Citrus Sinensis ID: 035558

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Secondary Structure (PSIPRED)
ccccccEEEEEcccEEEEEcccccccccccEEccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEcccccccEEEEEcccccccEEEEEEccccEEEEEEcccccccEEEcccccccEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccEEEEEEccEEEEEEEccccccEEEEEccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccccEEccccccccccccccEEEcccccccccccccccccccccccEEEEEccccEEEEEEccccccEEEEEEcccEEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEcccccccEEEEEccccccEEEEEEcccccEEEEEEcccccccEEEEEcccccEcEEEEccccccEEEEcccccEEEEEEccccccccccccccHHHEccccEEcccccccccccEEEEEcccEEEEEEc
Coil and Loop (DISEMBL)
ecqkpdllatssdFLRVWRISDEDRRVELKSLLngnknseycgpltsfdwneaeprrigtssidttctIWDIEREAVDTQLIAhdkevydiawGGVGVFASVsadgsvrvfdlrdkehstiiyessepdtplvrlgwnkqdprymATIIMDSAKVVVLdirfptlpvvELQRHQASVnaiawaphsschictagddSQALIWDLssmgqpveggldpilaYTAGAEIEqlqwsssqpDWVAIAFSTKLQILRV
Flexible Loop (DISEMBL)
ecqkpdllatssdflrvwrisdEDRRVELKsllngnknseycgpltsfdwneaeprrigtssidttctiWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHStiiyessepdtplvrlGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Low Complexity Region (SEG)
ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Disordered region (IsUnstruct)
************DFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI***
Disordered Region (DISOPRED)
*CQKPDLLATSSDFLRVWRISDE****************EYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHS****ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG*****GLD*ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Disordered Region (DISEMBL)
ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Disordered Region (DISPRO)
***KPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q9LPV9	346	WD repeat-containing prot	yes	no	1.0	0.731	0.944	1e-139
Q38960	346	WD repeat-containing prot	no	no	1.0	0.731	0.893	1e-132
Q9XGN1	341	Protein TRANSPARENT TESTA	no	no	0.972	0.721	0.709	1e-104
Q552R1	325	DDB1- and CUL4-associated	yes	no	0.972	0.756	0.634	4e-89
P61963	342	DDB1- and CUL4-associated	yes	no	0.960	0.710	0.609	7e-87
P61962	342	DDB1- and CUL4-associated	yes	no	0.960	0.710	0.609	7e-87
Q12523	523	WD repeat-containing prot	yes	no	0.798	0.386	0.417	2e-39
O74763	435	Uncharacterized WD repeat	yes	no	0.845	0.491	0.413	3e-39
Q75C99	423	Histone acetyltransferase	no	no	0.573	0.342	0.309	9e-13
Q54WA3	316	Peroxisomal targeting sig	no	no	0.723	0.579	0.248	1e-11

>sp|Q9LPV9|LWD1_ARATH WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1

 Score =  494 bits (1271), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/253 (94%), Positives = 246/253 (97%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           ECQ+PDLLATSSDFLR+WRI+D+  RVELKS LN NKNSE+CGPLTSFDWNEAEPRRIGT
Sbjct: 94  ECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGT 153

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SS DTTCTIWDIEREAVDTQLIAHDKEV+DIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 154 SSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHST 213

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP LPVVELQRHQASVNAI
Sbjct: 214 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPALPVVELQRHQASVNAI 273

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWD+SSMGQ VEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 274 AWAPHSSCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 333

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 334 AIAFSTKLQILRV 346

Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. May function to delay the expression of the morning genes until dawn approaches.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38960|LWD2_ARATH WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1

 Score =  471 bits (1213), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/253 (89%), Positives = 239/253 (94%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           ECQ+PDLLATSSDFLR+WRISD++ RVELKS L+ +KNSE+ GP+TSFDWNEAEPRRIGT
Sbjct: 94  ECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGT 153

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIERE VDTQLIAHDKEVYDIAWGGVGVFASVS DGSVRVFDLRDKEHST
Sbjct: 154 SSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHST 213

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYES EP TPLVRL WNKQDPRYMAT+IM SAK+VVLDIRFP LPVVELQRHQASVNAI
Sbjct: 214 IIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFPALPVVELQRHQASVNAI 273

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSS HIC+AGDDSQALIWD+SSMGQ VEGGLDPILAYTAGAE+EQLQWSSSQPDWV
Sbjct: 274 AWAPHSSSHICSAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEVEQLQWSSSQPDWV 333

Query: 241 AIAFSTKLQILRV 253
           AIAFS KLQILRV
Sbjct: 334 AIAFSNKLQILRV 346

Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XGN1|TTG1_ARATH Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/248 (70%), Positives = 210/248 (84%), Gaps = 2/248 (0%)

Query: 6   DLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 65
           DLLA+S DFLR+W I+++   VE  S+LN +K SE+C PLTSFDWN+ EP+R+GT SIDT
Sbjct: 96  DLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDT 155

Query: 66  TCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES 125
           TCTIWDIE+  V+TQLIAHDKEV+DIAWG   VFASVSADGSVR+FDLRDKEHSTIIYES
Sbjct: 156 TCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYES 215

Query: 126 SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH 185
            +PDTPL+RL WNKQD RYMATI+MDS KVV+LDIR PT+PV EL+RHQASVNAIAWAP 
Sbjct: 216 PQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQ 275

Query: 186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS 245
           S  HIC+ GDD+QALIW+L ++  P   G+DP+  Y+AG+EI QLQWSSSQPDW+ IAF+
Sbjct: 276 SCKHICSGGDDTQALIWELPTVAGP--NGIDPMSVYSAGSEINQLQWSSSQPDWIGIAFA 333

Query: 246 TKLQILRV 253
            K+Q+LRV
Sbjct: 334 NKMQLLRV 341

May regulate MYC transcription factors. Involved in epidermal cell fate specification such as trichome and root hair development, seed mucilage production, and anthocyanin biosynthesis by acting at the dihydorflavonol-4-reductase (DFR) step. Together with GL1 and GL3, promotes trichome formation. Activates the transcription of GL2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q552R1|DCAF7_DICDI DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2

 Score =  327 bits (839), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 160/252 (63%), Positives = 195/252 (77%), Gaps = 6/252 (2%)

Query: 3   QKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
            +PDLLAT+ D+LR+W +    R ++LKSLL  N  SE+C PL+SFDWNE +P  + TSS
Sbjct: 79  NRPDLLATTGDYLRLWEVGSNQRSIKLKSLLT-NVISEFCAPLSSFDWNETDPSLLATSS 137

Query: 63  IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI 121
           IDTTCTIW+IE     TQLIAHDKEV+DIA+  G  +FASV ADGS+R+FDLR+ EHSTI
Sbjct: 138 IDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASVGADGSLRMFDLRNLEHSTI 197

Query: 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIA 181
           IYE+     PL+RL WNKQDP Y+ATI  DS KV++LDIR P++P  EL  H+++VN I+
Sbjct: 198 IYETPS-FVPLLRLCWNKQDPNYLATIQQDSPKVIILDIRVPSVPAAELVFHKSAVNGIS 256

Query: 182 WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA 241
           WAPHSSCHICT  DD QALIWDLSSM +P+E   DP+L Y A AEI QL WSSSQPDW+A
Sbjct: 257 WAPHSSCHICTVSDDKQALIWDLSSMPKPIE---DPLLTYNALAEINQLSWSSSQPDWIA 313

Query: 242 IAFSTKLQILRV 253
           IAFS+ LQIL+V
Sbjct: 314 IAFSSHLQILKV 325

Dictyostelium discoideum (taxid: 44689)

>sp|P61963|DCAF7_MOUSE DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1

 Score =  320 bits (819), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 161/264 (60%), Positives = 192/264 (72%), Gaps = 21/264 (7%)

Query: 5   PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID 64
           PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSID
Sbjct: 85  PDLLATSGDYLRVWRVGETETRLE--CLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSID 142

Query: 65  TTCTIWDIEREAV-----------DTQLIAHDKEVYDIAW----GGVGVFASVSADGSVR 109
           TTCTIW +E   V            TQLIAHDKEVYDIA+    GG  +FASV ADGSVR
Sbjct: 143 TTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVR 202

Query: 110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
           +FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+ MD  +VV+LD+R P  PV  
Sbjct: 203 MFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVAR 261

Query: 170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
           L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  
Sbjct: 262 LNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINN 318

Query: 230 LQWSSSQPDWVAIAFSTKLQILRV 253
           +QW+S+QPDW+AI ++  L+ILRV
Sbjct: 319 VQWASTQPDWIAICYNNCLEILRV 342

Involved in craniofacial development. Acts upstream of the EDN1 pathway and is required for formation of the upper jaw equivalent, the palatoquadrate. The activity required for EDN1 pathway function differs between the first and second arches. Associates with DIAPH1 and controls GLI1 transcriptional activity. Could be involved in skin development. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|P61962|DCAF7_HUMAN DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1

 Score =  320 bits (819), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 161/264 (60%), Positives = 192/264 (72%), Gaps = 21/264 (7%)

Query: 5   PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID 64
           PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSID
Sbjct: 85  PDLLATSGDYLRVWRVGETETRLE--CLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSID 142

Query: 65  TTCTIWDIEREAV-----------DTQLIAHDKEVYDIAW----GGVGVFASVSADGSVR 109
           TTCTIW +E   V            TQLIAHDKEVYDIA+    GG  +FASV ADGSVR
Sbjct: 143 TTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVR 202

Query: 110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
           +FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+ MD  +VV+LD+R P  PV  
Sbjct: 203 MFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVAR 261

Query: 170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
           L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  
Sbjct: 262 LNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINN 318

Query: 230 LQWSSSQPDWVAIAFSTKLQILRV 253
           +QW+S+QPDW+AI ++  L+ILRV
Sbjct: 319 VQWASTQPDWIAICYNNCLEILRV 342

Involved in craniofacial development. Acts upstream of the EDN1 pathway and is required for formation of the upper jaw equivalent, the palatoquadrate. The activity required for EDN1 pathway function differs between the first and second arches (By similarity). Associates with DIAPH1 and controls GLI1 transcriptional activity. Could be involved in normal and disease skin development. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q12523|YP247_YEAST WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL247C PE=1 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/237 (41%), Positives = 132/237 (55%), Gaps = 35/237 (14%)

Query: 5   PDLLATSSDFLRVWRISDEDRRVELK---SLLNGNK----------NSEYCG---PLTSF 48
           P  LAT SD LR+W +S E+R+ + +   SL   N+          + +  G   P+TSF
Sbjct: 190 PRKLATCSDSLRIWSVSPEERQFQEQINLSLCKYNRQHPANPAAADDMKVIGTFPPITSF 249

Query: 49  DWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQLIAHDKEVYDIAW--GGVGVFASVSAD 105
           DWN  +   I +SSIDTTC +WD++    V TQLIAHD EV+D+ +      +FAS   D
Sbjct: 250 DWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFDVRFLTKSTQLFASCGGD 309

Query: 106 GSVRVFDLRDKEHSTIIYE----------------SSEPDTPLVRLGWNKQDPRYMATII 149
           GSVRVFDLR   HSTIIYE                SS+    L+RL  +  DP  +AT  
Sbjct: 310 GSVRVFDLRSLAHSTIIYEPPSSSVSGATAGTITPSSKGSDALLRLEPSPYDPNVLATFA 369

Query: 150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206
            DS K+++LD+R P  P++ LQ H +SVN I W P     + + GDD Q L WDL+S
Sbjct: 370 ADSNKIIILDMRNPESPILNLQGHGSSVNGIKWHPTKRNVLLSCGDDCQVLYWDLNS 426

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74763|YBE8_SCHPO Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC17D11.08 PE=1 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 23/237 (9%)

Query: 7   LLATSSDFLRVWRISDE---DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI 63
           LLA++   LR+W+   E   D  +  ++ L+ +  +    PLTSFDW + +P  I  SS+
Sbjct: 128 LLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSYIVVSSL 187

Query: 64  DTTCTIWDIEREAVDTQLIAHDKEVYDIAW--GGVGVFASVSADGSVRVFDLRDKEHSTI 121
           DTTCT+WDI  +   TQLIAHDKEVYD+A+    + VF SV ADGSVR+FDLR  +HSTI
Sbjct: 188 DTTCTVWDIVAQQSKTQLIAHDKEVYDVAFLKDSINVFVSVGADGSVRMFDLRSLDHSTI 247

Query: 122 IYE--------------SSEP-DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP 166
           IYE              +S P   PL+RL     D   MAT   +S+ V ++DIR P   
Sbjct: 248 IYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDSDVNLMATFHHNSSDVQMIDIRVPGTA 307

Query: 167 VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA 223
              L+ H+  VNA+ W P S   + T GDD    +WDL    QPV     P L+ + 
Sbjct: 308 YATLRGHKGDVNAVKWMPGSKSKLATCGDDCVVSLWDLD---QPVNPSPAPTLSVSG 361

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q75C99|HAT2_ASHGO Histone acetyltransferase type B subunit 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HAT2 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 7/152 (4%)

Query: 60  TSSIDTTCTIWDIER-EAVDTQLIAHDKEVYDIAWGGV--GVFASVSADGSVRVFDLRDK 116
           + S DTT  +WDIE  +   + L +HD  V D+ W      VF +VS D +++V D R +
Sbjct: 204 SGSDDTTVALWDIEAAKKPKSILTSHDDIVNDVKWHEFESNVFGTVSEDKTLQVHDKRVR 263

Query: 117 EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQAS 176
                   ++   +P   L ++K     +A   +DS ++ + D+R  + P+  +  HQ S
Sbjct: 264 LEPVKKLPTA---SPFNTLSFSKHSRNLLAAAGVDS-QIYLYDMRDMSSPLHVMSGHQDS 319

Query: 177 VNAIAWAPHSSCHICTAGDDSQALIWDLSSMG 208
           V  + ++PH+   IC++G D +A+IWDL+ +G
Sbjct: 320 VTTVEFSPHTDGIICSSGSDRRAIIWDLTQIG 351

Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q54WA3|PEX7_DICDI Peroxisomal targeting signal 2 receptor OS=Dictyostelium discoideum GN=pex7 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 6/189 (3%)

Query: 40  EYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GVG 97
           E+   + S DWN        T S D +  IW+   +        H   +Y   W      
Sbjct: 102 EHTKEVYSVDWNLVTKDTFITGSWDQSIKIWNPRMDRSLKTFREHRYCIYSAIWSPRNAH 161

Query: 98  VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV 157
           +FASVS D +++++D RD      I      D  ++   WNK + + + T  +D   + +
Sbjct: 162 LFASVSGDRTLKIWDSRDNRSLNTI---KAHDHEILTCDWNKYNDKEVVTGSVDKT-IRI 217

Query: 158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP 217
            DIR+P  P   L+ H  +V  I  +PHS   + +   D   ++WD +    P+   +D 
Sbjct: 218 WDIRYPDRPTTILRGHTYAVRRIKCSPHSESMLASCSYDMSVIVWDRAREQDPIIARMDH 277

Query: 218 ILAYTAGAE 226
              +  G +
Sbjct: 278 HTEFVVGLD 286

Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
224064804	346	predicted protein [Populus trichocarpa]	1.0	0.731	0.972	1e-142
224101817	346	predicted protein [Populus trichocarpa]	1.0	0.731	0.968	1e-141
22324803	346	WD-repeat protein GhTTG2 [Gossypium hirs	1.0	0.731	0.964	1e-141
449455770	346	PREDICTED: WD repeat-containing protein	1.0	0.731	0.964	1e-140
13346196	314	WD1521 [Gossypium hirsutum]	1.0	0.805	0.960	1e-140
22324809	346	WD-repeat protein GhTTG4 [Gossypium hirs	1.0	0.731	0.944	1e-139
255543451	346	WD-repeat protein, putative [Ricinus com	1.0	0.731	0.948	1e-138
225451689	344	PREDICTED: WD repeat-containing protein	0.992	0.729	0.956	1e-138
357508531	513	WD repeat protein [Medicago truncatula]	0.996	0.491	0.941	1e-138
356561070	344	PREDICTED: WD repeat-containing protein	0.992	0.729	0.956	1e-138

>gi|224064804|ref|XP_002301564.1| predicted protein [Populus trichocarpa] gi|222843290|gb|EEE80837.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/253 (97%), Positives = 249/253 (98%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           ECQKPDLLATSSDFLRVWRI+DE  RVELKSLLNGNKNSE+CGPLTSFDWNEAEPRRIGT
Sbjct: 94  ECQKPDLLATSSDFLRVWRINDEQPRVELKSLLNGNKNSEFCGPLTSFDWNEAEPRRIGT 153

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIERE VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 154 SSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 213

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH ASVNA+
Sbjct: 214 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHHASVNAV 273

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 274 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 333

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 334 AIAFSTKLQILRV 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101817|ref|XP_002334240.1| predicted protein [Populus trichocarpa] gi|224131364|ref|XP_002321066.1| predicted protein [Populus trichocarpa] gi|222861839|gb|EEE99381.1| predicted protein [Populus trichocarpa] gi|222870324|gb|EEF07455.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/253 (96%), Positives = 249/253 (98%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           ECQKPDLLATSSDFLRVWRI+DE  RVELKSLLNGNKNSE+CGPLTSFDWNEAEPRRIGT
Sbjct: 94  ECQKPDLLATSSDFLRVWRINDEQPRVELKSLLNGNKNSEFCGPLTSFDWNEAEPRRIGT 153

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIE+E VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 154 SSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 213

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH ASVNA+
Sbjct: 214 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHHASVNAV 273

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 274 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 333

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 334 AIAFSTKLQILRV 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22324803|gb|AAM95643.1| WD-repeat protein GhTTG2 [Gossypium hirsutum] gi|22324805|gb|AAM95644.1| WD-repeat protein GhTTG2 [Gossypium hirsutum]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/253 (96%), Positives = 249/253 (98%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           ECQKPDLLATSSDFLR+WRISD+  RV+LKSLLNGNKNSE+CGPLTSFDWNEAEP+RIGT
Sbjct: 94  ECQKPDLLATSSDFLRIWRISDDHSRVDLKSLLNGNKNSEFCGPLTSFDWNEAEPKRIGT 153

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIERE VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 154 SSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 213

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI
Sbjct: 214 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 273

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSM QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 274 AWAPHSSCHICTAGDDSQALIWDLSSMSQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 333

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 334 AIAFSTKLQILRV 346

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455770|ref|XP_004145624.1| PREDICTED: WD repeat-containing protein LWD1-like [Cucumis sativus] gi|449501305|ref|XP_004161333.1| PREDICTED: WD repeat-containing protein LWD1-like [Cucumis sativus]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/253 (96%), Positives = 249/253 (98%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           ECQ+PDLLATSSDFLRVWRISD+   VELKSLLNGNKNSE+CGPLTSFDWN+AEP+RIGT
Sbjct: 94  ECQRPDLLATSSDFLRVWRISDDPSSVELKSLLNGNKNSEFCGPLTSFDWNDAEPKRIGT 153

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIERE VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 154 SSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 213

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI
Sbjct: 214 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 273

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 274 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 333

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 334 AIAFSTKLQILRV 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13346196|gb|AAK19620.1|AF336287_1 WD1521 [Gossypium hirsutum]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/253 (96%), Positives = 248/253 (98%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           ECQKPDLLATSSDFLR+WRISD+  RV+LKSLLNGNKNSE+CGPLTSFDWNEAEP+RIGT
Sbjct: 62  ECQKPDLLATSSDFLRIWRISDDHSRVDLKSLLNGNKNSEFCGPLTSFDWNEAEPKRIGT 121

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIERE VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 122 SSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 181

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL VVELQRHQASVNAI
Sbjct: 182 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLTVVELQRHQASVNAI 241

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSM QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 242 AWAPHSSCHICTAGDDSQALIWDLSSMSQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 301

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 302 AIAFSTKLQILRV 314

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22324809|gb|AAM95646.1| WD-repeat protein GhTTG4 [Gossypium hirsutum]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/253 (94%), Positives = 249/253 (98%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           +CQKPDLLATSSDFLR+WRISD+  RV+LKSLLNGNKNSE+CGPLTSFDWNEAEP+RIGT
Sbjct: 94  DCQKPDLLATSSDFLRIWRISDDGSRVDLKSLLNGNKNSEFCGPLTSFDWNEAEPKRIGT 153

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIE+E VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 154 SSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 213

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPD PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL+RHQASVNA+
Sbjct: 214 IIYESSEPDAPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELRRHQASVNAV 273

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSMGQPV+GGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 274 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVKGGLDPILAYTAGAEIEQLQWSSSQPDWV 333

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 334 AIAFSTKLQILRV 346

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543451|ref|XP_002512788.1| WD-repeat protein, putative [Ricinus communis] gi|223547799|gb|EEF49291.1| WD-repeat protein, putative [Ricinus communis]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/253 (94%), Positives = 247/253 (97%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           ECQK DLLATSSDFLRVWRI ++  RVELKS+LNGNK+SE+CGPLTSFDWNEAEP+RIGT
Sbjct: 94  ECQKADLLATSSDFLRVWRIDNDHSRVELKSVLNGNKSSEFCGPLTSFDWNEAEPKRIGT 153

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIERE VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 154 SSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 213

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMD+AKVVVLDIRFPTLPVVELQRH ASVNAI
Sbjct: 214 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDTAKVVVLDIRFPTLPVVELQRHHASVNAI 273

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 274 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 333

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 334 AIAFSTKLQILRV 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451689|ref|XP_002278469.1| PREDICTED: WD repeat-containing protein LWD1 isoform 1 [Vitis vinifera] gi|359488412|ref|XP_003633757.1| PREDICTED: WD repeat-containing protein LWD1 isoform 2 [Vitis vinifera] gi|113707436|gb|ABF66626.2| WD repeat 2 [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/253 (95%), Positives = 248/253 (98%), Gaps = 2/253 (0%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           +CQKPDLLATSSDFLRVW ISD+  RVELK LLNGN+NSE+CGPLTSFDWNEAEP+RIGT
Sbjct: 94  DCQKPDLLATSSDFLRVWNISDD--RVELKCLLNGNRNSEFCGPLTSFDWNEAEPKRIGT 151

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIERE VDTQLIAHDKEV+DIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 152 SSIDTTCTIWDIERETVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHST 211

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI
Sbjct: 212 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 271

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 272 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 331

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 332 AIAFSTKLQILRV 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508531|ref|XP_003624554.1| WD repeat protein [Medicago truncatula] gi|355499569|gb|AES80772.1| WD repeat protein [Medicago truncatula]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/258 (94%), Positives = 249/258 (96%), Gaps = 6/258 (2%)

Query: 1   ECQKPDLLATSSDFLRVWRISDED------RRVELKSLLNGNKNSEYCGPLTSFDWNEAE 54
           +CQ+PDLLATSSDFLR+WRISD D      R VELK+LLNGNKNSEYCGP+TSFDWNEAE
Sbjct: 94  DCQRPDLLATSSDFLRIWRISDSDESASDSRAVELKTLLNGNKNSEYCGPITSFDWNEAE 153

Query: 55  PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLR 114
           PRRIGTSSIDTTCTIWDIE+E VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLR
Sbjct: 154 PRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLR 213

Query: 115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ 174
           DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ
Sbjct: 214 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ 273

Query: 175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 234
           ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS
Sbjct: 274 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS 333

Query: 235 SQPDWVAIAFSTKLQILR 252
           SQPDWVAIAFSTKLQILR
Sbjct: 334 SQPDWVAIAFSTKLQILR 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561070|ref|XP_003548808.1| PREDICTED: WD repeat-containing protein LWD1-like [Glycine max]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/253 (95%), Positives = 246/253 (97%), Gaps = 2/253 (0%)

Query: 1   ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
           +C +PDLLATSSDFLRVW IS+    VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT
Sbjct: 94  DCHRPDLLATSSDFLRVWHISES--AVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 151

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
           SSIDTTCTIWDIE+E VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct: 152 SSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 211

Query: 121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
           IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI
Sbjct: 212 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 271

Query: 181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
           AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct: 272 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 331

Query: 241 AIAFSTKLQILRV 253
           AIAFSTKLQILRV
Sbjct: 332 AIAFSTKLQILRV 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2010356	346	ATAN11 "AT1G12910" [Arabidopsi	1.0	0.731	0.944	5.2e-129
TAIR|locus:2090792	346	LWD2 "AT3G26640" [Arabidopsis	1.0	0.731	0.893	1.5e-122
TAIR|locus:2153914	341	TTG1 "AT5G24520" [Arabidopsis	0.972	0.721	0.709	5.2e-97
DICTYBASE|DDB_G0275925	325	wdr68 "WD40 repeat-containing	0.968	0.753	0.637	3.4e-84
ZFIN|ZDB-GENE-030131-9511	342	dcaf7 "ddb1 and cul4 associate	0.960	0.710	0.609	7.4e-82
UNIPROTKB|Q5ZIT1	342	DCAF7 "Uncharacterized protein	0.960	0.710	0.609	3.2e-81
UNIPROTKB|Q32L87	342	WDR68 "WD repeat domain 68" [B	0.960	0.710	0.609	3.2e-81
UNIPROTKB|E2REP1	342	DCAF7 "Uncharacterized protein	0.960	0.710	0.609	3.2e-81
UNIPROTKB|P61962	342	DCAF7 "DDB1- and CUL4-associat	0.960	0.710	0.609	3.2e-81
UNIPROTKB|F2Z564	342	DCAF7 "Uncharacterized protein	0.960	0.710	0.609	3.2e-81

TAIR|locus:2010356 ATAN11 "AT1G12910" [Arabidopsis thaliana (taxid:3702)]

 Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
 Identities = 239/253 (94%), Positives = 246/253 (97%)

Query:     1 ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
             ECQ+PDLLATSSDFLR+WRI+D+  RVELKS LN NKNSE+CGPLTSFDWNEAEPRRIGT
Sbjct:    94 ECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGT 153

Query:    61 SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
             SS DTTCTIWDIEREAVDTQLIAHDKEV+DIAWGGVGVFASVSADGSVRVFDLRDKEHST
Sbjct:   154 SSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHST 213

Query:   121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
             IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP LPVVELQRHQASVNAI
Sbjct:   214 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPALPVVELQRHQASVNAI 273

Query:   181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
             AWAPHSSCHICTAGDDSQALIWD+SSMGQ VEGGLDPILAYTAGAEIEQLQWSSSQPDWV
Sbjct:   274 AWAPHSSCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 333

Query:   241 AIAFSTKLQILRV 253
             AIAFSTKLQILRV
Sbjct:   334 AIAFSTKLQILRV 346

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=NAS

GO:0043153 "entrainment of circadian clock by photoperiod" evidence=IEP

GO:0048573 "photoperiodism, flowering" evidence=RCA;IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2090792 LWD2 "AT3G26640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 226/253 (89%), Positives = 239/253 (94%)

Query:     1 ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
             ECQ+PDLLATSSDFLR+WRISD++ RVELKS L+ +KNSE+ GP+TSFDWNEAEPRRIGT
Sbjct:    94 ECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGT 153

Query:    61 SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHST 120
             SSIDTTCTIWDIERE VDTQLIAHDKEVYDIAWGGVGVFASVS DGSVRVFDLRDKEHST
Sbjct:   154 SSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHST 213

Query:   121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI 180
             IIYES EP TPLVRL WNKQDPRYMAT+IM SAK+VVLDIRFP LPVVELQRHQASVNAI
Sbjct:   214 IIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFPALPVVELQRHQASVNAI 273

Query:   181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV 240
             AWAPHSS HIC+AGDDSQALIWD+SSMGQ VEGGLDPILAYTAGAE+EQLQWSSSQPDWV
Sbjct:   274 AWAPHSSSHICSAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEVEQLQWSSSQPDWV 333

Query:   241 AIAFSTKLQILRV 253
             AIAFS KLQILRV
Sbjct:   334 AIAFSNKLQILRV 346

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0043153 "entrainment of circadian clock by photoperiod" evidence=IEP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2153914 TTG1 "AT5G24520" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 176/248 (70%), Positives = 210/248 (84%)

Query:     6 DLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 65
             DLLA+S DFLR+W I+++   VE  S+LN +K SE+C PLTSFDWN+ EP+R+GT SIDT
Sbjct:    96 DLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDT 155

Query:    66 TCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES 125
             TCTIWDIE+  V+TQLIAHDKEV+DIAWG   VFASVSADGSVR+FDLRDKEHSTIIYES
Sbjct:   156 TCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYES 215

Query:   126 SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH 185
              +PDTPL+RL WNKQD RYMATI+MDS KVV+LDIR PT+PV EL+RHQASVNAIAWAP 
Sbjct:   216 PQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQ 275

Query:   186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS 245
             S  HIC+ GDD+QALIW+L ++  P   G+DP+  Y+AG+EI QLQWSSSQPDW+ IAF+
Sbjct:   276 SCKHICSGGDDTQALIWELPTVAGP--NGIDPMSVYSAGSEINQLQWSSSQPDWIGIAFA 333

Query:   246 TKLQILRV 253
              K+Q+LRV
Sbjct:   334 NKMQLLRV 341

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0010026 "trichome differentiation" evidence=IMP

GO:0045165 "cell fate commitment" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=RCA;IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0009957 "epidermal cell fate specification" evidence=IMP

DICTYBASE|DDB_G0275925 wdr68 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 160/251 (63%), Positives = 195/251 (77%)

Query:     4 KPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI 63
             +PDLLAT+ D+LR+W +    R ++LKSLL  N  SE+C PL+SFDWNE +P  + TSSI
Sbjct:    80 RPDLLATTGDYLRLWEVGSNQRSIKLKSLLT-NVISEFCAPLSSFDWNETDPSLLATSSI 138

Query:    64 DTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII 122
             DTTCTIW+IE     TQLIAHDKEV+DIA+  G  +FASV ADGS+R+FDLR+ EHSTII
Sbjct:   139 DTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASVGADGSLRMFDLRNLEHSTII 198

Query:   123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAW 182
             YE+     PL+RL WNKQDP Y+ATI  DS KV++LDIR P++P  EL  H+++VN I+W
Sbjct:   199 YETPS-FVPLLRLCWNKQDPNYLATIQQDSPKVIILDIRVPSVPAAELVFHKSAVNGISW 257

Query:   183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI 242
             APHSSCHICT  DD QALIWDLSSM +P+E   DP+L Y A AEI QL WSSSQPDW+AI
Sbjct:   258 APHSSCHICTVSDDKQALIWDLSSMPKPIE---DPLLTYNALAEINQLSWSSSQPDWIAI 314

Query:   243 AFSTKLQILRV 253
             AFS+ LQIL+V
Sbjct:   315 AFSSHLQILKV 325

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030131-9511 dcaf7 "ddb1 and cul4 associated factor 7" [Danio rerio (taxid:7955)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 161/264 (60%), Positives = 193/264 (73%)

Query:     5 PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID 64
             PDLLATS D+LR+WR++D + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSID
Sbjct:    85 PDLLATSGDYLRIWRVNDTETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPNLLGTSSID 142

Query:    65 TTCTIWDIEREAV-----------DTQLIAHDKEVYDIAW----GGVGVFASVSADGSVR 109
             TTCTIW +E   V            TQLIAHDKEVYDIA+    GG  +FASV ADGSVR
Sbjct:   143 TTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVR 202

Query:   110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
             +FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+ MD  +VV+LD+R P  PV  
Sbjct:   203 MFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVAR 261

Query:   170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
             L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  
Sbjct:   262 LNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINN 318

Query:   230 LQWSSSQPDWVAIAFSTKLQILRV 253
             +QW+S+QPDW+AI ++  L+ILRV
Sbjct:   319 VQWASTQPDWIAICYNNCLEILRV 342

GO:0051216 "cartilage development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q5ZIT1 DCAF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 161/264 (60%), Positives = 192/264 (72%)

Query:     5 PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID 64
             PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSID
Sbjct:    85 PDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSID 142

Query:    65 TTCTIWDIEREAV-----------DTQLIAHDKEVYDIAW----GGVGVFASVSADGSVR 109
             TTCTIW +E   V            TQLIAHDKEVYDIA+    GG  +FASV ADGSVR
Sbjct:   143 TTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVR 202

Query:   110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
             +FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+ MD  +VV+LD+R P  PV  
Sbjct:   203 MFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVAR 261

Query:   170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
             L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  
Sbjct:   262 LNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINN 318

Query:   230 LQWSSSQPDWVAIAFSTKLQILRV 253
             +QW+S+QPDW+AI ++  L+ILRV
Sbjct:   319 VQWASTQPDWIAICYNNCLEILRV 342

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q32L87 WDR68 "WD repeat domain 68" [Bos taurus (taxid:9913)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 161/264 (60%), Positives = 192/264 (72%)

Query:     5 PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID 64
             PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSID
Sbjct:    85 PDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSID 142

Query:    65 TTCTIWDIEREAV-----------DTQLIAHDKEVYDIAW----GGVGVFASVSADGSVR 109
             TTCTIW +E   V            TQLIAHDKEVYDIA+    GG  +FASV ADGSVR
Sbjct:   143 TTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVR 202

Query:   110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
             +FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+ MD  +VV+LD+R P  PV  
Sbjct:   203 MFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVAR 261

Query:   170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
             L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  
Sbjct:   262 LNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINN 318

Query:   230 LQWSSSQPDWVAIAFSTKLQILRV 253
             +QW+S+QPDW+AI ++  L+ILRV
Sbjct:   319 VQWASTQPDWIAICYNNCLEILRV 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2REP1 DCAF7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 161/264 (60%), Positives = 192/264 (72%)

