P0AA49	314	yfdV "YfdV AEC Transporter" [E	0.549	0.509	0.234	0.00054

TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 207/303 (68%), Positives = 239/303 (78%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI   DVYKVI AMVPLY AL+LGYGSVKWW I   ++C AINRLVCYFTLPLFTIEFT 
Sbjct:     1 MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
             HVDPFNMNYRFI AD +SK+IIV VLA W+  S KGSY  W IT+FSLCTLTN+LV+GVP
Sbjct:    61 HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSY-CWSITSFSLCTLTNSLVVGVP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSG---NDSKDLEEGHVTSSS--- 174
             L KAMYGQ AVDLVVQSSVFQ+IVWLT+ LFVLEFR++G   N+  D++  ++   S   
Sbjct:   120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKR 179

Query:   175 ------RPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSK 228
                      F  +M +VWLKLA NPN Y+C++G+AWAF++NRWH +LP I+EGSILIMSK
Sbjct:   180 ETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSK 239

Query:   229 AGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVS 285
             AGTGTAMF+MG    L EKL+ CG  LT +GMVLKFIAGPAAMAIGSI  GLHGDVLRV+
Sbjct:   240 AGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVA 299

Query:   286 IIQ 288
             IIQ
Sbjct:   300 IIQ 302

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0080161 "auxin transmembrane transporter activity" evidence=IDA

GO:0080162 "intracellular auxin transport" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
 Identities = 79/156 (50%), Positives = 111/156 (71%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A+VPLY A++L YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct:     1 MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
               DP+ MN+RF+ AD + K+I++++LA W+  +K GS   W IT FSL TL NTLV+G+P
Sbjct:    61 TNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGS-LEWMITIFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
             L+ AMYG  A  L+VQ  V Q I+W T+ LF+ E+R
Sbjct:   120 LLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYR 155

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048364 "root development" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 1.1e-69, Sum P(2) = 1.1e-69
 Identities = 76/156 (48%), Positives = 109/156 (69%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A++PLY A++L YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct:     1 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
               +P+ MN RFI AD + K+I++ +L  W+  ++ GS   W IT FSL TL NTLV+G+P
Sbjct:    61 TNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGS-LEWSITIFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
             L+ AMYG+ +  L+VQ  V Q I+W T+ LF+ EFR
Sbjct:   120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFR 155

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009606 "tropism" evidence=IMP

GO:0012506 "vesicle membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0010082 "regulation of root meristem growth" evidence=IGI

GO:0048364 "root development" evidence=IGI;IMP

GO:0009630 "gravitropism" evidence=TAS

GO:0009986 "cell surface" evidence=IDA

GO:0048766 "root hair initiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0009416 "response to light stimulus" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 2.5e-68, Sum P(2) = 2.5e-68
 Identities = 78/156 (50%), Positives = 109/156 (69%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI  +D+Y V+ AMVPLY A++L YGSV+WW I  P++C+ INR V  F +PL +  F +
Sbjct:     1 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
               DP+ MNY F+ AD++ K++I+  L  W   S++GS   W IT FSL TL NTLV+G+P
Sbjct:    61 SNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGS-LEWMITLFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
             L++AMYG  + +L+VQ  V QSI+W T+ LF+ EFR
Sbjct:   120 LLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFR 155

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000323 "lytic vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=IMP;RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.8e-68, Sum P(2) = 3.8e-68
 Identities = 76/156 (48%), Positives = 109/156 (69%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A++PLY A++L YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct:     1 MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
               +P+ MN RFI AD + KLI++ +L  W+  ++ GS   W IT FSL TL NTLV+G+P
Sbjct:    61 SNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGS-LEWSITIFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
             L+ AMYG+ +  L+VQ  V Q I+W T+ LF+ E+R
Sbjct:   120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYR 155

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0048364 "root development" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 427 (155.4 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 78/156 (50%), Positives = 107/156 (68%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI   D Y V+ AMVPLY A++L YGSVKWW+I  P++C+ INR V  F +PL +  F +
Sbjct:     1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
               +P+ MN RFI AD + KL+++ +L  WS  S++GS   W IT FSL TL NTLV+G+P
Sbjct:    61 TNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGS-LEWTITLFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
             L+K MYG+ +  L+VQ  V Q I+W T+ LF+ E+R
Sbjct:   120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYR 155

GO:0005215 "transporter activity" evidence=IMP

GO:0006810 "transport" evidence=IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009921 "auxin efflux carrier complex" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0048830 "adventitious root development" evidence=IMP

TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
 Identities = 78/156 (50%), Positives = 105/156 (67%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI   D Y V+ AMVPLY A++L YGSVKWWKI  P++C+ INR V  F +PL +  F  
Sbjct:     1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
               +P+ MN RF+ AD++ K+I++ +L  W   S+ GS   W IT FSL TL NTLV+G+P
Sbjct:    61 ANNPYAMNLRFLAADSLQKVIVLSLLFLWCKLSRNGS-LDWTITLFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
             L+K MYG  + DL+VQ  V Q I+W T+ LF+ E+R
Sbjct:   120 LLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYR 155

GO:0005215 "transporter activity" evidence=ISS;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048367 "shoot system development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0048825 "cotyledon development" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0010338 "leaf formation" evidence=IGI

GO:0010358 "leaf shaping" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009624 "response to nematode" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048364 "root development" evidence=IMP;RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 4.0e-58, Sum P(2) = 4.0e-58
 Identities = 70/156 (44%), Positives = 100/156 (64%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI   + Y V+ AM PLYFA+ + YGSVKW KI  P +C+ INR V  F +P+ +  F +
Sbjct:     1 MITGNEFYTVMCAMAPLYFAMFVAYGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
               +P+ M+  FI AD +SK+ + ++L+ W++  K G    W IT FS+ TL NTLV+G+P
Sbjct:    61 QNNPYKMDTMFILADTLSKIFVFVLLSLWAVFFKAGG-LDWLITLFSIATLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFR 156
             L++AMYG     L+VQ  V Q I+W T+ LF+ E R
Sbjct:   120 LLQAMYGDYTQTLMVQLVVLQCIIWYTLLLFLFELR 155

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 63/158 (39%), Positives = 98/158 (62%)

Query:     1 MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A VPLY ++ LG+ S +  K+ +PE+CA IN+ V  F++PL + +  +
Sbjct:     1 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLA----FWSMCSKKGSYFSWCITNFSLCTLTNTLV 116
               +PF M+ + I +D + K ++V+VLA    FW     +G    W IT  S+  L NTL+
Sbjct:    61 ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query:   117 LGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLE 154
             LG+P++ A+YG  A  ++ Q  V QS++W TI LF+ E
Sbjct:   121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFE 158

GO:0005215 "transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

UNIPROTKB|P0AA49 yfdV "YfdV AEC Transporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 88 (36.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
 Identities = 41/175 (23%), Positives = 78/175 (44%)

Query:    14 MVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIG 73
             ++P+   ++LGY S +  +  + ++  A N+LV  + LP       T  +   M +    
Sbjct:     9 LLPIIVIMLLGYFSGRR-ETFSEDQARAFNKLVLNYALPAALFVSITRANR-EMIFADTR 66

Query:    74 ADAISKLIIVIVLAF-WSMCSKKGSYFSWCITNFSLCTL---TNTL-VLGVPLMKAMYGQ 128
                +S ++IV    F W  C K   +F       ++C L   + T+  LG  ++  +YG 
Sbjct:    67 LTLVSLVVIVGCFFFSWFGCYK---FFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGD 123

Query:   129 -MAVDLVVQS-SVFQSIVWLTIFLFVLEFRRSGNDSKDLEE--GHVTSSSRPPFW 179
              ++  LVV   S+  + + + I L++L    SG D K        ++++  P  W
Sbjct:   124 SVSTGLVVAIISIIVNAITIPIGLYLLN-PSSGADGKKNSNLSALISAAKEPVVW 177

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JLM1	PIN6_ORYSJ	No assigned EC number	0.5668	0.9896	0.7933	yes	no
Q9FFD0	PIN8_ARATH	No assigned EC number	0.6831	0.9862	0.8176	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	3e-48
TIGR00946	321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	2e-35
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	4e-07