Query:     5 PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID 64
             PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSID
Sbjct:    85 PDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSID 142

Query:    65 TTCTIWDIEREAV-----------DTQLIAHDKEVYDIAW----GGVGVFASVSADGSVR 109
             TTCTIW +E   V            TQLIAHDKEVYDIA+    GG  +FASV ADGSVR
Sbjct:   143 TTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVR 202

Query:   110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
             +FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+ MD  +VV+LD+R P  PV  
Sbjct:   203 MFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVAR 261

Query:   170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
             L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  
Sbjct:   262 LNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINN 318

Query:   230 LQWSSSQPDWVAIAFSTKLQILRV 253
             +QW+S+QPDW+AI ++  L+ILRV
Sbjct:   319 VQWASTQPDWIAICYNNCLEILRV 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P61962 DCAF7 "DDB1- and CUL4-associated factor 7" [Homo sapiens (taxid:9606)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 161/264 (60%), Positives = 192/264 (72%)

Query:     5 PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID 64
             PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSID
Sbjct:    85 PDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSID 142

Query:    65 TTCTIWDIEREAV-----------DTQLIAHDKEVYDIAW----GGVGVFASVSADGSVR 109
             TTCTIW +E   V            TQLIAHDKEVYDIA+    GG  +FASV ADGSVR
Sbjct:   143 TTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVR 202

Query:   110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
             +FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+ MD  +VV+LD+R P  PV  
Sbjct:   203 MFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVAR 261

Query:   170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
             L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  
Sbjct:   262 LNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINN 318

Query:   230 LQWSSSQPDWVAIAFSTKLQILRV 253
             +QW+S+QPDW+AI ++  L+ILRV
Sbjct:   319 VQWASTQPDWIAICYNNCLEILRV 342

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z564 DCAF7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 161/264 (60%), Positives = 192/264 (72%)

Query:     5 PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID 64
             PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSID
Sbjct:    85 PDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSID 142

Query:    65 TTCTIWDIEREAV-----------DTQLIAHDKEVYDIAW----GGVGVFASVSADGSVR 109
             TTCTIW +E   V            TQLIAHDKEVYDIA+    GG  +FASV ADGSVR
Sbjct:   143 TTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVR 202

Query:   110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE 169
             +FDLR  EHSTIIYE  +   PL+RL WNKQDP Y+AT+ MD  +VV+LD+R P  PV  
Sbjct:   203 MFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVAR 261

Query:   170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
             L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  
Sbjct:   262 LNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINN 318

Query:   230 LQWSSSQPDWVAIAFSTKLQILRV 253
             +QW+S+QPDW+AI ++  L+ILRV
Sbjct:   319 VQWASTQPDWIAICYNNCLEILRV 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LPV9	LWD1_ARATH	No assigned EC number	0.9446	1.0	0.7312	yes	no
Q552R1	DCAF7_DICDI	No assigned EC number	0.6349	0.9723	0.7569	yes	no
P61962	DCAF7_HUMAN	No assigned EC number	0.6098	0.9604	0.7105	yes	no
P61963	DCAF7_MOUSE	No assigned EC number	0.6098	0.9604	0.7105	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	7e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 20/204 (9%)

Query: 3   QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT 60
               +L++SS    ++VW +       +  + L G+ +       +           + +
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDG------TFVAS 152

Query: 61  SSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEHS 119
           SS D T  +WD+        L  H  EV  +A+   G    S S+DG+++++DL   +  
Sbjct: 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212

Query: 120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNA 179
             +         +  + ++  D   +A+   D   + V D+R     V  L  H  SV +
Sbjct: 213 GTLRGHENG---VNSVAFS-PDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHTNSVTS 266

Query: 180 IAWAPHSSCHICTAGDDSQALIWD 203
           +AW+P     + +   D    IWD
Sbjct: 267 LAWSP-DGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 43  GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFAS 101
           G +T   ++  + + + T S D T  +WD+E   +   L  H   V D+A    G   AS
Sbjct: 10  GGVTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 102 VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR 161
            S+D ++R++DL   E               V       D R +++   D   + V D+ 
Sbjct: 69  GSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAF---SPDGRILSSSSRDK-TIKVWDVE 123

Query: 162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207
                +  L+ H   VN++A++P  +  + ++  D    +WDL + 
Sbjct: 124 TGKC-LTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTG 167

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 20/205 (9%)

Query: 5   PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
             LLAT S    ++VW +       EL   L G+      GP+     + A+   + + S
Sbjct: 21  GKLLATGSGDGTIKVWDLETG----ELLRTLKGHT-----GPVRDVAAS-ADGTYLASGS 70

Query: 63  IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEHSTI 121
            D T  +WD+E       L  H   V  +A+   G + +S S D +++V+D+   +    
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLT 129

Query: 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIA 181
                      V       D  ++A+   D   + + D+R     V  L  H   VN++A
Sbjct: 130 TLRGHTDWVNSVAFS---PDGTFVASSSQDG-TIKLWDLRTGKC-VATLTGHTGEVNSVA 184

Query: 182 WAPHSSCHICTAGDDSQALIWDLSS 206
           ++P     + ++  D    +WDLS+
Sbjct: 185 FSP-DGEKLLSSSSDGTIKLWDLST 208

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 9/205 (4%)

Query: 8   LATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCG---PLTSFDWNEAEPRRIGTSSID 64
           LA S D   +   S  D  ++L  L  G   S   G   P++S  ++      I + S D
Sbjct: 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220

Query: 65  TTCTIWDIE-REAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIY 123
            T  +WD+   + + + L  H   V         + AS S+DG++R++DLR         
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280

Query: 124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-LQRHQASVNAIAW 182
                 + ++ + ++  D + +A+   D   V + D+    L     L+ H+  V+++++
Sbjct: 281 SG--HSSSVLSVAFSP-DGKLLASGSSDG-TVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336

Query: 183 APHSSCHICTAGDDSQALIWDLSSM 207
           +P  S  +    DD    +WDL + 
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTG 361

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 3/186 (1%)

Query: 23  EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82
           ++     ++     K SE    L S           G   +           +     L 
Sbjct: 3   DNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR 62

Query: 83  AHDKEVYDIAWGGVGVF-ASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141
            H+  +  IA+   G    S S+DG+++++DL + E      E       + +L  +  D
Sbjct: 63  GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS-SVSKLALSSPD 121

Query: 142 PRYMATIIMDS-AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL 200
              +          V + D+  P   +  L+ H  SV ++A++P        +  D    
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 201 IWDLSS 206
           +WDL +
Sbjct: 182 LWDLRT 187

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 12/210 (5%)

Query: 3   QKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS 62
               L   SS+   +      D  V L  L +      +   +TS  ++      + + S
Sbjct: 27  SLSLLSLGSSESGILLLALLSDSLVSLPDL-SSLLLRGHEDSITSIAFSPDGELLL-SGS 84

Query: 63  IDTTCTIWDIE--REAVDTQLIAHDKEVYDIAW----GGVGVFASVSADGSVRVFDLRDK 116
            D T  +WD++   + + +    HD  V  +A     G   + AS S DG+V+++DL   
Sbjct: 85  SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL--- 141

Query: 117 EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQAS 176
                +  + E  +  V       D + +A+       + + D+R    P+  L  H   
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDP 200

Query: 177 VNAIAWAPHSSCHICTAGDDSQALIWDLSS 206
           V+++A++P     I +   D    +WDLS+
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 16/187 (8%)

Query: 28  ELKSLLNGNKNSEYC-------GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ 80
           E +S++   ++  Y          L+   WN     ++ +S+ +    +WD+ R  + T+
Sbjct: 511 ECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE 570

Query: 81  LIAHDKEVY--DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWN 138
           +  H+K V+  D +     + AS S DGSV+++ +        I   +     +  + + 
Sbjct: 571 MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN----ICCVQFP 626

Query: 139 KQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ 198
            +  R +A    D  KV   D+R P LP+  +  H  +V+ + +   S+  + ++  D+ 
Sbjct: 627 SESGRSLAFGSADH-KVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST--LVSSSTDNT 683

Query: 199 ALIWDLS 205
             +WDLS
Sbjct: 684 LKLWDLS 690

Length = 793

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 42/210 (20%), Positives = 88/210 (41%), Gaps = 22/210 (10%)

Query: 7   LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT 65
           L + SSD  +R+W +      +           S +   + S  ++  + + + + S D 
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLL--------RTLSGHSSSVLSVAFSP-DGKLLASGSSDG 306

Query: 66  TCTIWDIE--REAVDTQLIAHDKEVYDIAWGGVG--VFASVSADGSVRVFDLRDKEHSTI 121
           T  +WD+E  +      L  H+  V  +++   G  + +  S DG++R++DLR  +    
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366

Query: 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIA 181
           +   S      V       D R +++   D   V + D+   +L +  L  H + V ++ 
Sbjct: 367 LEGHSN-----VLSVSFSPDGRVVSSGSTDGT-VRLWDLSTGSL-LRNLDGHTSRVTSLD 419

Query: 182 WAPHSSCHICTAGDDSQALIWDLSSMGQPV 211
           ++P     + +   D+   +WDL +  + V
Sbjct: 420 FSP-DGKSLASGSSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 6   DLLATSSDFL--RVWRISDEDRRV-ELKS---LLNGNKNSEYCGPLTSFDWNEAEPRRIG 59
           ++LA+ S+ L  RVW I   D  V E+K    +L G+K       ++  DWN      + 
Sbjct: 88  EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK-----ISIIDWNPMNYYIMC 142

Query: 60  TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGS-VRVFDLRDKE 117
           +S  D+   IWDIE E    Q+    K++  + W   G   S +  G  + + D R +E
Sbjct: 143 SSGFDSFVNIWDIENEKRAFQINM-PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
            +  L+ H   V ++A++P    ++ +  DD    +WD
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
            +  L+ H   V ++A++P  +  + +  DD    +WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 169 ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207
            L+ H   V  +A++P     + T   D    +WDL + 
Sbjct: 4   TLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETG 41

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0290	364	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.98
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.98
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG1188	376	consensus WD40 repeat protein [General function pr	99.92
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.91
KOG1188	376	consensus WD40 repeat protein [General function pr	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG1310	758	consensus WD40 repeat protein [General function pr	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG2096	420	consensus WD40 repeat protein [General function pr	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG4227	609	consensus WD40 repeat protein [General function pr	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.81
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.78
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
KOG2139	445	consensus WD40 repeat protein [General function pr	99.75
KOG2321	703	consensus WD40 repeat protein [General function pr	99.75
KOG2139	445	consensus WD40 repeat protein [General function pr	99.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.74
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.73
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
PRK05137	435	tolB translocation protein TolB; Provisional	99.69
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.64
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.62
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.61
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
KOG4547	541	consensus WD40 repeat-containing protein [General	99.57
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.55
KOG4547	541	consensus WD40 repeat-containing protein [General	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
PRK01029	428	tolB translocation protein TolB; Provisional	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
PRK04792	448	tolB translocation protein TolB; Provisional	99.48
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.47
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.45
KOG2315	566	consensus Predicted translation initiation factor	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.41
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.4
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.38
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.37
PRK00178	430	tolB translocation protein TolB; Provisional	99.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.34
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.33
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.31
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.3
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.3
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.29
PRK04792	448	tolB translocation protein TolB; Provisional	99.29
COG4946	668	Uncharacterized protein related to the periplasmic	99.28
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.27
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.25
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.25
COG4946	668	Uncharacterized protein related to the periplasmic	99.24
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.24
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.23
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.16
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.14
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.13
KOG2314	698	consensus Translation initiation factor 3, subunit	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.1
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.06
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.06
KOG2695	425	consensus WD40 repeat protein [General function pr	99.05
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.04
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
KOG2695	425	consensus WD40 repeat protein [General function pr	99.02
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.98
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.95
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.95
KOG2314	698	consensus Translation initiation factor 3, subunit	98.95
KOG2315	566	consensus Predicted translation initiation factor	98.94
PRK04043	419	tolB translocation protein TolB; Provisional	98.93
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.92
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.9
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.89
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.86
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.84
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.81
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.81
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.8
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.8
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.76
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.75
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.75
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.65
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.61
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.6
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.6
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.58
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.57
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.51
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.36
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.31
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.26
PRK02888	635	nitrous-oxide reductase; Validated	98.18
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.17
KOG3621	726	consensus WD40 repeat-containing protein [General	98.15
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.15
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.11
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.1
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.09
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.06
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.05
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.04
PRK02888	635	nitrous-oxide reductase; Validated	97.97
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.94
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.88
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.86
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.82
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.82
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.81
KOG2444	238	consensus WD40 repeat protein [General function pr	97.77
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.76
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.75
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.69
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.62
COG3391	381	Uncharacterized conserved protein [Function unknow	97.61
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.59
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.59
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.58
PHA02713	557	hypothetical protein; Provisional	97.49
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.46
PRK13616	591	lipoprotein LpqB; Provisional	97.44
COG3391	381	Uncharacterized conserved protein [Function unknow	97.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.41
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.4
KOG2395	644	consensus Protein involved in vacuole import and d	97.4
KOG2395	644	consensus Protein involved in vacuole import and d	97.38
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.35
COG5276	370	Uncharacterized conserved protein [Function unknow	97.26
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.22
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.21
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.16
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.11
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.08
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.05
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.03
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.03
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.01
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.93
KOG2444	238	consensus WD40 repeat protein [General function pr	96.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.87
PHA03098	534	kelch-like protein; Provisional	96.85
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.8
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.79
PHA02713	557	hypothetical protein; Provisional	96.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.73
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.73
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.72
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.7
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.7
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.53
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.52
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.44
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.38
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.38
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.37
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.24
PRK13616	591	lipoprotein LpqB; Provisional	96.18
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.14
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.11
PHA03098	534	kelch-like protein; Provisional	96.02
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.85
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.83
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.81
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.76
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.7
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.62
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.57
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.41
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.26
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.25
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.17
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.16
COG5276	370	Uncharacterized conserved protein [Function unknow	95.09
KOG2247	615	consensus WD40 repeat-containing protein [General	95.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.95
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.78
PHA02790	480	Kelch-like protein; Provisional	94.77
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.71
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.6
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.59
PHA02790	480	Kelch-like protein; Provisional	94.55
PRK13684	334	Ycf48-like protein; Provisional	94.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.41
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.33
COG5167	776	VID27 Protein involved in vacuole import and degra	94.27
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.24
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.2
COG5167	776	VID27 Protein involved in vacuole import and degra	93.58
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.55
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	93.45
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.29
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.2
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.91
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.54
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.45
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.34
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.33
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.05
KOG2247	615	consensus WD40 repeat-containing protein [General	91.98
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.95
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.89
PRK10115	686	protease 2; Provisional	91.48
COG4590	733	ABC-type uncharacterized transport system, permeas	91.38
COG4590	733	ABC-type uncharacterized transport system, permeas	91.32
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.79
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.7
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.64
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.59
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.54
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.35
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.21
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.74
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	89.61
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.39
PLN02193	470	nitrile-specifier protein	89.08
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.07
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.61
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.93
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.89
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.57
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.15
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.05
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.72
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	86.35
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	86.16
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.8
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.51
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.07
PLN02153	341	epithiospecifier protein	85.02
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.8
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	84.29
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.9
PLN02153	341	epithiospecifier protein	83.83
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.48
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	83.32
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	82.22
PF13449	326	Phytase-like: Esterase-like activity of phytase	81.37
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	81.12
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	80.97
PLN02193	470	nitrile-specifier protein	80.48
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	80.36

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-44  Score=265.92  Aligned_cols=230  Identities=23%  Similarity=0.367  Sum_probs=200.0

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV-   77 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-   77 (253)
                      +| ++..||+|+ | ++|+||+++.    .+..+.++|.     .-|.|++|+ |++..||+|+.||.|++||.+++++ 
T Consensus       124 sp-~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~-----~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~~  192 (480)
T KOG0271|consen  124 SP-TGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHK-----NWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQI  192 (480)
T ss_pred             cC-CCceEEecCCCceEEeeccCCC----CcceeecCCc-----cEEEEEEEC-CCcchhhccccCCeEEEecCCCCCcc
Confidence            35 788899988 4 9999999997    8899999999     899999999 9999999999999999999998874 


Q ss_pred             eeeeecccccEEEEEec------CCCeEEEEeCCCcEEEEEcCCCCCeee------------------------------
Q 035558           78 DTQLIAHDKEVYDIAWG------GVGVFASVSADGSVRVFDLRDKEHSTI------------------------------  121 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------------  121 (253)
                      ...+++|...|++++|.      ..++|++++.||.++|||+..+.+...                              
T Consensus       193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkv  272 (480)
T KOG0271|consen  193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKV  272 (480)
T ss_pred             cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEE
Confidence            56788999999999996      456888888888888888755331100                              


Q ss_pred             --------------------------------------------------------------------------------
Q 035558          122 --------------------------------------------------------------------------------  121 (253)
Q Consensus       122 --------------------------------------------------------------------------------  121 (253)
                                                                                                      
T Consensus       273 w~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~  352 (480)
T KOG0271|consen  273 WRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWN  352 (480)
T ss_pred             EEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEec
Confidence                                                                                            


Q ss_pred             -------eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec
Q 035558          122 -------IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       122 -------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                             +....+|..-|+.+.|+| +++++|+++.|.. |++||.++++. +..+++|-.+|+.++|+.|. ++|++||
T Consensus       353 p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkS-VkLW~g~tGk~-lasfRGHv~~VYqvawsaDs-RLlVS~S  428 (480)
T KOG0271|consen  353 PFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKS-VKLWDGRTGKF-LASFRGHVAAVYQVAWSADS-RLLVSGS  428 (480)
T ss_pred             ccccccchhhhhchhhheeeEEECC-CccEEEEeecccc-eeeeeCCCcch-hhhhhhccceeEEEEeccCc-cEEEEcC
Confidence                   001122455688999999 9999999999999 99999999875 89999999999999999998 7999999


Q ss_pred             CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          195 DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       195 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .|.++++||+++.+...       .+.+|...|.++.|+|+|+.+++++.|..+++|+
T Consensus       429 kDsTLKvw~V~tkKl~~-------DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  429 KDSTLKVWDVRTKKLKQ-------DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCceEEEEEeeeeeecc-------cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999977554       7889999999999999999999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-44  Score=269.24  Aligned_cols=227  Identities=21%  Similarity=0.331  Sum_probs=208.7

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      .++..||||+ + .+++|+....    ..+.++.+|.     ..|.++.|+|. ++..+++|+.||++++|++.+..++.
T Consensus       185 ~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~-----~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~  255 (459)
T KOG0272|consen  185 RDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHT-----SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ  255 (459)
T ss_pred             cCCCeEEEeecCCceeEeecCCc----ceeEEEeccc-----cceeeEEEccCCCccceeeeccCCceeeeccCCCcchh
Confidence            4678899998 5 9999999987    8899999999     89999999976 47789999999999999999999999


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      .+.+|...|..++|+ +|++|+|++.|.+-++||++++..   +....+|...|.+++|+| +|.++++|+.|.. -+||
T Consensus       256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~-~RvW  330 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFSIAFQP-DGSLAATGGLDSL-GRVW  330 (459)
T ss_pred             hhhcchhhheeeeecCCCceeeecccccchhhcccccchh---hHhhcccccccceeEecC-CCceeeccCccch-hhee
Confidence            999999999999999 999999999999999999999873   444467888999999999 9999999999998 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCC
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQP  237 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~  237 (253)
                      |+|++.. +..+.+|..+|.+|+|+|+| +.|+|||.|++++|||++..+...       ...+|.+-|+.|.|+| .|.
T Consensus       331 DlRtgr~-im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly-------~ipAH~nlVS~Vk~~p~~g~  401 (459)
T KOG0272|consen  331 DLRTGRC-IMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELY-------TIPAHSNLVSQVKYSPQEGY  401 (459)
T ss_pred             ecccCcE-EEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccce-------ecccccchhhheEecccCCe
Confidence            9999875 89999999999999999999 799999999999999999887654       7889999999999999 566


Q ss_pred             ceEEEEcCCcEEEEE
Q 035558          238 DWVAIAFSTKLQILR  252 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~  252 (253)
                      +|++++.|+.++||.
T Consensus       402 fL~TasyD~t~kiWs  416 (459)
T KOG0272|consen  402 FLVTASYDNTVKIWS  416 (459)
T ss_pred             EEEEcccCcceeeec
Confidence            777999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-44  Score=268.49  Aligned_cols=228  Identities=21%  Similarity=0.323  Sum_probs=210.2

Q ss_pred             CC-CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            2 CQ-KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         2 p~-~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      |. ++.-+|+|+ | ++++|++++.    .++..+.+|.     ..|..++|+ |+|++|++++.|.+-++||++++..+
T Consensus       227 P~~~~~~lat~s~Dgtvklw~~~~e----~~l~~l~gH~-----~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~El  296 (459)
T KOG0272|consen  227 PVDSDLNLATASADGTVKLWKLSQE----TPLQDLEGHL-----ARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSEL  296 (459)
T ss_pred             cCCCccceeeeccCCceeeeccCCC----cchhhhhcch-----hhheeeeec-CCCceeeecccccchhhcccccchhh
Confidence            55 466788887 6 9999999997    8899999999     899999999 89999999999999999999999988


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ....+|...|.+++|+ +|.++++|+.|..-++||++++.++..+   .+|..+|.+++|+| +|..+|+|+.|+. ++|
T Consensus       297 L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L---~gH~k~I~~V~fsP-NGy~lATgs~Dnt-~kV  371 (459)
T KOG0272|consen  297 LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL---AGHIKEILSVAFSP-NGYHLATGSSDNT-CKV  371 (459)
T ss_pred             HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe---cccccceeeEeECC-CceEEeecCCCCc-EEE
Confidence            8889999999999999 9999999999999999999999854443   45777999999999 9999999999999 999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ||++.... +..+.+|..-|+.++|+|+.+++|+|++.|++++||..++.....       .+.+|.+.|.++..+++++
T Consensus       372 WDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k-------sLaGHe~kV~s~Dis~d~~  443 (459)
T KOG0272|consen  372 WDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK-------SLAGHEGKVISLDISPDSQ  443 (459)
T ss_pred             eeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch-------hhcCCccceEEEEeccCCc
Confidence            99998665 999999999999999999665899999999999999999887654       8889999999999999999


Q ss_pred             ceEEEEcCCcEEEEE
Q 035558          238 DWVAIAFSTKLQILR  252 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~  252 (253)
                      .+++++.|.++++|.
T Consensus       444 ~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  444 AIATSSFDRTIKLWR  458 (459)
T ss_pred             eEEEeccCceeeecc
Confidence            999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.6e-40  Score=232.17  Aligned_cols=231  Identities=17%  Similarity=0.240  Sum_probs=201.9

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +++..||+++. .||+||++++  ...++.++.+|.     ..|+++.|. .+++++++|++||+++|||++...+.+.+
T Consensus        50 pdk~~LAaa~~qhvRlyD~~S~--np~Pv~t~e~h~-----kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~  121 (311)
T KOG0315|consen   50 PDKKDLAAAGNQHVRLYDLNSN--NPNPVATFEGHT-----KNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNY  121 (311)
T ss_pred             CCcchhhhccCCeeEEEEccCC--CCCceeEEeccC-----CceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhc
Confidence            56778888888 9999999984  345899999998     789999999 99999999999999999999986666655


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      + |..+|+++..+ +...|++|..+|.|++||+....+...+..  .....|.++...| ++.+++.+...|+ .++|++
T Consensus       122 ~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP--e~~~~i~sl~v~~-dgsml~a~nnkG~-cyvW~l  196 (311)
T KOG0315|consen  122 Q-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP--EDDTSIQSLTVMP-DGSMLAAANNKGN-CYVWRL  196 (311)
T ss_pred             c-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC--CCCcceeeEEEcC-CCcEEEEecCCcc-EEEEEc
Confidence            5 78999999999 889999999999999999998865444333  3335899999999 9999999999998 999998


Q ss_pred             CCCC-----CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          161 RFPT-----LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       161 ~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      -...     +|+..++.|+..+..+.++|++ ++|+++|.|.+++||+.+..-+..      ..+.+|...+...+||.+
T Consensus       197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kle------~~l~gh~rWvWdc~FS~d  269 (311)
T KOG0315|consen  197 LNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKLE------LVLTGHQRWVWDCAFSAD  269 (311)
T ss_pred             cCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCceeeE------EEeecCCceEEeeeeccC
Confidence            6533     4678899999999999999999 799999999999999999873222      577889999999999999


Q ss_pred             CCceEEEEcCCcEEEEEC
Q 035558          236 QPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw~l  253 (253)
                      ++++++++.|+.+++|++
T Consensus       270 g~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  270 GEYLVTASSDHTARLWDL  287 (311)
T ss_pred             ccEEEecCCCCceeeccc
Confidence            999999999999999986

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-39  Score=231.24  Aligned_cols=232  Identities=19%  Similarity=0.341  Sum_probs=201.0

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCcccc-ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRV-ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      |.+.+++.+++ | ++.+|++...+..+ .+++.++||.     ..|..+..+ +++++.++++.|+++++||+.+++..
T Consensus        25 ~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~~t   98 (315)
T KOG0279|consen   25 IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLS-SDGNFALSASWDGTLRLWDLATGEST   98 (315)
T ss_pred             cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc-----eEecceEEc-cCCceEEeccccceEEEEEecCCcEE
Confidence            45677888888 4 99999997642222 5678899998     789999999 99999999999999999999999999


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVV  156 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~  156 (253)
                      +.|.+|...|.+++|+ +.+.+++|+.|.+|++|+....... .+... .+...|.|+.|+|+. ..+|++++.|+. |+
T Consensus        99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~-~~~~WVscvrfsP~~~~p~Ivs~s~Dkt-vK  175 (315)
T KOG0279|consen   99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHED-SHREWVSCVRFSPNESNPIIVSASWDKT-VK  175 (315)
T ss_pred             EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecC-CCcCcEEEEEEcCCCCCcEEEEccCCce-EE
Confidence            9999999999999999 9999999999999999999876522 22222 225699999999954 678889999998 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      +||+++.+. ...+.+|.+.++.++++||| .++++|+.||.+.+||++.++.        ....+|...|.+++|+|+.
T Consensus       176 vWnl~~~~l-~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~--------lysl~a~~~v~sl~fspnr  245 (315)
T KOG0279|consen  176 VWNLRNCQL-RTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN--------LYSLEAFDIVNSLCFSPNR  245 (315)
T ss_pred             EEccCCcch-hhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce--------eEeccCCCeEeeEEecCCc
Confidence            999998764 78889999999999999999 5999999999999999999875        3667899999999999986


Q ss_pred             CceEEEEcCCcEEEEEC
Q 035558          237 PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~~~~~i~vw~l  253 (253)
                       ++++.+.+..|+||++
T Consensus       246 -ywL~~at~~sIkIwdl  261 (315)
T KOG0279|consen  246 -YWLCAATATSIKIWDL  261 (315)
T ss_pred             -eeEeeccCCceEEEec
Confidence             6888888889999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.7e-40  Score=263.97  Aligned_cols=231  Identities=19%  Similarity=0.292  Sum_probs=204.9

Q ss_pred             CCCceEEeec-C-cEEEEEccCC---------------------------ccccceeeeecCCCCccccCCeeEEEecCC
Q 035558            3 QKPDLLATSS-D-FLRVWRISDE---------------------------DRRVELKSLLNGNKNSEYCGPLTSFDWNEA   53 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   53 (253)
                      +++.+||.|- + .|++|.+...                           .......+++.+|.     ++|..++|+ |
T Consensus       388 ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~-----GPVyg~sFs-P  461 (707)
T KOG0263|consen  388 DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS-----GPVYGCSFS-P  461 (707)
T ss_pred             CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC-----Cceeeeeec-c
Confidence            4556777776 5 9999998731                           01122345577888     999999999 8


Q ss_pred             CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558           54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL  132 (253)
Q Consensus        54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i  132 (253)
                      +.++|++++.|+++|+|.+.+..++-.+++|..||+++.|+ .|-+|||++.|++-++|......+   .....+|...|
T Consensus       462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P---lRifaghlsDV  538 (707)
T KOG0263|consen  462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP---LRIFAGHLSDV  538 (707)
T ss_pred             cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc---hhhhccccccc
Confidence            99999999999999999999999999999999999999999 999999999999999999988764   33445777799


Q ss_pred             eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC
Q 035558          133 VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE  212 (253)
Q Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  212 (253)
                      .|+.|+| +.+++++|+.|.. |++||..++.. +..|.+|.++|.+++|+|+| ++|++|+.||.|.+||+.++.... 
T Consensus       539 ~cv~FHP-Ns~Y~aTGSsD~t-VRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~-  613 (707)
T KOG0263|consen  539 DCVSFHP-NSNYVATGSSDRT-VRLWDVSTGNS-VRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLVK-  613 (707)
T ss_pred             ceEEECC-cccccccCCCCce-EEEEEcCCCcE-EEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcchh-
Confidence            9999999 9999999999988 99999999775 99999999999999999999 799999999999999999987654 


Q ss_pred             CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          213 GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                            .+.+|.+.|.++.|+.+|..|++++.|+.|++|++
T Consensus       614 ------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  614 ------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             ------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence                  78899999999999999999999999999999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=2.6e-38  Score=237.47  Aligned_cols=245  Identities=24%  Similarity=0.417  Sum_probs=204.6

Q ss_pred             CCCCceEEeecC--cEEEEEccCCcc------ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDR------RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE   73 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~   73 (253)
                      |++..++|+.+.  .|.|||......      ...+...+.+|+     ..-++++|++.....|++|+.|+.|++||+.
T Consensus       134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~-----~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~  208 (422)
T KOG0264|consen  134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE-----KEGYGLSWNRQQEGTLLSGSDDHTICLWDIN  208 (422)
T ss_pred             CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----ccccccccccccceeEeeccCCCcEEEEecc
Confidence            899999998875  999999876422      223344788998     4566899998778899999999999999997


Q ss_pred             Cce-------eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCE
Q 035558           74 REA-------VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRY  144 (253)
Q Consensus        74 ~~~-------~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  144 (253)
                      ...       ....+.+|...|.+++|+  +..+|++++.|+.+.|||+|++ ..........|.+.+.|++|+|.++.+
T Consensus       209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~i  287 (422)
T KOG0264|consen  209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFI  287 (422)
T ss_pred             ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCce
Confidence            543       345677999999999999  8899999999999999999974 333444556788899999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC----CCCCC---
Q 035558          145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE----GGLDP---  217 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~---  217 (253)
                      ||+|+.|++ |.+||+|+...++..+.+|...|.++.|+|.....|++++.|+.+.|||+..-.....    ....|   
T Consensus       288 lAT~S~D~t-V~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll  366 (422)
T KOG0264|consen  288 LATGSADKT-VALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL  366 (422)
T ss_pred             EEeccCCCc-EEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee
Confidence            999999999 9999999999999999999999999999999888999999999999999987553320    11112   


Q ss_pred             eeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          218 ILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       218 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      ..-.||...|..+.|+|..+..+ +++.|+.++||++
T Consensus       367 F~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  367 FIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             EEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence            23347899999999999998766 6888999999986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-39  Score=236.75  Aligned_cols=209  Identities=25%  Similarity=0.334  Sum_probs=180.9

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG  106 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg  106 (253)
                      ++...+.+|.     ++|.|+.|+ |++..|++|+.|.++|+||+.+..+..+.++|...|.+++|+ |+..||+|+.||
T Consensus       106 rCssS~~GH~-----e~Vl~~~fs-p~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg  179 (480)
T KOG0271|consen  106 RCSSSIAGHG-----EAVLSVQFS-PTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG  179 (480)
T ss_pred             eeccccCCCC-----CcEEEEEec-CCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence            5566788898     899999999 699999999999999999999999999999999999999999 999999999999


Q ss_pred             cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC----CCCEEEEEEeCCCeEEEEECCCCCC-----------------
Q 035558          107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ----DPRYMATIIMDSAKVVVLDIRFPTL-----------------  165 (253)
Q Consensus       107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~~i~~~d~~~~~~-----------------  165 (253)
                      +|++||.+++++  ......+|...|++++|.|.    ..+++|+++.||. ++|||+.....                 
T Consensus       180 ~I~lwdpktg~~--~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~-vrIWd~~~~~~~~~lsgHT~~VTCvrwG  256 (480)
T KOG0271|consen  180 SIRLWDPKTGQQ--IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS-VRIWDTKLGTCVRTLSGHTASVTCVRWG  256 (480)
T ss_pred             eEEEecCCCCCc--ccccccCcccceeEEeecccccCCCccceecccCCCC-EEEEEccCceEEEEeccCccceEEEEEc
Confidence            999999998873  34445677778888888762    3456777777777 77777643211                 


Q ss_pred             --------------------------------------------------------------------------------
Q 035558          166 --------------------------------------------------------------------------------  165 (253)
Q Consensus       166 --------------------------------------------------------------------------------  165 (253)
                                                                                                      
T Consensus       257 G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  257 GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence                                                                                            


Q ss_pred             ----------------------CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558          166 ----------------------PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA  223 (253)
Q Consensus       166 ----------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (253)
                                            |+..+.+|..-|+.+.|+||+ ++++++|-|..|++||-++++...       .+.+|
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~la-------sfRGH  408 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLA-------SFRGH  408 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhh-------hhhhc
Confidence                                  344566888999999999999 799999999999999999998765       88899


Q ss_pred             CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      -.+|+.++|+.|.+.+++++.|.++++|++
T Consensus       409 v~~VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  409 VAAVYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             cceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence            999999999999998889999999999986

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-37  Score=219.64  Aligned_cols=231  Identities=20%  Similarity=0.255  Sum_probs=188.7

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++++..+++ | ++++||+..+    +..+.|.+|.     ..|.+++|+ ++.+.+++|+.|.+|++|+.... +..+
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g----~~t~~f~GH~-----~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~-ck~t  141 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATG----ESTRRFVGHT-----KDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGV-CKYT  141 (315)
T ss_pred             cCCceEEeccccceEEEEEecCC----cEEEEEEecC-----CceEEEEec-CCCceeecCCCcceeeeeeeccc-EEEE
Confidence            4667777776 6 9999999998    8899999999     899999999 89999999999999999999754 4444


Q ss_pred             eec--ccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           81 LIA--HDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        81 ~~~--~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      +..  +.+.|.+++|+ +  ..+|++++.|++|++||+++-+   ......+|.+.++.++++| +|.++++|+.||. +
T Consensus       142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~-~  216 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---LRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGE-A  216 (315)
T ss_pred             EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---hhhccccccccEEEEEECC-CCCEEecCCCCce-E
Confidence            443  37899999999 4  6799999999999999999876   3444567888999999999 9999999999998 9


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe--eeccCCCceeEEEEc
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI--LAYTAGAEIEQLQWS  233 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~  233 (253)
                      .+||++..+. +..+. |...|.+++|+|+.  +.+++..+..|+|||+.+.........+..  ..........+++|+
T Consensus       217 ~LwdL~~~k~-lysl~-a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws  292 (315)
T KOG0279|consen  217 MLWDLNEGKN-LYSLE-AFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS  292 (315)
T ss_pred             EEEEccCCce-eEecc-CCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence            9999998764 55554 67899999999996  455555677799999998875542111111  111224556889999


Q ss_pred             CCCCceEEEEcCCcEEEEEC
Q 035558          234 SSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       234 ~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++|+.|+++-.|+.|++|++
T Consensus       293 ~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  293 ADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             CCCcEEEeeecCCcEEEEEe
Confidence            99999999999999999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.4e-37  Score=215.55  Aligned_cols=232  Identities=12%  Similarity=0.196  Sum_probs=196.2

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--ee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VD   78 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~   78 (253)
                      +..-+|++++ | +||+|...++    .+.++++...     +.|+.+... |+++.||+++. ..||+||+++++  ++
T Consensus         8 d~~viLvsA~YDhTIRfWqa~tG----~C~rTiqh~d-----sqVNrLeiT-pdk~~LAaa~~-qhvRlyD~~S~np~Pv   76 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALTG----ICSRTIQHPD-----SQVNRLEIT-PDKKDLAAAGN-QHVRLYDLNSNNPNPV   76 (311)
T ss_pred             CCceEEEeccCcceeeeeehhcC----eEEEEEecCc-----cceeeEEEc-CCcchhhhccC-CeeEEEEccCCCCCce
Confidence            3456888887 6 9999999999    9999998887     899999999 88999988874 689999999876  68


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .++.+|+..|+++.|. +++.+++|++||+++|||++.....+..    .+..+|+++..+| +...|+++..+|. |++
T Consensus        77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----~~~spVn~vvlhp-nQteLis~dqsg~-irv  150 (311)
T KOG0315|consen   77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----QHNSPVNTVVLHP-NQTELISGDQSGN-IRV  150 (311)
T ss_pred             eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc----cCCCCcceEEecC-CcceEEeecCCCc-EEE
Confidence            8899999999999999 9999999999999999999996543332    4456999999999 8889999999999 999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ||++........+.....+|.++...|+| .+|+.+...|+.++|++-...... ...+...+..|...+..+.+||+++
T Consensus       151 WDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s-~l~P~~k~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  151 WDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTAS-ELEPVHKFQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             EEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccc-cceEhhheecccceEEEEEECCCCc
Confidence            99998653233344456789999999999 699999999999999998744221 1122345678999999999999999


Q ss_pred             ceEEEEcCCcEEEEEC
Q 035558          238 DWVAIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~l  253 (253)
                      +|++++.|..++||+.
T Consensus       229 ~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  229 YLATCSSDKTVKIWNT  244 (311)
T ss_pred             EEEeecCCceEEEEec
Confidence            9999999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.3e-37  Score=218.65  Aligned_cols=229  Identities=17%  Similarity=0.248  Sum_probs=202.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCC--ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDE--DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      |.++++|+|+ | ...||++...  +...+..+++.+|.     +.+.|+.|-  +...|++++.|.+..+||+++++.+
T Consensus       107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-----gylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~  179 (343)
T KOG0286|consen  107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-----GYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQT  179 (343)
T ss_pred             CCCCeEEecCcCceeEEEecccccccccceeeeeecCcc-----ceeEEEEEc--CCCceEecCCCceEEEEEcccceEE
Confidence            6788899988 6 8999999864  33456778899999     899999996  4778899999999999999999999


Q ss_pred             eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           79 TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ..+.+|.+.|.++++.  +++.|++|+-|++.++||+|.+..   .....+|++.|++++|.| ++.-|++|+.|+. .+
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF~ghesDINsv~ffP-~G~afatGSDD~t-cR  254 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTFEGHESDINSVRFFP-SGDAFATGSDDAT-CR  254 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEeecccccccceEEEcc-CCCeeeecCCCce-eE
Confidence            9999999999999999  899999999999999999999974   444468888999999999 9999999999998 99


Q ss_pred             EEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          157 VLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      +||+|...+ +..+..  -..+|++++|+..| ++|++|..|.++.+||.-.++...       .+.+|.++|.++..+|
T Consensus       255 lyDlRaD~~-~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg-------~L~GHeNRvScl~~s~  325 (343)
T KOG0286|consen  255 LYDLRADQE-LAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVG-------VLAGHENRVSCLGVSP  325 (343)
T ss_pred             EEeecCCcE-EeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEE-------EeeccCCeeEEEEECC
Confidence            999998664 444442  34589999999999 799999999999999998877654       7889999999999999


Q ss_pred             CCCceEEEEcCCcEEEEE
Q 035558          235 SQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       235 ~~~~~~~~~~~~~i~vw~  252 (253)
                      +|..+.+++-|..+|||.
T Consensus       326 DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  326 DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCcEEEecchhHheeecC
Confidence            999888999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=216.35  Aligned_cols=230  Identities=14%  Similarity=0.155  Sum_probs=199.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----   75 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----   75 (253)
                      .+.++|++++ | .+.|||.-+.    .....+.-..     .-|..++|+ |+++++|.|+.|+...||++.+.     
T Consensus        65 ~Dsr~ivSaSqDGklIvWDs~Tt----nK~haipl~s-----~WVMtCA~s-PSg~~VAcGGLdN~Csiy~ls~~d~~g~  134 (343)
T KOG0286|consen   65 TDSRRIVSASQDGKLIVWDSFTT----NKVHAIPLPS-----SWVMTCAYS-PSGNFVACGGLDNKCSIYPLSTRDAEGN  134 (343)
T ss_pred             CCcCeEEeeccCCeEEEEEcccc----cceeEEecCc-----eeEEEEEEC-CCCCeEEecCcCceeEEEeccccccccc
Confidence            3566777777 5 9999998876    5555566666     789999999 89999999999999999999855     


Q ss_pred             -eeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           76 -AVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        76 -~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                       +..+.+.+|++.+.+..|.+...|+|++.|.+..+||+++++   .+....+|.+.|.++++.|.+++.+++|+-|.. 
T Consensus       135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~---~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~-  210 (343)
T KOG0286|consen  135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ---QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS-  210 (343)
T ss_pred             ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce---EEEEecCCcccEEEEecCCCCCCeEEecccccc-
Confidence             245668899999999999988899999999999999999998   445556889999999999999999999999999 


Q ss_pred             EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      .++||+|.+. +++.|.+|+..|++++|.|+| .-+++|++|++.++||++...+..     ......-..+|++++||.
T Consensus       211 aklWD~R~~~-c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a-----~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  211 AKLWDVRSGQ-CVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELA-----VYSHDSIICGITSVAFSK  283 (343)
T ss_pred             eeeeeccCcc-eeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEe-----eeccCcccCCceeEEEcc
Confidence            9999999975 699999999999999999999 599999999999999999977543     112223367899999999


Q ss_pred             CCCceEEEEcCCcEEEEEC
Q 035558          235 SQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       235 ~~~~~~~~~~~~~i~vw~l  253 (253)
                      .|+.|+++..|..+.+|+.
T Consensus       284 SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  284 SGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             cccEEEeeecCCceeEeec
Confidence            9999999999999999983

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-37  Score=218.49  Aligned_cols=229  Identities=25%  Similarity=0.382  Sum_probs=200.6

Q ss_pred             ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc
Q 035558            6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH   84 (253)
Q Consensus         6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~   84 (253)
                      .++++.+| ++++||+...   ..++..++.|+     ..|.++.|++.....+++++.|++|++|+...++.++++.+|
T Consensus        75 ~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~-----~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh  146 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMP---SKPIHKFKEHK-----REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH  146 (311)
T ss_pred             eEEEEecCceEEEeccCCC---CcchhHHHhhh-----hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence            34555556 9999996543   36788899999     899999999888888999999999999999999999999999


Q ss_pred             cccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558           85 DKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus        85 ~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      ...|...+|+  .++++++++.|+++++||++.......   ...|...+.++.|+..+.+.+++|+.|+. |+.||+|+
T Consensus       147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~---i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~  222 (311)
T KOG0277|consen  147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS---IEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRN  222 (311)
T ss_pred             ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE---EEeccceeEeecccccCCcEEEecCCCce-EEEEehhh
Confidence            9999999999  899999999999999999998764333   34556799999999989999999999998 99999999


Q ss_pred             CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEE
Q 035558          163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVA  241 (253)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~  241 (253)
                      .+.|+.++.+|.-.|..++|+|....+|++++.|-+++|||........      .....|..-+..+.|++..+ ++++
T Consensus       223 ~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~------e~~~~HtEFv~g~Dws~~~~~~vAs  296 (311)
T KOG0277|consen  223 LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI------ETVDHHTEFVCGLDWSLFDPGQVAS  296 (311)
T ss_pred             ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh------hhhhccceEEeccccccccCceeee
Confidence            9999999999999999999999887799999999999999999766443      35557899999999998755 4557


Q ss_pred             EEcCCcEEEEE
Q 035558          242 IAFSTKLQILR  252 (253)
Q Consensus       242 ~~~~~~i~vw~  252 (253)
                      ++-|+.+.||+
T Consensus       297 ~gWDe~l~Vw~  307 (311)
T KOG0277|consen  297 TGWDELLYVWN  307 (311)
T ss_pred             cccccceeeec
Confidence            88999999997

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-36  Score=239.02  Aligned_cols=228  Identities=17%  Similarity=0.292  Sum_probs=204.7

Q ss_pred             CCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            4 KPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         4 ~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .|+.||.|+.   .+-||+....    ..+...++|.     ..+++++++ |+++++++|+.||.|+|||..++-+..+
T Consensus       318 tGDWiA~g~~klgQLlVweWqsE----sYVlKQQgH~-----~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vT  387 (893)
T KOG0291|consen  318 TGDWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHS-----DRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVT  387 (893)
T ss_pred             cCCEEEEcCCccceEEEEEeecc----ceeeeccccc-----cceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEE
Confidence            5888998884   8999999987    7788888999     899999999 9999999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +..|+..|+.+.|+ .++.+++.+.||+|+.||+......+....+..  ....+++..| .|.++.+|+.|.-.|.+|+
T Consensus       388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p--~QfscvavD~-sGelV~AG~~d~F~IfvWS  464 (893)
T KOG0291|consen  388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP--IQFSCVAVDP-SGELVCAGAQDSFEIFVWS  464 (893)
T ss_pred             eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc--eeeeEEEEcC-CCCEEEeeccceEEEEEEE
Confidence            99999999999999 999999999999999999998876655544322  2678899999 8999999999988899999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      +++++. +..+.+|+++|.+++|+|.+ ..|+++|.|.+|++||+-......       ....+...+.+++|+|+|+.+
T Consensus       465 ~qTGql-lDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~v-------Etl~i~sdvl~vsfrPdG~el  535 (893)
T KOG0291|consen  465 VQTGQL-LDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTV-------ETLEIRSDVLAVSFRPDGKEL  535 (893)
T ss_pred             eecCee-eehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCcee-------eeEeeccceeEEEEcCCCCeE
Confidence            999875 88999999999999999999 599999999999999998765443       555678889999999999999


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      +.+..||.|.+|+.
T Consensus       536 aVaTldgqItf~d~  549 (893)
T KOG0291|consen  536 AVATLDGQITFFDI  549 (893)
T ss_pred             EEEEecceEEEEEh
Confidence            99999999999984

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-36  Score=228.79  Aligned_cols=227  Identities=23%  Similarity=0.385  Sum_probs=204.8

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .+|.+||+|+ + .+++|+...     .++.++..|+     ++|+++.|+ ..+++|++++.|+++.+||..+++..+.
T Consensus       245 ~~G~~LatG~~~G~~riw~~~G-----~l~~tl~~Hk-----gPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  245 NDGTLLATGSEDGEARIWNKDG-----NLISTLGQHK-----GPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             CCCCeEEEeecCcEEEEEecCc-----hhhhhhhccC-----CceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEe
Confidence            3689999999 4 999999988     7889999999     999999999 9999999999999999999999999999


Q ss_pred             eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      +.-|..+-.++.|-+...|++++.|+.|+++.+....+...+   .+|.++|.++.|+| .+.+|++++.|++ +++|..
T Consensus       314 f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~---~GH~g~V~alk~n~-tg~LLaS~SdD~T-lkiWs~  388 (524)
T KOG0273|consen  314 FEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTF---IGHHGEVNALKWNP-TGSLLASCSDDGT-LKIWSM  388 (524)
T ss_pred             eeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceee---ecccCceEEEEECC-CCceEEEecCCCe-eEeeec
Confidence            998988888899987889999999999999999887754444   35777999999999 9999999999998 999998


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCC--------CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSS--------CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      .... ....+.+|+..|+.+.|+|.|+        ..+++++.|++|++||+..+....       .+..|..+|++++|
T Consensus       389 ~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~-------~f~kH~~pVysvaf  460 (524)
T KOG0273|consen  389 GQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH-------TLMKHQEPVYSVAF  460 (524)
T ss_pred             CCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-------eeccCCCceEEEEe
Confidence            7655 5889999999999999999653        479999999999999999987654       67799999999999


Q ss_pred             cCCCCceEEEEcCCcEEEEEC
Q 035558          233 SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|+++++++++.|+.|.+|..
T Consensus       461 S~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  461 SPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             cCCCcEEEecCCCCeeEeccc
Confidence            999999999999999999963

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.4e-38  Score=233.54  Aligned_cols=226  Identities=16%  Similarity=0.303  Sum_probs=196.6

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++|+.|++|++  .+.+|+...-    .....++.|.     .+|.++.|+ +++.++++|+.+|.|++|+..- ..++.
T Consensus       106 PeGRRLltgs~SGEFtLWNg~~f----nFEtilQaHD-----s~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnm-nnVk~  174 (464)
T KOG0284|consen  106 PEGRRLLTGSQSGEFTLWNGTSF----NFETILQAHD-----SPVRTMKWS-HNGTWMISGDKGGMIKYWQPNM-NNVKI  174 (464)
T ss_pred             CCCceeEeecccccEEEecCcee----eHHHHhhhhc-----ccceeEEEc-cCCCEEEEcCCCceEEecccch-hhhHH
Confidence            46677777775  9999998663    5556678999     999999999 9999999999999999999874 44555


Q ss_pred             eeccc-ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           81 LIAHD-KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        81 ~~~~~-~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      +++|. ..|++++|+ ++..|++++.||+|+|||....++..++   .+|.-.|.+++|+| ...++++++.|.- |++|
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL---~GHgwdVksvdWHP-~kgLiasgskDnl-VKlW  249 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL---RGHGWDVKSVDWHP-TKGLIASGSKDNL-VKLW  249 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee---ccCCCCcceeccCC-ccceeEEccCCce-eEee
Confidence            55554 999999999 9999999999999999999988765555   46666899999999 8889999999996 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      |.+++. ++.++..|...|..+.|+|++ .+|+++|.|..+++||+++.+...       ...+|...++++.|+|-...
T Consensus       250 DprSg~-cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~-------~~r~Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  250 DPRSGS-CLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELF-------TYRGHKKDVTSLTWHPLNES  320 (464)
T ss_pred             cCCCcc-hhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHH-------Hhhcchhhheeecccccccc
Confidence            999977 599999999999999999999 699999999999999999776554       78899999999999998776


Q ss_pred             eE-EEEcCCcEEEEEC
Q 035558          239 WV-AIAFSTKLQILRV  253 (253)
Q Consensus       239 ~~-~~~~~~~i~vw~l  253 (253)
                      ++ +++.|+.+..|.+
T Consensus       321 lftsgg~Dgsvvh~~v  336 (464)
T KOG0284|consen  321 LFTSGGSDGSVVHWVV  336 (464)
T ss_pred             ceeeccCCCceEEEec
Confidence            66 7889999999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.6e-38  Score=232.99  Aligned_cols=228  Identities=17%  Similarity=0.301  Sum_probs=200.1

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .++..+++|++  .|++|+.+-     ..++.+++|..    ..|++++|+ |+...+++++.||+|+|||....+....
T Consensus       148 ~~g~wmiSgD~gG~iKyWqpnm-----nnVk~~~ahh~----eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~kee~v  217 (464)
T KOG0284|consen  148 HNGTWMISGDKGGMIKYWQPNM-----NNVKIIQAHHA----EAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEERV  217 (464)
T ss_pred             cCCCEEEEcCCCceEEecccch-----hhhHHhhHhhh----hhhheeccC-CCCceeEEecCCCeEEEEeccCCchhhe
Confidence            57888999885  999999987     45666666542    789999999 6888999999999999999998888888


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|.-.|.+++|+ ...++++++.|..|++||.+++.++..   ...|...|..+.|+| ++++|++++.|.. ++++|
T Consensus       218 L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t---lh~HKntVl~~~f~~-n~N~Llt~skD~~-~kv~D  292 (464)
T KOG0284|consen  218 LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT---LHGHKNTVLAVKFNP-NGNWLLTGSKDQS-CKVFD  292 (464)
T ss_pred             eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh---hhhccceEEEEEEcC-CCCeeEEccCCce-EEEEe
Confidence            99999999999999 889999999999999999999985444   456777999999999 8899999999998 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      +|+.++ +..+++|...++++.|+|-.+.+|.+|+.||.|..|.+...+ |.     +.....|...|++++|+|-|..|
T Consensus       293 iR~mkE-l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-p~-----~~i~~AHd~~iwsl~~hPlGhil  365 (464)
T KOG0284|consen  293 IRTMKE-LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-PL-----GEIPPAHDGEIWSLAYHPLGHIL  365 (464)
T ss_pred             hhHhHH-HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-cc-----cCCCcccccceeeeeccccceeE
Confidence            997665 899999999999999999877799999999999999998332 22     24566899999999999999877


Q ss_pred             EEEEcCCcEEEEE
Q 035558          240 VAIAFSTKLQILR  252 (253)
Q Consensus       240 ~~~~~~~~i~vw~  252 (253)
                      ++++.|..+++|.
T Consensus       366 ~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  366 ATGSNDRTVRFWT  378 (464)
T ss_pred             eecCCCcceeeec
Confidence            7888999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.1e-35  Score=207.30  Aligned_cols=228  Identities=21%  Similarity=0.342  Sum_probs=197.1

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeee-cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--e
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLL-NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--A   76 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~   76 (253)
                      |-.|.+||+++.  .||+|+...+ ..+.+...+ .+|+     ..|.+++|+ |.+++|++|+.|.++.||.-..+  +
T Consensus        24 p~~g~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hk-----rsVRsvAws-p~g~~La~aSFD~t~~Iw~k~~~efe   96 (312)
T KOG0645|consen   24 PGKGVILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHK-----RSVRSVAWS-PHGRYLASASFDATVVIWKKEDGEFE   96 (312)
T ss_pred             cCCceEEEeecCCceEEEEecCCC-CcEEEEEeccccch-----heeeeeeec-CCCcEEEEeeccceEEEeecCCCcee
Confidence            444778999985  9999999863 445666555 3577     899999999 88999999999999999987755  5


Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ++..+.+|+..|.+++|+ +|++||+++.|+.|-+|.+..............|...|..+.|+| ...+|+++++|++ |
T Consensus        97 cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnT-I  174 (312)
T KOG0645|consen   97 CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNT-I  174 (312)
T ss_pred             EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCe-E
Confidence            888999999999999999 999999999999999999998877777777778888999999999 8999999999999 9


Q ss_pred             EEEECCCC--CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          156 VVLDIRFP--TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       156 ~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                      ++|+-...  -.+++++.+|...|.+++|+|.| ..|++++.|++++||.....           ....|..+++.++|.
T Consensus       175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~-----------~~~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD-----------LSGMHSRALYDVPWD  242 (312)
T ss_pred             EEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC-----------cchhcccceEeeeec
Confidence            99987632  25689999999999999999999 69999999999999987632           344588999999999


Q ss_pred             CCCCceEEEEcCCcEEEEE
Q 035558          234 SSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       234 ~~~~~~~~~~~~~~i~vw~  252 (253)
                       ++ .+++++.|+.|++++
T Consensus       243 -~~-~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  243 -NG-VIASGGGDDAIRLFK  259 (312)
T ss_pred             -cc-ceEeccCCCEEEEEE
Confidence             55 588999999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.7e-37  Score=223.41  Aligned_cols=226  Identities=19%  Similarity=0.261  Sum_probs=202.4

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~   81 (253)
                      --++++++ + +|++||..++    ++.+.+++|.     ..+.+++|+ ..+.++++++.|-.+++||.++ .+++..+
T Consensus       120 ~~~v~~as~d~tikv~D~~tg----~~e~~LrGHt-----~sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~  189 (406)
T KOG0295|consen  120 EALVVSASEDATIKVFDTETG----ELERSLRGHT-----DSVFDISFD-ASGKYLATCSSDLSAKLWDFDTFFRCIKSL  189 (406)
T ss_pred             ceEEEEecCCceEEEEEccch----hhhhhhhccc-----cceeEEEEe-cCccEEEecCCccchhheeHHHHHHHHHHh
Confidence            34567776 4 9999999998    8899999999     789999999 8999999999998899999987 4677888


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      .+|...|.++.|- .++++++++.|.+|++|++.++.+...   ..+|...+..++.+. ++.++|+++.|.. +++|-+
T Consensus       190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t---~~~h~ewvr~v~v~~-DGti~As~s~dqt-l~vW~~  264 (406)
T KOG0295|consen  190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT---FPGHSEWVRMVRVNQ-DGTIIASCSNDQT-LRVWVV  264 (406)
T ss_pred             cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe---ccCchHhEEEEEecC-CeeEEEecCCCce-EEEEEe
Confidence            8999999999999 899999999999999999999985444   456666999999998 9999999999998 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecC--------------CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPH--------------SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE  226 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (253)
                      .+.+ +...++.|+.+|-+++|.|.              +.+++++++.|++|++||+.++....       .+.+|.+.
T Consensus       265 ~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~-------tL~ghdnw  336 (406)
T KOG0295|consen  265 ATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF-------TLVGHDNW  336 (406)
T ss_pred             ccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE-------EEecccce
Confidence            8854 57888999999999999873              22599999999999999999998765       88999999


Q ss_pred             eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          227 IEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |.+++|+|.|+++++++.|+.+++|++
T Consensus       337 Vr~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  337 VRGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             eeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence            999999999999999999999999986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=100.00  E-value=5.3e-36  Score=213.95  Aligned_cols=248  Identities=75%  Similarity=1.195  Sum_probs=220.7

Q ss_pred             CCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeee
Q 035558            4 KPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQ   80 (253)
Q Consensus         4 ~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~   80 (253)
                      .+++||+++|.+|+|.+...+....+...+..++...++++++++.|+..+.+++.+.+-|-+..|||++++.   ....
T Consensus       112 ~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  112 YPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             CcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            3578999999999999986545566777788888888999999999998899999999999999999999873   4566


Q ss_pred             eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           81 LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        81 ~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      +.+|..+|.+++|.  ..+.|++++.||.+|+||+|..+...++++.+....+...++|++.+.+++|+-..|...|.+.
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            77899999999999  5679999999999999999999988899988876679999999999999999999998889999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      |+|....++.+++.|.+.|++++|.|.....+++++.|..+.+||+...-.  .....|......+..|+.++|++..+.
T Consensus       272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~--~~~~dPilay~a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR--ENGEDPILAYTAGGEVNQIQWSSSQPD  349 (364)
T ss_pred             EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc--cCCCCchhhhhccceeeeeeecccCCC
Confidence            999999999999999999999999999888999999999999999987654  112456677778899999999999889


Q ss_pred             eEEEEcCCcEEEEEC
Q 035558          239 WVAIAFSTKLQILRV  253 (253)
Q Consensus       239 ~~~~~~~~~i~vw~l  253 (253)
                      +++.+.++.+.+.++
T Consensus       350 wiai~~~kkleiLRV  364 (364)
T KOG0290|consen  350 WIAICFGKKLEILRV  364 (364)
T ss_pred             EEEEEecCeeeEEeC
Confidence            999999999998875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.7e-37  Score=226.90  Aligned_cols=220  Identities=16%  Similarity=0.317  Sum_probs=196.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +.+.+++|. | +|+|||.+..    .+...+.||+     +.|.|+.|.   .+.+++|+.|.+|++||.++++++.++
T Consensus       206 DD~kiVSGlrDnTikiWD~n~~----~c~~~L~GHt-----GSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tl  273 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNSL----ECLKILTGHT-----GSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTL  273 (499)
T ss_pred             cchhhhcccccCceEEeccccH----HHHHhhhcCC-----CcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHH
Confidence            345677777 4 9999999986    8999999999     999999986   669999999999999999999999999


Q ss_pred             ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      ..|...|..+.|+ +.++++++.|.++.+||+.............+|...|+.+.|+   .+++++++.|.+ |++|++.
T Consensus       274 ihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRT-ikvW~~s  348 (499)
T KOG0281|consen  274 IHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRT-IKVWSTS  348 (499)
T ss_pred             hhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCce-EEEEecc
Confidence            9999999999996 7799999999999999999887655555667888899999995   569999999998 9999999


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      +.. .+..+.+|...|.|+.+.  + +++++|+.|.+|++||++.+....       .+.+|..-|.++.|..  +.+++
T Consensus       349 t~e-fvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLR-------vLeGHEeLvRciRFd~--krIVS  415 (499)
T KOG0281|consen  349 TCE-FVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLR-------VLEGHEELVRCIRFDN--KRIVS  415 (499)
T ss_pred             cee-eehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHHHH-------HHhchHHhhhheeecC--ceeee
Confidence            876 489999999999888875  4 699999999999999999998765       8889999999999964  46999


Q ss_pred             EEcCCcEEEEEC
Q 035558          242 IAFSTKLQILRV  253 (253)
Q Consensus       242 ~~~~~~i~vw~l  253 (253)
                      ++.||.|+||++
T Consensus       416 GaYDGkikvWdl  427 (499)
T KOG0281|consen  416 GAYDGKIKVWDL  427 (499)
T ss_pred             ccccceEEEEec
Confidence            999999999986

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-35  Score=206.00  Aligned_cols=222  Identities=16%  Similarity=0.339  Sum_probs=189.9

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeeeeeecccccEEEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQLIAHDKEVYDIA   92 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~   92 (253)
                      .+.|.++..+ +.......+.-.      +.+..++|++...+.+++++.||++++||... ..++..++.|+.+|.++.
T Consensus        39 ~L~ile~~~~-~gi~e~~s~d~~------D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svd  111 (311)
T KOG0277|consen   39 RLFILEVTDP-KGIQECQSYDTE------DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVD  111 (311)
T ss_pred             eEEEEecCCC-CCeEEEEeeecc------cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEec
Confidence            8888888644 223333333322      68999999988889999999999999999643 348888999999999999


Q ss_pred             ec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee
Q 035558           93 WG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL  170 (253)
Q Consensus        93 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~  170 (253)
                      |+  .++.+++++-|++|++|+...++.+   ....+|+..|+..+|+|..++++++++.|+. +++||++...+.+ .+
T Consensus       112 wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv---~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~-l~lwdvr~~gk~~-~i  186 (311)
T KOG0277|consen  112 WNTVRRRIFLTSSWDGTIKLWDPNRPNSV---QTFNGHNSCIYQAAFSPHIPNLFASASGDGT-LRLWDVRSPGKFM-SI  186 (311)
T ss_pred             cccccceeEEeeccCCceEeecCCCCcce---EeecCCccEEEEEecCCCCCCeEEEccCCce-EEEEEecCCCcee-EE
Confidence            99  8888999999999999999887743   3356788899999999999999999999998 9999999887644 48


Q ss_pred             cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEE
Q 035558          171 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQ  249 (253)
Q Consensus       171 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~  249 (253)
                      ..|...|.++.|+.-.++.|+||+.|+.|++||+++.+.|.      ..+.+|+-.|..+.|||....++ +++.|-++|
T Consensus       187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL------FELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc------eeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence            99999999999999877899999999999999999999776      67899999999999999876555 788999999


Q ss_pred             EEEC
Q 035558          250 ILRV  253 (253)
Q Consensus       250 vw~l  253 (253)
                      ||+.
T Consensus       261 iw~~  264 (311)
T KOG0277|consen  261 IWDP  264 (311)
T ss_pred             eccc
Confidence            9974

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.9e-35  Score=208.56  Aligned_cols=230  Identities=17%  Similarity=0.253  Sum_probs=195.2

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      | +|.+||+|+ | .|.+|++...   .+....+++|+     ++|..+.|. .+++.+++++.|.+|+.||.++++.+.
T Consensus        57 P-~gs~~aSgG~Dr~I~LWnv~gd---ceN~~~lkgHs-----gAVM~l~~~-~d~s~i~S~gtDk~v~~wD~~tG~~~r  126 (338)
T KOG0265|consen   57 P-DGSCFASGGSDRAIVLWNVYGD---CENFWVLKGHS-----GAVMELHGM-RDGSHILSCGTDKTVRGWDAETGKRIR  126 (338)
T ss_pred             C-CCCeEeecCCcceEEEEecccc---ccceeeecccc-----ceeEeeeec-cCCCEEEEecCCceEEEEecccceeee
Confidence            5 788899887 6 9999997553   25567788999     999999999 999999999999999999999999999


Q ss_pred             eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+++|..-|+++.-+  ...++.+++.||++++||+|+....+..    ....+++++.|.. ++..+.+|+-|+. |++
T Consensus       127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~----~~kyqltAv~f~d-~s~qv~sggIdn~-ikv  200 (338)
T KOG0265|consen  127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF----ENKYQLTAVGFKD-TSDQVISGGIDND-IKV  200 (338)
T ss_pred             hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc----ccceeEEEEEecc-cccceeeccccCc-eee
Confidence            999999999999977  6678889999999999999988754443    2233899999998 8899999999998 999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC----CCceeEEEEc
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA----GAEIEQLQWS  233 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~  233 (253)
                      ||++.... ...+.+|..+|+.+..+|+| .++.+-+.|.++++||++......   .....+.+|    ......++|+
T Consensus       201 Wd~r~~d~-~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~---R~v~if~g~~hnfeknlL~csws  275 (338)
T KOG0265|consen  201 WDLRKNDG-LYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQ---RCVKIFQGHIHNFEKNLLKCSWS  275 (338)
T ss_pred             eccccCcc-eEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCC---ceEEEeecchhhhhhhcceeecc
Confidence            99998764 89999999999999999999 599999999999999998754222   111233333    3345778999


Q ss_pred             CCCCceEEEEcCCcEEEEE
Q 035558          234 SSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       234 ~~~~~~~~~~~~~~i~vw~  252 (253)
                      |++..+-+++.|..+.+|+
T Consensus       276 p~~~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  276 PNGTKITAGSADRFVYVWD  294 (338)
T ss_pred             CCCCccccccccceEEEee
Confidence            9999888999999999997

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-35  Score=226.92  Aligned_cols=230  Identities=16%  Similarity=0.230  Sum_probs=207.2

Q ss_pred             CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      |..+=+|++-.. .|.||+.++.    ..++.+....     .||.+..|- .-.+++++|++|..|+||+..+++.+..
T Consensus        23 PtePw~la~LynG~V~IWnyetq----tmVksfeV~~-----~PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ekV~~   92 (794)
T KOG0276|consen   23 PTEPWILAALYNGDVQIWNYETQ----TMVKSFEVSE-----VPVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEKVKT   92 (794)
T ss_pred             CCCceEEEeeecCeeEEEecccc----eeeeeeeecc-----cchhhheee-eccceEEEecCCceEEEEecccceeeEE
Confidence            556666777666 9999999997    8888888887     899999998 7889999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|.+-|++++.+ ...++++++.|-+|++||.+..-..  .....+|+.-|++++|+|.+.+.+|+++-|.+ |++|.
T Consensus        93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~--~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT-VKVWs  169 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWAC--EQTFEGHEHYVMQVAFNPKDPNTFASASLDRT-VKVWS  169 (794)
T ss_pred             eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceee--eeEEcCcceEEEEEEecCCCccceeeeecccc-EEEEE
Confidence            99999999999999 8889999999999999999876533  33445677799999999999999999999999 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCC-eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSC-HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      +.++. |..++.+|...|++++|-+-|++ +|++|+.|.+|+|||.++..+..       .+.+|...|..+.|+|.-+.
T Consensus       170 lgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~-------TLeGHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  170 LGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ-------TLEGHTNNVSFVFFHPELPI  241 (794)
T ss_pred             cCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH-------HhhcccccceEEEecCCCcE
Confidence            99865 68999999999999999885532 99999999999999999988765       88899999999999999999