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  162 bits (413), Expect = 3e-48
 Identities = 85/286 (29%), Positives = 132/286 (46%), Gaps = 11/286 (3%)

Query: 10  VIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNY 69
           V+ A++P++  ++LGY + K   I+ P++ + IN+LV YF LPL      +      M  
Sbjct: 2   VVEAVLPVFLIMLLGYLAGKS-GILPPDQASGINKLVVYFALPLLIFSSISTNVTLEMIV 60

Query: 70  RFIGADAISKLIIVIVLAFWSMCSK--KGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYG 127
            F     +  LI+ I L    + SK  K     W           NT  LG+PL+ A+YG
Sbjct: 61  DFWLIPVLVVLIVAISLIIGFLVSKIFKLPL-EWRGVLILTSAFPNTGFLGLPLLLALYG 119

Query: 128 QMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDLEEGHVTSSSRPPFWHLMKVVWL 187
           +  +   + S V   I+  T+  F++E R +  D    EE   TS S      ++ VV L
Sbjct: 120 EEGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDK--SEESGDTSGSM--TLLILIVVLL 175

Query: 188 KLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEK 244
           KL  NP +YA ++GL    V        P  I+ SI I+  A    A+FS+G    LG+ 
Sbjct: 176 KLILNPPTYASLLGLILGLVGFLLPLIFPEFIQDSISILGDAAIPMALFSLGLTLALGKL 235

Query: 245 LLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVT 290
             + G     + ++L+ I  P  M    +  GL G  L V+I++  
Sbjct: 236 KSSLGAATATIHLILRLILMPLVMLGIVLLLGLRGLTLLVAILEAA 281

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family

 Score =  129 bits (326), Expect = 2e-35
 Identities = 75/309 (24%), Positives = 121/309 (39%), Gaps = 53/309 (17%)

Query: 1   MIGWEDVYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI +  +  V+  +V +    +LG    K + I+  E  + INR V  F LPL       
Sbjct: 1   MITYVILETVLPILVVILLGYILG----KRFGILDEEHASGINRFVINFALPLTIFHSI- 55

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVP 120
                        AD + K    +VL  W   S   +                  ++  P
Sbjct: 56  ---------STTLADILQKSQSPVVLFLWGAFSGSYAL---------------IWLITKP 91

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDL--------------- 165
           L KA YG+++  L+V +    + +   + L +     +      L               
Sbjct: 92  LFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGL 151

Query: 166 ----EEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEG 221
               E+G     S      ++  VW KL K P  +A ++ +  + V     FK+P +I  
Sbjct: 152 FLVSEDGAGGEGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVG----FKMPGLILK 207

Query: 222 SILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGD 280
           SI I+S A T  A+FS+G  L  + +  G     L ++++F+  PA MA  S   GL G 
Sbjct: 208 SISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGL 267

Query: 281 VLRVSIIQV 289
            L V+I+Q 
Sbjct: 268 ELSVAILQA 276

[Transport and binding proteins, Other]. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 53/287 (18%), Positives = 107/287 (37%), Gaps = 37/287 (12%)

Query: 10  VIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLP--LFTIEFTTHVDPFNM 67
           V   ++P++  ++LGY   ++  I+  E    ++RLV Y  LP  LF    T  +     
Sbjct: 5   VFEVVLPIFLIILLGYLLKRFG-ILDEEAARGLSRLVVYVALPALLFNSIATADLS-GLA 62

Query: 68  NYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLT----NTLVLGVPLMK 123
           +   I A  ++   ++       +       F        +  L     N   LG+P+  
Sbjct: 63  DLGLIVASLVA--TLLAFFLLALIGRF---LFKLDKRETVIFALASAFPNIGFLGLPVAL 117

Query: 124 AMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDLEEGHVTSSSRPPFWHLMK 183
           +++G+  +   V   +    +  T+ + +L     G +                    + 
Sbjct: 118 SLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTN------------------KSLL 159

Query: 184 VVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELG 242
            V  KL  NP   A ++GL            LP+ ++ ++ +++ A +  A+ ++G  L 
Sbjct: 160 SVLKKLLTNPLIIALILGLLLNL----LGISLPAPLDTAVDLLASAASPLALIALGLSLA 215

Query: 243 EKLLACGPGLTAL-GMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQ 288
              L        L  + LK +  P    + +   GL G  L+V ++ 
Sbjct: 216 FLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLL 262

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	100.0
PRK09903	314	putative transporter YfdV; Provisional	100.0
COG0679	311	Predicted permeases [General function prediction o	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	100.0
KOG2722	408	consensus Predicted membrane protein [Function unk	99.88
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	97.79
COG3329	372	Predicted permease [General function prediction on	97.6
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	96.96
TIGR00841	286	bass bile acid transporter. Functionally character	96.91
TIGR00841	286	bass bile acid transporter. Functionally character	96.36
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	95.77
COG0385	319	Predicted Na+-dependent transporter [General funct	95.66
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	95.65
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	94.57
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	94.07
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	92.89
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	91.95
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	90.57
COG0385	319	Predicted Na+-dependent transporter [General funct	89.21
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	88.88
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	86.68
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	86.37
COG5505	384	Predicted integral membrane protein [Function unkn	85.52
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	84.91
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	83.65
PRK10711	231	hypothetical protein; Provisional	82.06
PRK04288	232	antiholin-like protein LrgB; Provisional	81.69

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=100.00  E-value=1.5e-39  Score=296.10  Aligned_cols=269  Identities=25%  Similarity=0.327  Sum_probs=218.0

Q ss_pred             CcChHHHHHHHHHHHHHHHHHHHhHhh-hhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCC--Cc-chhhHHHHH
Q 035534            1 MIGWEDVYKVIVAMVPLYFALMLGYGS-VKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPF--NM-NYRFIGADA   76 (291)
Q Consensus         1 ~~~~~~~~~i~~~vlpi~lii~~G~~~-~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~--~~-~~~~i~~~~   76 (291)
                      ||.|+    +++.++|+++++++||++ +| +|++|+|+.+.++++++|+++||++|+++.+.+.+  +. .+.......
T Consensus         1 ~~~~~----~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~   75 (321)
T TIGR00946         1 MITYV----ILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLW   75 (321)
T ss_pred             CccHH----HHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554    556677999999999999 56 79999999999999999999999999999987654  22 334433344


Q ss_pred             HHHHHHHHHHHHHHH-HhcCCcccchhhhhccccccccccchhHHHHHHhhccch---hhHHHHHHHHHHHHHHHHHHHH
Q 035534           77 ISKLIIVIVLAFWSM-CSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMA---VDLVVQSSVFQSIVWLTIFLFV  152 (291)
Q Consensus        77 ~~~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~---~~~~~~~~~~~~~~~~~~~~~~  152 (291)
                      .+....+++++..+| ..|+++ +++....+. +.++|++++|+|+++++|||++   ..++..+++.+++..|++++..
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (321)
T TIGR00946        76 GAFSGSYALIWLITKPLFKADY-GKLSGFLLV-SALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFL  153 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-chhhHHHHH-hhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHH
Confidence            445566777788888 555554 344444445 8999999999999999999999   7788888899999999999877


Q ss_pred             HhhcccCCCCcccccCCCCCCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhH
Q 035534          153 LEFRRSGNDSKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTG  232 (291)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~p  232 (291)
                      .+..+.++++           ++.+.++..++.++++++||+++|.++|++++.+    |+++|+++.++++++|++++|
T Consensus       154 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~p  218 (321)
T TIGR00946       154 VSEDGAGGEG-----------SGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTP  218 (321)
T ss_pred             hccccccccc-----------cchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHH
Confidence            6532210000           0112223345678999999999999999999999    999999999999999999999


Q ss_pred             HHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534          233 TAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT  291 (291)
Q Consensus       233 laL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa~  291 (291)
                      ++|+++| +++.+..+++++..+..+..|+++.|++++.++..+++|+..++++++++|+
T Consensus       219 laLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~  278 (321)
T TIGR00946       219 MALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAAL  278 (321)
T ss_pred             HHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcC
Confidence            9999999 8877666667788999999999999999999999999999999999999985