Q ss_pred             eEEEEcCCcEEEEE
Q 035558          239 WVAIAFSTKLQILR  252 (253)
Q Consensus       239 ~~~~~~~~~i~vw~  252 (253)
                      +++++.||++|||+
T Consensus       242 iisgsEDGTvriWh  255 (794)
T KOG0276|consen  242 IISGSEDGTVRIWN  255 (794)
T ss_pred             EEEecCCccEEEec
Confidence            99999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.4e-35  Score=213.90  Aligned_cols=227  Identities=19%  Similarity=0.262  Sum_probs=203.2

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      .|.+|++++ | .+++||.+..   +++++.+.+|+     ..|.+++|- |.++++++++.|.+|+.|++.++.++.++
T Consensus       161 ~Gk~l~tcSsDl~~~LWd~~~~---~~c~ks~~gh~-----h~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~  231 (406)
T KOG0295|consen  161 SGKYLATCSSDLSAKLWDFDTF---FRCIKSLIGHE-----HGVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTF  231 (406)
T ss_pred             CccEEEecCCccchhheeHHHH---HHHHHHhcCcc-----cceeeEEEE-ecCCeeeecccccceeEEecccceeEEec
Confidence            467888888 5 7999999873   57888899998     889999999 77899999999999999999999999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC--------------CCCEEE
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ--------------DPRYMA  146 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~  146 (253)
                      .+|...|..++.+ |+.++++++.|.++++|-+.++++...+   ..|+.+|-+++|-|.              .+.++.
T Consensus       232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l---R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~  308 (406)
T KOG0295|consen  232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL---REHEHPVECIAWAPESSYPSISEATGSTNGGQVLG  308 (406)
T ss_pred             cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh---hccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence            9999999999999 9999999999999999999998644333   355668999998763              235899


Q ss_pred             EEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558          147 TIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE  226 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (253)
                      +++.|+. |++||+.++. ++.++.+|...|..++|+|.| +||+++.+|+++++||+++.++..       ....|..-
T Consensus       309 s~SrDkt-Ik~wdv~tg~-cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk-------~~~ah~hf  378 (406)
T KOG0295|consen  309 SGSRDKT-IKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMK-------TLEAHEHF  378 (406)
T ss_pred             eecccce-EEEEeccCCe-EEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeee-------ccCCCcce
Confidence            9999998 9999999976 599999999999999999999 799999999999999999988765       66689999


Q ss_pred             eeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          227 IEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++++.|+.+.+++++++-|..+++|+
T Consensus       379 vt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  379 VTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eEEEecCCCCceEEeccccceeeeee
Confidence            99999999999999999999999997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.5e-34  Score=229.31  Aligned_cols=230  Identities=20%  Similarity=0.272  Sum_probs=193.7

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec-cCceeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-EREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~   79 (253)
                      +++..+++++ + .+++|+.... .. .....+.+|.     ..|.+++|+ +++.++++++.|++|++||+ ..+..++
T Consensus       169 ~~g~~l~~~~~~~~i~~~~~~~~-~~-~~~~~l~~h~-----~~v~~~~fs-~d~~~l~s~s~D~tiriwd~~~~~~~~~  240 (456)
T KOG0266|consen  169 PDGRALAAASSDGLIRIWKLEGI-KS-NLLRELSGHT-----RGVSDVAFS-PDGSYLLSGSDDKTLRIWDLKDDGRNLK  240 (456)
T ss_pred             CCCCeEEEccCCCcEEEeecccc-cc-hhhccccccc-----cceeeeEEC-CCCcEEEEecCCceEEEeeccCCCeEEE
Confidence            3556677765 5 9999999665 11 2666778888     899999999 89999999999999999999 5558999


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      ++++|...|++++|+ .++++++|+.|++|++||+++++.   ......|...|++++|++ ++++|++++.|+. |++|
T Consensus       241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~---~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~-i~vw  315 (456)
T KOG0266|consen  241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC---VRKLKGHSDGISGLAFSP-DGNLLVSASYDGT-IRVW  315 (456)
T ss_pred             EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE---EEeeeccCCceEEEEECC-CCCEEEEcCCCcc-EEEE
Confidence            999999999999999 889999999999999999999764   444457777999999999 9999999999998 9999


Q ss_pred             ECCCCCC-Ceeeecccccc--eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC---ceeEEEE
Q 035558          159 DIRFPTL-PVVELQRHQAS--VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA---EIEQLQW  232 (253)
Q Consensus       159 d~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~  232 (253)
                      |+.++.. ++..+..+...  +++++|+|++ .++++++.|+.+++||+.....+.       ...+|..   .+.+...
T Consensus       316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~-------~~~~~~~~~~~~~~~~~  387 (456)
T KOG0266|consen  316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVG-------TYTGHSNLVRCIFSPTL  387 (456)
T ss_pred             ECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCccee-------eecccCCcceeEecccc
Confidence            9998763 24566655554  9999999999 699999999999999999887654       5555654   4455566


Q ss_pred             cCCCCceEEEEcCCcEEEEEC
Q 035558          233 SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++.++.+++++.|+.|.+|++
T Consensus       388 ~~~~~~i~sg~~d~~v~~~~~  408 (456)
T KOG0266|consen  388 STGGKLIYSGSEDGSVYVWDS  408 (456)
T ss_pred             cCCCCeEEEEeCCceEEEEeC
Confidence            888999999999999999985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=212.24  Aligned_cols=223  Identities=21%  Similarity=0.268  Sum_probs=201.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ..+++++|+ | +++|||+.++    ++..++.+|.     ..|..++++ +-..++++++.|+.|+.||++..+.++.+
T Consensus       162 ~n~wf~tgs~DrtikIwDlatg----~LkltltGhi-----~~vr~vavS-~rHpYlFs~gedk~VKCwDLe~nkvIR~Y  231 (460)
T KOG0285|consen  162 GNEWFATGSADRTIKIWDLATG----QLKLTLTGHI-----ETVRGVAVS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHY  231 (460)
T ss_pred             CceeEEecCCCceeEEEEcccC----eEEEeecchh-----heeeeeeec-ccCceEEEecCCCeeEEEechhhhhHHHh
Confidence            367888988 5 9999999998    9999999999     899999999 77889999999999999999999999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      .+|-..|.+++.+ .-+.|++|+.|.++++||+++...   +....+|..+|.++.+.| ....+++|+.|+. |++||+
T Consensus       232 hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~t-vrlWDl  306 (460)
T KOG0285|consen  232 HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---VHVLSGHTNPVASVMCQP-TDPQVITGSHDST-VRLWDL  306 (460)
T ss_pred             ccccceeEEEeccccceeEEecCCcceEEEeeecccce---EEEecCCCCcceeEEeec-CCCceEEecCCce-EEEeee
Confidence            9999999999999 889999999999999999999874   444567888999999999 6678999999999 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      +.++. ...+..|...+.+++.+|.. ..+++++.| .|+-|++..+....       .+.+|..-|++++...++ .++
T Consensus       307 ~agkt-~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~-------nlsgh~~iintl~~nsD~-v~~  375 (460)
T KOG0285|consen  307 RAGKT-MITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQ-------NLSGHNAIINTLSVNSDG-VLV  375 (460)
T ss_pred             ccCce-eEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccchhh-------ccccccceeeeeeeccCc-eEE
Confidence            99775 88888999999999999997 588888876 58999999887554       577899999999999887 688


Q ss_pred             EEEcCCcEEEEE
Q 035558          241 AIAFSTKLQILR  252 (253)
Q Consensus       241 ~~~~~~~i~vw~  252 (253)
                      +++.++.+.+|+
T Consensus       376 ~G~dng~~~fwd  387 (460)
T KOG0285|consen  376 SGGDNGSIMFWD  387 (460)
T ss_pred             EcCCceEEEEEe
Confidence            999999999997

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-34  Score=231.05  Aligned_cols=223  Identities=19%  Similarity=0.335  Sum_probs=191.3

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      |+.++|++++ | +||+|.+.+.    .++..+++|.     .||..+.|+ |.|-++|||+.|++.++|......+.+.
T Consensus       461 Pd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~-----~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  461 PDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHL-----APVWDVQFA-PRGYYFATASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             ccccceeeccCCcceeeeecccc----eeEEEecCCC-----cceeeEEec-CCceEEEecCCCceeeeeecccCCchhh
Confidence            3455677776 5 9999999997    8899999999     999999999 8899999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|-+.|.|+.|+ +.+++++||.|.+|++||+.++...+++   .+|.++|.+++|+| .|.+|++|+.++. |++||
T Consensus       531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp-~Gr~LaSg~ed~~-I~iWD  605 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSP-CGRYLASGDEDGL-IKIWD  605 (707)
T ss_pred             hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcC-CCceEeecccCCc-EEEEE
Confidence            99999999999999 9999999999999999999999855444   57888999999999 9999999999999 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-----------------CCCCCCeeecc
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV-----------------EGGLDPILAYT  222 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~~  222 (253)
                      +.++.. +..+.+|.+.|.++.|+.+| ..|++|+.|.+|++||+.......                 ........+..
T Consensus       606 l~~~~~-v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~t  683 (707)
T KOG0263|consen  606 LANGSL-VKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYT  683 (707)
T ss_pred             cCCCcc-hhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeee
Confidence            998764 89999999999999999999 699999999999999998654330                 00011223344


Q ss_pred             CCCceeEEEEcCCCCceEEEE
Q 035558          223 AGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       223 ~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ...+|..+.|...+ .+++.|
T Consensus       684 K~tpv~~l~FtrrN-l~L~~g  703 (707)
T KOG0263|consen  684 KNTPVVGLHFTRRN-LLLAVG  703 (707)
T ss_pred             cCceEEEEEEeccc-eeEEec
Confidence            56789999998776 444443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.7e-34  Score=229.66  Aligned_cols=228  Identities=19%  Similarity=0.317  Sum_probs=194.7

Q ss_pred             CCCceEEeec-C-cEEEEEc-cCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            3 QKPDLLATSS-D-FLRVWRI-SDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      +++.++++++ | ++++||+ ..+    ..++++++|.     ..|++++|+ +.++++++|+.|++|++||++++++..
T Consensus       213 ~d~~~l~s~s~D~tiriwd~~~~~----~~~~~l~gH~-----~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~~~~  282 (456)
T KOG0266|consen  213 PDGSYLLSGSDDKTLRIWDLKDDG----RNLKTLKGHS-----TYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGECVR  282 (456)
T ss_pred             CCCcEEEEecCCceEEEeeccCCC----eEEEEecCCC-----CceEEEEec-CCCCEEEEecCCCcEEEEeccCCeEEE
Confidence            4566888888 4 9999999 443    7889999999     899999999 677999999999999999999999999


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC--eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH--STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      .+.+|.+.|++++|+ ++++|++++.|+.|++||+.++..  ...+....... ++++++|+| ++.+++++..|+. ++
T Consensus       283 ~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~-~~  359 (456)
T KOG0266|consen  283 KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP-NGKYLLSASLDRT-LK  359 (456)
T ss_pred             eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC-CCcEEEEecCCCe-EE
Confidence            999999999999999 999999999999999999999983  33333333333 699999999 9999999999988 99


Q ss_pred             EEECCCCCCCeeeecccccc---eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEE
Q 035558          157 VLDIRFPTLPVVELQRHQAS---VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQW  232 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~  232 (253)
                      +||++.... ...+.+|...   +.+...++.+ .++++|+.|+.|++||+.++....       ...+| ...+..++|
T Consensus       360 ~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~-------~l~~h~~~~~~~~~~  430 (456)
T KOG0266|consen  360 LWDLRSGKS-VGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGILQ-------RLEGHSKAAVSDLSS  430 (456)
T ss_pred             EEEccCCcc-eeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchhh-------hhcCCCCCceecccc
Confidence            999998764 6777777664   3444556777 699999999999999999876554       77788 899999999


Q ss_pred             cCCCCceEEEE--cCCcEEEEE
Q 035558          233 SSSQPDWVAIA--FSTKLQILR  252 (253)
Q Consensus       233 ~~~~~~~~~~~--~~~~i~vw~  252 (253)
                      +|....+++.+  .|+.+++|+
T Consensus       431 ~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  431 HPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             CCCcCeeeecCcCCCceEEEec
Confidence            99998777766  688899996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.3e-35  Score=214.28  Aligned_cols=207  Identities=21%  Similarity=0.254  Sum_probs=187.2

Q ss_pred             ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC
Q 035558           26 RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA  104 (253)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~  104 (253)
                      ++++.+.+.+|.     +-|.|+++. |...+|++|+.|++|+|||+.++++..++.+|...|..++++ ...++.+++.
T Consensus       140 pwKl~rVi~gHl-----gWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  140 PWKLYRVISGHL-----GWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             cceehhhhhhcc-----ceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence            457778889999     999999999 778999999999999999999999999999999999999999 8889999999


Q ss_pred             CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec
Q 035558          105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP  184 (253)
Q Consensus       105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~  184 (253)
                      |+.|+.||++.++   .+....+|-+.|++++.+| .-+.|++|+.|.. +++||+|+.. .+..+.+|..+|.++.+.|
T Consensus       214 dk~VKCwDLe~nk---vIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst-~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~  287 (460)
T KOG0285|consen  214 DKQVKCWDLEYNK---VIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDST-IRVWDIRTRA-SVHVLSGHTNPVASVMCQP  287 (460)
T ss_pred             CCeeEEEechhhh---hHHHhccccceeEEEeccc-cceeEEecCCcce-EEEeeecccc-eEEEecCCCCcceeEEeec
Confidence            9999999999987   6777788888999999999 8999999999998 9999999965 4999999999999999999


Q ss_pred             CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          185 HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      -.+ .+++||.|++|++||++.++...       .+..|...+.+++.+|... +++.+.-+.++-|++
T Consensus       288 ~dp-qvit~S~D~tvrlWDl~agkt~~-------tlt~hkksvral~lhP~e~-~fASas~dnik~w~~  347 (460)
T KOG0285|consen  288 TDP-QVITGSHDSTVRLWDLRAGKTMI-------TLTHHKKSVRALCLHPKEN-LFASASPDNIKQWKL  347 (460)
T ss_pred             CCC-ceEEecCCceEEEeeeccCceeE-------eeecccceeeEEecCCchh-hhhccCCccceeccC
Confidence            886 89999999999999999988654       7888999999999999986 455555556787764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.5e-34  Score=211.12  Aligned_cols=227  Identities=22%  Similarity=0.382  Sum_probs=195.9

Q ss_pred             eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----------
Q 035558            7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----------   74 (253)
Q Consensus         7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------   74 (253)
                      .+++++ | ++++|..+.++...+.....+||+     .+|-+++.. +++..+++|+.|.+|++|+.+.          
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk-----~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHK-----RSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhhhHHhHhcccc-----cceeEEEec-CCCCeEEeecccceeeecccCCCccccccccc
Confidence            466666 6 999999988755556666677999     899999999 8999999999999999999332          


Q ss_pred             ---------------ceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeC
Q 035558           75 ---------------EAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNK  139 (253)
Q Consensus        75 ---------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~  139 (253)
                                     ..++..+.+|..+|.++.|++...+++++.|.+|+.||+.++.....+..    ...+.++..+|
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~----~ksl~~i~~~~  310 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT----NKSLNCISYSP  310 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec----CcceeEeeccc
Confidence                           12455678999999999999888999999999999999999986555433    23899999999


Q ss_pred             CCCCEEEEEEeCCCeEEEEECCCCC--CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC
Q 035558          140 QDPRYMATIIMDSAKVVVLDIRFPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP  217 (253)
Q Consensus       140 ~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  217 (253)
                       ..++|++|+.|.. +++||.|++.  ...+++.+|...|.++.|+|.....|++|+.|+++++||+++...|.      
T Consensus       311 -~~~Ll~~gssdr~-irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl------  382 (423)
T KOG0313|consen  311 -LSKLLASGSSDRH-IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL------  382 (423)
T ss_pred             -ccceeeecCCCCc-eeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc------
Confidence             9999999999998 9999999875  34577889999999999999998899999999999999999988776      


Q ss_pred             eeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          218 ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       218 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ..+.+|...|.++.|...+ .++++|.|+.++|++
T Consensus       383 ydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  383 YDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFK  416 (423)
T ss_pred             eeeccCCceEEEEeccCCc-eEEeccCcceEEEec
Confidence            6888999999999998655 699999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.4e-35  Score=221.27  Aligned_cols=228  Identities=16%  Similarity=0.327  Sum_probs=194.0

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |..+.+|++++ | .|+||++...   ..+++++.+|.     .+|.+++|+ ..+..+++++.|+.|++||+++|+++.
T Consensus       224 p~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~-----k~Vrd~~~s-~~g~~fLS~sfD~~lKlwDtETG~~~~  294 (503)
T KOG0282|consen  224 PKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHR-----KPVRDASFN-NCGTSFLSASFDRFLKLWDTETGQVLS  294 (503)
T ss_pred             cceeeEEEecCCCceEEEEEEecC---cceehhhhcch-----hhhhhhhcc-ccCCeeeeeecceeeeeeccccceEEE
Confidence            56788999988 6 9999999762   28999999999     899999999 899999999999999999999999999


Q ss_pred             eeecccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLIAHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+. ....++++.|+ ++ +.|++|+.|+.|+.||+++++   ++.....|-+.|..+.|-+ ++..+++++.++. +++
T Consensus       295 ~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks-~ri  368 (503)
T KOG0282|consen  295 RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILDITFVD-EGRRFISSSDDKS-VRI  368 (503)
T ss_pred             EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheeeeEEcc-CCceEeeeccCcc-EEE
Confidence            887 35678999999 54 899999999999999999998   5566667778999999999 9999999999998 999


Q ss_pred             EECCCCCC---------------------------------------------Ceeeecccc--cceeEEEEecCCCCeE
Q 035558          158 LDIRFPTL---------------------------------------------PVVELQRHQ--ASVNAIAWAPHSSCHI  190 (253)
Q Consensus       158 ~d~~~~~~---------------------------------------------~~~~~~~~~--~~i~~~~~~~~~~~~l  190 (253)
                      |+.+.+-.                                             ..+.+.+|.  +.-..+.|+||| .+|
T Consensus       369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l  447 (503)
T KOG0282|consen  369 WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTL  447 (503)
T ss_pred             EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC-CeE
Confidence            99875421                                             111233443  345668999999 699


Q ss_pred             EEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc-eEEEEcCCcEEEEE
Q 035558          191 CTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD-WVAIAFSTKLQILR  252 (253)
Q Consensus       191 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw~  252 (253)
                      ++|+.||.+.+||.++-+...       .+..|..++..+.|+|..+. +++++-+|.|++|+
T Consensus       448 ~SGdsdG~v~~wdwkt~kl~~-------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  448 CSGDSDGKVNFWDWKTTKLVS-------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EeecCCccEEEeechhhhhhh-------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999876544       77789999999999998654 56888999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.9e-33  Score=238.58  Aligned_cols=236  Identities=16%  Similarity=0.269  Sum_probs=193.5

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |..+.+|++++ + .|++||+.++    +.+..+.+|.     ..|++++|+|.++.+|++|+.||.|++||++++..+.
T Consensus       542 ~~~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~-----~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        542 SYIKSQVASSNFEGVVQVWDVARS----QLVTEMKEHE-----KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCC----eEEEEecCCC-----CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            45567788887 5 9999999887    7788889998     8999999996688999999999999999999988888


Q ss_pred             eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+..+ ..+.++.|+  ++.+|++|+.||.|++||+++.+..  +.....|...|.++.|.  ++.++++++.|+. |++
T Consensus       613 ~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~--~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~-iki  686 (793)
T PLN00181        613 TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP--LCTMIGHSKTVSYVRFV--DSSTLVSSSTDNT-LKL  686 (793)
T ss_pred             EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc--ceEecCCCCCEEEEEEe--CCCEEEEEECCCE-EEE
Confidence            77744 689999996  7899999999999999999876521  22234677799999996  5778999999998 999


Q ss_pred             EECCCC-----CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC---CCCC---CeeeccCCCc
Q 035558          158 LDIRFP-----TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE---GGLD---PILAYTAGAE  226 (253)
Q Consensus       158 ~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~---~~~~~~~~~~  226 (253)
                      ||++..     ..++..+.+|...+..++|+|++ .+|++|+.|+.|++|+.........   ....   ......+...
T Consensus       687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  765 (793)
T PLN00181        687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF  765 (793)
T ss_pred             EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence            999853     24577889999999999999998 6999999999999999865432110   0000   0112345678


Q ss_pred             eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          227 IEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |.+++|+|++..+++++.+|.|+||+|
T Consensus       766 V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        766 ISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.5e-34  Score=226.14  Aligned_cols=230  Identities=18%  Similarity=0.243  Sum_probs=202.2

Q ss_pred             CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558            4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----   76 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----   76 (253)
                      .|.+|++|+.  ++++|.++++.....++....+|.     ..|.+++++.....+|++++.|+++++|++...+     
T Consensus       376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~-----~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~  450 (775)
T KOG0319|consen  376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT-----NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP  450 (775)
T ss_pred             cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc-----cccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence            5679999994  999999966544556777788898     8999999986667899999999999999997622     


Q ss_pred             e----eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           77 V----DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        77 ~----~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      .    ......|...|++++.+ +..+++|||.|.+.++|++.+..   ......+|...+.++.|+| ..+.+++++.|
T Consensus       451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD  526 (775)
T KOG0319|consen  451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---LLGVLSGHTRGVWCVSFSK-NDQLLATCSGD  526 (775)
T ss_pred             ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce---EEEEeeCCccceEEEEecc-ccceeEeccCC
Confidence            1    11234799999999999 99999999999999999999554   4455568888999999999 88999999999


Q ss_pred             CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558          152 SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ  231 (253)
Q Consensus       152 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  231 (253)
                      .+ |+||.+.+.. +++++.+|...|..+.|-.++ ..|++++.||-|++|++.+.....       .+..|..+|++++
T Consensus       527 ~T-vKIW~is~fS-ClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~~-------tlD~H~DrvWaL~  596 (775)
T KOG0319|consen  527 KT-VKIWSISTFS-CLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECEM-------TLDAHNDRVWALS  596 (775)
T ss_pred             ce-EEEEEeccce-eeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhhh-------hhhhccceeEEEe
Confidence            98 9999999876 699999999999999999999 699999999999999999988765       8889999999999


Q ss_pred             EcCCCCceEEEEcCCcEEEEE
Q 035558          232 WSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      -+|....+++++.|+.+.+|+
T Consensus       597 ~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  597 VSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ecCccceeEecCCCeEEEEee
Confidence            999999889999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-32  Score=235.46  Aligned_cols=236  Identities=18%  Similarity=0.272  Sum_probs=190.7

Q ss_pred             CCCceEEeec-C-cEEEEEccCCc----cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558            3 QKPDLLATSS-D-FLRVWRISDED----RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      ++++++|+|+ + .|+||++....    ........+.++      ..|.+++|+|..+.+|++++.||+|++||+.+++
T Consensus       493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~  566 (793)
T PLN00181        493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR------SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ  566 (793)
T ss_pred             CCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc------CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe
Confidence            3677888887 5 99999976420    000112233332      5789999997778999999999999999999999


Q ss_pred             eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           77 VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      .+..+.+|...|++++|+  ++.+|++|+.||+|++||++++.....+.   . ...+.++.|++.++.++++|+.|+. 
T Consensus       567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~-~~~v~~v~~~~~~g~~latgs~dg~-  641 (793)
T PLN00181        567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---T-KANICCVQFPSESGRSLAFGSADHK-  641 (793)
T ss_pred             EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---c-CCCeEEEEEeCCCCCEEEEEeCCCe-
Confidence            999999999999999998  67899999999999999999887544432   2 2478999997768999999999998 


Q ss_pred             EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      |++||+++...++..+.+|...|.++.|. ++ .+|++++.|++|++||++...... .......+.+|...+..++|+|
T Consensus       642 I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~-~~~~l~~~~gh~~~i~~v~~s~  718 (793)
T PLN00181        642 VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI-NETPLHSFMGHTNVKNFVGLSV  718 (793)
T ss_pred             EEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc-CCcceEEEcCCCCCeeEEEEcC
Confidence            99999998765677888999999999997 45 589999999999999998642110 0011245668999999999999


Q ss_pred             CCCceEEEEcCCcEEEEE
Q 035558          235 SQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       235 ~~~~~~~~~~~~~i~vw~  252 (253)
                      +++++++++.|+.+++|+
T Consensus       719 ~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        719 SDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CCCEEEEEeCCCEEEEEE
Confidence            999899999999999997

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=213.73  Aligned_cols=224  Identities=17%  Similarity=0.207  Sum_probs=192.5

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +||.+||+|.+  .|+|||..+.    ..++.+++|+     .+|..+.|+|.+...+++|++|+.+++||+.+......
T Consensus        78 ~DG~LlaaGD~sG~V~vfD~k~r----~iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~  148 (487)
T KOG0310|consen   78 SDGRLLAAGDESGHVKVFDMKSR----VILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE  148 (487)
T ss_pred             cCCeEEEccCCcCcEEEeccccH----HHHHHHhhcc-----CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence            57999999986  9999997664    6788899999     99999999988889999999999999999998887668


Q ss_pred             eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           81 LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        81 ~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      +.+|++.|.+.+|+  ++..++||+.||+|++||++....  .+... .|..+|..+.+-| .+..|++++...  +++|
T Consensus       149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~el-nhg~pVe~vl~lp-sgs~iasAgGn~--vkVW  222 (487)
T KOG0310|consen  149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVEL-NHGCPVESVLALP-SGSLIASAGGNS--VKVW  222 (487)
T ss_pred             ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEEe-cCCCceeeEEEcC-CCCEEEEcCCCe--EEEE
Confidence            89999999999999  778999999999999999998852  22222 4556999999999 889999887554  9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      |+-++.+.+..+..|...|+|+++..++ +.|++|+-|+.+++||+.+.+.        .......++|.+++.+|+++.
T Consensus       223 Dl~~G~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv--------v~s~~~~~pvLsiavs~dd~t  293 (487)
T KOG0310|consen  223 DLTTGGQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV--------VHSWKYPGPVLSIAVSPDDQT  293 (487)
T ss_pred             EecCCceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEE--------EEeeecccceeeEEecCCCce
Confidence            9998776666777799999999999998 7999999999999999777552        344567899999999999988


Q ss_pred             eEEEEcCCcEEE
Q 035558          239 WVAIAFSTKLQI  250 (253)
Q Consensus       239 ~~~~~~~~~i~v  250 (253)
                      ++++..+|.+.+
T Consensus       294 ~viGmsnGlv~~  305 (487)
T KOG0310|consen  294 VVIGMSNGLVSI  305 (487)
T ss_pred             EEEecccceeee
Confidence            888888887654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=223.95  Aligned_cols=227  Identities=16%  Similarity=0.262  Sum_probs=194.9

Q ss_pred             CceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----ee
Q 035558            5 PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----VD   78 (253)
Q Consensus         5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~   78 (253)
                      .+.||.+++  .+|+|+..+.    .+ ..+.+|+     ..|.++... .++.+|++|+.|.++++|.++.+.    ++
T Consensus       336 ~~~laVATNs~~lr~y~~~~~----~c-~ii~GH~-----e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~  404 (775)
T KOG0319|consen  336 ESHLAVATNSPELRLYTLPTS----YC-QIIPGHT-----EAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCV  404 (775)
T ss_pred             cceEEEEeCCCceEEEecCCC----ce-EEEeCch-----hheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence            346666665  9999998884    33 3899999     899999944 567899999999999999884432    55


Q ss_pred             eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC--eeeee----ccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           79 TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH--STIIY----ESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ....+|+..|.+++++  ...+|+++|.|+++++|++...+.  .....    ....|...|++++.+| +..++|+|+.
T Consensus       405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~Sq  483 (775)
T KOG0319|consen  405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQ  483 (775)
T ss_pred             hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEeccc
Confidence            5667999999999999  778999999999999999987332  11222    3346778999999999 9999999999


Q ss_pred             CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL  230 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  230 (253)
                      |.. .++|++.... ....+.+|...|.++.|+|.. +.++|+|.|++|+||.+.+.+...       .+.+|...|..+
T Consensus       484 Dkt-aKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSClk-------T~eGH~~aVlra  553 (775)
T KOG0319|consen  484 DKT-AKIWDLEQLR-LLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCLK-------TFEGHTSAVLRA  553 (775)
T ss_pred             ccc-eeeecccCce-EEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceeee-------eecCccceeEee
Confidence            999 9999999654 488999999999999999998 799999999999999999998775       888999999999


Q ss_pred             EEcCCCCceEEEEcCCcEEEEEC
Q 035558          231 QWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|-.+++.+++++.||.+++|++
T Consensus       554 ~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  554 SFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             eeeeCCcEEEeccCCCcEEEEec
Confidence            99999999999999999999985

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.5e-32  Score=217.82  Aligned_cols=231  Identities=21%  Similarity=0.303  Sum_probs=175.9

Q ss_pred             CceEEeecC-cEEEEEccCCcc---------ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558            5 PDLLATSSD-FLRVWRISDEDR---------RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~   74 (253)
                      ..++++..+ ....|+...+..         .......+.+|.     ++|++++|+|.++++|++|+.|++|++||+.+
T Consensus        33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~-----~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~  107 (493)
T PTZ00421         33 SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE-----GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE  107 (493)
T ss_pred             CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC-----CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence            444444445 667787654300         001112467787     89999999955889999999999999999976


Q ss_pred             c-------eeeeeeecccccEEEEEec-C-CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558           75 E-------AVDTQLIAHDKEVYDIAWG-G-VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM  145 (253)
Q Consensus        75 ~-------~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  145 (253)
                      +       +.+..+.+|...|.+++|+ . +++|++++.|++|++||+++++..   .....|...|.+++|+| ++.+|
T Consensus       108 ~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~---~~l~~h~~~V~sla~sp-dG~lL  183 (493)
T PTZ00421        108 EGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV---EVIKCHSDQITSLEWNL-DGSLL  183 (493)
T ss_pred             CccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE---EEEcCCCCceEEEEEEC-CCCEE
Confidence            4       2456788999999999999 5 479999999999999999987633   33345667899999999 99999


Q ss_pred             EEEEeCCCeEEEEECCCCCCCeeeecccccc-eeEEEEecCCCCeEEEec----CCCcEEEEeccCCCCCCCCCCCCeee
Q 035558          146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQAS-VNAIAWAPHSSCHICTAG----DDSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                      ++++.|+. |++||++++. .+..+.+|.+. ...+.|.+++. .+++++    .|+.|++||+++...+.      ...
T Consensus       184 atgs~Dg~-IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~------~~~  254 (493)
T PTZ00421        184 CTTSKDKK-LNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPY------STV  254 (493)
T ss_pred             EEecCCCE-EEEEECCCCc-EEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCce------eEe
Confidence            99999998 9999999866 47778888764 45678999874 555543    58999999999876543      111


Q ss_pred             -ccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          221 -YTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       221 -~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                       ..+...+....|++++..+++++ .|+.|++|++
T Consensus       255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence             23345566778999998777776 5999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-33  Score=227.78  Aligned_cols=231  Identities=14%  Similarity=0.244  Sum_probs=201.4

Q ss_pred             CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      |..+=+|++--. .|++||..-+    .++..+..|.     ++|..++|+ |...++++|++|-.|+||+..+.+++.+
T Consensus        19 P~rPwILtslHsG~IQlWDYRM~----tli~rFdeHd-----GpVRgv~FH-~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen   19 PKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEHD-----GPVRGVDFH-PTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             CCCCEEEEeecCceeeeehhhhh----hHHhhhhccC-----Cccceeeec-CCCCeEEecCCccEEEEEecccceehhh
Confidence            444434444334 9999999998    8999999999     999999999 8899999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|-+.|..+.|+ .-..++++|.|.+|+||+..+.+++..+   .+|...|+|..|+| ...++++++-|.+ |++||
T Consensus        89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhp-tEDlIVSaSLDQT-VRVWD  163 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHP-TEDLIVSASLDQT-VRVWD  163 (1202)
T ss_pred             hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE---ecCceEEEeeccCC-ccceEEEecccce-EEEEe
Confidence            99999999999999 8889999999999999999999865554   46666999999999 8999999999998 99999


Q ss_pred             CCCCCC----------------------------CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC
Q 035558          160 IRFPTL----------------------------PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV  211 (253)
Q Consensus       160 ~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  211 (253)
                      +...++                            ..+.+.+|...|+-++|+|.-+ ++++|+.|..|++|.+...+.  
T Consensus       164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa--  240 (1202)
T KOG0292|consen  164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA--  240 (1202)
T ss_pred             ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc--
Confidence            853211                            1234678999999999999986 999999999999999876552  