>PRK09903 putative transporter YfdV; Provisional

Probab=100.00  E-value=3.5e-38  Score=286.12  Aligned_cols=259  Identities=19%  Similarity=0.272  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHHH
Q 035534            8 YKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM--NYRFIGADAISKLIIVIV   85 (291)
Q Consensus         8 ~~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~--~~~~i~~~~~~~~i~~~~   85 (291)
                      .+.++.++|+++++++||+++| +|.++||+.+.++++++|+++||++|.++.+.+.++.  ++.......++.+..+++
T Consensus         3 ~~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (314)
T PRK09903          3 TFFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFF   81 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            3567889999999999999966 7999999999999999999999999999998865432  455545555555666777


Q ss_pred             HHHHHH-HhcCCcccchhhhhccccccccccchhHHHHHHhhccc---hhhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 035534           86 LAFWSM-CSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM---AVDLVVQSSVFQSIVWLTIFLFVLEFRRSGND  161 (291)
Q Consensus        86 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                      ++...| ..++++ .++....+. ++++|++|+|+|+++++||++   ++.++..+ ..++++.|+++.+..+..+.+++
T Consensus        82 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~~~~  158 (314)
T PRK09903         82 SWFGCYKFFKRTH-AEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAIIS-IIVNAITIPIGLYLLNPSSGADG  158 (314)
T ss_pred             HHHHHHHHhcCCc-chhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHHH-HHHHHHHHHHHHHHHcccccccc
Confidence            777665 344443 333344455 678999999999999999998   55555554 45788899999998874322100


Q ss_pred             CcccccCCCCCCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-C
Q 035534          162 SKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-E  240 (291)
Q Consensus       162 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~  240 (291)
                                   +.+   ..++.+++++|||+++|+++|++++.+    |+++|+++.++++++|++++|++|+++| +
T Consensus       159 -------------~~~---~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~  218 (314)
T PRK09903        159 -------------KKN---SNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLT  218 (314)
T ss_pred             -------------ccc---hHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         111   134667889999999999999999999    9999999999999999999999999999 7


Q ss_pred             cCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534          241 LGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT  291 (291)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa~  291 (291)
                      +.....+. .++.+.....|+++.|++++.++..+++|+.+.+++++++|+
T Consensus       219 L~~~~~~~-~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~  268 (314)
T PRK09903        219 LAAHKFEF-SAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGAL  268 (314)
T ss_pred             Hhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcc
Confidence            65444333 356778889999999999999999999999999999999986

>COG0679 Predicted permeases [General function prediction only]

Probab=100.00  E-value=2.4e-37  Score=279.83  Aligned_cols=261  Identities=21%  Similarity=0.345  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc-chhhHHHHHHHHHHHHHH
Q 035534            7 VYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-NYRFIGADAISKLIIVIV   85 (291)
Q Consensus         7 ~~~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~-~~~~i~~~~~~~~i~~~~   85 (291)
                      ++.+++.++|+++++++||+++| .+.+|++..+.++++++|+++||++|+++.+.+.++. ++..+...+.+.+..++.
T Consensus         2 ~~~~~~~vlpi~lii~lGy~~~r-~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (311)
T COG0679           2 MMIVFEVVLPIFLIILLGYLLKR-FGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL   80 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999966 8999999999999999999999999999999997765 677777777777777788


Q ss_pred             HHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccc
Q 035534           86 LAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDL  165 (291)
Q Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      .+.+.|+.++++++++.....+ +.++|++++|+|+....||++++.++++++..+++..++++.+.++..+++      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------  153 (311)
T COG0679          81 LALIGRFLFKLDKRETVIFALA-SAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------  153 (311)
T ss_pred             HHHHHHHHhccchhhHHHHHHH-HHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence            7777776544432334344445 899999999999999999999999999999999999999999999865432      


Q ss_pred             ccCCCCCCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCcc
Q 035534          166 EEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEK  244 (291)
Q Consensus       166 ~~~~~e~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~  244 (291)
                               +.   +..++..+++++||+++|.++|++++..    ++++|+.+.++.++++++++|++|+++| +++.+
T Consensus       154 ---------~~---~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~  217 (311)
T COG0679         154 ---------TN---KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL  217 (311)
T ss_pred             ---------ch---hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence                     11   2257788999999999999999999999    9999999999999999999999999999 88774


Q ss_pred             ccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534          245 LLA-CGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT  291 (291)
Q Consensus       245 ~~~-~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa~  291 (291)
                      ..+ ...+........|+++.|++++.+..++|++++..++.++++|+
T Consensus       218 ~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~  265 (311)
T COG0679         218 KLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAM  265 (311)
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhC
Confidence            334 33445556666699999999999999999999999999999875

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=100.00  E-value=3.1e-35  Score=274.00  Aligned_cols=280  Identities=24%  Similarity=0.345  Sum_probs=212.8

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCC-CCCc-chhhHHH-HHHHHHHHHHH
Q 035534            9 KVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVD-PFNM-NYRFIGA-DAISKLIIVIV   85 (291)
Q Consensus         9 ~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~-~~~~-~~~~i~~-~~~~~~i~~~~   85 (291)
                      +++++++|+++++++||+++| +|++++++.+.++++++|+++||++|.++++.+ .++. +++.+.. ..+...+.+++
T Consensus         1 ~v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (385)
T PF03547_consen    1 TVFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL   79 (385)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            467899999999999999976 699999999999999999999999999999875 3333 5554433 33445556666


Q ss_pred             HHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCC---
Q 035534           86 LAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDS---  162 (291)
Q Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  162 (291)
                      ++++.|+.+.++ .++...... ++++|++++|+|+++++||+++..|+.+++.+++++.|+++..+++..++++++   
T Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~-~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~  157 (385)
T PF03547_consen   80 GFLLSRLFRLPK-EWRGVFVLA-ASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEE  157 (385)
T ss_pred             HHHHHHhcCCCc-ccceEEEec-ccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccc
Confidence            677778666554 222322233 789999999999999999999999999999999999999999998764432110   


Q ss_pred             -cc--------ccc-------C-C--------CCCC-----------------C---C------------CchhhHHHHH
Q 035534          163 -KD--------LEE-------G-H--------VTSS-----------------S---R------------PPFWHLMKVV  185 (291)
Q Consensus       163 -~~--------~~~-------~-~--------~e~~-----------------~---~------------~~~~~~~~~~  185 (291)
                       ++        .+|       + +        +|++                 +   +            ...++..++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (385)
T PF03547_consen  158 EPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKS  237 (385)
T ss_pred             cccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHH
Confidence             00        000       0 0        0000                 0   0            0112234556


Q ss_pred             HHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccc--cccchhHHHHHHHHHHH
Q 035534          186 WLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKL--LACGPGLTALGMVLKFI  262 (291)
Q Consensus       186 ~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~--~~~~~~~~~~~~~~rli  262 (291)
                      +++.++||+++|.++|+++++.++..+..+|+++.++++++|++++|++|+++| .+....  ....++.....++.|++
T Consensus       238 ~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rli  317 (385)
T PF03547_consen  238 ILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLI  317 (385)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHH
Confidence            788899999999999999999944444445599999999999999999999999 654322  23456666678999999


Q ss_pred             HHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534          263 AGPAAMAIGSIAAGLHGDVLRVSIIQVTT  291 (291)
Q Consensus       263 l~Pli~~~~~~~~~l~~~~~~v~vl~aa~  291 (291)
                      +.|++++++++.+++++...++.++++++
T Consensus       318 i~P~i~~~~~~~~~l~~~~~~~~~~~~~~  346 (385)
T PF03547_consen  318 ILPLIGIGIVFLLGLDGDMARVLILQAAM  346 (385)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhccC
Confidence            99999999999999999999999888764

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=99.88  E-value=3.7e-23  Score=183.39  Aligned_cols=260  Identities=14%  Similarity=0.149  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHHHhHhhhhh-ccccChhhhhHHHHHHHHHHhHHHHHHHhccC-CCCCc-chhhHHHH-HHHHHHHHHHHH
Q 035534           12 VAMVPLYFALMLGYGSVKW-WKIIAPEECAAINRLVCYFTLPLFTIEFTTHV-DPFNM-NYRFIGAD-AISKLIIVIVLA   87 (291)
Q Consensus        12 ~~vlpi~lii~~G~~~~k~-~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~-~~~~~-~~~~i~~~-~~~~~i~~~~~~   87 (291)
                      ..++.++++..+|+++++. -++++++++|.+|+++++++.||++|..+++. +++++ +||+++.. .+...+..+++|
T Consensus        15 ~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~   94 (408)
T KOG2722|consen   15 MPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGW   94 (408)
T ss_pred             ccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4677888999999988762 38999999999999999999999999999988 66666 99999776 456678888999


Q ss_pred             HHHHHhcCCcccchhhhhccccccccccchhHHHHHHh-------hcc------chhhHHHHHHHHHHHHHHHHHHHHHh
Q 035534           88 FWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAM-------YGQ------MAVDLVVQSSVFQSIVWLTIFLFVLE  154 (291)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l-------~G~------~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (291)
                      ++.|+.|.+++.+..+  .+||.++|.+.+.+-++.++       ||+      .|+.|+........+..||+++-++.
T Consensus        95 lv~~I~rppp~~~~fi--ia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~~  172 (408)
T KOG2722|consen   95 LVVKILRPPPQLRGFI--IACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRMLL  172 (408)
T ss_pred             HHhheecCChhhcCeE--EEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeeec
Confidence            9999888766333332  34589999999999999988       453      58999999988888888998885332


Q ss_pred             hcccC------CC----C------cccccCCCC-----------------C-CC-CCchh---hHHHHHHHHHhhchhHH
Q 035534          155 FRRSG------ND----S------KDLEEGHVT-----------------S-SS-RPPFW---HLMKVVWLKLAKNPNSY  196 (291)
Q Consensus       155 ~~~~~------~~----~------~~~~~~~~e-----------------~-~~-~~~~~---~~~~~~~~~~~~nP~~i  196 (291)
                      ..+..      ++    .      +..|+|++|                 + .+ +..++   -..+..++. +.+|+++
T Consensus       173 ~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~~L~~-i~~Ppti  251 (408)
T KOG2722|consen  173 PPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKVILKE-IFAPPTI  251 (408)
T ss_pred             CCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHhhHHH-hcCchHH
Confidence            11000      00    0      000111100                 0 00 11111   012334445 4699999


Q ss_pred             HHHHHHHHHHhhhhcC----CC-cchhHHHHHHHHHhhhhHHHHHHhc-Cc--CccccccchhHHHHHHHHHHHHHHHHH
Q 035534          197 ACVIGLAWAFVANRWH----FK-LPSIIEGSILIMSKAGTGTAMFSMG-EL--GEKLLACGPGLTALGMVLKFIAGPAAM  268 (291)
Q Consensus       197 a~ilGl~l~~~~~~~~----~~-lP~~i~~~l~~l~~~~~plaL~~iG-~l--~~~~~~~~~~~~~~~~~~rlil~Pli~  268 (291)
                      |.++|+++...++.++    -. .-.+++++++++|+.++|+.++++| .+  ..++...+.+.+...++.|+++.|.+.
T Consensus       252 a~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~g  331 (408)
T KOG2722|consen  252 AAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVG  331 (408)
T ss_pred             HHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhh
Confidence            9999999999876221    12 2258999999999999999999999 54  233333445567778899999999999


Q ss_pred             HHHHHH
Q 035534          269 AIGSIA  274 (291)
Q Consensus       269 ~~~~~~  274 (291)
                      +++...
T Consensus       332 l~iv~~  337 (408)
T KOG2722|consen  332 LGIVRL  337 (408)
T ss_pred             HHHHHH
Confidence            887543

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=97.79  E-value=0.0033  Score=56.55  Aligned_cols=248  Identities=12%  Similarity=0.011  Sum_probs=124.9

Q ss_pred             HHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHH---hccCCCCCcchhhHHHHHHHHHHHHHHHHH-HHH
Q 035534           16 PLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEF---TTHVDPFNMNYRFIGADAISKLIIVIVLAF-WSM   91 (291)
Q Consensus        16 pi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~---i~~~~~~~~~~~~i~~~~~~~~i~~~~~~~-~~~   91 (291)
                      |..+...+|.+++. .| -|-+.-+.+.+.+--+.+=+.=++.   +.+.+..++-+.......++.++- +.++. +.|
T Consensus         1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liP-l~~~~iLr~   77 (327)
T PF05982_consen    1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIP-LIAFPILRR   77 (327)
T ss_pred             CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            44566677776643 33 2333334455555444444444443   222222211112222222333332 33333 344


Q ss_pred             HhcCCcccchhhhhccccccccccchhHHHHHHhhccchh---hHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc-cccc
Q 035534           92 CSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAV---DLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSK-DLEE  167 (291)
Q Consensus        92 ~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  167 (291)
                      +.|-++ .|..  +.+ +.|+...-..+-...+..-++++   .|...+....+...-.++..+.+..+.++.++ +.++
T Consensus        78 ~~~l~~-~daa--AiA-AhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~  153 (327)
T PF05982_consen   78 LGKLDR-ADAA--AIA-AHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASS  153 (327)
T ss_pred             ccCCCh-hhHH--HHH-HHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCc
Confidence            445544 3322  233 56666666666666666544443   44555555556566667777765433221111 1111


Q ss_pred             CCCC---CCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCC-cchhHHHHHHHHHhhhhHHHHHHhc-C--
Q 035534          168 GHVT---SSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFK-LPSIIEGSILIMSKAGTGTAMFSMG-E--  240 (291)
Q Consensus       168 ~~~e---~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~-lP~~i~~~l~~l~~~~~plaL~~iG-~--  240 (291)
                      ++.|   ++++.+    +++.++..++|+.++..+.|+++.+.    .-+ =-+.++.....+=+....+-|+-+| .  
T Consensus       154 ~~~~~~~~~~~~~----~~~~l~E~l~~~sv~LLlGgliIG~~----~g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~  225 (327)
T PF05982_consen  154 TRVGAGSGHEGIS----WGELLHESLTNKSVVLLLGGLIIGFL----AGPEGVESIKPFFVDLFKGVLCLFLLEMGLVAA  225 (327)
T ss_pred             ccccccccccccc----HHHHHHHHHcCchHHHHHHHHHHhhe----eCccchhhccchhhccHHHHHHHHHHHhhHHHH
Confidence            1111   112223    67889999999999999999999876    221 1123444555555666777888888 2  


Q ss_pred             cCccccccchhHHHHHHHHHHHHHHHH----HHHHHHHhCCCchhh
Q 035534          241 LGEKLLACGPGLTALGMVLKFIAGPAA----MAIGSIAAGLHGDVL  282 (291)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~rlil~Pli----~~~~~~~~~l~~~~~  282 (291)
                      .+.++.    |..-+..+.==+++|++    .+.+.+++|++.-..
T Consensus       226 ~rL~~l----~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~  267 (327)
T PF05982_consen  226 RRLRDL----RKVGWFLIAFGILMPLINALIGIGLGWLLGLSPGGA  267 (327)
T ss_pred             HhhHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccH
Confidence            333333    33333334444566655    445566778775443

>COG3329 Predicted permease [General function prediction only]

Probab=97.60  E-value=0.014  Score=51.75  Aligned_cols=215  Identities=13%  Similarity=0.055  Sum_probs=112.3

Q ss_pred             HHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHH
Q 035534           16 PLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWSMC   92 (291)
Q Consensus        16 pi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~~i~~~~~~~~~~~   92 (291)
                      |..+....|.+..- .| -|-+.-+.+.+.+..+.+=|.=|+.=.+...+.+   -.+......++.++.+..-+.++|+
T Consensus        18 P~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~kl   95 (372)
T COG3329          18 PTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKL   95 (372)
T ss_pred             chHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77888888887653 33 1222223344444444455555554333322222   2233333444555555555566676


Q ss_pred             hcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHH---HHHHHHHHHHHHHHHHHHhh---cccC----C--
Q 035534           93 SKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVV---QSSVFQSIVWLTIFLFVLEF---RRSG----N--  160 (291)
Q Consensus        93 ~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~----~--  160 (291)
                      .+.+. .|+.-.+   +.|+...-..+.-..+..-+.++.|-.   ...........-.+..+...   ++.+    +  
T Consensus        96 ~~vdt-vdaaA~a---g~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~aa~~~  171 (372)
T COG3329          96 PKVDT-VDAAATA---GTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAAAEAH  171 (372)
T ss_pred             cccch-HHHHHHH---hhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhccccccccccc
Confidence            56554 4433322   566666666666666666554443322   22222222222233333221   1111    0  