Q ss_pred             CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          212 EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                         ++.-...+|.+.|.++-|+|....+++.+.|+.++||+|
T Consensus       241 ---WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  241 ---WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             ---eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence               234577899999999999999888999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-32  Score=193.53  Aligned_cols=232  Identities=17%  Similarity=0.310  Sum_probs=191.3

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc---ee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE---AV   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~   77 (253)
                      |.|++||+++ | ++.||.-..  ..++++.+++||+     ..|.+++|+ +++++||+++.|..|-||.+..+   ++
T Consensus        71 p~g~~La~aSFD~t~~Iw~k~~--~efecv~~lEGHE-----nEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec  142 (312)
T KOG0645|consen   71 PHGRYLASASFDATVVIWKKED--GEFECVATLEGHE-----NEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFEC  142 (312)
T ss_pred             CCCcEEEEeeccceEEEeecCC--CceeEEeeeeccc-----cceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence            5677999999 7 999998775  6788999999999     899999999 99999999999999999998744   37


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ...++.|...|..+.|+ ...+|++++.|.+|++|+-.............+++..|.+++|+| .|..|++++.|+. ++
T Consensus       143 ~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~t-v~  220 (312)
T KOG0645|consen  143 IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGT-VS  220 (312)
T ss_pred             EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcc-eE
Confidence            77889999999999999 889999999999999998875554555666677777999999999 8999999999998 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC-CCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM-GQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      ||-....-     -..|..+++.+.|. ++  .|++++.|+.|++|.-... ..|. ..........|...|++++|.|.
T Consensus       221 Iw~~~~~~-----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~-~~l~~~~~~aHe~dVNsV~w~p~  291 (312)
T KOG0645|consen  221 IWRLYTDL-----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPS-WNLLAKKEGAHEVDVNSVQWNPK  291 (312)
T ss_pred             eeeeccCc-----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCch-HHHHHhhhcccccccceEEEcCC
Confidence            99876321     12367889999999 55  8999999999999977642 1111 00001133468889999999994


Q ss_pred             -CCceEEEEcCCcEEEEEC
Q 035558          236 -QPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       236 -~~~~~~~~~~~~i~vw~l  253 (253)
                       ...+++++.||.+++|++
T Consensus       292 ~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  292 VSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             CCCceeecCCCceEEEEEe
Confidence             456889999999999985

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-33  Score=193.58  Aligned_cols=224  Identities=17%  Similarity=0.173  Sum_probs=189.3

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +|++..+++ + +|++|+...+    .+++++.+|.     ..|..++.+ .+...+++|+.|..+.+||+++++..+.+
T Consensus        28 dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG-----~EVlD~~~s-~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~   97 (307)
T KOG0316|consen   28 DGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHG-----HEVLDAALS-SDNSKFASCGGDKAVQVWDVNTGKVDRRF   97 (307)
T ss_pred             CCCEEEEcCCCceEEeeccccc----ceeeeecCCC-----ceeeecccc-ccccccccCCCCceEEEEEcccCeeeeec
Confidence            567777766 5 9999999988    9999999999     889999998 88999999999999999999999999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      ++|.+.|+.++|+ +...+++|+.|.++++||.++... .++.........|.++..   .+..|++|+.||+ ++.||+
T Consensus        98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v---~~heIvaGS~DGt-vRtydi  172 (307)
T KOG0316|consen   98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDV---AEHEIVAGSVDGT-VRTYDI  172 (307)
T ss_pred             ccccceeeEEEecCcceEEEeccccceeEEEEcccCCC-CccchhhhhcCceeEEEe---cccEEEeeccCCc-EEEEEe
Confidence            9999999999999 999999999999999999998753 233333344458888888   4578999999999 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce--eEEEEcCCCCc
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI--EQLQWSSSQPD  238 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~  238 (253)
                      |.+.. .....  ..+|+++.|++++ +..+.++.|+++++.|-.+++...       ...+|.+.=  ...+++.....
T Consensus       173 R~G~l-~sDy~--g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~-------sYkGhkn~eykldc~l~qsdth  241 (307)
T KOG0316|consen  173 RKGTL-SSDYF--GHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLK-------SYKGHKNMEYKLDCCLNQSDTH  241 (307)
T ss_pred             eccee-ehhhc--CCcceeEEecCCC-CEEEEeeccceeeecccchhHHHH-------Hhcccccceeeeeeeeccccee
Confidence            98764 22233  4689999999999 699999999999999999988654       566775543  44567777778


Q ss_pred             eEEEEcCCcEEEEEC
Q 035558          239 WVAIAFSTKLQILRV  253 (253)
Q Consensus       239 ~~~~~~~~~i~vw~l  253 (253)
                      +++++.||.+.+|+|
T Consensus       242 V~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDL  256 (307)
T ss_pred             EEeccCCceEEEEEe
Confidence            889999999999986

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-32  Score=194.35  Aligned_cols=236  Identities=17%  Similarity=0.226  Sum_probs=199.9

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .+|++|.+++ | +..+|--.++    +.+.++.+|.     +.|.|+..+ .+.+.+++|+.|.++++||+++|+++..
T Consensus        20 ~eGDLlFscaKD~~~~vw~s~nG----erlGty~GHt-----GavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~la~   89 (327)
T KOG0643|consen   20 REGDLLFSCAKDSTPTVWYSLNG----ERLGTYDGHT-----GAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQLAT   89 (327)
T ss_pred             CCCcEEEEecCCCCceEEEecCC----ceeeeecCCC-----ceEEEEEec-CCcceeeeccccceeEEEEcCCCcEEEE
Confidence            3788999998 4 9999988777    8999999999     999999998 8899999999999999999999999998


Q ss_pred             eecccccEEEEEec-CCCeEEEEeC-----CCcEEEEEcCCCC----CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSA-----DGSVRVFDLRDKE----HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i~i~d~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ++ ...+|..+.|+ ++++++.+..     .+.|.++|++...    ...++.....+++.++.+-|.| -+..|++|..
T Consensus        90 ~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe  167 (327)
T KOG0643|consen   90 WK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHE  167 (327)
T ss_pred             ee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecC
Confidence            87 57799999999 8888777654     4679999998432    1223344445567999999999 8999999999


Q ss_pred             CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC--------CC---------
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV--------EG---------  213 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~---------  213 (253)
                      +|. |..||++++.+.+.....|...|+.|+++|+. .++++++.|.+-++||+++.+...        ..         
T Consensus       168 ~G~-is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~  245 (327)
T KOG0643|consen  168 DGS-ISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDH  245 (327)
T ss_pred             CCc-EEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeeecccccceecccccce
Confidence            999 99999999887788888899999999999999 699999999999999998765211        00         


Q ss_pred             -------------------------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          214 -------------------------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       214 -------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                                                     .++.....+|-++|++++|||+|+.+.+++.||.||+..
T Consensus       246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence                                           022334568999999999999999999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.7e-32  Score=197.59  Aligned_cols=228  Identities=16%  Similarity=0.229  Sum_probs=196.8

Q ss_pred             CCCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            1 ECQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         1 sp~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +| +.+++++|++  ...+|++.++    .....+.+|+     ..|+++.|+ .++.+||+|+.+|.|+||+..++...
T Consensus        73 ~P-~~~l~aTGGgDD~AflW~~~~g----e~~~eltgHK-----DSVt~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~~  141 (399)
T KOG0296|consen   73 HP-NNNLVATGGGDDLAFLWDISTG----EFAGELTGHK-----DSVTCCSFS-HDGTLLATGDMSGKVLVFKVSTGGEQ  141 (399)
T ss_pred             CC-CCceEEecCCCceEEEEEccCC----cceeEecCCC-----CceEEEEEc-cCceEEEecCCCccEEEEEcccCceE
Confidence            36 8889999884  9999999998    7888999999     999999999 99999999999999999999999888


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ..+...-..|.=|.|+ .+..|+.|+.||.+.+|.+.++...   ....+|..++++=.|.| +|+.++++..|+. |++
T Consensus       142 ~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgt-i~~  216 (399)
T KOG0296|consen  142 WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIP-DGKRILTGYDDGT-IIV  216 (399)
T ss_pred             EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccC-CCceEEEEecCce-EEE
Confidence            8776556778888999 9999999999999999999986433   33346778999999999 8999999999998 999


Q ss_pred             EECCCCCC------------------------------------------------------------------------
Q 035558          158 LDIRFPTL------------------------------------------------------------------------  165 (253)
Q Consensus       158 ~d~~~~~~------------------------------------------------------------------------  165 (253)
                      ||..+...                                                                        
T Consensus       217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss  296 (399)
T KOG0296|consen  217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS  296 (399)
T ss_pred             EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence            99976532                                                                        


Q ss_pred             ----------------------CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558          166 ----------------------PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA  223 (253)
Q Consensus       166 ----------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (253)
                                            .++..-.|..+|..+.|.+ . .+|++++.+|.|+.||.++++...       ...+|
T Consensus       297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l~~-------~y~GH  367 (399)
T KOG0296|consen  297 KLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQLKF-------TYTGH  367 (399)
T ss_pred             ccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c-chheeeccCceEEeeeccccceEE-------EEecC
Confidence                                  1112224677888899988 4 489999999999999999988665       88899


Q ss_pred             CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...|.+++.+|+.+.+++++.|+..+||++
T Consensus       368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  368 QMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            999999999999999999999999999975

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.7e-32  Score=203.78  Aligned_cols=225  Identities=20%  Similarity=0.369  Sum_probs=195.4

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      .|.+|++++ | ++.+||..++    ...+.+.-|.     .+-..+.|-  +...+++.+.|+.|+|+.+...+++.++
T Consensus       287 ~G~yilS~~vD~ttilwd~~~g----~~~q~f~~~s-----~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~  355 (524)
T KOG0273|consen  287 KGTYILSGGVDGTTILWDAHTG----TVKQQFEFHS-----APALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTF  355 (524)
T ss_pred             CCCEEEeccCCccEEEEeccCc----eEEEeeeecc-----CCccceEEe--cCceEeecCCCceEEEEEecCCCcceee
Confidence            577888888 6 9999999887    7888888887     666789995  5667899999999999999989999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC--------CCCEEEEEEeCC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ--------DPRYMATIIMDS  152 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~l~~~~~~~  152 (253)
                      .+|.++|.+|.|+ .+.+|++++.|++++||.+.....   ......|...|+.+.|+|.        .+..+++++.|+
T Consensus       356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~---~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds  432 (524)
T KOG0273|consen  356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS---VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS  432 (524)
T ss_pred             ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc---hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence            9999999999999 999999999999999999887763   3344566668888888773        456789999999


Q ss_pred             CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      . |++||+..+. ++..+..|..+|++++|+|++ +++++|+.||.|.+|+++.++.        .......+.|..++|
T Consensus       433 t-V~lwdv~~gv-~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l--------~~s~~~~~~Ifel~W  501 (524)
T KOG0273|consen  433 T-VKLWDVESGV-PIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKL--------VKSYQGTGGIFELCW  501 (524)
T ss_pred             e-EEEEEccCCc-eeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchhe--------eEeecCCCeEEEEEE
Confidence            8 9999999866 699999999999999999999 6999999999999999998763        344556778999999


Q ss_pred             cCCCCceEEEEcCCcEEEEEC
Q 035558          233 SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +.+|..+.++..|+.+++.++
T Consensus       502 n~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  502 NAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             cCCCCEEEEEecCCCceEEEe
Confidence            999998889999999998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.5e-31  Score=202.70  Aligned_cols=225  Identities=21%  Similarity=0.360  Sum_probs=190.5

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +++++++++ + .|++|++..+    +....+..|.     ..|.++.|+ +++.++++++.+|.|++||+++++....+
T Consensus        62 ~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~~~~-----~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  131 (289)
T cd00200          62 DGTYLASGSSDKTIRLWDLETG----ECVRTLTGHT-----SYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTL  131 (289)
T ss_pred             CCCEEEEEcCCCeEEEEEcCcc----cceEEEeccC-----CcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence            345666666 5 9999999886    6677777887     789999999 66888888888999999999988888888


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      ..|...+.+++|+ ++.++++++.|+.|++||+++.+....+.   .+...+.++.|+| +++.+++++.++. +++||+
T Consensus       132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~-i~i~d~  206 (289)
T cd00200         132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSP-DGEKLLSSSSDGT-IKLWDL  206 (289)
T ss_pred             ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe---cCccccceEEECC-CcCEEEEecCCCc-EEEEEC
Confidence            8899999999999 88888888889999999999776444333   4555899999999 8888888888888 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      +... .+..+..|...+.+++|+|++ .++++++.||.|++||+.+.....       ....|...|.+++|+|+++.++
T Consensus       207 ~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~  277 (289)
T cd00200         207 STGK-CLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQ-------TLSGHTNSVTSLAWSPDGKRLA  277 (289)
T ss_pred             CCCc-eecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEE-------EccccCCcEEEEEECCCCCEEE
Confidence            8755 367777888899999999997 688888889999999998755332       4457888999999999998899


Q ss_pred             EEEcCCcEEEEE
Q 035558          241 AIAFSTKLQILR  252 (253)
Q Consensus       241 ~~~~~~~i~vw~  252 (253)
                      +++.|+.+++|+
T Consensus       278 ~~~~d~~i~iw~  289 (289)
T cd00200         278 SGSADGTIRIWD  289 (289)
T ss_pred             EecCCCeEEecC
Confidence            999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.4e-31  Score=204.98  Aligned_cols=233  Identities=18%  Similarity=0.236  Sum_probs=188.5

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccccceeeeec---CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLN---GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE   75 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   75 (253)
                      ||+ |.++++++ | ++.+||=.++    +.+..+.   +|+     +.|.+++|+ |++..+++++.|.+++|||+.+.
T Consensus       199 sPD-G~~Fat~gsDgki~iyDGktg----e~vg~l~~~~aHk-----GsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~  267 (603)
T KOG0318|consen  199 SPD-GSRFATAGSDGKIYIYDGKTG----EKVGELEDSDAHK-----GSIFALSWS-PDSTQFLTVSADKTIKIWDVSTN  267 (603)
T ss_pred             CCC-CCeEEEecCCccEEEEcCCCc----cEEEEecCCCCcc-----ccEEEEEEC-CCCceEEEecCCceEEEEEeecc
Confidence            355 66666655 7 9999999888    7777777   777     999999999 89999999999999999999874


Q ss_pred             ee-------------------------------------------eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEE
Q 035558           76 AV-------------------------------------------DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVF  111 (253)
Q Consensus        76 ~~-------------------------------------------~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~  111 (253)
                      ++                                           ...+.+|...|+++..+ ++.+|++|+.||.|.-|
T Consensus       268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence            32                                           23356899999999999 99999999999999999


Q ss_pred             EcCCCCCeeee-----------eccC------------------------C-----------------------------
Q 035558          112 DLRDKEHSTII-----------YESS------------------------E-----------------------------  127 (253)
Q Consensus       112 d~~~~~~~~~~-----------~~~~------------------------~-----------------------------  127 (253)
                      |..++..-+..           ....                        .                             
T Consensus       348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            98765311000           0000                        0                             


Q ss_pred             --------------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEE
Q 035558          128 --------------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       128 --------------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~  192 (253)
                                    ..-...+++++| +++.+++|+.|+. |++|.+.... .....+..|.++|+.++|+|++ .+|++
T Consensus       428 iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~  504 (603)
T KOG0318|consen  428 IVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAA  504 (603)
T ss_pred             EEEEecCCcceeeccccccceEEEcC-CCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEE
Confidence                          011345678888 9999999999999 9999998755 3345667799999999999999 69999


Q ss_pred             ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +...+.+.+||+.+.+...      ....-|..+|.+++|+|+..++++++.|..|.||+|
T Consensus       505 ~Da~rkvv~yd~~s~~~~~------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  505 GDASRKVVLYDVASREVKT------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             eccCCcEEEEEcccCceec------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence            9999999999999877432      233349999999999999998889999999999986

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=208.75  Aligned_cols=230  Identities=19%  Similarity=0.259  Sum_probs=199.3

Q ss_pred             CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ||+.+.-+|+++. .+.+|+..+.    ...+++...+     ..+.+++|. .+|.++++|+..|.|+|+|..+...+.
T Consensus        35 sp~~P~d~aVt~S~rvqly~~~~~----~~~k~~srFk-----~~v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   35 SPKHPYDFAVTSSVRVQLYSSVTR----SVRKTFSRFK-----DVVYSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             CCCCCCceEEecccEEEEEecchh----hhhhhHHhhc-----cceeEEEee-cCCeEEEccCCcCcEEEeccccHHHHH
Confidence            5777877777777 9999999886    5566565555     789999999 999999999999999999977766788


Q ss_pred             eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+.+|+.++..+.|+  ++..|++|+.|+.+++||+.+..   ......+|+..|.+.+|+|.++..+++|++||. |++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~-vrl  180 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGSYDGK-VRL  180 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecCCCce-EEE
Confidence            899999999999999  88899999999999999999887   355667888899999999988889999999999 999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ||++.....+.++. |..+|..+.+-|.| ..+++++ ...++|||+.++.+..      .....|...|+++.+..++.
T Consensus       181 ~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~qll------~~~~~H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  181 WDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQLL------TSMFNHNKTVTCLRLASDST  251 (487)
T ss_pred             EEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCceeh------hhhhcccceEEEEEeecCCc
Confidence            99998765455554 89999999999998 5888877 5689999999777554      35556999999999999999


Q ss_pred             ceEEEEcCCcEEEEEC
Q 035558          238 DWVAIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~l  253 (253)
                      .|++++-|+.+++|++
T Consensus       252 rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  252 RLLSGSLDRHVKVFDT  267 (487)
T ss_pred             eEeecccccceEEEEc
Confidence            9999999999999973

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-32  Score=189.11  Aligned_cols=237  Identities=20%  Similarity=0.298  Sum_probs=191.6

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec-CCCCCEEEEEeCCCeEEEEeccCce--eee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN-EAEPRRIGTSSIDTTCTIWDIEREA--VDT   79 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~--~~~   79 (253)
                      |..|||++ | +|+|+....+ .+.+++.++.+|.     +||..++|. |.-|.+||+++.||.|.||.-+.++  ...
T Consensus        23 gkrlATcsSD~tVkIf~v~~n-~~s~ll~~L~Gh~-----GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~   96 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNN-GQSKLLAELTGHS-----GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY   96 (299)
T ss_pred             cceeeeecCCccEEEEEEcCC-CCceeeeEecCCC-----CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence            56788876 6 9999999886 5568899999999     999999995 4579999999999999999998885  344


Q ss_pred             eeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC--C-----------C
Q 035558           80 QLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD--P-----------R  143 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~-----------~  143 (253)
                      ....|...|++++|.   -+-.|++++.||.|.+.+.+.............|+-.|++++|.|..  +           +
T Consensus        97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k  176 (299)
T KOG1332|consen   97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK  176 (299)
T ss_pred             hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence            556899999999998   56789999999999999998773333333445677799999999842  2           4


Q ss_pred             EEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCC---CCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558          144 YMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHS---SCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      .|++|+.|.. |+||+..... .....+.+|.+.|..++|.|.-   ..+++++++||++.||-.+....+    .....
T Consensus       177 rlvSgGcDn~-VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~----wk~tl  251 (299)
T KOG1332|consen  177 RLVSGGCDNL-VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP----WKKTL  251 (299)
T ss_pred             eeeccCCccc-eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc----ccccc
Confidence            6999999998 9999998754 2234589999999999999964   238999999999999987743222    22334


Q ss_pred             eccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +......+.++.||+.|..|..++.|+.+.+|+
T Consensus       252 l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  252 LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             cccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            455678899999999998777788899999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-32  Score=218.57  Aligned_cols=230  Identities=16%  Similarity=0.206  Sum_probs=198.8

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +...++++|+|  .|++|++...    +++.++.+|-     +.|..+.|+ +.-.+++++|+|.+|+||+.++.+++..
T Consensus        61 ~~qplFVSGGDDykIkVWnYk~r----rclftL~GHl-----DYVRt~~FH-heyPWIlSASDDQTIrIWNwqsr~~iav  130 (1202)
T KOG0292|consen   61 PTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHL-----DYVRTVFFH-HEYPWILSASDDQTIRIWNWQSRKCIAV  130 (1202)
T ss_pred             CCCCeEEecCCccEEEEEecccc----eehhhhcccc-----ceeEEeecc-CCCceEEEccCCCeEEEEeccCCceEEE
Confidence            34568888886  9999999998    9999999999     899999999 8899999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC--------------------------eeeeeccCCCCCCee
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH--------------------------STIIYESSEPDTPLV  133 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--------------------------~~~~~~~~~~~~~i~  133 (253)
                      +.+|...|.|.+|+ ..++++++|-|.+||+||+..-+.                          ..+.....+|...|+
T Consensus       131 ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN  210 (1202)
T KOG0292|consen  131 LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN  210 (1202)
T ss_pred             EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc
Confidence            99999999999999 899999999999999999964221                          011223456778999


Q ss_pred             EEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC
Q 035558          134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE  212 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  212 (253)
                      .++|+| .-.+|++|+.|.. |++|.+...+ -.+.+..+|...|.++-|+|.. .++++.|+|++|+|||+....... 
T Consensus       211 waAfhp-TlpliVSG~DDRq-VKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~-  286 (1202)
T KOG0292|consen  211 WAAFHP-TLPLIVSGADDRQ-VKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQ-  286 (1202)
T ss_pred             eEEecC-CcceEEecCCcce-eeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEeccccccee-
Confidence            999999 8889999888887 9999987644 2267788999999999999988 499999999999999999876544 


Q ss_pred             CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          213 GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                            .+.....+.+.++-+|..+ +++++.|+.+.||++
T Consensus       287 ------tfrrendRFW~laahP~lN-LfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  287 ------TFRRENDRFWILAAHPELN-LFAAGHDSGMIVFKL  320 (1202)
T ss_pred             ------eeeccCCeEEEEEecCCcc-eeeeecCCceEEEEE
Confidence                  5556678899999999986 888889999988874

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=6.5e-31  Score=212.89  Aligned_cols=216  Identities=16%  Similarity=0.227  Sum_probs=166.2

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--------eeeeeeccc
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--------VDTQLIAHD   85 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~   85 (253)
                      .|++|+....    ..+..+.+|.     ++|.+++|+|.++++|++|+.||+|++||+.++.        .+..+.+|.
T Consensus        55 vI~L~~~~r~----~~v~~L~gH~-----~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         55 AIRLENQMRK----PPVIKLKGHT-----SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             EEEeeecCCC----ceEEEEcCCC-----CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence            6777776554    5677889998     8999999995558999999999999999997542        234577899


Q ss_pred             ccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558           86 KEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP  163 (253)
Q Consensus        86 ~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  163 (253)
                      ..|.+++|+ ++. ++++++.|++|++||+++++....+.    +...|.+++|+| ++.+|++++.|+. |++||++++
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~-IrIwD~Rsg  199 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKH-MHIIDPRKQ  199 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCE-EEEEECCCC
Confidence            999999999 665 56799999999999999887433321    234899999999 8999999998888 999999986


Q ss_pred             CCCeeeecccccceeEE-----EEecCCCCeEEEecCCC----cEEEEeccCCCCCCCCCCCCeeecc---CCCceeEEE
Q 035558          164 TLPVVELQRHQASVNAI-----AWAPHSSCHICTAGDDS----QALIWDLSSMGQPVEGGLDPILAYT---AGAEIEQLQ  231 (253)
Q Consensus       164 ~~~~~~~~~~~~~i~~~-----~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~  231 (253)
                      . .+..+.+|.+.+.+.     .|++++ .+|++++.|+    .|+|||++....+.       ....   +.+.+....
T Consensus       200 ~-~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl-------~~~~ld~~~~~L~p~~  270 (568)
T PTZ00420        200 E-IASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSAL-------VTMSIDNASAPLIPHY  270 (568)
T ss_pred             c-EEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCce-------EEEEecCCccceEEee
Confidence            6 477888898765433     345787 5888877664    79999999765543       2222   233333444


Q ss_pred             EcCCCCceEEEEcCCcEEEEEC
Q 035558          232 WSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..+++..+++++.|+.|++|++
T Consensus       271 D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        271 DESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             eCCCCCEEEEEECCCeEEEEEc
Confidence            4556777778999999999985

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.8e-33  Score=204.17  Aligned_cols=224  Identities=17%  Similarity=0.258  Sum_probs=190.1

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---ee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VD   78 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~   78 (253)
                      +.+++++|+ | +|++||++++    +++.++-+|.     ..|..+.|+   ..++++++.|.++.+||+....   +.
T Consensus       246 d~rviisGSSDsTvrvWDv~tg----e~l~tlihHc-----eaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~r  313 (499)
T KOG0281|consen  246 DERVIVSGSSDSTVRVWDVNTG----EPLNTLIHHC-----EAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLR  313 (499)
T ss_pred             cceEEEecCCCceEEEEeccCC----chhhHHhhhc-----ceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHH
Confidence            445778877 5 9999999999    9999999999     899999998   6799999999999999998665   45


Q ss_pred             eeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           79 TQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      ..+.+|...|+.+.|+ .+++++++.|.+|++|++.+.+.+   ....+|...|.|+.+   .++++++|+.|.+ |++|
T Consensus       314 rVLvGHrAaVNvVdfd-~kyIVsASgDRTikvW~~st~efv---Rtl~gHkRGIAClQY---r~rlvVSGSSDnt-IRlw  385 (499)
T KOG0281|consen  314 RVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWSTSTCEFV---RTLNGHKRGIACLQY---RDRLVVSGSSDNT-IRLW  385 (499)
T ss_pred             HHHhhhhhheeeeccc-cceEEEecCCceEEEEeccceeee---hhhhcccccceehhc---cCeEEEecCCCce-EEEE
Confidence            5677999999999995 669999999999999999999844   444567778888887   6789999999998 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCC--CCeeeccCCCceeEEEEcCCC
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL--DPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      |+..+. ++..+++|+.-|.++.|..   +.+++|+.||+|++||+.....|.....  .......|.+.|..++|... 
T Consensus       386 di~~G~-cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-  460 (499)
T KOG0281|consen  386 DIECGA-CLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-  460 (499)
T ss_pred             eccccH-HHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-
Confidence            999876 5899999999999999974   4799999999999999998876642111  12345578999999999654 


Q ss_pred             CceEEEEcCCcEEEEEC
Q 035558          237 PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~~~~~i~vw~l  253 (253)
                       .+++++.|..|-||+.
T Consensus       461 -qIvsssHddtILiWdF  476 (499)
T KOG0281|consen  461 -QIISSSHDDTILIWDF  476 (499)
T ss_pred             -EEEeccCCCeEEEEEc
Confidence             6999999999999984

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-32  Score=187.83  Aligned_cols=202  Identities=21%  Similarity=0.269  Sum_probs=182.6

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG  106 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg  106 (253)
                      +...++..++     ++|..+.|+ .++++.++++.|.+|++|+...+.+++++.+|..+|.+++.+ ++..|++|+.|.
T Consensus         8 kr~~~l~~~q-----gaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen    8 KRLSILDCAQ-----GAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             hhceeecccc-----cceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc
Confidence            4566778888     999999999 999999999999999999999999999999999999999999 999999999999


Q ss_pred             cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecC
Q 035558          107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPH  185 (253)
Q Consensus       107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~  185 (253)
                      .+.+||+.+++   ......+|.+.|+.++|+. +...+++|+.|.. +++||.|+.. +|++.+..-...|.++.... 
T Consensus        82 ~v~vwDV~TGk---v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s-~r~wDCRS~s~ePiQildea~D~V~Si~v~~-  155 (307)
T KOG0316|consen   82 AVQVWDVNTGK---VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSS-VRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-  155 (307)
T ss_pred             eEEEEEcccCe---eeeecccccceeeEEEecC-cceEEEeccccce-eEEEEcccCCCCccchhhhhcCceeEEEecc-
Confidence            99999999998   5666678888999999998 8899999999998 9999999865 67888888888999998874 


Q ss_pred             CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                        +.+++|+.||+++.||++.+..         ...-.+.||+++.|+++++..++++.|+.+++.+
T Consensus       156 --heIvaGS~DGtvRtydiR~G~l---------~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  156 --HEIVAGSVDGTVRTYDIRKGTL---------SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD  211 (307)
T ss_pred             --cEEEeeccCCcEEEEEeeccee---------ehhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence              5799999999999999999873         3334567999999999999999999999999875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-32  Score=210.85  Aligned_cols=224  Identities=19%  Similarity=0.267  Sum_probs=191.1

Q ss_pred             CceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeee
Q 035558            5 PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~   81 (253)
                      .+.+++|+|  .||||++++.    +.+..+.+|.     +.|.+++.+ |...+++++++|-+|++||.+.. .+.+++
T Consensus        67 knWiv~GsDD~~IrVfnynt~----ekV~~FeAH~-----DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~wa~~qtf  136 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNTG----EKVKTFEAHS-----DYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENEWACEQTF  136 (794)
T ss_pred             cceEEEecCCceEEEEecccc----eeeEEeeccc-----cceeeeeec-CCCCeEEecCCccEEEEeeccCceeeeeEE
Confidence            467889986  9999999998    9999999999     899999999 78889999999999999999865 578899


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVL  158 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~  158 (253)
                      .+|..-|.+++|+  |.+.|++++-|++|++|.+.+..+.   +...+|+..|+++.+-+.. ..++++|+.|.. +++|
T Consensus       137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n---fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvW  212 (794)
T KOG0276|consen  137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN---FTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVW  212 (794)
T ss_pred             cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc---eeeeccccCcceEEeccCCCcceEEecCCCce-EEEe
Confidence            9999999999999  9999999999999999999988743   3345888899999998732 358999888887 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      |.++.. +++++.+|...|..+.|+|.-+ .+++||+||+++||+..+.+...       .+.-...++++++-.+.+. 
T Consensus       213 DyQtk~-CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~-------tLn~gleRvW~I~~~k~~~-  282 (794)
T KOG0276|consen  213 DYQTKS-CVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK-------TLNYGLERVWCIAAHKGDG-  282 (794)
T ss_pred             ecchHH-HHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh-------hhhcCCceEEEEeecCCCC-
Confidence            999854 7999999999999999999996 99999999999999998876443       4444567899999888776 


Q ss_pred             eEEEEcCCcEEEEE
Q 035558          239 WVAIAFSTKLQILR  252 (253)
Q Consensus       239 ~~~~~~~~~i~vw~  252 (253)
                      .++.|.|....+.+
T Consensus       283 ~i~vG~Deg~i~v~  296 (794)
T KOG0276|consen  283 KIAVGFDEGSVTVK  296 (794)
T ss_pred             eEEEeccCCcEEEE
Confidence            45666665554443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-31  Score=209.97  Aligned_cols=233  Identities=22%  Similarity=0.327  Sum_probs=199.4

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .+.||.+.+ .|++|+...+    +.......+.     ..|+++.|+ +++++|++|..+|.|.|||.+..+.+..+.+
T Consensus       188 ~n~laValg~~vylW~~~s~----~v~~l~~~~~-----~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  188 ANVLAVALGQSVYLWSASSG----SVTELCSFGE-----ELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             CCeEEEEecceEEEEecCCC----ceEEeEecCC-----CceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccccC
Confidence            457888888 9999999886    4444444445     789999999 9999999999999999999999999999998


Q ss_pred             -ccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558           84 -HDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus        84 -~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                       |...|-+++|+ +..+.+|+.|+.|..+|++..+....  ....|...|+.++|++ ++.++|+|+.|+. +.|||...
T Consensus       258 ~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~-d~~~lASGgnDN~-~~Iwd~~~  332 (484)
T KOG0305|consen  258 SHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSP-DGNQLASGGNDNV-VFIWDGLS  332 (484)
T ss_pred             CcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECC-CCCeeccCCCccc-eEeccCCC
Confidence             99999999996 88999999999999999998874333  3567888999999999 9999999999999 99999965


Q ss_pred             CCCCeeeecccccceeEEEEecCCCCeEEEec--CCCcEEEEeccCCCCCCC----------------------------
Q 035558          163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAG--DDSQALIWDLSSMGQPVE----------------------------  212 (253)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~----------------------------  212 (253)
                      . .+...+..|.+.|.+++|+|....+||+|+  .|++|++||..++.....                            
T Consensus       333 ~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n  411 (484)
T KOG0305|consen  333 P-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN  411 (484)
T ss_pred             c-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCC
Confidence            4 468899999999999999998767999877  799999999987652210                            


Q ss_pred             --------CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          213 --------GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       213 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                              .......+.+|..+|..++++|+|..+++++.|.++++|++
T Consensus       412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence                    00123456689999999999999999999999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.4e-30  Score=198.50  Aligned_cols=226  Identities=22%  Similarity=0.354  Sum_probs=188.7

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++++|++++ + .+++|++...    +....+..|.     ..+..+.|+ ++++.+++++.+|.|++|+++.++....+
T Consensus        20 ~~~~l~~~~~~g~i~i~~~~~~----~~~~~~~~~~-----~~i~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~~~~~   89 (289)
T cd00200          20 DGKLLATGSGDGTIKVWDLETG----ELLRTLKGHT-----GPVRDVAAS-ADGTYLASGSSDKTIRLWDLETGECVRTL   89 (289)
T ss_pred             CCCEEEEeecCcEEEEEEeeCC----CcEEEEecCC-----cceeEEEEC-CCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence            466777777 5 9999999886    5677788888     788899999 77889999999999999999988888888