Q ss_pred             CCccc-c---cCCCC-C-------C--CCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHH
Q 035534          161 DSKDL-E---EGHVT-S-------S--SRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIM  226 (291)
Q Consensus       161 ~~~~~-~---~~~~e-~-------~--~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l  226 (291)
                      +|+.. +   ++++| +       +  +..+.+-..++.++..+.||.+...+.|+++.+.   .|-+--+.+++..+-+
T Consensus       172 s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~~v~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~l  248 (372)
T COG3329         172 SKQLVAAGEYGDQTDLASSRQEYLSPQWGEDNRVKIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDPL  248 (372)
T ss_pred             cccchhhcccCchhhhhhhhhhhcccccCcccchhhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHHH
Confidence            01000 0   11111 0       0  0111111256778889999999999999999887   3334445677788888


Q ss_pred             HhhhhHHHHHHhc
Q 035534          227 SKAGTGTAMFSMG  239 (291)
Q Consensus       227 ~~~~~plaL~~iG  239 (291)
                      =+....+-|+.+|
T Consensus       249 FqGvL~lflL~MG  261 (372)
T COG3329         249 FQGVLCLFLLDMG  261 (372)
T ss_pred             HHHHHHHHHHHHh
Confidence            8889999999999

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=96.96  E-value=0.22  Score=46.45  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHH
Q 035534           12 VAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISK   79 (291)
Q Consensus        12 ~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~   79 (291)
                      ..+-|..+.+.+|.++.- .|++|++......+.+..+.+|..++.-+.+.|+.+.   ..+.+..++++.
T Consensus        23 ~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~   92 (378)
T PF05684_consen   23 KYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGA   92 (378)
T ss_pred             hhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHH
Confidence            445578888999999865 8988655567799999999999999999999997753   455665555544

>TIGR00841 bass bile acid transporter

Probab=96.91  E-value=0.013  Score=52.53  Aligned_cols=141  Identities=8%  Similarity=0.010  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccC--CCCCcchhhHHHHHHHHHHHHH
Q 035534            7 VYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHV--DPFNMNYRFIGADAISKLIIVI   84 (291)
Q Consensus         7 ~~~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~--~~~~~~~~~i~~~~~~~~i~~~   84 (291)
                      +.+++.....+++=+.+|.+.+|+.+-+.+ ..+.+.++. .+.+=+.++..+...  ++.+..+.......+-..+.|.
T Consensus       133 ~~~i~~~~~~v~vPl~lG~~~r~~~p~~~~-~~~~~~~~s-~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~  210 (286)
T TIGR00841       133 YLGIGLSLVAVLIPVSIGMLVKHKLPQIAK-IILKVGLIS-VFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFL  210 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHhCchHH-HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            444444456667778889988543221111 111122211 122222333333222  1212234444444555667888


Q ss_pred             HHHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 035534           85 VLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFV  152 (291)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~  152 (291)
                      ++|.++|..+.+. .|+...++. ++..|.+ +|+++....|+++....+..|.+.+++..-.++.+.
T Consensus       211 ~g~~~a~~~~l~~-~~~~t~~~~-~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~  275 (286)
T TIGR00841       211 LGYLLAKLAGLPW-ARCRTISIE-VGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLF  275 (286)
T ss_pred             HHHHHHHHhCCCH-hhheeeeee-eecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899998766554 233333454 6667887 999999999987666556666666655555544443

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00841 bass bile acid transporter

Probab=96.36  E-value=0.0084  Score=53.82  Aligned_cols=64  Identities=17%  Similarity=0.039  Sum_probs=52.9

Q ss_pred             hhhhHHHHHHhc-CcCcccccc---chhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534          228 KAGTGTAMFSMG-ELGEKLLAC---GPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT  291 (291)
Q Consensus       228 ~~~~plaL~~iG-~l~~~~~~~---~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa~  291 (291)
                      -....++|+.+| +++.++.++   +.+........|++++|++++++...+++|+......++++++
T Consensus        11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~   78 (286)
T TIGR00841        11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCC   78 (286)
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeC
Confidence            344788999999 877665543   3456778888999999999999999999999999999998874

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00832 acr3 arsenical-resistance protein

Probab=95.77  E-value=0.059  Score=49.34  Aligned_cols=97  Identities=13%  Similarity=0.070  Sum_probs=64.4

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHH-HHHhhhhH------HHHHHhc-CcCcccc---ccchhHHHH
Q 035534          187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSIL-IMSKAGTG------TAMFSMG-ELGEKLL---ACGPGLTAL  255 (291)
Q Consensus       187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~-~l~~~~~p------laL~~iG-~l~~~~~---~~~~~~~~~  255 (291)
                      +|......+.++++|++....       .|+.....-. ...+...|      ..|+.+| +++.++.   .+++|....
T Consensus         5 ~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~   77 (328)
T TIGR00832         5 ERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLIL   77 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHH
Confidence            344445567778888888665       4433222211 11223333      4678888 7765443   456788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCchhhhhheeecc
Q 035534          256 GMVLKFIAGPAAMAIGSIAA-GLHGDVLRVSIIQVT  290 (291)
Q Consensus       256 ~~~~rlil~Pli~~~~~~~~-~l~~~~~~v~vl~aa  290 (291)
                      .....++++|+++++++..+ +.+++.+-..++.++
T Consensus        78 ~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~  113 (328)
T TIGR00832        78 SLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGL  113 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            99999999999999999874 999887776666554

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=95.66  E-value=0.068  Score=48.35  Aligned_cols=78  Identities=15%  Similarity=0.110  Sum_probs=56.0

Q ss_pred             CCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhee
Q 035534          212 HFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLL---ACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSII  287 (291)
Q Consensus       212 ~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~---~~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl  287 (291)
                      ....|+.....-. .-.....+.+|..| +++.++.   .+++|........-++++|++++++++++++|++...-.++
T Consensus        26 ~~~~~~~~~~~~~-~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~l  104 (319)
T COG0385          26 APIFPETFGWLGS-AIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLL  104 (319)
T ss_pred             HHhccccchhhhH-HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHh
Confidence            3334554333222 22566667777778 6654443   46788899999999999999999999999999998877766


Q ss_pred             ecc
Q 035534          288 QVT  290 (291)
Q Consensus       288 ~aa  290 (291)
                      ..+
T Consensus       105 l~~  107 (319)
T COG0385         105 LGC  107 (319)
T ss_pred             eee
Confidence            543

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=95.65  E-value=2  Score=40.44  Aligned_cols=254  Identities=11%  Similarity=0.039  Sum_probs=133.7

Q ss_pred             hHhhhhhccccChhhhhHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 035534           24 GYGSVKWWKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWSMCSKK   95 (291)
Q Consensus        24 G~~~~k~~~~l~~~~~~~l~~lv-----~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~~i~~~~~~~~~~~~~~   95 (291)
                      ...+.. +++++++..+..+++.     .|+..-+++--|+...|++-+   -.++++..+.+....++++.+...+...
T Consensus        69 ps~Lv~-~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~  147 (414)
T PF03390_consen   69 PSALVY-FGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGY  147 (414)
T ss_pred             HHHHHH-cCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            333334 6999999888888876     578889999999999986633   3467677777777777777777777665


Q ss_pred             Ccccchhhhh-c-cccccccccchhHHHHH-HhhccchhhH---HHHHHHHHHHHHHHHHHHHHhhcccC---CCCccc-
Q 035534           96 GSYFSWCITN-F-SLCTLTNTLVLGVPLMK-AMYGQMAVDL---VVQSSVFQSIVWLTIFLFVLEFRRSG---NDSKDL-  165 (291)
Q Consensus        96 ~~~~~~~i~~-~-~~~~~~N~~~~G~Pi~~-~l~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-  165 (291)
                      +. .|....- . ..+.-.+.|.+++...+ ...|++.-.+   ..-.....|++.-..+-.+-...+..   +.+.+. 
T Consensus       148 ~~-~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~  226 (414)
T PF03390_consen  148 SF-KDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLL  226 (414)
T ss_pred             CH-HHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEE
Confidence            54 3322111 1 11333345555555444 2344432222   22222222322221111111111110   011111 