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      ..|...+.++.|+ ++.++++++.||.+++||+++.+....+   ..+...+.+++|+| ++.++++++.++. |++||+
T Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~~l~~~~~~~~-i~i~d~  164 (289)
T cd00200          90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL---RGHTDWVNSVAFSP-DGTFVASSSQDGT-IKLWDL  164 (289)
T ss_pred             eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe---ccCCCcEEEEEEcC-cCCEEEEEcCCCc-EEEEEc
Confidence            8899999999999 8788888888999999999976533333   35566899999999 6888888777888 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      +..+ ++..+..|...+.+++|+|++ ..+++++.|+.|++||++......       ....|...+.+++|+|++..++
T Consensus       165 ~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         165 RTGK-CVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLG-------TLRGHENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             cccc-cceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCceec-------chhhcCCceEEEEEcCCCcEEE
Confidence            8755 477777888899999999998 588888889999999998755332       3447888999999999976555


Q ss_pred             EEEcCCcEEEEEC
Q 035558          241 AIAFSTKLQILRV  253 (253)
Q Consensus       241 ~~~~~~~i~vw~l  253 (253)
                      +++.++.+++|++
T Consensus       236 ~~~~~~~i~i~~~  248 (289)
T cd00200         236 SGSEDGTIRVWDL  248 (289)
T ss_pred             EEcCCCcEEEEEc
Confidence            6666999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.2e-31  Score=210.10  Aligned_cols=233  Identities=18%  Similarity=0.217  Sum_probs=193.7

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +||.++|+|++  +|+|||...+    -+..++..|+     ..|+.+.|+ ..++.+++.+.||+|+.||+...+..++
T Consensus       360 pDgq~iaTG~eDgKVKvWn~~Sg----fC~vTFteHt-----s~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrNfRT  429 (893)
T KOG0291|consen  360 PDGQLIATGAEDGKVKVWNTQSG----FCFVTFTEHT-----SGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRNFRT  429 (893)
T ss_pred             CCCcEEEeccCCCcEEEEeccCc----eEEEEeccCC-----CceEEEEEE-ecCCEEEEeecCCeEEeeeecccceeee
Confidence            67889999985  9999999998    9999999999     999999999 9999999999999999999999988888


Q ss_pred             eecccccE--EEEEec-CCCeEEEEeCCCc-EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           81 LIAHDKEV--YDIAWG-GVGVFASVSADGS-VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        81 ~~~~~~~v--~~~~~~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      +.. +.++  .+++.. .|.++..|+.|.. |.+|++.+++   .+....+|+++|.+++|+| .+..|++++.|.+ |+
T Consensus       430 ft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---llDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkT-VR  503 (893)
T KOG0291|consen  430 FTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---LLDILSGHEGPVSGLSFSP-DGSLLASGSWDKT-VR  503 (893)
T ss_pred             ecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---eeehhcCCCCcceeeEEcc-ccCeEEeccccce-EE
Confidence            874 3344  455665 6888888888764 9999999998   4555678999999999999 9999999999999 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC-----------CCC--eeeccC
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG-----------LDP--ILAYTA  223 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~--~~~~~~  223 (253)
                      +||+-.....+.++. +...+..++|.|+| ..|+++..||.|.+||.....+.....           ...  ......
T Consensus       504 iW~if~s~~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~  581 (893)
T KOG0291|consen  504 IWDIFSSSGTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK  581 (893)
T ss_pred             EEEeeccCceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence            999977654344444 57789999999999 699999999999999998765432100           000  011123


Q ss_pred             CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ....+.+++++||..++|+|..+.|.++++
T Consensus       582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  582 GKTFTTICYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             CCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence            578899999999999999999999999975

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.4e-32  Score=193.09  Aligned_cols=207  Identities=16%  Similarity=0.222  Sum_probs=176.9

Q ss_pred             cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc-CceeeeeeecccccEEEEEec-CCCeEEEEeC
Q 035558           27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQLIAHDKEVYDIAWG-GVGVFASVSA  104 (253)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~  104 (253)
                      ..+...+.+|+     +.|+.+.|+ |++.+|++|+.|..|.+|++. ..+....+++|.+.|..+.|. +++.+++++.
T Consensus        37 ~ap~m~l~gh~-----geI~~~~F~-P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   37 QAPIMLLPGHK-----GEIYTIKFH-PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             cchhhhcCCCc-----ceEEEEEEC-CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC
Confidence            35566778898     999999999 699999999999999999954 445677888999999999999 9999999999


Q ss_pred             CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec
Q 035558          105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP  184 (253)
Q Consensus       105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~  184 (253)
                      |.+++.||.++++   .++....|...++++.-+.....++.+++.|++ +++||+|+.. +++.+. ....++++.|..
T Consensus       111 Dk~v~~wD~~tG~---~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t-~kl~D~R~k~-~~~t~~-~kyqltAv~f~d  184 (338)
T KOG0265|consen  111 DKTVRGWDAETGK---RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT-LKLWDIRKKE-AIKTFE-NKYQLTAVGFKD  184 (338)
T ss_pred             CceEEEEecccce---eeehhccccceeeecCccccCCeEEEecCCCce-EEEEeecccc-hhhccc-cceeEEEEEecc
Confidence            9999999999998   456666777788888855533455556666666 9999999754 455554 356789999999


Q ss_pred             CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          185 HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .++ .+.+|+-|+.|++||++......       .+.+|..+|+.+..+|+|.++++-+.|+.+++|++
T Consensus       185 ~s~-qv~sggIdn~ikvWd~r~~d~~~-------~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  185 TSD-QVISGGIDNDIKVWDLRKNDGLY-------TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             ccc-ceeeccccCceeeeccccCcceE-------EeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence            984 89999999999999999887654       88999999999999999999999999999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-32  Score=217.96  Aligned_cols=228  Identities=21%  Similarity=0.402  Sum_probs=194.8

Q ss_pred             CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ..++||+++.  .|.+||+... ...+.+..+..|+     ..++++.|++....+|++|+.||.|++||++..+...++
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~-~rnk~l~~f~EH~-----Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~  172 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKS-IRNKLLTVFNEHE-----RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF  172 (839)
T ss_pred             hhhhheeecCCCcEEEEecCcc-ccchhhhHhhhhc-----cceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence            3568899885  9999999873 2236677889999     899999999888999999999999999999999999999


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      .+....|++++|+  .+.+|+++.+.|.+++||+|...  +.......|.++|.++.|+| ++.+||+||.|+. |+|||
T Consensus       173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~-vkiWd  248 (839)
T KOG0269|consen  173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD--RCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKM-VKIWD  248 (839)
T ss_pred             cccchhhhceeeccCCCceEEEecCCceEEEeeccCch--hHHHHhhcccCceEEEeecC-CCceeeecCCCcc-EEEEe
Confidence            9888999999999  89999999999999999999887  34455668899999999999 9999999999999 99999


Q ss_pred             CCCCC-CCeeeecccccceeEEEEecCCCCeEEEec--CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          160 IRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAG--DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       160 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      +.... .++..+. -..++.+++|-|.....|++++  .|-.|+|||++.+..|.      ..+..|...++.++|....
T Consensus       249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~------~t~~eH~~~vt~i~W~~~d  321 (839)
T KOG0269|consen  249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY------ATFLEHTDSVTGIAWDSGD  321 (839)
T ss_pred             ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc------eeeeccCccccceeccCCC
Confidence            98654 3334443 3568999999999877888887  58999999999998887      6788899999999997644


Q ss_pred             C-ceEEEEcCCcE
Q 035558          237 P-DWVAIAFSTKL  248 (253)
Q Consensus       237 ~-~~~~~~~~~~i  248 (253)
                      . .+.+++.|+.+
T Consensus       322 ~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  322 RINLWSCSKDGTV  334 (839)
T ss_pred             ceeeEeecCccHH
Confidence            3 34578888765

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.5e-32  Score=208.16  Aligned_cols=213  Identities=15%  Similarity=0.170  Sum_probs=180.0

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD  105 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  105 (253)
                      +.+.++.+|.     ..|+++.|.|..+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+ ++..|++++.|
T Consensus       205 k~~~~~~gH~-----kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  205 KLSHNLSGHT-----KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             hheeeccCCc-----cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            5567788998     89999999977999999999999999999977 78999999999999999999 99999999999


Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH  185 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  185 (253)
                      +.|++||.+++++...+..    ...++++.|+|++.+.+++|+.|+. |+.||+|+++. ++++..|-+.|..+.|-++
T Consensus       280 ~~lKlwDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~k-i~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKK-IRQWDIRSGKV-VQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             eeeeeeccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCc-EEEEeccchHH-HHHHHhhhhheeeeEEccC
Confidence            9999999999985544432    2378999999966699999999999 99999999774 8889999999999999999


Q ss_pred             CCCeEEEecCCCcEEEEeccCCCCCCCCC---------------------------------------CCCeeeccC--C
Q 035558          186 SSCHICTAGDDSQALIWDLSSMGQPVEGG---------------------------------------LDPILAYTA--G  224 (253)
Q Consensus       186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------------------~~~~~~~~~--~  224 (253)
                      + +.+++.++|++++||+.+.+-......                                       .....+.+|  .
T Consensus       354 g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va  432 (503)
T KOG0282|consen  354 G-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA  432 (503)
T ss_pred             C-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence            9 699999999999999987653111000                                       000122234  3


Q ss_pred             CceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          225 AEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +.-..+.|||+|++++++..+|.+.+|+
T Consensus       433 Gys~~v~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             CceeeEEEcCCCCeEEeecCCccEEEee
Confidence            4457789999999999999999999997

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.4e-31  Score=201.38  Aligned_cols=204  Identities=19%  Similarity=0.378  Sum_probs=177.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----------eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----------VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRV  110 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i  110 (253)
                      +.|+.+.+.|.+...+++++..+.|+|||.....          +-..+.+|...-++|+|+  ....+++++.|++|++
T Consensus       125 gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~l  204 (422)
T KOG0264|consen  125 GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICL  204 (422)
T ss_pred             ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEE
Confidence            8899999998999999999999999999986532          122678999888999999  7779999999999999


Q ss_pred             EEcCCCCC----eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC-CCCCeeeecccccceeEEEEecC
Q 035558          111 FDLRDKEH----STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF-PTLPVVELQRHQASVNAIAWAPH  185 (253)
Q Consensus       111 ~d~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~  185 (253)
                      ||+.....    ........+|+..|..++|+|.+..+|++++.|+. +.|||+|+ ..++.....+|.+.|++++|+|.
T Consensus       205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~-L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~  283 (422)
T KOG0264|consen  205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK-LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF  283 (422)
T ss_pred             EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe-EEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence            99987643    33444556888899999999999999999999998 99999996 34567788899999999999998


Q ss_pred             CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      ++..||+||.|++|++||+++...+.      ..+.+|...|..|.|+|....++ +++.|+.+.||++
T Consensus       284 ~~~ilAT~S~D~tV~LwDlRnL~~~l------h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  284 NEFILATGSADKTVALWDLRNLNKPL------HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             CCceEEeccCCCcEEEeechhcccCc------eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            88899999999999999999998765      78889999999999999876655 6788999999986

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.3e-32  Score=215.13  Aligned_cols=235  Identities=18%  Similarity=0.372  Sum_probs=190.0

Q ss_pred             ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC---ceeeeee
Q 035558            6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER---EAVDTQL   81 (253)
Q Consensus         6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~   81 (253)
                      .-++.++. .++||.++......++...++... ..+ ..+..+.|+....++||+++..|.|.+||+..   .+.+..+
T Consensus        52 ~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kq-n~~-~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f  129 (839)
T KOG0269|consen   52 NQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQ-NKF-YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF  129 (839)
T ss_pred             ceeEEecccceeeEeeCcccCCcceeeeccccc-cee-eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh
Confidence            34566666 888998876533333333332221 111 46678889867789999999999999999986   5677788


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ..|+..++++.|+  ...+|++|++||+|++||++..+.......   ....|..++|+|..++.|+++...|. +.+||
T Consensus       130 ~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWD  205 (839)
T KOG0269|consen  130 NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKFSPGYGNKFASIHDSGY-LQLWD  205 (839)
T ss_pred             hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceeeccCCCceEEEecCCce-EEEee
Confidence            9999999999999  899999999999999999998875444433   33489999999988889998887777 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      +|...++...+.+|.++|.++.|+|++ .+|||||.|+.|+|||+......      +........+|.+|.|-|..++.
T Consensus       206 lRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~------~~~tInTiapv~rVkWRP~~~~h  278 (839)
T KOG0269|consen  206 LRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAK------PKHTINTIAPVGRVKWRPARSYH  278 (839)
T ss_pred             ccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCcc------ceeEEeecceeeeeeeccCccch
Confidence            999999899999999999999999988 59999999999999999875532      24555668899999999999887


Q ss_pred             EE---EEcCCcEEEEEC
Q 035558          240 VA---IAFSTKLQILRV  253 (253)
Q Consensus       240 ~~---~~~~~~i~vw~l  253 (253)
                      ++   ...|-.|+||++
T Consensus       279 LAtcsmv~dtsV~VWDv  295 (839)
T KOG0269|consen  279 LATCSMVVDTSVHVWDV  295 (839)
T ss_pred             hhhhhccccceEEEEee
Confidence            74   345778999986

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.6e-30  Score=206.75  Aligned_cols=218  Identities=15%  Similarity=0.254  Sum_probs=167.2

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE   75 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   75 (253)
                      +|.++.+|++++ | +|++||+....   .....+..+.+|.     ..|.+++|+|...++|++|+.|++|++||++++
T Consensus        84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg  158 (493)
T PTZ00421         84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVLASAGADMVVNVWDVERG  158 (493)
T ss_pred             cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC
Confidence            466778888888 5 99999997641   1123567788998     899999999545679999999999999999999


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC-CeeEEEeeCCCCCEEEEEEe---
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-PLVRLGWNKQDPRYMATIIM---  150 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~---  150 (253)
                      +.+..+.+|...|.+++|+ ++.+|++++.|++|++||+++++....+   ..|.+ ....+.|.+ ++..+++++.   
T Consensus       159 ~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl---~~H~~~~~~~~~w~~-~~~~ivt~G~s~s  234 (493)
T PTZ00421        159 KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV---EAHASAKSQRCLWAK-RKDLIITLGCSKS  234 (493)
T ss_pred             eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE---ecCCCCcceEEEEcC-CCCeEEEEecCCC
Confidence            9888899999999999999 9999999999999999999988743333   23332 345678888 6666666553   


Q ss_pred             -CCCeEEEEECCCCCCCeeeecccc-cceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          151 -DSAKVVVLDIRFPTLPVVELQRHQ-ASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       151 -~~~~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                       ++. |++||+++...++.....+. ..+....|++++ .+|++++ .|+.|++||+.++....      .....+..++
T Consensus       235 ~Dr~-VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~------~~~~~s~~~~  306 (493)
T PTZ00421        235 QQRQ-IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLTF------CSSYSSVEPH  306 (493)
T ss_pred             CCCe-EEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceEE------EeeccCCCCC
Confidence             455 99999998776665554333 456667889998 5787776 59999999999865322      2233456678


Q ss_pred             eEEEEcCC
Q 035558          228 EQLQWSSS  235 (253)
Q Consensus       228 ~~~~~~~~  235 (253)
                      ..++|.|.
T Consensus       307 ~g~~~~pk  314 (493)
T PTZ00421        307 KGLCMMPK  314 (493)
T ss_pred             cceEeccc
Confidence            88888885

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-31  Score=198.13  Aligned_cols=234  Identities=17%  Similarity=0.305  Sum_probs=186.6

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++|.+||+++.  +.-+|++... ...+...++.+|.     .+|..+.|+ |+.++|++++.|..+.+||+.++.....
T Consensus       234 ~nGkyLAsaSkD~Taiiw~v~~d-~~~kl~~tlvgh~-----~~V~yi~wS-PDdryLlaCg~~e~~~lwDv~tgd~~~~  306 (519)
T KOG0293|consen  234 HNGKYLASASKDSTAIIWIVVYD-VHFKLKKTLVGHS-----QPVSYIMWS-PDDRYLLACGFDEVLSLWDVDTGDLRHL  306 (519)
T ss_pred             CCCeeEeeccCCceEEEEEEecC-cceeeeeeeeccc-----CceEEEEEC-CCCCeEEecCchHheeeccCCcchhhhh
Confidence            68999999994  9999998765 4478889999999     899999999 8999999999999999999999998877


Q ss_pred             ee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee----------------------ee--------e-----
Q 035558           81 LI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST----------------------II--------Y-----  123 (253)
Q Consensus        81 ~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------~~--------~-----  123 (253)
                      +. ++...+.+.+|. ++..+++|+.|+++..||+.......                      .+        +     
T Consensus       307 y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~  386 (519)
T KOG0293|consen  307 YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR  386 (519)
T ss_pred             cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence            75 456889999999 99999999999999999987542100                      00        0     


Q ss_pred             ---ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc--ceeEEEEecCCCCeEEEecCCCc
Q 035558          124 ---ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       124 ---~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                         .....+.+|+++..+. ++.++++.-.+.. +++||+.... .+..+.+|..  .+-.-+|.--.+.++++||+|+.
T Consensus       387 ~dr~lise~~~its~~iS~-d~k~~LvnL~~qe-i~LWDl~e~~-lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k  463 (519)
T KOG0293|consen  387 VDRGLISEEQPITSFSISK-DGKLALVNLQDQE-IHLWDLEENK-LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK  463 (519)
T ss_pred             hhhccccccCceeEEEEcC-CCcEEEEEcccCe-eEEeecchhh-HHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence               0011234778888877 7777777766766 8889888544 3667777764  34445666544469999999999


Q ss_pred             EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          199 ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      |+||+..+++...       .+.+|...|++++|+|..+.++ +++.|++||||..
T Consensus       464 vyIWhr~sgkll~-------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  464 VYIWHRISGKLLA-------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             EEEEEccCCceeE-------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            9999999987554       8899999999999999988655 6788999999963

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.1e-30  Score=195.79  Aligned_cols=226  Identities=19%  Similarity=0.280  Sum_probs=194.8

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      ...+.+|+ | .+.++|...+    +.+.+++||.     ..|+.+.|+ ++...+++++.|-.|+||............
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~----q~l~~~~Gh~-----kki~~v~~~-~~~~~v~~aSad~~i~vws~~~~s~~~~~~  300 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSN----QILATLKGHT-----KKITSVKFH-KDLDTVITASADEIIRVWSVPLSSEPTSSR  300 (506)
T ss_pred             CCcceecCCCCceEEEecchh----hhhhhccCcc-----eEEEEEEec-cchhheeecCCcceEEeeccccccCccccc
Confidence            35666777 5 9999999998    9999999999     899999999 888999999999999999998888788888


Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .|..+|+.+..+ .+++|++++.||+..+.|++++......... ...-.+++.+||| ||.+|.+|..|+. +++||+.
T Consensus       301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgtgt~d~~-vkiwdlk  377 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGTGTPDGV-VKIWDLK  377 (506)
T ss_pred             cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC-CceEEeccCCCce-EEEEEcC
Confidence            999999999999 9999999999999999999999865554432 3334799999999 9999999999998 9999999


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      .+.. +..|.+|.++|..++|+.+| .+|+++.+|+.|++||++..+...      ........++.++.|.+.|+++..
T Consensus       378 s~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~k------t~~l~~~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  378 SQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFK------TIQLDEKKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             Cccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccc------eeeccccccceeEEEcCCCCeEEe
Confidence            8774 89999999999999999999 799999999999999999877432      233334458999999999998888


Q ss_pred             EEcCCcEEEE
Q 035558          242 IAFSTKLQIL  251 (253)
Q Consensus       242 ~~~~~~i~vw  251 (253)
                      ++.+=.|.++
T Consensus       450 ~g~~l~Vy~~  459 (506)
T KOG0289|consen  450 AGSDLQVYIC  459 (506)
T ss_pred             ecceeEEEEE
Confidence            8665555444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.4e-31  Score=210.80  Aligned_cols=204  Identities=17%  Similarity=0.209  Sum_probs=164.6

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSAD  105 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d  105 (253)
                      +++..+.||.     +.|.+++|+  ..++|++++.|.+|++|++...+++..|. |...|+|++|+  |.++|++|+-|
T Consensus       360 kP~~ef~GHt-----~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD  431 (712)
T KOG0283|consen  360 KPFCEFKGHT-----ADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD  431 (712)
T ss_pred             cchhhhhccc-----hhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence            4456677787     899999998  56789999999999999999999999887 99999999999  99999999999


Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee--ccc------ccce
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL--QRH------QASV  177 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~------~~~i  177 (253)
                      |.|+||++...+   +..-...+ .-|++++|.| +|+..++|+.+|. +++|+....+. ....  ..|      ...|
T Consensus       432 ~KvRiWsI~d~~---Vv~W~Dl~-~lITAvcy~P-dGk~avIGt~~G~-C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~rI  504 (712)
T KOG0283|consen  432 GKVRLWSISDKK---VVDWNDLR-DLITAVCYSP-DGKGAVIGTFNGY-CRFYDTEGLKL-VSDFHIRLHNKKKKQGKRI  504 (712)
T ss_pred             cceEEeecCcCe---eEeehhhh-hhheeEEecc-CCceEEEEEeccE-EEEEEccCCeE-EEeeeEeeccCccccCcee
Confidence            999999998776   22222222 4899999999 8999999999999 99999987542 1111  111      2279


Q ss_pred             eEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC--CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA--GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +++.|.|..+..+++.+.|..|||||.+......       .+.++  ...-...+|+.+|+++++++.|..|.+|++
T Consensus       505 TG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~-------KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  505 TGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH-------KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             eeeEecCCCCCeEEEecCCCceEEEeccchhhhh-------hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            9999999776668888899999999997655332       33332  333456789999999999999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.5e-32  Score=197.68  Aligned_cols=226  Identities=15%  Similarity=0.218  Sum_probs=184.5

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----   75 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----   75 (253)
                      |.....+++|+ | .|++||+...    .+..++++|.     +.|..|++. .  ..+++++.|.+|+.|.++..    
T Consensus        76 p~~ls~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~-----G~V~Gi~v~-~--~~~~tvgdDKtvK~wk~~~~p~~t  143 (433)
T KOG0268|consen   76 PNKLSTVASGSCDGEVKIWNLSQR----ECIRTFKAHE-----GLVRGICVT-Q--TSFFTVGDDKTVKQWKIDGPPLHT  143 (433)
T ss_pred             cchhhhhhccccCceEEEEehhhh----hhhheeeccc-----CceeeEEec-c--cceEEecCCcceeeeeccCCccee
Confidence            44445677877 6 9999999997    8899999999     999999997 3  66788889999999974421    


Q ss_pred             ----------------------------------eeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558           76 ----------------------------------AVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        76 ----------------------------------~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                                                        .+++.+.--...|.++.|+  ....|++|+.|+.|.+||+++..+.
T Consensus       144 ilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl  223 (433)
T KOG0268|consen  144 ILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL  223 (433)
T ss_pred             eeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc
Confidence                                              1222222223456777777  6778999999999999999999866


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcE
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQA  199 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  199 (253)
                      ..+....    .-+.++|+| ++..+++++.|.+ ++.||++....|+....+|...|.+++|+|.| +-+++||.|.+|
T Consensus       224 ~KVi~~m----RTN~IswnP-eafnF~~a~ED~n-lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksI  296 (433)
T KOG0268|consen  224 KKVILTM----RTNTICWNP-EAFNFVAANEDHN-LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSI  296 (433)
T ss_pred             ceeeeec----cccceecCc-cccceeecccccc-ceehhhhhhcccchhhcccceeEEEeccCCCc-chhccccccceE
Confidence            5553322    556799999 9999999999999 99999999999999999999999999999999 799999999999


Q ss_pred             EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +||..+.+....      .....--..|.++.|+-|.+++++|+.|+.|++|+
T Consensus       297 RIf~~~~~~SRd------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  297 RIFPVNHGHSRD------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             EEeecCCCcchh------hhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            999998776432      12222356799999999999999999999999997

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3.5e-31  Score=207.35  Aligned_cols=235  Identities=15%  Similarity=0.205  Sum_probs=200.2

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccc--cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-   75 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-   75 (253)
                      |++++++|.+|+ | .|++|+.......  ......++.|.     +.|..+... .+++.|++++.|-+|++|+...+ 
T Consensus        33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs-----DWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS-----DWVNDIILC-GNGKTLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH-----hHHhhHHhh-cCCCceEEecCCceEEEeecccCc
Confidence            467888888888 5 9999998764221  22467788898     899999988 88989999999999999999877 


Q ss_pred             -eeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC-------eeeeecc-CCCCCCeeEEEeeCCCCCE
Q 035558           76 -AVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH-------STIIYES-SEPDTPLVRLGWNKQDPRY  144 (253)
Q Consensus        76 -~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~-~~~~~~i~~~~~~~~~~~~  144 (253)
                       -++.++..|.+.|.|+++-  +..++|+|+.|+.|.+||++++..       ....... .++..+|++++.++ .+..
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~  185 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTI  185 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceE
Confidence             4778889999999999994  889999999999999999997732       1111122 26677999999999 8889


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      |++|+..+. +++||.++.++ +..+++|...|..+..+++| +.++++|.||+|++||+.......       .+..|.
T Consensus       186 ivsGgtek~-lr~wDprt~~k-imkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~-------T~~vH~  255 (735)
T KOG0308|consen  186 IVSGGTEKD-LRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLA-------TYIVHK  255 (735)
T ss_pred             EEecCcccc-eEEeccccccc-eeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceee-------eEEecc
Confidence            999999988 99999999776 88889999999999999999 799999999999999999887765       678899


Q ss_pred             CceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          225 AEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ..|+++..+|+-..+.+++.|+.|..=+
T Consensus       256 e~VWaL~~~~sf~~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  256 EGVWALQSSPSFTHVYSGGRDGNIYRTD  283 (735)
T ss_pred             CceEEEeeCCCcceEEecCCCCcEEecc
Confidence            9999999999988899999999886543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.98  E-value=1.5e-30  Score=192.08  Aligned_cols=239  Identities=25%  Similarity=0.500  Sum_probs=187.3

Q ss_pred             ceEEeecC--cEEEEEccCC------------ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558            6 DLLATSSD--FLRVWRISDE------------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD   71 (253)
Q Consensus         6 ~~l~~~~~--~v~iw~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd   71 (253)
                      .+.|+=++  .|+||++...            ....+++.++.+|+     ..=++++|||.....|++|..-+.|++|.
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-----~EGy~LdWSp~~~g~LlsGDc~~~I~lw~  240 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-----GEGYGLDWSPIKTGRLLSGDCVKGIHLWE  240 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-----ccceeeecccccccccccCccccceEeee
Confidence            34555555  9999998542            23456778888898     66779999976667789999999999999


Q ss_pred             ccCcee---eeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           72 IEREAV---DTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        72 ~~~~~~---~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                      ..++.-   ...+.+|+..|-+|+|+  ....|++|+-||+|+|||+|.+.....+.. ..|.+-|+.+.|+. ...+||
T Consensus       241 ~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr-~~~lLa  318 (440)
T KOG0302|consen  241 PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR-REPLLA  318 (440)
T ss_pred             eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC-Ccceee
Confidence            988752   23455799999999999  788999999999999999999854444443 57777999999998 555899


Q ss_pred             EEEeCCCeEEEEECCCCC--CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC------CC---CCC
Q 035558          147 TIIMDSAKVVVLDIRFPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP------VE---GGL  215 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~---~~~  215 (253)
                      +|+.+|. ++|||+|..+  .|+..++.|..+|+++.|+|.....|++++.|..|.+||+.-....      ..   ...
T Consensus       319 sG~DdGt-~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dl  397 (440)
T KOG0302|consen  319 SGGDDGT-LSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDL  397 (440)
T ss_pred             ecCCCce-EEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcC
Confidence            9998888 9999999754  6789999999999999999987779999999999999999754321      11   113


Q ss_pred             CCeeeccC--CCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          216 DPILAYTA--GAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       216 ~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .|..++-|  ...+..+.|+++-+.++....-..+.||+
T Consensus       398 PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  398 PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             CceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence            34555656  56799999999987766554444566664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.8e-30  Score=195.04  Aligned_cols=237  Identities=19%  Similarity=0.306  Sum_probs=188.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeee-------------cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEE
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLL-------------NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCT   68 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   68 (253)
                      .|+++|.|. + .|.|||++-. +...+..++             +.+....|+..|.+++|+....+.||+|+.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~-d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIV-DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccc-cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            467999998 6 9999998754 111111111             22222234488999999966788999999999999


Q ss_pred             EEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           69 IWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        69 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                      +||+.++++..++..|..+|.+++|+  .+..|++|+.|++|.+.|.|...........   .+.|-.++|+|.....++
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCCCceeEE
Confidence            99999999999999999999999999  8899999999999999999965433333333   347889999997778888


Q ss_pred             EEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC---
Q 035558          147 TIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA---  223 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---  223 (253)
                      ++..||. ++-+|+|+..+++.++++|.++|.++++++.-+.+|++++.|+.+++|++......        ....|   
T Consensus       347 ~~tddG~-v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--------~v~~~~~~  417 (463)
T KOG0270|consen  347 VSTDDGT-VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--------SVKEHSFK  417 (463)
T ss_pred             EecCCce-EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc--------cccccccc
Confidence            8888887 99999999989999999999999999999998889999999999999999864421        22222   


Q ss_pred             CCceeEEEEcCCCCceEE-EEcCCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWVA-IAFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~-~~~~~~i~vw~l  253 (253)
                      -+...+.++.|+-..+++ +|..+.++||++
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ccceeecccCCCcceEEEecCccceEEEeec
Confidence            234677888888777775 455556999985

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=2.7e-29  Score=192.52  Aligned_cols=230  Identities=19%  Similarity=0.307  Sum_probs=197.4

Q ss_pred             CCCCceEEeecC-----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558            2 CQKPDLLATSSD-----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         2 p~~~~~l~~~~~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      ++..+++|+|.+     .+.+||.  +    .....+.+|.     ..|+++.|-|.-+-++++|++|+.|.+|+-...+
T Consensus       113 ~ds~RI~avGEGrerfg~~F~~DS--G----~SvGei~GhS-----r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK  181 (603)
T KOG0318|consen  113 FDSKRIAAVGEGRERFGHVFLWDS--G----NSVGEITGHS-----RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK  181 (603)
T ss_pred             CCCcEEEEEecCccceeEEEEecC--C----Cccceeeccc-----eeEeeeeccCCCceEEEeccCCCeEEEeeCCCee
Confidence            445556666653     4555554  4    4588999999     8999999997777889999999999999987778


Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ...+++.|..-|+++.|+ +++.|++++.||++.+||-.+++....+.....|.+.|..++|+| ++..+++++.|.. +
T Consensus       182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt-~  259 (603)
T KOG0318|consen  182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKT-I  259 (603)
T ss_pred             eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCce-E
Confidence            888888999999999999 999999999999999999999997777776778999999999999 9999999999998 9


Q ss_pred             EEEECCCCCC------------------------------------------CeeeecccccceeEEEEecCCCCeEEEe
Q 035558          156 VVLDIRFPTL------------------------------------------PVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       156 ~~~d~~~~~~------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      ++||..+.+.                                          +.+.+.+|...|+++..+|++ .+|++|
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~Sg  338 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSG  338 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEee
Confidence            9999875431                                          345567899999999999999 799999


Q ss_pred             cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          194 GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       194 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +.||.|.-|+..++..-.      ..-..|...|.+++-+..+. +++++.|+.+++..
T Consensus       339 syDG~I~~W~~~~g~~~~------~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~  390 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGTSDR------LAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVIS  390 (603)
T ss_pred             ccCceEEEEecCCccccc------cccccccceEEEEeecCCCc-EEEEecCCeEEEEe
Confidence            999999999999887432      34578999999999988664 99999999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=6.6e-30  Score=188.68  Aligned_cols=229  Identities=18%  Similarity=0.314  Sum_probs=186.0

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC--CCEEEEEeCCCeEEEEeccCce----
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE--PRRIGTSSIDTTCTIWDIEREA----   76 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~----   76 (253)
                      +..+.+|+ | .+++||...     +...++.+|.     ++|.+++|.-++  ...|++++.|.++++|..+.++    
T Consensus       115 ~~~IltgsYDg~~riWd~~G-----k~~~~~~Ght-----~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~  184 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKG-----KSIKTIVGHT-----GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK  184 (423)
T ss_pred             CceEEEeecCCeeEEEecCC-----ceEEEEecCC-----cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh
Confidence            34566665 6 999999987     8899999999     899988886332  2369999999999999988775    


Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC----------------------CeeeeeccCCCCCCee
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE----------------------HSTIIYESSEPDTPLV  133 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----------------------~~~~~~~~~~~~~~i~  133 (253)
                      .+...++|+..|.+++.. ++..+++|+.|.+|.+|+..+..                      ...++....+|..+|.
T Consensus       185 ~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs  264 (423)
T KOG0313|consen  185 ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS  264 (423)
T ss_pred             HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee
Confidence            333445999999999999 99999999999999999933211                      0112334467888999


Q ss_pred             EEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC
Q 035558          134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG  213 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  213 (253)
                      ++.|++  ...+++++.|.+ |+.||+.+++. ...+.+ ...++++..+|.. .+|++|+.|..|++||.+++....  
T Consensus       265 ~V~w~d--~~v~yS~SwDHT-Ik~WDletg~~-~~~~~~-~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~--  336 (423)
T KOG0313|consen  265 SVVWSD--ATVIYSVSWDHT-IKVWDLETGGL-KSTLTT-NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSV--  336 (423)
T ss_pred             eEEEcC--CCceEeecccce-EEEEEeecccc-eeeeec-CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCce--
Confidence            999985  788999999998 99999999774 444443 5689999999988 699999999999999999876432  


Q ss_pred             CCCCeeeccCCCceeEEEEcCCCCce-EEEEcCCcEEEEEC
Q 035558          214 GLDPILAYTAGAEIEQLQWSSSQPDW-VAIAFSTKLQILRV  253 (253)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~vw~l  253 (253)
                        ....+.+|.+.|.++.|+|...+. ++++.|+.+++||+
T Consensus       337 --v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  337 --VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             --eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence              125677999999999999987754 48999999999986

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.9e-29  Score=178.83  Aligned_cols=226  Identities=17%  Similarity=0.124  Sum_probs=184.2

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC--CCeEEEEeccCceee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVD   78 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~   78 (253)
                      ++|.+|++++ + ++++||...+    +..+++..++     ..+..++|- ...+.++.++.  |.+|+..++.+.+.+
T Consensus        24 ~~G~~litss~dDsl~LYd~~~g----~~~~ti~skk-----yG~~~~~Ft-h~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   24 DDGLLLITSSEDDSLRLYDSLSG----KQVKTINSKK-----YGVDLACFT-HHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CCCCEEEEecCCCeEEEEEcCCC----ceeeEeeccc-----ccccEEEEe-cCCceEEEccCCCCCceEEEEeecCceE
Confidence            4677777766 4 9999999998    8888888887     678888887 55556666665  889999999999999


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      +.+.||...|.+++.+ -++.+++++.|++|++||++..++...+...     .-..++|+| +|.++|++...+. |++
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-----~~pi~AfDp-~GLifA~~~~~~~-IkL  166 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-----GRPIAAFDP-EGLIFALANGSEL-IKL  166 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-----CCcceeECC-CCcEEEEecCCCe-EEE
Confidence            9999999999999999 7799999999999999999988766555433     223578999 9999999988876 999


Q ss_pred             EECCCC-CCCeeeeccc---ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC---CCceeEE
Q 035558          158 LDIRFP-TLPVVELQRH---QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA---GAEIEQL  230 (253)
Q Consensus       158 ~d~~~~-~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~~  230 (253)
                      ||+|.. +.|...+.-.   ....+.|.|+|+| ++++.+...+.+++.|.-.+....       .+..+   ..-..+.
T Consensus       167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~-------tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKS-------TFSGYPNAGNLPLSA  238 (311)
T ss_pred             EEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEee-------eEeeccCCCCcceeE
Confidence            999986 3555555443   5678999999999 699999999999999998887433       22222   2122677


Q ss_pred             EEcCCCCceEEEEcCCcEEEEEC
Q 035558          231 QWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .|+|+++.+++++.|+.|.+|++
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEc
Confidence            89999999999999999999985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.8e-31  Score=187.20  Aligned_cols=220  Identities=14%  Similarity=0.215  Sum_probs=182.6

Q ss_pred             eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-eeeeeec
Q 035558            7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-VDTQLIA   83 (253)
Q Consensus         7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~   83 (253)
                      ..|+++ | +.++||.-++    ..+..++ |+     --|.+++|+ .+.++|++|+.+..++|||++..+ +...+.+
T Consensus        73 ~aasaaadftakvw~a~tg----delhsf~-hk-----hivk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   73 RAASAAADFTAKVWDAVTG----DELHSFE-HK-----HIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             hhhhhcccchhhhhhhhhh----hhhhhhh-hh-----heeeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence            334444 5 9999998887    5566654 44     578999999 899999999999999999998765 6677889


Q ss_pred             ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558           84 HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus        84 ~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      |.+.|..+.|+ ..+.++++..|++||+||.+++...+.+..    +.+|+++..++ ++.++.++. .++ |.+||..+
T Consensus       142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~----~s~VtSlEvs~-dG~ilTia~-gss-V~Fwdaks  214 (334)
T KOG0278|consen  142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF----NSPVTSLEVSQ-DGRILTIAY-GSS-VKFWDAKS  214 (334)
T ss_pred             CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec----CCCCcceeecc-CCCEEEEec-Cce-eEEecccc
Confidence            99999999999 888999999999999999999986666543    33899999998 888776653 333 99999988


Q ss_pred             CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      ... ++.+.. ...|.+..++|+. ..+++|++|..++.||..++....      ....+|.++|.++.|+|+|...+++
T Consensus       215 f~~-lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~------~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  215 FGL-LKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIG------SYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             ccc-eeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccCCceee------ecccCCCCceEEEEECCCCceeecc
Confidence            664 555543 4578999999998 599999999999999999988654      2357899999999999999988899


Q ss_pred             EcCCcEEEEEC
Q 035558          243 AFSTKLQILRV  253 (253)
Q Consensus       243 ~~~~~i~vw~l  253 (253)
                      +.||.|++|.+
T Consensus       286 SEDGTirlWQt  296 (334)
T KOG0278|consen  286 SEDGTIRLWQT  296 (334)
T ss_pred             CCCceEEEEEe
Confidence            99999999974

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.4e-30  Score=209.20  Aligned_cols=201  Identities=16%  Similarity=0.286  Sum_probs=165.6

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccC------------------------------------------------
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER------------------------------------------------   74 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------------------------------------------------   74 (253)
                      +.|.++.|+ ++|++||+|+.|+.|+||.+..                                                
T Consensus       268 gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~  346 (712)
T KOG0283|consen  268 GAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP  346 (712)
T ss_pred             CcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence            999999999 9999999999999999998754                                                


Q ss_pred             ------------ceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC
Q 035558           75 ------------EAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP  142 (253)
Q Consensus        75 ------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  142 (253)
                                  .+++..+.+|.+.|.+|.|+..++|++++.|.+|++|++...+++..+    .|..-|+|++|+|.|.
T Consensus       347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDD  422 (712)
T ss_pred             cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCC
Confidence                        013345678999999999998889999999999999999998877666    5666999999999999


Q ss_pred             CEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC--CCCCCeee
Q 035558          143 RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE--GGLDPILA  220 (253)
Q Consensus       143 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~  220 (253)
                      ++|++|+-|+. |++|++...+  +.....-...|++++|.|+| ++.+.|+.+|.+++|+....+....  ........
T Consensus       423 ryFiSGSLD~K-vRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  423 RYFISGSLDGK-VRLWSISDKK--VVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             CcEeecccccc-eEEeecCcCe--eEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence            99999999999 9999998644  44444445789999999999 6999999999999999987653220  00001112


Q ss_pred             ccCCCceeEEEEcCCCCc-eEEEEcCCcEEEEEC
Q 035558          221 YTAGAEIEQLQWSSSQPD-WVAIAFSTKLQILRV  253 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw~l  253 (253)
                      ..|. .|++++|.|.... ++..+.|..|||+++
T Consensus       499 ~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  499 KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             ccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            2234 8999999987654 889999999999974

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=4.9e-30  Score=185.29  Aligned_cols=240  Identities=14%  Similarity=0.205  Sum_probs=196.4

Q ss_pred             CCCceEEeec-C-cEEEEEccCC--------------ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe
Q 035558            3 QKPDLLATSS-D-FLRVWRISDE--------------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT   66 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   66 (253)
                      ++|.++|+|+ | .|+|.|++..              ...-..++++-.|.     ++|+++.|+ |....|++|+.|++
T Consensus       122 ~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~-----devn~l~FH-Pre~ILiS~srD~t  195 (430)
T KOG0640|consen  122 PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV-----DEVNDLDFH-PRETILISGSRDNT  195 (430)
T ss_pred             CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc-----Ccccceeec-chhheEEeccCCCe
Confidence            5889999999 6 9999998721              01124567777787     899999999 88999999999999


Q ss_pred             EEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558           67 CTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR  143 (253)
Q Consensus        67 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  143 (253)
                      |+++|+......+.++  ....+|.++.|+ .|++++.|...-++++||+++-++.........|.+.|+++.+++ .++
T Consensus       196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~  274 (430)
T KOG0640|consen  196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS  274 (430)
T ss_pred             EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence            9999997554333222  246799999999 999999999999999999999987666666678888999999999 999


Q ss_pred             EEEEEEeCCCeEEEEECCCCCCCeeeec-cccc-ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC---------
Q 035558          144 YMATIIMDSAKVVVLDIRFPTLPVVELQ-RHQA-SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE---------  212 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------  212 (253)
                      +.++++.||. |++||--+.+ ++.++. .|.+ .|.+..|..++ +++++.+.|..+++|.+.++.....         
T Consensus       275 lYvTaSkDG~-IklwDGVS~r-Cv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgr  351 (430)
T KOG0640|consen  275 LYVTASKDGA-IKLWDGVSNR-CVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGR  351 (430)
T ss_pred             EEEEeccCCc-EEeeccccHH-HHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCcccc
Confidence            9999999999 9999987655 465553 4554 69999999999 7999999999999999988652210         


Q ss_pred             ----------CC-----------------------CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          213 ----------GG-----------------------LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       213 ----------~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                                ..                       .......+|++.+..+.-+|.++.+++++.|-.+|+|.
T Consensus       352 q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  352 QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence                      00                       01234458999999999999999999999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-29  Score=177.36  Aligned_cols=204  Identities=19%  Similarity=0.273  Sum_probs=178.7

Q ss_pred             eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEE
Q 035558           32 LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRV  110 (253)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i  110 (253)
                      .+++|+     .+++.+.++ .+|.+|++++.|.+..||-...|+.+.++.+|++.|+++... +...+++|+.|.++++
T Consensus         5 ~l~GHE-----RplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGHE-----RPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccCc-----cccceEEec-CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            467898     899999999 999999999999999999998999999999999999999999 9999999999999999


Q ss_pred             EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCC------CCCeeeecccccceeEE
Q 035558          111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFP------TLPVVELQRHQASVNAI  180 (253)
Q Consensus       111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~------~~~~~~~~~~~~~i~~~  180 (253)
                      ||+++++......    ...+|..+.|++ ++++++.+..+.    +.|.++|++..      +.|...+..+...++.+
T Consensus        79 WDv~tGk~la~~k----~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a  153 (327)
T KOG0643|consen   79 WDVETGKQLATWK----TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA  153 (327)
T ss_pred             EEcCCCcEEEEee----cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence            9999998655443    233899999999 888877765432    24999999843      35688888899999999


Q ss_pred             EEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      -|.|-+ .+|++|.+||.|.+||++++....      .....|...|++++++|+..++++++.|.+.++|++
T Consensus       154 ~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v------~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  154 LWGPLG-ETIIAGHEDGSISIYDARTGKELV------DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             eecccC-CEEEEecCCCcEEEEEcccCceee------echhhhccccccccccCCcceEEecccCccceeeec
Confidence            999999 599999999999999999987554      344568899999999999999999999999999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.4e-29  Score=193.74  Aligned_cols=241  Identities=16%  Similarity=0.261  Sum_probs=179.7

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-   79 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-   79 (253)
                      +.|..|++|+ | .|++||+...+..++..+.++..+.    ..|.++.|+ +++..|++.+.....+|+|....+... 
T Consensus       177 p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~----h~i~sl~ys-~Tg~~iLvvsg~aqakl~DRdG~~~~e~  251 (641)
T KOG0772|consen  177 PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET----HQINSLQYS-VTGDQILVVSGSAQAKLLDRDGFEIVEF  251 (641)
T ss_pred             CCCceeeeccccceEEEEecccccccchhhhccCcccc----cccceeeec-CCCCeEEEEecCcceeEEccCCceeeee
Confidence            3566777877 7 9999999876444555555544332    479999999 788888888888899999987554322 


Q ss_pred             -----------eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc---CCCCCCeeEEEeeCCCCC
Q 035558           80 -----------QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYES---SEPDTPLVRLGWNKQDPR  143 (253)
Q Consensus        80 -----------~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~  143 (253)
                                 .-++|...+++.+|+  ..+.|++++.||++++||+...+....+...   .+..-+++.++|+| ++.
T Consensus       252 ~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~  330 (641)
T KOG0772|consen  252 SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGK  330 (641)
T ss_pred             eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccc
Confidence                       235899999999999  7789999999999999999876543333322   22334789999999 999


Q ss_pred             EEEEEEeCCCeEEEEECCCCC-CC-eeeeccccc--ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC---
Q 035558          144 YMATIIMDSAKVVVLDIRFPT-LP-VVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD---  216 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~-~~-~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---  216 (253)
                      +||+|..||. |.+|+.+... .+ ...-.+|..  .|+++.|+++| ++|++-+.|+++++||++..++++.....   
T Consensus       331 ~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t  408 (641)
T KOG0772|consen  331 LIAAGCLDGS-IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT  408 (641)
T ss_pred             hhhhcccCCc-eeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccchhhhcCCCc
Confidence            9999999999 9999986644 22 344456877  89999999999 79999999999999999998765411000   


Q ss_pred             ----------------------------C-------------eeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          217 ----------------------------P-------------ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       217 ----------------------------~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                                                  .             ....-....|..+.|+|.-+.+++++.||.++|+
T Consensus       409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence                                        0             0111124566777888877778888888887775

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=179.27  Aligned_cols=226  Identities=20%  Similarity=0.330  Sum_probs=172.6

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      ||+...++++++ | +||+|+++.. ..+.. +....|.     ++|.+++|+ .++..+++|+.|+.+++||+.+++ .
T Consensus        36 SP~~~~~~~A~SWD~tVR~wevq~~-g~~~~-ka~~~~~-----~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q-~  106 (347)
T KOG0647|consen   36 SPQADNLLAAGSWDGTVRIWEVQNS-GQLVP-KAQQSHD-----GPVLDVCWS-DDGSKVFSGGCDKQAKLWDLASGQ-V  106 (347)
T ss_pred             ccccCceEEecccCCceEEEEEecC-Ccccc-hhhhccC-----CCeEEEEEc-cCCceEEeeccCCceEEEEccCCC-e
Confidence            576777787777 7 9999999873 22222 4445566     899999999 899999999999999999999985 5


Q ss_pred             eeeecccccEEEEEec-CC--CeEEEEeCCCcEEEEEcCCCCCeeeeeccCC----------------------------
Q 035558           79 TQLIAHDKEVYDIAWG-GV--GVFASVSADGSVRVFDLRDKEHSTIIYESSE----------------------------  127 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------------------------  127 (253)
                      ..+..|.++|..+.|- ..  ..|+||+.|.+|+.||.|...+...+..+..                            
T Consensus       107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence            5577799999999998 44  4899999999999999998764322211100                            


Q ss_pred             ----------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeeccccc---------ceeEEEEecCCC
Q 035558          128 ----------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQA---------SVNAIAWAPHSS  187 (253)
Q Consensus       128 ----------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~---------~i~~~~~~~~~~  187 (253)
                                -+-.++|++..+ +....+.|+-+|. +-+..+.... ..-..++.|..         .|++++|+|.. 
T Consensus       187 ~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-  263 (347)
T KOG0647|consen  187 PTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-  263 (347)
T ss_pred             cchhhhhcCcccceeeEEEEEe-cCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-
Confidence                      112467777777 6666688888887 7777776532 22456666762         58889999987 


Q ss_pred             CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcC
Q 035558          188 CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFS  245 (253)
Q Consensus       188 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~  245 (253)
                      ..|+|++.||++.+||-....+..       ....|..+|++.+|+.+|..++ |.+.|
T Consensus       264 gtlvTaGsDGtf~FWDkdar~kLk-------~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  264 GTLVTAGSDGTFSFWDKDARTKLK-------TSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             ceEEEecCCceEEEecchhhhhhh-------ccCcCCCccceeEecCCCCEEEEEeecc
Confidence            499999999999999988876554       6667899999999999998665 55554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.2e-29  Score=200.34  Aligned_cols=226  Identities=16%  Similarity=0.230  Sum_probs=192.0

Q ss_pred             CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----e
Q 035558            4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----A   76 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~   76 (253)
                      .+++++.|.+  .+.+||+...    ..+.+.++|.     +.|.+++.+ |++..+++|+.|.+|++||+.--     .
T Consensus       423 gd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHd-----gaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~gt  492 (888)
T KOG0306|consen  423 GDRYIVLGTKNGELQVFDLASA----SLVETIRAHD-----GAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPGT  492 (888)
T ss_pred             CCceEEEeccCCceEEEEeehh----hhhhhhhccc-----cceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence            3445555554  6777777665    6677778888     999999999 89999999999999999997522     1


Q ss_pred             eeeeee-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           77 VDTQLI-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        77 ~~~~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      ....+.       .-+..|.|++++ ++.+|+.+--|.++++|-+.+-+   .....-+|.-||.||..+| +++++++|
T Consensus       493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---FflsLYGHkLPV~smDIS~-DSklivTg  568 (888)
T KOG0306|consen  493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---FFLSLYGHKLPVLSMDISP-DSKLIVTG  568 (888)
T ss_pred             cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---eeeeecccccceeEEeccC-CcCeEEec
Confidence            111111       245789999999 99999999999999999999887   4444557888999999999 99999999


Q ss_pred             EeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          149 IMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      +.|.+ |++|-+.-+. +.+.+.+|...|.++.|.|.. ++++++|.|+.|+-||-.......       .+.+|...|+
T Consensus       569 SADKn-VKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~iq-------~L~~H~~ev~  638 (888)
T KOG0306|consen  569 SADKN-VKIWGLDFGD-CHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEIQ-------KLDGHHSEVW  638 (888)
T ss_pred             cCCCc-eEEeccccch-hhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhhe-------eeccchheee
Confidence            99999 9999998765 689999999999999999987 799999999999999999887665       8899999999


Q ss_pred             EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          229 QLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +++.+|+|.++++++.|..|++|+.
T Consensus       639 cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  639 CLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             eeEEcCCCCeEEeccCCceeEeeec
Confidence            9999999999999999999999973

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.7e-30  Score=191.27  Aligned_cols=226  Identities=17%  Similarity=0.353  Sum_probs=183.9

Q ss_pred             CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ++++...|+++.| .+++|+++..    +...++.+|+     +.|+++.|. .....+++|+.|.+|++||+....+..
T Consensus       228 d~~~~~~iAas~d~~~r~Wnvd~~----r~~~TLsGHt-----dkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  228 DSDNKHVIAASNDKNLRLWNVDSL----RLRHTLSGHT-----DKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             cCCCceEEeecCCCceeeeeccch----hhhhhhcccc-----cceeeehhh-ccccceeeccccchhhhhhhhhhheec
Confidence            3677778888888 9999999997    9999999999     899999998 555569999999999999999887776


Q ss_pred             eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ++. ....+.+++.. ...+++|..|++|++||+++..+...+   +.+ +.|+++..++ ++..+.+++.|+. +.+.|
T Consensus       298 t~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv---~~g-g~vtSl~ls~-~g~~lLsssRDdt-l~viD  369 (459)
T KOG0288|consen  298 TVL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSV---PLG-GRVTSLDLSM-DGLELLSSSRDDT-LKVID  369 (459)
T ss_pred             ccc-ccccccceEec-ceeeeecccccceEEEeccCCceeeEe---ecC-cceeeEeecc-CCeEEeeecCCCc-eeeee
Confidence            654 23455556553 677899999999999999998854433   222 3899999999 8999999999999 99999


Q ss_pred             CCCCCCCeeeeccc----ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC-ceeEEEEcC
Q 035558          160 IRFPTLPVVELQRH----QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA-EIEQLQWSS  234 (253)
Q Consensus       160 ~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~  234 (253)
                      +++... ...+.+.    ....+.+.|+|++ .|+++||.||.|+||++.+++...      .....+.. .|++++|+|
T Consensus       370 lRt~eI-~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~------~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  370 LRTKEI-RQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEK------VLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             cccccE-EEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEE------EeccCCCCcceEEEEEcC
Confidence            998663 4444321    2348889999999 599999999999999999987543      22223333 799999999


Q ss_pred             CCCceEEEEcCCcEEEEE
Q 035558          235 SQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       235 ~~~~~~~~~~~~~i~vw~  252 (253)
                      .|.++++++.+..+.+|.
T Consensus       442 sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  442 SGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCchhhcccCCcceEecC
Confidence            999999999999999994

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=4.9e-29  Score=201.34  Aligned_cols=220  Identities=20%  Similarity=0.254  Sum_probs=191.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ..+.+|++|+ | ++++||..++    ++...+.+|.     ..|.++...   ...+++|+.|.+|++|+++++..+..
T Consensus       259 ~~~~~lvsgS~D~t~rvWd~~sg----~C~~~l~gh~-----stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l  326 (537)
T KOG0274|consen  259 SGGDKLVSGSTDKTERVWDCSTG----ECTHSLQGHT-----SSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNL  326 (537)
T ss_pred             cCCCEEEEEecCCcEEeEecCCC----cEEEEecCCC-----ceEEEEEcc---CceEeeccCCceEEEEeccCcceEEE
Confidence            3577888988 6 9999999998    9999999999     889888865   67788899999999999999999999


Q ss_pred             eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      +.+|.++|+++..+ +.++++|+.|++|++||+.+.++   +....+|...|+++.+.+ . ..+++|+.|+. |++||+
T Consensus       327 ~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~c---l~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~-IkvWdl  399 (537)
T KOG0274|consen  327 LRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKC---LKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTT-IKVWDL  399 (537)
T ss_pred             eccccccEEEEEec-CCEEEEEecCceEEEEEhhhcee---eeeecCCcceEEEEEecC-c-ceEEeeeeccc-eEeecC
Confidence            99999999999996 88999999999999999998874   444456888999998865 3 89999999988 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc-CCCceeEEEEcCCCCce
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  239 (253)
                      ++..+++..+.+|..-+..+.+.  + ++|++++.|++|++||...++...       ...+ |...|..+++.  ...+
T Consensus       400 ~~~~~c~~tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~~~-------~~~~~~~~~v~~l~~~--~~~i  467 (537)
T KOG0274|consen  400 RTKRKCIHTLQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGECLR-------TLEGRHVGGVSALALG--KEEI  467 (537)
T ss_pred             CchhhhhhhhcCCcccccccccc--c-ceeEeccccccEEEeecccCceee-------eeccCCcccEEEeecC--cceE
Confidence            99745799999999988777654  3 589999999999999999988654       4444 67889998887  3468


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.++.+++|++
T Consensus       468 l~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  468 LCSSDDGSVKLWDL  481 (537)
T ss_pred             EEEecCCeeEEEec
Confidence            99999999999986

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1e-28  Score=178.53  Aligned_cols=223  Identities=13%  Similarity=0.187  Sum_probs=182.1

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC-CCEEEEEeCCCeEEEEeccCceeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE-PRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++.++|+|+ | +|+|||+...    .....+-.|.     +.|+++.|.++- .+.|++|+.||.|.+|+...-+++..
T Consensus        52 s~~~~aSGssDetI~IYDm~k~----~qlg~ll~Ha-----gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s  122 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKR----KQLGILLSHA-----GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS  122 (362)
T ss_pred             cceeEeccCCCCcEEEEeccch----hhhcceeccc-----cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence            577899988 5 9999999987    7788888898     999999998432 24899999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +++|.+.|+.++.+ .+++-++.+.|+.+++||+-.++.........    ..+.+.|+| .|.+++.++.++  |-+|.
T Consensus       123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~----~at~v~w~~-~Gd~F~v~~~~~--i~i~q  195 (362)
T KOG0294|consen  123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN----KATLVSWSP-QGDHFVVSGRNK--IDIYQ  195 (362)
T ss_pred             ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC----cceeeEEcC-CCCEEEEEeccE--EEEEe
Confidence            99999999999999 99999999999999999999887443332211    334599999 899888888775  99998


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE--cCCCC
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW--SSSQP  237 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~  237 (253)
                      +.+... ...+. ....+.++.|...+  .|++|+.|+.|++||......+       ..+.+|..+|.++.+  .|++.
T Consensus       196 ~d~A~v-~~~i~-~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~-------~~~~AH~~RVK~i~~~~~~~~~  264 (362)
T KOG0294|consen  196 LDNASV-FREIE-NPKRILCATFLDGS--ELLVGGDNEWISLKDTDSDTPL-------TEFLAHENRVKDIASYTNPEHE  264 (362)
T ss_pred             cccHhH-hhhhh-ccccceeeeecCCc--eEEEecCCceEEEeccCCCccc-------eeeecchhheeeeEEEecCCce
Confidence            876542 22222 23557777776654  8999999999999999985433       478899999999984  45677


Q ss_pred             ceEEEEcCCcEEEEEC
Q 035558          238 DWVAIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~l  253 (253)
                      +++++++||.|+||++
T Consensus       265 ~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  265 YLVTASSDGFIKVWDI  280 (362)
T ss_pred             EEEEeccCceEEEEEc
Confidence            8889999999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.1e-28  Score=167.25  Aligned_cols=238  Identities=17%  Similarity=0.210  Sum_probs=180.2

Q ss_pred             CCCceEEeecC--cEEEEEccCC------c----cccc-eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEE
Q 035558            3 QKPDLLATSSD--FLRVWRISDE------D----RRVE-LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTI   69 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~------~----~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   69 (253)
                      +.|.+.++|++  ++||.....-      .    .++. ..+.-+.|+     +.|.|.+|+ +.+.++++|+.|.+|++
T Consensus        42 p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk-----gsiyc~~ws-~~geliatgsndk~ik~  115 (350)
T KOG0641|consen   42 PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK-----GSIYCTAWS-PCGELIATGSNDKTIKV  115 (350)
T ss_pred             CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC-----ccEEEEEec-CccCeEEecCCCceEEE
Confidence            56778888886  8888754321      0    0111 112233455     899999999 89999999999999998


Q ss_pred             EeccCce----------------------------------------------------eeeeeecccccEEEEEecCCC
Q 035558           70 WDIEREA----------------------------------------------------VDTQLIAHDKEVYDIAWGGVG   97 (253)
Q Consensus        70 wd~~~~~----------------------------------------------------~~~~~~~~~~~v~~~~~~~~~   97 (253)
                      .-++...                                                    ..+.+.+|++-|.++---++-
T Consensus       116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~  195 (350)
T KOG0641|consen  116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGA  195 (350)
T ss_pred             EecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCc
Confidence            7654311                                                    122334555555544211567


Q ss_pred             eEEEEeCCCcEEEEEcCCCCCeeeeeccCC----CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc
Q 035558           98 VFASVSADGSVRVFDLRDKEHSTIIYESSE----PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH  173 (253)
Q Consensus        98 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~  173 (253)
                      .+++|+.|.+|++||++-+.++..+.....    ..+.|.+++..| .++++++|-.|.. ..+||++.+. +++.+..|
T Consensus       196 m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dss-c~lydirg~r-~iq~f~ph  272 (350)
T KOG0641|consen  196 MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSS-CMLYDIRGGR-MIQRFHPH  272 (350)
T ss_pred             EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCc-eEEEEeeCCc-eeeeeCCC
Confidence            789999999999999998876655533211    124789999999 9999999999998 9999999866 59999999


Q ss_pred             ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...|.++.|+|.. .++++++.|..|++-|+...-...   ........|...+..+.|+|+.-.+++.+.|..+.+|-+
T Consensus       273 sadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~e---l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  273 SADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHE---LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             ccceeEEEeCCCc-eEEEEecccceEEEeecccchhhc---CceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            9999999999987 799999999999999997532111   122456679999999999999988999999999999964

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=8.6e-29  Score=199.90  Aligned_cols=219  Identities=17%  Similarity=0.229  Sum_probs=189.1

Q ss_pred             CceEEeecC--cEEEEEccCCccccceeee-ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            5 PDLLATSSD--FLRVWRISDEDRRVELKSL-LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ...+.++++  +|++|+...+    ..+.. +.+|.     +.|.++++. ..+.++++|+.|.++++||..++++...+
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~-----g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~C~~~l  287 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNG----YLILTRLVGHF-----GGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGECTHSL  287 (537)
T ss_pred             cCeEEecCCCceeEEeecccc----eEEEeeccCCC-----CCceeEEEe-cCCCEEEEEecCCcEEeEecCCCcEEEEe
Confidence            345666664  9999999987    66666 99999     999999997 67899999999999999999999999999


Q ss_pred             ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .+|.+.|.++.. .+..+++|+.|.+|++|++.++.....+.   +|..+|.++..+   +.++++|+.|+. |++||.+
T Consensus       288 ~gh~stv~~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~---~h~~~V~~v~~~---~~~lvsgs~d~~-v~VW~~~  359 (537)
T KOG0274|consen  288 QGHTSSVRCLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLR---GHTGPVNCVQLD---EPLLVSGSYDGT-VKVWDPR  359 (537)
T ss_pred             cCCCceEEEEEc-cCceEeeccCCceEEEEeccCcceEEEec---cccccEEEEEec---CCEEEEEecCce-EEEEEhh
Confidence            999999998877 47788889999999999999888555443   377899999995   789999999997 9999999


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC-CCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM-GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      +.+ +++.+.+|...|.++.+.+.  ..+++|+.|++|++||+++. +...       .+.+|..-+..+.+.  ++.++
T Consensus       360 ~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~-------tl~~h~~~v~~l~~~--~~~Lv  427 (537)
T KOG0274|consen  360 TGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIH-------TLQGHTSLVSSLLLR--DNFLV  427 (537)
T ss_pred             hce-eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhh-------hhcCCcccccccccc--cceeE
Confidence            755 69999999999999988876  38999999999999999998 5443       777888888777664  44789


Q ss_pred             EEEcCCcEEEEEC
Q 035558          241 AIAFSTKLQILRV  253 (253)
Q Consensus       241 ~~~~~~~i~vw~l  253 (253)
                      +++.|+.|++|+.
T Consensus       428 s~~aD~~Ik~WD~  440 (537)
T KOG0274|consen  428 SSSADGTIKLWDA  440 (537)
T ss_pred             eccccccEEEeec
Confidence            9999999999974

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5e-29  Score=198.26  Aligned_cols=226  Identities=16%  Similarity=0.246  Sum_probs=196.0

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +..+++++++ .+++|+.++.    ++++++..       ..+.+..|. |.++++++|...|.+.+||+.+...+..++
T Consensus       384 d~~~~~Sga~~SikiWn~~t~----kciRTi~~-------~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~  451 (888)
T KOG0306|consen  384 DSILLASGAGESIKIWNRDTL----KCIRTITC-------GYILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIR  451 (888)
T ss_pred             CceeeeecCCCcEEEEEccCc----ceeEEecc-------ccEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence            4557777777 9999999987    88888865       458899999 889999999999999999999999999999


Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC-----eeeee----ccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH-----STIIY----ESSEPDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      +|.+.|++++.. ++..+++|+.|.+|++||+.-...     .+.+.    ..-.-+..|.|++++| ++.+++++--|+
T Consensus       452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdn  530 (888)
T KOG0306|consen  452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDN  530 (888)
T ss_pred             ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccC
Confidence            999999999999 999999999999999999853211     11110    0012234899999999 999999999999


Q ss_pred             CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      + +++|-+.+.+. ...+-+|.-||.||..+|++ ++++|||.|.+|++|-+.-+.+-.       .+++|...|.++.|
T Consensus       531 T-VkVyflDtlKF-flsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHK-------S~fAHdDSvm~V~F  600 (888)
T KOG0306|consen  531 T-VKVYFLDTLKF-FLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHK-------SFFAHDDSVMSVQF  600 (888)
T ss_pred             e-EEEEEecceee-eeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhh-------hhhcccCceeEEEE
Confidence            8 99999998775 67788999999999999999 699999999999999999887654       88899999999999


Q ss_pred             cCCCCceEEEEcCCcEEEEE
Q 035558          233 SSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~  252 (253)
                      -|....++++|.|+.++-|+
T Consensus       601 ~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  601 LPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             cccceeEEEecCcceEEeec
Confidence            99988888999999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2e-30  Score=188.66  Aligned_cols=231  Identities=16%  Similarity=0.215  Sum_probs=190.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCcc---ccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSE---YCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      |++++|++|+ | .|.+|++.++    +..+.++-.....   ...+|.|++|+ .+...+++|+.||.|++|.+++|.+
T Consensus       223 PDgqyLvsgSvDGFiEVWny~~G----KlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri~tG~C  297 (508)
T KOG0275|consen  223 PDGQYLVSGSVDGFIEVWNYTTG----KLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRIETGQC  297 (508)
T ss_pred             CCCceEeeccccceeeeehhccc----hhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEEEEEEecchH
Confidence            6889999999 5 9999999887    4444333221111   22799999999 8999999999999999999999999


Q ss_pred             eeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           78 DTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        78 ~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ++.+. +|...|+++.|+ ++..+++++.|.++++.-+++++.   +.+..+|.+.|+...|.+ +|..+++++.||. |
T Consensus       298 lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgt-v  372 (508)
T KOG0275|consen  298 LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEATFTD-DGHHIISASSDGT-V  372 (508)
T ss_pred             HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh---HHHhcCccccccceEEcC-CCCeEEEecCCcc-E
Confidence            99887 899999999999 999999999999999999999984   555668888999999999 9999999999999 9