Q ss_pred             -----ccC-CCCCCCCCchhhH------------HHHHHHHHhh-chhHHHHHHHHHHHHhhhhcCCCcch----hHHHH
Q 035534          166 -----EEG-HVTSSSRPPFWHL------------MKVVWLKLAK-NPNSYACVIGLAWAFVANRWHFKLPS----IIEGS  222 (291)
Q Consensus       166 -----~~~-~~e~~~~~~~~~~------------~~~~~~~~~~-nP~~ia~ilGl~l~~~~~~~~~~lP~----~i~~~  222 (291)
                           +++ ++|++++.+.++.            ....+.+.+. .++.+.+++..+++.+    ++ +|+    ...+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~----~l-vP~~~e~~a~~~  301 (414)
T PF03390_consen  227 KGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF----GL-VPESLEEGAKQW  301 (414)
T ss_pred             eCCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----Cc-CCHHHHHHHHHH
Confidence                 111 1112222221111            1223334443 3467788888888877    54 444    44556


Q ss_pred             HHHHHhhhhHHHHHHhc-C-cCccccccchhHHH-HHHHHHHHHHHHHHHHHHHHhCCCchhhhh
Q 035534          223 ILIMSKAGTGTAMFSMG-E-LGEKLLACGPGLTA-LGMVLKFIAGPAAMAIGSIAAGLHGDVLRV  284 (291)
Q Consensus       223 l~~l~~~~~plaL~~iG-~-l~~~~~~~~~~~~~-~~~~~rlil~Pli~~~~~~~~~l~~~~~~v  284 (291)
                      -++..+..++..|+.+| + .++++......... ..++.-.+-.-+.+..+.+++|+-|.+...
T Consensus       302 ~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAI  366 (414)
T PF03390_consen  302 YKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAI  366 (414)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence            67788889999999999 6 66655433332222 233333344444556667888888776543

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=94.57  E-value=3.7  Score=37.75  Aligned_cols=247  Identities=12%  Similarity=0.071  Sum_probs=130.8

Q ss_pred             ccccChhhhhHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhcCCcccchh
Q 035534           31 WKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWC  102 (291)
Q Consensus        31 ~~~l~~~~~~~l~~lv-----~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  102 (291)
                      +++++++..+..+++.     .|+..-|++--|+...|++-+   -.++++..+++....++.+.+...+...+. +|..
T Consensus         6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~-~~~~   84 (347)
T TIGR00783         6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGF-DHSL   84 (347)
T ss_pred             eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-hHhh
Confidence            5889999888888753     578889999999999986633   245666666666666666666777665544 2322


Q ss_pred             hhh-c-cccccccccchhHHHHHH-hhccchhhHHH---HHHHHHHHHHHHHHHHHHhhcc-----cCCCC----ccccc
Q 035534          103 ITN-F-SLCTLTNTLVLGVPLMKA-MYGQMAVDLVV---QSSVFQSIVWLTIFLFVLEFRR-----SGNDS----KDLEE  167 (291)
Q Consensus       103 i~~-~-~~~~~~N~~~~G~Pi~~~-l~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~  167 (291)
                      ..- . ..+.-.+.|..++...++ ..|++.-.|..   -.....|++.-..+-.+-...+     +|+.+    ++.|+
T Consensus        85 ~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~  164 (347)
T TIGR00783        85 MYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKRED  164 (347)
T ss_pred             heeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcch
Confidence            111 1 113434567777766665 56665433333   2222222222111111111100     11111    11111


Q ss_pred             --CCCCC-CCCCchhhH------------HHHHHHHHh--hchhHHHHHHHHHHHHhhhhcCCCcchhHHHHH----HHH
Q 035534          168 --GHVTS-SSRPPFWHL------------MKVVWLKLA--KNPNSYACVIGLAWAFVANRWHFKLPSIIEGSI----LIM  226 (291)
Q Consensus       168 --~~~e~-~~~~~~~~~------------~~~~~~~~~--~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l----~~l  226 (291)
                        +++|+ +.+.+.++.            ....+ +.+  -+++.+.++++.+++.+    ++- |+-+.+-.    ++.
T Consensus       165 ~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~-~~~~~Ih~~v~mII~~vi~k~~----gll-p~~i~~~a~~~~~F~  238 (347)
T TIGR00783       165 AEKAKEITEIKIDVKLMGSGVLFAVALFMAGGLL-KSFPGIPAYAFMILIAAALKAF----GLV-PKEIEEGAKMLSQFI  238 (347)
T ss_pred             hhhccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHh----CCC-CHHHHHHHHHHHHHH
Confidence              11111 111221111            11111 222  37899999999999988    664 43343333    355


Q ss_pred             HhhhhHHHHHHhc-C-cCccccccch-hHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhh
Q 035534          227 SKAGTGTAMFSMG-E-LGEKLLACGP-GLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRV  284 (291)
Q Consensus       227 ~~~~~plaL~~iG-~-l~~~~~~~~~-~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v  284 (291)
                      ....++..+..+| + .+++...... .+.....+.-.+-+-+..+.+.+++|+-|.+...
T Consensus       239 ~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aI  299 (347)
T TIGR00783       239 SKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAFLGKLMGMYPVESAI  299 (347)
T ss_pred             HHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence            5677777788788 5 5655443333 3333344444444445556678888887776554

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=94.07  E-value=0.095  Score=43.86  Aligned_cols=61  Identities=21%  Similarity=0.159  Sum_probs=45.3

Q ss_pred             hhHHHHHHhc-CcCccccc---cchhHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhhhheeecc
Q 035534          230 GTGTAMFSMG-ELGEKLLA---CGPGLTALGMVLKFIAGPAAMAIGS-IAAGLHGDVLRVSIIQVT  290 (291)
Q Consensus       230 ~~plaL~~iG-~l~~~~~~---~~~~~~~~~~~~rlil~Pli~~~~~-~~~~l~~~~~~v~vl~aa  290 (291)
                      ...+.|+.+| +++.++.+   ++.|......+.+++++|++++++. ..++.++..+...+++++
T Consensus         3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~   68 (187)
T PF01758_consen    3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAA   68 (187)
T ss_dssp             HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHH
T ss_pred             hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            3457889999 87766654   4456677788999999999999998 889999998877777664

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=92.89  E-value=5.6  Score=36.04  Aligned_cols=51  Identities=20%  Similarity=0.081  Sum_probs=37.6

Q ss_pred             chh-HHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccc
Q 035534          192 NPN-SYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLA  247 (291)
Q Consensus       192 nP~-~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~  247 (291)
                      -|. ++++++..+++..     ...|+.+.+.++.+++-..-++|..+| +.+.++.+
T Consensus       243 ~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~l~  295 (305)
T PF03601_consen  243 FPWFVLGFLAASLLNSL-----GLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKDLK  295 (305)
T ss_pred             cCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHH
Confidence            453 4455555555543     357788889999999999999999999 88776654

; GO: 0016021 integral to membrane

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=91.95  E-value=3.2  Score=37.78  Aligned_cols=136  Identities=15%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccC---CC-CCcchhhHHH-HHHHH---HHHHHH
Q 035534           14 MVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHV---DP-FNMNYRFIGA-DAISK---LIIVIV   85 (291)
Q Consensus        14 vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~---~~-~~~~~~~i~~-~~~~~---~i~~~~   85 (291)
                      ...+++=..+|-+++|+.+-..+. .+...+.+-...+-.+++.++.+.   +. ++.+...+.. ..+..   .+.+.+
T Consensus       164 ~~~vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  242 (313)
T PF13593_consen  164 VLTVLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVL  242 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345555667788885432211122 244455567777777777777665   21 1233322222 11111   223344


Q ss_pred             HHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHHHHHH
Q 035534           86 LAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM-AVDLVVQSSVFQSIVWLTIFLFVL  153 (291)
Q Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~-~~~~~~~~~~~~~~~~~~~~~~~~  153 (291)
                      .+..+|..+.++ +|+. ..+. |.-..+.-.|+|+...+|++. ..+.+.+=.+.....+.-++-.+.
T Consensus       243 ~~~~~r~~~~~~-~d~i-A~~F-~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la  308 (313)
T PF13593_consen  243 GWLAARLLGFSR-PDRI-AVLF-CGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLA  308 (313)
T ss_pred             HHHHHhhcCCCh-hhEE-EEEE-EcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHH
Confidence            466677665544 3322 2223 444788899999999999875 333333333333333333444443

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=90.57  E-value=1.2  Score=38.35  Aligned_cols=97  Identities=10%  Similarity=-0.013  Sum_probs=70.6

Q ss_pred             HHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc---CcCccccccchhHHHHHHHHHHH
Q 035534          186 WLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFI  262 (291)
Q Consensus       186 ~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG---~l~~~~~~~~~~~~~~~~~~rli  262 (291)
                      .|+.+.||.+++.++.+.+-..   .+++..+ -..--+++....-| +..++.   -.+++..+++|+++...+++=-+
T Consensus        28 ~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~-Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~  102 (230)
T COG1346          28 TKSPFLNPLLVATVLLIAFLLL---FGISYED-YMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSV  102 (230)
T ss_pred             cCCcccchHHHHHHHHHHHHHH---cCCCHHH-HhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556789999998877766553   3555544 34455666666666 677777   24556667889999988888888


Q ss_pred             HHHHHHHHHHHHhCCCchhhhhhee
Q 035534          263 AGPAAMAIGSIAAGLHGDVLRVSII  287 (291)
Q Consensus       263 l~Pli~~~~~~~~~l~~~~~~v~vl  287 (291)
                      ..-...+.+.+++|+|++..+...=
T Consensus       103 ~ai~s~~llak~~g~~~~~~~Sl~P  127 (230)
T COG1346         103 VAIISGVLLAKLFGLSPELILSLLP  127 (230)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHhcc
Confidence            8888889999999999988766543

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=89.21  E-value=7.7  Score=35.27  Aligned_cols=132  Identities=12%  Similarity=0.023  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHH
Q 035534           15 VPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMN--YRFIGADAISKLIIVIVLAFWSMC   92 (291)
Q Consensus        15 lpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~~--~~~i~~~~~~~~i~~~~~~~~~~~   92 (291)
                      ..+++=..+|-+++++.+-.-+ ..+..-..+-...+=+.++..++....+..+  .....+..+-..+.+.++|..+|+
T Consensus       168 ~~vllP~~LG~~~r~~~~~~~~-~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~  246 (319)
T COG0385         168 LQVLLPFVLGQLLRPLLPKWVE-RLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARL  246 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555667788888443221111 1223333444455555666666554322112  222233344556778888889998


Q ss_pred             hcCCcccchhhhhccccccccccchhHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHH
Q 035534           93 SKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYG-QMAVDLVVQSSVFQSIVWLTIFL  150 (291)
Q Consensus        93 ~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G-~~~~~~~~~~~~~~~~~~~~~~~  150 (291)
                      .+.++ .|+...++. .+-.|. -.|.|+....++ +.......+|...|++..-.++.
T Consensus       247 ~g~~~-a~~iti~ie-~g~qn~-~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~  302 (319)
T COG0385         247 LGFDK-ADEITIAIE-GGMQNL-GLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAG  302 (319)
T ss_pred             hCCCh-hheeeEEEe-eccccH-HHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            87665 222222332 454554 789999999556 34444555565555544433333

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=88.88  E-value=2.3  Score=39.16  Aligned_cols=100  Identities=10%  Similarity=0.059  Sum_probs=63.7

Q ss_pred             HHHHHHHhHhhhhhccccChhhh---hHHHHHHHHHHhHHHHH-HHhccCCCCCc----chhhHHHHHHHHHHHHHHHHH
Q 035534           17 LYFALMLGYGSVKWWKIIAPEEC---AAINRLVCYFTLPLFTI-EFTTHVDPFNM----NYRFIGADAISKLIIVIVLAF   88 (291)
Q Consensus        17 i~lii~~G~~~~k~~~~l~~~~~---~~l~~lv~~v~lP~lif-~~i~~~~~~~~----~~~~i~~~~~~~~i~~~~~~~   88 (291)
                      ...++.+|.++ |..|+++++..   +...+++.+..++.++. .+++..|++++    +++.+.....+.+...+.+++
T Consensus       207 ~v~mII~~vi~-k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l  285 (347)
T TIGR00783       207 YAFMILIAAAL-KAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF  285 (347)
T ss_pred             HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence            55677888888 55899997654   44665666656665555 57777776643    355554444455555666678


Q ss_pred             HHHHhcCCcccchhhhh-ccccccccccchh
Q 035534           89 WSMCSKKGSYFSWCITN-FSLCTLTNTLVLG  118 (291)
Q Consensus        89 ~~~~~~~~~~~~~~i~~-~~~~~~~N~~~~G  118 (291)
                      .+|+.+-.+ -|..+.+ ++.+..+-+|.++
T Consensus       286 vGKllG~YP-iE~aItagLC~~~~GGtGDva  315 (347)
T TIGR00783       286 LGKLMGMYP-VESAITAGLCNSGMGGTGDVA  315 (347)
T ss_pred             HHHHhCCCh-HHHHHHHhhhccCCCCCCcee
Confidence            899877655 5666665 3335556666554

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=86.68  E-value=4.5  Score=36.67  Aligned_cols=89  Identities=16%  Similarity=0.054  Sum_probs=62.4

Q ss_pred             hhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHH
Q 035534          190 AKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAM  268 (291)
Q Consensus       190 ~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~  268 (291)
                      --++.++|+++|++++-.    -...|+....-++.-++-....+...+| +++..+....-.........-....=.+.
T Consensus        25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~  100 (305)
T PF03601_consen   25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLT  100 (305)
T ss_pred             CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            347889999999999821    2578899999999999999999999999 88776544222222333333344444445


Q ss_pred             HHHH-HHhCCCchhh
Q 035534          269 AIGS-IAAGLHGDVL  282 (291)
Q Consensus       269 ~~~~-~~~~l~~~~~  282 (291)
                      +.+. +.+++|....
T Consensus       101 ~~lg~r~~~l~~~~~  115 (305)
T PF03601_consen  101 YWLGRRLFGLDRKLA  115 (305)
T ss_pred             HHHHHHHhCCCHHHH
Confidence            5556 8889986653

; GO: 0016021 integral to membrane

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=86.37  E-value=1.9  Score=39.27  Aligned_cols=91  Identities=19%  Similarity=0.116  Sum_probs=61.6

Q ss_pred             chhHHHHHHHHHHHHhhhhcCCCcchhHHHHH--HHHHhhhhHHHHHHhc-CcCcccc---ccchhHHHHHHHHHHHHHH
Q 035534          192 NPNSYACVIGLAWAFVANRWHFKLPSIIEGSI--LIMSKAGTGTAMFSMG-ELGEKLL---ACGPGLTALGMVLKFIAGP  265 (291)
Q Consensus       192 nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l--~~l~~~~~plaL~~iG-~l~~~~~---~~~~~~~~~~~~~rlil~P  265 (291)
                      |+.+++.++++.+...     .|-|+.-....  +...+..+.+..+.-| +++.+..   .+++|........-+++.|
T Consensus         1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P   75 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP   75 (313)
T ss_pred             CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            4567788888888765     23333222222  2455666888999999 7765444   3577888888999999999


Q ss_pred             HHHHHHHHHhC--CCchhhhhhee
Q 035534          266 AAMAIGSIAAG--LHGDVLRVSII  287 (291)
Q Consensus       266 li~~~~~~~~~--l~~~~~~v~vl  287 (291)
                      ++++++..+.+  .+++.....++
T Consensus        76 ll~~~~~~l~~~~~~~~l~~Gl~~   99 (313)
T PF13593_consen   76 LLGFGLSRLFPAFLPPELALGLLI   99 (313)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHH
Confidence            99999988874  45554444433

>COG5505 Predicted integral membrane protein [Function unknown]

Probab=85.52  E-value=28  Score=31.55  Aligned_cols=134  Identities=11%  Similarity=0.033  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCC---cchhhHHHHHHHHH---HHHHHHH
Q 035534           14 MVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFN---MNYRFIGADAISKL---IIVIVLA   87 (291)
Q Consensus        14 vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~---~~~~~i~~~~~~~~---i~~~~~~   87 (291)
                      ..|-.+++-+|...--..|.++  ..+...+.+-|..+|++++.-+.+-|..+   +..+++..++++.+   +.+.+.+
T Consensus        31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y  108 (384)
T COG5505          31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY  108 (384)
T ss_pred             hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            3466666777764423478885  66778889999999999999999888664   34455444443332   3333333


Q ss_pred             HHHHHhcCCcccchhhhhc-cccccccccchhHHHHHHhh--ccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035534           88 FWSMCSKKGSYFSWCITNF-SLCTLTNTLVLGVPLMKAMY--GQMAVDLVVQSSVFQSIVWLTIFLFVLE  154 (291)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~~-~~~~~~N~~~~G~Pi~~~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (291)
                      ..-|-...+.   +...++ ..+--+  |-.-..-.++.+  +++..++....|.+.--+.+.+-.++..
T Consensus       109 p~~ksf~gd~---Wka~gmi~gSytG--GSaNmAAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iVp  173 (384)
T COG5505         109 PLLKSFIGDL---WKAGGMISGSYTG--GSANMAAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVP  173 (384)
T ss_pred             HHHhhhcchH---HhhhhheeeeeeC--CcchHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322111121   222222 211111  122233445554  3455566666666554444455555543

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=84.91  E-value=4.4  Score=34.77  Aligned_cols=94  Identities=12%  Similarity=-0.013  Sum_probs=66.1

Q ss_pred             HHHHhhchhHHHHHH-HHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-C--cCccccccchhHHHHHHHHHH
Q 035534          186 WLKLAKNPNSYACVI-GLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-E--LGEKLLACGPGLTALGMVLKF  261 (291)
Q Consensus       186 ~~~~~~nP~~ia~il-Gl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~--l~~~~~~~~~~~~~~~~~~rl  261 (291)
                      +++.+.||.+++.++ -.++...    +++..+. .+.-+++....-|- ..+++ -  .+.+..+++++++...+..=-
T Consensus        15 ~~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y-~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~   88 (215)
T PF04172_consen   15 FKSPFLNPLLIAIVLIIAFLLLT----GIPYEDY-MQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGS   88 (215)
T ss_pred             cCCCcccHHHHHHHHHHHHHHHH----CCCHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567999988776 3344444    6666554 34566665555553 67777 2  345556778888888888888


Q ss_pred             HHHHHHHHHHHHHhCCCchhhhhh
Q 035534          262 IAGPAAMAIGSIAAGLHGDVLRVS  285 (291)
Q Consensus       262 il~Pli~~~~~~~~~l~~~~~~v~  285 (291)
                      ++.-...+.+++++|+|++.....
T Consensus        89 ~~~~~~~~~l~~~lgl~~~~~~Sl  112 (215)
T PF04172_consen   89 LVSIFSAVLLARLLGLSPEIILSL  112 (215)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHH
Confidence            888888899999999998876543

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=83.65  E-value=3.8  Score=37.03  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 035534          195 SYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSI  273 (291)
Q Consensus       195 ~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~  273 (291)
                      ++=.++|.+++-+-+.. .+.=...++.+..-+++...+-++|.| +++.|......|+-...+..|+++.-++.+.+.+
T Consensus        16 vVPLllgalinTf~P~~-l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~   94 (314)
T PF03812_consen   16 VVPLLLGALINTFFPNA-LEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGK   94 (314)
T ss_pred             HHHHHHHHHHHhcCCCh-hhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            44455666666551100 010122344443456677788899999 8999888888889999999999999999999999


Q ss_pred             HhCCCch
Q 035534          274 AAGLHGD  280 (291)
Q Consensus       274 ~~~l~~~  280 (291)
                      ++|-++.
T Consensus        95 ~fg~~Gi  101 (314)
T PF03812_consen   95 FFGPEGI  101 (314)
T ss_pred             HcCcccc
Confidence            9988864

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PRK10711 hypothetical protein; Provisional

Probab=82.06  E-value=4.8  Score=34.90  Aligned_cols=95  Identities=6%  Similarity=-0.082  Sum_probs=65.5

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc---CcCccccccchhHHHHHHHHHHHH
Q 035534          187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIA  263 (291)
Q Consensus       187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG---~l~~~~~~~~~~~~~~~~~~rlil  263 (291)
                      ++.+.||.+++.++-+.+-..   .+++..+. .+..+++.....| +..+++   -.+.+..|++++++...+.+=-++
T Consensus        27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v  101 (231)
T PRK10711         27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV  101 (231)
T ss_pred             CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            556779998887655544432   26665554 4455666655544 344555   234556677888888888888888


Q ss_pred             HHHHHHHHHHHhCCCchhhhhhe
Q 035534          264 GPAAMAIGSIAAGLHGDVLRVSI  286 (291)
Q Consensus       264 ~Pli~~~~~~~~~l~~~~~~v~v  286 (291)
                      .-...+.+++.+|+|++......
T Consensus       102 ~i~s~~~l~~~lg~~~~~~~Sl~  124 (231)
T PRK10711        102 AMVTGTAVALWMGATPEIAASIL  124 (231)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHh
Confidence            88899999999999988776543

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=81.69  E-value=6.7  Score=34.00  Aligned_cols=94  Identities=14%  Similarity=-0.037  Sum_probs=64.2

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc---CcCccccccchhHHHHHHHHHHHH
Q 035534          187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIA  263 (291)
Q Consensus       187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG---~l~~~~~~~~~~~~~~~~~~rlil  263 (291)
                      ++.+.||.+++.++-+.+-..   .+++..+. .+--+++....-| +..+++   -.+.+..|++++++...+.+=-++
T Consensus        32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~  106 (232)
T PRK04288         32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC  106 (232)
T ss_pred             CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            445679998887765554432   25555544 4455555554444 344555   245566678888888888888888


Q ss_pred             HHHHHHHHHHHhCCCchhhhhh
Q 035534          264 GPAAMAIGSIAAGLHGDVLRVS  285 (291)
Q Consensus       264 ~Pli~~~~~~~~~l~~~~~~v~  285 (291)
                      .-...+.+++++|+|++.....
T Consensus       107 ~i~s~~~la~~lgl~~~~~~Sl  128 (232)
T PRK04288        107 SVLIIYLVAKLIQLDNAVMASM  128 (232)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHH
Confidence            8888999999999998876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.36
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.03

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.36  E-value=0.00038  Score=62.56  Aligned_cols=96  Identities=20%  Similarity=0.123  Sum_probs=73.8

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccc---cchhHHHHHHHHHHH
Q 035534          187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLA---CGPGLTALGMVLKFI  262 (291)
Q Consensus       187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~---~~~~~~~~~~~~rli  262 (291)
                      .+.+.++..+.++++.+++..       .|+... .++..-....+++|+..| +++.++.+   +++|........+++
T Consensus        13 ~~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v   84 (332)
T 3zux_A           13 SSFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA   84 (332)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence            455678888888888888776       333211 233344567889999999 88776655   566777888999999


Q ss_pred             HHHHHHHHHHHHhCCCchhhhhheeecc
Q 035534          263 AGPAAMAIGSIAAGLHGDVLRVSIIQVT  290 (291)
Q Consensus       263 l~Pli~~~~~~~~~l~~~~~~v~vl~aa  290 (291)
                      ++|+++++++..+++|+......+++++
T Consensus        85 i~Pll~~~l~~~~~l~~~~~~Glil~~~  112 (332)
T 3zux_A           85 IMPATAWCLSKLLNLPAEIAVGVILVGC  112 (332)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence            9999999999999999998888877765

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.03  E-value=0.0066  Score=54.37  Aligned_cols=68  Identities=13%  Similarity=-0.010  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhcc--chhhHHHHHHHHHHHHH
Q 035534           75 DAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQ--MAVDLVVQSSVFQSIVW  145 (291)
Q Consensus        75 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~--~~~~~~~~~~~~~~~~~  145 (291)
                      ..+...+.|.+++..+|..+.++ .++.-.++. ++..|+ -+|+|+....||+  .......+|.+.|++.-
T Consensus       234 ~~l~~~~~~~lg~~~~r~~~~~~-~~~~ti~~e-~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~  303 (332)
T 3zux_A          234 VVLHNGIGYLLGFFAAKWTGLPY-DAQKALTIE-VGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNISG  303 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHH-HHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCH-hHhhhhhhh-hhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            33444567778888899877665 343333454 455677 5999999999963  33334445555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00