Q ss_pred             EEEECCCCCCCeeeec-----------------------------------------------ccccceeEEEEecCCCC
Q 035558          156 VVLDIRFPTLPVVELQ-----------------------------------------------RHQASVNAIAWAPHSSC  188 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~-----------------------------------------------~~~~~i~~~~~~~~~~~  188 (253)
                      ++|+..+... +.+++                                               ...+..-+.+.+|.|+ 
T Consensus       373 kvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe-  450 (508)
T KOG0275|consen  373 KVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE-  450 (508)
T ss_pred             EEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc-
Confidence            9999876431 11111                                               0112334566788884 


Q ss_pred             eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++.+.++|+.++.|.+.++....       .+.-|...+..++-+|..+.+++-+.|+.+++|+
T Consensus       451 wiYcigED~vlYCF~~~sG~LE~-------tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSVLSGKLER-------TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEccCcEEEEEEeecCceee-------eeecccccccccccCcccchhhhhcccchhhhcC
Confidence            89999999999999998887543       6677888999999999988788899999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.9e-28  Score=179.22  Aligned_cols=168  Identities=15%  Similarity=0.242  Sum_probs=151.6

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG  106 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg  106 (253)
                      ....+|..|+     ++|++++.+ |+.+++++|+.|..-.+|+..++.....+.+|+..|+++.|+ ++.+||||..+|
T Consensus        55 dS~~tF~~H~-----~svFavsl~-P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   55 DSLVTFDKHT-----DSVFAVSLH-PNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             cceeehhhcC-----CceEEEEeC-CCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence            3467888999     999999999 599999999999999999999999999999999999999999 999999999999


Q ss_pred             cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558          107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS  186 (253)
Q Consensus       107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  186 (253)
                      .|++|+..++.....+.   .....+.-+.|+| .+..|++|+.||. +..|.+.+... .+.+.+|..++++-.|.|+|
T Consensus       129 ~v~v~~~stg~~~~~~~---~e~~dieWl~WHp-~a~illAG~~DGs-vWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdG  202 (399)
T KOG0296|consen  129 KVLVFKVSTGGEQWKLD---QEVEDIEWLKWHP-RAHILLAGSTDGS-VWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDG  202 (399)
T ss_pred             cEEEEEcccCceEEEee---cccCceEEEEecc-cccEEEeecCCCc-EEEEECCCcce-eeEecCCCCCcccccccCCC
Confidence            99999999987544443   2333788899999 9999999999999 99999998643 78899999999999999999


Q ss_pred             CCeEEEecCCCcEEEEeccCCC
Q 035558          187 SCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                       +.++++..||+|++|++.++.
T Consensus       203 -Kr~~tgy~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  203 -KRILTGYDDGTIIVWNPKTGQ  223 (399)
T ss_pred             -ceEEEEecCceEEEEecCCCc
Confidence             699999999999999998875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.8e-29  Score=180.14  Aligned_cols=223  Identities=20%  Similarity=0.352  Sum_probs=192.1

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc------C---
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE------R---   74 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~------~---   74 (253)
                      .++.+++ | +.+||.++.+    +++..+.+|.     +.|+++.|+ +.+.++++++.|++..||...      .   
T Consensus       161 pi~gtASADhTA~iWs~Esg----~CL~~Y~GH~-----GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a  230 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLESG----ACLATYTGHT-----GSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNA  230 (481)
T ss_pred             cceeecccccceeEEeeccc----cceeeecccc-----cceeeEEec-cccceEEEccCCcchHHHHHhhcCcCCCCCC
Confidence            3666766 5 9999999999    9999999999     999999999 889999999999999999721      1   


Q ss_pred             -------------------------------ceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           75 -------------------------------EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        75 -------------------------------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                                                     ..++..+.+|...|.+..|. .++.+++++.|.+-.+||++++.   ++
T Consensus       231 ~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---~v  307 (481)
T KOG0300|consen  231 PSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE---VV  307 (481)
T ss_pred             CCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc---ee
Confidence                                           01345677899999999999 99999999999999999999998   45


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                      ....+|+...+.++-+| ..+++++++.|.. .++||++..-..+..|++|...|+++.|..+.  .+++|+.|.+|++|
T Consensus       308 ~~LtGHd~ELtHcstHp-tQrLVvTsSrDtT-FRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvW  383 (481)
T KOG0300|consen  308 NILTGHDSELTHCSTHP-TQRLVVTSSRDTT-FRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVW  383 (481)
T ss_pred             ccccCcchhccccccCC-cceEEEEeccCce-eEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEe
Confidence            55567888999999999 8899999999988 99999996656688999999999999999885  69999999999999


Q ss_pred             eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      |+++...|.       .......+++.++.+..++ +++.- .+..+++|+|
T Consensus       384 dLrNMRspl-------ATIRtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  384 DLRNMRSPL-------ATIRTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDL  427 (481)
T ss_pred             eeccccCcc-------eeeecCCccceeEeecCCc-eEEeccCCceEEEEec
Confidence            999988776       5566788999999998877 55554 4567999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.5e-29  Score=182.82  Aligned_cols=207  Identities=16%  Similarity=0.256  Sum_probs=169.4

Q ss_pred             eeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc------------------eeeeeeecccccEEEEE
Q 035558           31 SLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE------------------AVDTQLIAHDKEVYDIA   92 (253)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~   92 (253)
                      ..+..|+     +++.+.+|+ ++|.++++|+.|-.|+|.|++..                  -.++++-.|..+|+++.
T Consensus       106 ~ylt~HK-----~~cR~aafs-~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~  179 (430)
T KOG0640|consen  106 KYLTSHK-----SPCRAAAFS-PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD  179 (430)
T ss_pred             EEEeecc-----cceeeeeeC-CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence            4466777     899999999 99999999999999999998731                  14566778999999999


Q ss_pred             ec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe--ee
Q 035558           93 WG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV--VE  169 (253)
Q Consensus        93 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~--~~  169 (253)
                      |+ ....|++++.|++|++||+......+-.... ....+|.++.|+| .|.++++|..-.. +++||+.+.+.-+  ..
T Consensus       180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~-~rlYdv~T~QcfvsanP  256 (430)
T KOG0640|consen  180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPT-LRLYDVNTYQCFVSANP  256 (430)
T ss_pred             ecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecC-CCceEEEecCCCc-eeEEeccceeEeeecCc
Confidence            99 9999999999999999999876432222222 2223899999999 9999999887777 9999999865211  12


Q ss_pred             ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEEcCCCCceEEEEcCCcE
Q 035558          170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTKL  248 (253)
Q Consensus       170 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i  248 (253)
                      -..|.+.|+++.+++.+ ++.++++.||.|++||=-+.....      .....| +..|.+..|..+++++++.|.|..+
T Consensus       257 d~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~------t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  257 DDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVR------TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             ccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHH------HHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence            34688999999999999 699999999999999987766443      233345 5689999999999999999999999


Q ss_pred             EEEEC
Q 035558          249 QILRV  253 (253)
Q Consensus       249 ~vw~l  253 (253)
                      ++|++
T Consensus       330 kLWEi  334 (430)
T KOG0640|consen  330 KLWEI  334 (430)
T ss_pred             eeeee
Confidence            99986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.5e-28  Score=170.61  Aligned_cols=225  Identities=18%  Similarity=0.292  Sum_probs=184.9

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      -+|..|++++ + ++++|+++..  ........++|.     +.|-.++|+|++.+++++++.|.+|++||.+.+++...
T Consensus        30 ~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~-----~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~  102 (313)
T KOG1407|consen   30 CDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHT-----DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR  102 (313)
T ss_pred             ccCceeeecccCCceEEEEecch--hhhhhhcccCCC-----cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence            3678889888 6 9999999874  223334566777     88999999999999999999999999999999999988


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      .....+.+. +.|+ ++++++.++.|..|...|.++.+....    ......+..+.|+. +++++......|. |.|..
T Consensus       103 i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~----~~~~~e~ne~~w~~-~nd~Fflt~GlG~-v~ILs  175 (313)
T KOG1407|consen  103 IETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNE----EQFKFEVNEISWNN-SNDLFFLTNGLGC-VEILS  175 (313)
T ss_pred             eeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeeh----hcccceeeeeeecC-CCCEEEEecCCce-EEEEe
Confidence            875555554 6788 999999999999999999998763221    12233678899985 6666666666677 99988


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ....+ |+..+++|.....|+.|+|+| ++||+|+.|..+.+||+...-...       .+..+.-+|..++|+.+|++|
T Consensus       176 ypsLk-pv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R-------~isRldwpVRTlSFS~dg~~l  246 (313)
T KOG1407|consen  176 YPSLK-PVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICER-------CISRLDWPVRTLSFSHDGRML  246 (313)
T ss_pred             ccccc-cccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhhe-------eeccccCceEEEEeccCccee
Confidence            87644 699999999999999999999 799999999999999998876543       667789999999999999988


Q ss_pred             EEEEcCCcEEE
Q 035558          240 VAIAFSTKLQI  250 (253)
Q Consensus       240 ~~~~~~~~i~v  250 (253)
                      ++++.|..|-|
T Consensus       247 ASaSEDh~IDI  257 (313)
T KOG1407|consen  247 ASASEDHFIDI  257 (313)
T ss_pred             eccCccceEEe
Confidence            88888877654

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.6e-27  Score=193.22  Aligned_cols=218  Identities=19%  Similarity=0.309  Sum_probs=159.8

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccc----cceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEeCCCeEEEEecc
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRR----VELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSSIDTTCTIWDIE   73 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~   73 (253)
                      +|.++.+|++|+ | .|++|++..+...    ..+...+.+|.     ..|.+++|+ |++. .|++++.|++|++||++
T Consensus        83 sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~-----~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~  156 (568)
T PTZ00420         83 NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK-----KKISIIDWN-PMNYYIMCSSGFDSFVNIWDIE  156 (568)
T ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC-----CcEEEEEEC-CCCCeEEEEEeCCCeEEEEECC
Confidence            466678899988 4 9999999763111    12345678888     899999999 5554 56799999999999999


Q ss_pred             CceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeE-----EEeeCCCCCEEEE
Q 035558           74 REAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVR-----LGWNKQDPRYMAT  147 (253)
Q Consensus        74 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~l~~  147 (253)
                      +++....+. |...|.+++|+ ++.+|++++.|+.|++||+++++....+   ..|.+.+..     ..|++ ++.+|++
T Consensus       157 tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl---~gH~g~~~s~~v~~~~fs~-d~~~IlT  231 (568)
T PTZ00420        157 NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF---HIHDGGKNTKNIWIDGLGG-DDNYILS  231 (568)
T ss_pred             CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE---ecccCCceeEEEEeeeEcC-CCCEEEE
Confidence            988776665 66789999999 9999999999999999999998744333   344444332     23456 7888888


Q ss_pred             EEeCC---CeEEEEECCCCCCCeeeecccc--cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc
Q 035558          148 IIMDS---AKVVVLDIRFPTLPVVELQRHQ--ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT  222 (253)
Q Consensus       148 ~~~~~---~~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  222 (253)
                      ++.++   +.|++||++....++..+..+.  +.+.. .|.++.+.++++|+.|++|++|++..+....      .....
T Consensus       232 tG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~------l~~~~  304 (568)
T PTZ00420        232 TGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSIRK------VNEYK  304 (568)
T ss_pred             EEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcEEe------ecccc
Confidence            88775   2499999997666666554322  22222 3444433789999999999999998754221      23344


Q ss_pred             CCCceeEEEEcCCC
Q 035558          223 AGAEIEQLQWSSSQ  236 (253)
Q Consensus       223 ~~~~v~~~~~~~~~  236 (253)
                      +..+..+++|.|..
T Consensus       305 s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        305 SCSPFRSFGFLPKQ  318 (568)
T ss_pred             cCCCccceEEcccc
Confidence            67888899999974

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.7e-29  Score=188.39  Aligned_cols=228  Identities=18%  Similarity=0.264  Sum_probs=185.3

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +...|++++ | .|++|+....  ......++.+..     ++|+++.|. +++..+++++.|+.+++|++...+...++
T Consensus       186 ~sdtlatgg~Dr~Ik~W~v~~~--k~~~~~tLaGs~-----g~it~~d~d-~~~~~~iAas~d~~~r~Wnvd~~r~~~TL  257 (459)
T KOG0288|consen  186 NSDTLATGGSDRIIKLWNVLGE--KSELISTLAGSL-----GNITSIDFD-SDNKHVIAASNDKNLRLWNVDSLRLRHTL  257 (459)
T ss_pred             Ccchhhhcchhhhhhhhhcccc--hhhhhhhhhccC-----CCcceeeec-CCCceEEeecCCCceeeeeccchhhhhhh
Confidence            446778877 6 9999999874  245788888887     899999999 77888888999999999999999999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      .+|++.|+++.|. ....+++|+.|.+|++||+....+.+.+...    ..+..+..+   ...++++..|+. |++||.
T Consensus       258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~---~~~~~SgH~Dkk-vRfwD~  329 (459)
T KOG0288|consen  258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCS---ISDVISGHFDKK-VRFWDI  329 (459)
T ss_pred             cccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc----ccccceEec---ceeeeecccccc-eEEEec
Confidence            9999999999999 5556999999999999999987765554332    255556654   467888888998 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      +.... ......+. .|+++..++++ ..|.+++.|.++.+.|+++.....   ......+.-....+.+.|||++.|++
T Consensus       330 Rs~~~-~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~---~~sA~g~k~asDwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  330 RSADK-TRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQ---TFSAEGFKCASDWTRVVFSPDGSYVA  403 (459)
T ss_pred             cCCce-eeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEE---EeeccccccccccceeEECCCCceee
Confidence            98663 66666654 89999999999 688888999999999999876432   00011112234489999999999999


Q ss_pred             EEEcCCcEEEEEC
Q 035558          241 AIAFSTKLQILRV  253 (253)
Q Consensus       241 ~~~~~~~i~vw~l  253 (253)
                      +|+.|+.|+||++
T Consensus       404 AGS~dgsv~iW~v  416 (459)
T KOG0288|consen  404 AGSADGSVYIWSV  416 (459)
T ss_pred             eccCCCcEEEEEc
Confidence            9999999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.1e-29  Score=207.47  Aligned_cols=234  Identities=19%  Similarity=0.361  Sum_probs=194.2

Q ss_pred             eEEeecC--cEEEEEccC--CccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            7 LLATSSD--FLRVWRISD--EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         7 ~l~~~~~--~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +||+|.+  .|.+||...  .......+.+...|+     ++|..+.|++..+++||+|+.||.|.|||+...+.-..+.
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-----G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~  156 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT-----GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG  156 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccC-----CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC
Confidence            5777764  999999876  235567788888898     9999999997778899999999999999998755433331


Q ss_pred             --cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEE
Q 035558           83 --AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVV  156 (253)
Q Consensus        83 --~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~  156 (253)
                        ...+.|.+++|+  ....|++++.+|++.|||++..+.+..+... .....+..++|||+....+++++.|.+  .|.
T Consensus       157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq  235 (1049)
T KOG0307|consen  157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ  235 (1049)
T ss_pred             CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence              245789999999  7789999999999999999988643333222 222468899999988889999888774  599


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      +||+|....+++.+.+|...|.+|.|++.++.+|++++.|+.|.+|+.++++...       .+...++.+..+.|.|..
T Consensus       236 lWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~-------~~p~~~nW~fdv~w~pr~  308 (1049)
T KOG0307|consen  236 LWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG-------ELPAQGNWCFDVQWCPRN  308 (1049)
T ss_pred             eecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee-------ecCCCCcceeeeeecCCC
Confidence            9999998889999999999999999999987899999999999999999987554       555578899999999998


Q ss_pred             CceE-EEEcCCcEEEEEC
Q 035558          237 PDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~~~-~~~~~~~i~vw~l  253 (253)
                      +.++ +++.||.|.|+.+
T Consensus       309 P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  309 PSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             cchhhhheeccceeeeee
Confidence            8544 6888999999864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=6.6e-28  Score=173.18  Aligned_cols=211  Identities=16%  Similarity=0.272  Sum_probs=167.5

Q ss_pred             eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce------------e---eeeeecccccEEEEEec--
Q 035558           32 LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA------------V---DTQLIAHDKEVYDIAWG--   94 (253)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~---~~~~~~~~~~v~~~~~~--   94 (253)
                      ..+.|.     +.|+++...+..++++++|+.||.|.+||++...            +   ...-.+|+-.|.++.|-  
T Consensus        38 ~~r~Hg-----GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   38 FVRPHG-----GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             eeccCC-----CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence            345566     8999999998899999999999999999998643            1   01123688899999998  


Q ss_pred             CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC--CEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558           95 GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP--RYMATIIMDSAKVVVLDIRFPTLPVVELQR  172 (253)
Q Consensus        95 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  172 (253)
                      +...|.+++.|.++++||..+.+....+    .-++.|++-+|+|-..  .++|+|..+-. |++.|+..+.. -+.+.+
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F----~me~~VYshamSp~a~sHcLiA~gtr~~~-VrLCDi~SGs~-sH~LsG  186 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDF----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQ-VRLCDIASGSF-SHTLSG  186 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEe----ecCceeehhhcChhhhcceEEEEecCCCc-EEEEeccCCcc-eeeecc
Confidence            8899999999999999999988743322    2334788888888433  34555555555 99999998774 899999


Q ss_pred             cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC------CCCCC--CeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV------EGGLD--PILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                      |...|.++.|+|..+..|++|+.||.|++||++....-+      .....  ......|.+.+++++|+.++.++++++.
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            999999999999988889999999999999998763111      00011  1234578999999999999999999999


Q ss_pred             CCcEEEEEC
Q 035558          245 STKLQILRV  253 (253)
Q Consensus       245 ~~~i~vw~l  253 (253)
                      |+.+++|++
T Consensus       267 d~r~r~wn~  275 (397)
T KOG4283|consen  267 DDRIRVWNM  275 (397)
T ss_pred             ccceEEeec
Confidence            999999974

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.1e-27  Score=195.71  Aligned_cols=237  Identities=18%  Similarity=0.320  Sum_probs=192.0

Q ss_pred             CCCceEEeecC--cEEEEEccCC--------------ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe
Q 035558            3 QKPDLLATSSD--FLRVWRISDE--------------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT   66 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   66 (253)
                      +||.+||+|+|  .|.||.....              .+.++....+.+|.     ..|..++|+ |++.+|++++.|++
T Consensus        79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-----~DV~Dv~Ws-p~~~~lvS~s~Dns  152 (942)
T KOG0973|consen   79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-----SDVLDVNWS-PDDSLLVSVSLDNS  152 (942)
T ss_pred             CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-----CccceeccC-CCccEEEEecccce
Confidence            68999999997  8899998730              23467888999999     899999999 79999999999999


Q ss_pred             EEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC---CCCCeeEEEeeCCCC
Q 035558           67 CTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE---PDTPLVRLGWNKQDP  142 (253)
Q Consensus        67 i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~  142 (253)
                      |.+||..+.+.+..+++|.+.|..+.|. -|++|++-+.|++|++|++..-...+.+..+..   .......+.|+| +|
T Consensus       153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG  231 (942)
T KOG0973|consen  153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DG  231 (942)
T ss_pred             EEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-Cc
Confidence            9999999999999999999999999999 999999999999999999776554444443322   234678899999 99


Q ss_pred             CEEEEEEeCC---CeEEEEECCCCCCCeeeecccccceeEEEEecC--------C----CC----eEEEecCCCcEEEEe
Q 035558          143 RYMATIIMDS---AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH--------S----SC----HICTAGDDSQALIWD  203 (253)
Q Consensus       143 ~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------~----~~----~l~~~~~dg~i~iwd  203 (253)
                      .+|++...-+   ..+.|.+-.+.+ .-..+.+|.+++.+++|+|.        |    +.    .+|+|+.|++|.||.
T Consensus       232 ~~las~nA~n~~~~~~~IieR~tWk-~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  232 HHLASPNAVNGGKSTIAIIERGTWK-VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             CeecchhhccCCcceeEEEecCCce-eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence            9999865322   247788775544 36788899999999999981        1    11    578999999999999


Q ss_pred             ccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          204 LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ....+...      ....-....|.+++|+|+|-.|++++.||.|.++++
T Consensus       311 T~~~RPl~------vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  311 TALPRPLF------VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             cCCCCchh------hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence            86544221      111123778999999999999999999999998763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=7.7e-29  Score=180.41  Aligned_cols=199  Identities=15%  Similarity=0.262  Sum_probs=168.3

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--------cccccEEEEEec-CCCeEEEEeCCCcEEEEEc
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDL  113 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~  113 (253)
                      .-+-|..|+ |++++|++|+.||.|.+||..+|+....++        -+..+|.|+.|+ +...+++|+.||.|++|.+
T Consensus       214 Sh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  214 SHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             cchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            567789999 999999999999999999999998655443        367899999999 9999999999999999999


Q ss_pred             CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      +++.+.+.+.  ..|...|+++.|+. ++..+++++.|.. +++--+.+++ .++++++|...|+...|.++| ..++++
T Consensus       293 ~tG~ClRrFd--rAHtkGvt~l~FSr-D~SqiLS~sfD~t-vRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG-~~iisa  366 (508)
T KOG0275|consen  293 ETGQCLRRFD--RAHTKGVTCLSFSR-DNSQILSASFDQT-VRIHGLKSGK-CLKEFRGHSSYVNEATFTDDG-HHIISA  366 (508)
T ss_pred             ecchHHHHhh--hhhccCeeEEEEcc-Ccchhhcccccce-EEEeccccch-hHHHhcCccccccceEEcCCC-CeEEEe
Confidence            9998655443  25667999999999 8899999999998 9999999876 599999999999999999999 699999


Q ss_pred             cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558          194 GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV  253 (253)
Q Consensus       194 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l  253 (253)
                      +.||+|++|+..+.+...     .....+...+|+++-.-|.++ .++.+...+.+.|.++
T Consensus       367 SsDgtvkvW~~KtteC~~-----Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~  422 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLS-----TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM  422 (508)
T ss_pred             cCCccEEEecCcchhhhh-----hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence            999999999999877554     123334667888888777654 5667777888877654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=8.1e-27  Score=168.17  Aligned_cols=212  Identities=23%  Similarity=0.305  Sum_probs=163.3

Q ss_pred             CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      +|..+.+|+++-| ++++|++...    .+...+ .|.     .++++++|.  +...+++|+.||.|+.+|+.+++...
T Consensus        22 ~~~~~~LLvssWDgslrlYdv~~~----~l~~~~-~~~-----~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   22 SPSSSDLLVSSWDGSLRLYDVPAN----SLKLKF-KHG-----APLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             cCcCCcEEEEeccCcEEEEeccch----hhhhhe-ecC-----Cceeeeecc--CCceEEEeccCceEEEEEecCCccee
Confidence            3677888888888 9999999884    444444 355     799999997  47789999999999999999887554


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                       +..|..+|.++.+. ..+.+++|+.|++|++||.+........    .....|.++..   .++.|++|+.+.. +.+|
T Consensus        90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~----d~~kkVy~~~v---~g~~LvVg~~~r~-v~iy  160 (323)
T KOG1036|consen   90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF----DQGKKVYCMDV---SGNRLVVGTSDRK-VLIY  160 (323)
T ss_pred             -eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc----ccCceEEEEec---cCCEEEEeecCce-EEEE
Confidence             45699999999999 8889999999999999999974321111    22226777765   4667777777777 8888


Q ss_pred             ECCCCCCC-----------------------------------------------eeeecccc---------cceeEEEE
Q 035558          159 DIRFPTLP-----------------------------------------------VVELQRHQ---------ASVNAIAW  182 (253)
Q Consensus       159 d~~~~~~~-----------------------------------------------~~~~~~~~---------~~i~~~~~  182 (253)
                      |+|+...+                                               ...++.|.         -+|++++|
T Consensus       161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            88765431                                               12233443         27999999


Q ss_pred             ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      +|-. ..|+||+.||.|.+||+.+.+...       .+......|.+++|+.+|..|+.
T Consensus       241 hp~~-~tfaTgGsDG~V~~Wd~~~rKrl~-------q~~~~~~SI~slsfs~dG~~LAi  291 (323)
T KOG1036|consen  241 HPIH-GTFATGGSDGIVNIWDLFNRKRLK-------QLAKYETSISSLSFSMDGSLLAI  291 (323)
T ss_pred             cccc-ceEEecCCCceEEEccCcchhhhh-------hccCCCCceEEEEeccCCCeEEE
Confidence            9987 599999999999999999887654       55555678999999999985543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-26  Score=167.21  Aligned_cols=242  Identities=19%  Similarity=0.307  Sum_probs=184.5

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCc-----
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIERE-----   75 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-----   75 (253)
                      -|+.+|+|+ | +|+|||.+.....+.+....+.|.     +.|..+.|.+| -|+.+|+++.|+++.||.-...     
T Consensus        24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~-----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~   98 (361)
T KOG2445|consen   24 YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD-----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH   98 (361)
T ss_pred             cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC-----CcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence            467788877 6 999999877667788889999999     99999999655 4889999999999999976321     


Q ss_pred             ----eeeeeeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCee----------eeeccCCCCCCeeEEEee
Q 035558           76 ----AVDTQLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHST----------IIYESSEPDTPLVRLGWN  138 (253)
Q Consensus        76 ----~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~i~~~~~~  138 (253)
                          ....++......|++++|.   -|-.+++++.||++|||+.-......          .+..+..+..+..|+.|+
T Consensus        99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn  178 (361)
T KOG2445|consen   99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWN  178 (361)
T ss_pred             cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeec
Confidence                1344566678899999998   67799999999999999876543211          111233455688999999


Q ss_pred             CC--CCCEEEEEEeC-----CCeEEEEECCCCC---CCeeeecccccceeEEEEecCCC---CeEEEecCCCcEEEEecc
Q 035558          139 KQ--DPRYMATIIMD-----SAKVVVLDIRFPT---LPVVELQRHQASVNAIAWAPHSS---CHICTAGDDSQALIWDLS  205 (253)
Q Consensus       139 ~~--~~~~l~~~~~~-----~~~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~iwd~~  205 (253)
                      |.  ...+||+|+.+     +. ++||......   ..+.++..|..+|+.++|.|+-.   ++|++++.|| |+||.++
T Consensus       179 ~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~  256 (361)
T KOG2445|consen  179 PSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK  256 (361)
T ss_pred             cccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence            74  24678888766     24 8888765543   23567789999999999999643   3789999999 9999998


Q ss_pred             CCCCCCCC-------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          206 SMGQPVEG-------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       206 ~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ....+..+             ......+.+|..+|..+.|+-.|..|.+.|.||.+|+|+
T Consensus       257 ~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  257 VARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             eccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            53322100             011223557999999999999999888999999999997

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.4e-28  Score=180.87  Aligned_cols=208  Identities=17%  Similarity=0.356  Sum_probs=170.8

Q ss_pred             eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcE
Q 035558           29 LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSV  108 (253)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i  108 (253)
                      .+..+.+|.     +.|.+++=+|..-..+++|+.||.|++||+.+.++...+++|.+.|..|++.. ..+++++.|.+|
T Consensus        58 Fv~~L~gHr-----dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtv  131 (433)
T KOG0268|consen   58 FVGSLDGHR-----DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTV  131 (433)
T ss_pred             chhhccccc-----cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcce
Confidence            345678898     89999999965558899999999999999999999999999999999999964 778899999999


Q ss_pred             EEEEcCCCCCeee---------------------------ee---------ccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558          109 RVFDLRDKEHSTI---------------------------IY---------ESSEPDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus       109 ~i~d~~~~~~~~~---------------------------~~---------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      +.|.+..+. ...                           ++         ...-....|.++.|+|....+|++++.|+
T Consensus       132 K~wk~~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  132 KQWKIDGPP-LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             eeeeccCCc-ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            999854321 000                           00         01111236788999997778888888999


Q ss_pred             CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      + |.+||+|+.. |++.+.. ...-+.++|+|.+ ..+++|++|..++.||++....|.      ....+|.+.|.++.|
T Consensus       211 s-IvLyD~R~~~-Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~------~v~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  211 S-IVLYDLRQAS-PLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPL------NVHKDHVSAVMDVDF  280 (433)
T ss_pred             c-eEEEecccCC-ccceeee-eccccceecCccc-cceeeccccccceehhhhhhcccc------hhhcccceeEEEecc
Confidence            8 9999999866 4554432 3445789999976 689999999999999999998776      677899999999999


Q ss_pred             cCCCCceEEEEcCCcEEEEEC
Q 035558          233 SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|.|+.+++++.|..|+||.+
T Consensus       281 sptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  281 SPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             CCCcchhccccccceEEEeec
Confidence            999999999999999999974

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.1e-26  Score=164.26  Aligned_cols=221  Identities=16%  Similarity=0.275  Sum_probs=174.1

Q ss_pred             ceEEeec--C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            6 DLLATSS--D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         6 ~~l~~~~--~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      .++.+..  | +||..++.++    +.++.+.||.     ..|++++.+ |-++.+++++.|++|++||++..++...+.
T Consensus        70 ~~i~sStk~d~tIryLsl~dN----kylRYF~GH~-----~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~  139 (311)
T KOG1446|consen   70 TVIHSSTKEDDTIRYLSLHDN----KYLRYFPGHK-----KRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLN  139 (311)
T ss_pred             eEEEccCCCCCceEEEEeecC----ceEEEcCCCC-----ceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEe
Confidence            3444444  4 9999999998    9999999999     899999999 566889999999999999999887776665


Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC-Ce-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE-HS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ....+|  .+|. .|-++|++...+.|++||+|.-. .+ ..+..........+.+.|+| +|++|+.+...+. +++.|
T Consensus       140 ~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~-~~~lD  215 (311)
T KOG1446|consen  140 LSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASF-IYLLD  215 (311)
T ss_pred             cCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCc-EEEEE
Confidence            444444  6888 88899999888899999999753 22 22222224456899999999 9999999998888 99999


Q ss_pred             CCCCCCCeeeecccccc---eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc-CCCceeEEEEcCC
Q 035558          160 IRFPTLPVVELQRHQAS---VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQLQWSSS  235 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  235 (253)
                      .-.+.. ...+..+...   -.+..|.|++ +++++|+.||+|.+|+++++.+..       ...+ +..++.++.|+|.
T Consensus       216 Af~G~~-~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~v~-------~~~~~~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  216 AFDGTV-KSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKKVA-------VLRGPNGGPVSCVRFNPR  286 (311)
T ss_pred             ccCCcE-eeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcEee-------EecCCCCCCccccccCCc
Confidence            988763 5566554432   2577899999 799999999999999999887654       4444 7899999999998


Q ss_pred             CCceEEEEcCCcEEEE
Q 035558          236 QPDWVAIAFSTKLQIL  251 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw  251 (253)
                      ..  ..++.+..+.+|
T Consensus       287 ~~--mf~sa~s~l~fw  300 (311)
T KOG1446|consen  287 YA--MFVSASSNLVFW  300 (311)
T ss_pred             ee--eeeecCceEEEE
Confidence            54  444555667776

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.1e-26  Score=173.01  Aligned_cols=227  Identities=18%  Similarity=0.231  Sum_probs=186.0

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      ...+++++ + .|+||.....    ........|.     ++|+.+..+ +++.+|++++.||+..+.|++++..+....
T Consensus       273 ~~~v~~aSad~~i~vws~~~~----s~~~~~~~h~-----~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs  342 (506)
T KOG0289|consen  273 LDTVITASADEIIRVWSVPLS----SEPTSSRPHE-----EPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVS  342 (506)
T ss_pred             hhheeecCCcceEEeeccccc----cCcccccccc-----ccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEe
Confidence            33455555 6 9999999886    5667778898     899999999 899999999999999999999998776665


Q ss_pred             c--ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           83 A--HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        83 ~--~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      .  ..-.+++.+|+ ||.+|.+|..||.|++||+.++.   .....++|.++|..++|+. +|.++++++.|+. |++||
T Consensus       343 ~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~-V~lwD  417 (506)
T KOG0289|consen  343 DETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAKFPGHTGPVKAISFSE-NGYWLATAADDGS-VKLWD  417 (506)
T ss_pred             eccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc---ccccCCCCCCceeEEEecc-CceEEEEEecCCe-EEEEE
Confidence            3  23458999999 99999999999999999999887   4555567999999999999 9999999999999 99999


Q ss_pred             CCCCCCCeeeeccc-ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          160 IRFPTLPVVELQRH-QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      +|+.+. .+++... ...+.++.|.+.| ++|+.++.|=.|++++-.+.+-..     ...+..|.+..+.+.|....++
T Consensus       418 LRKl~n-~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~-----~~~~~~~sg~st~v~Fg~~aq~  490 (506)
T KOG0289|consen  418 LRKLKN-FKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTE-----IKELADHSGLSTGVRFGEHAQY  490 (506)
T ss_pred             ehhhcc-cceeeccccccceeEEEcCCC-CeEEeecceeEEEEEeccccccee-----eehhhhcccccceeeecccceE
Confidence            998764 5555432 2379999999999 799999887666666644433221     2355678889999999999988


Q ss_pred             eEEEEcCCcEEEEEC
Q 035558          239 WVAIAFSTKLQILRV  253 (253)
Q Consensus       239 ~~~~~~~~~i~vw~l  253 (253)
                      +++++.|..++++.+
T Consensus       491 l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  491 LASTSMDAILRLYAL  505 (506)
T ss_pred             EeeccchhheEEeec
Confidence            889999999888753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.7e-27  Score=176.33  Aligned_cols=235  Identities=15%  Similarity=0.166  Sum_probs=188.4

Q ss_pred             CceEEeec--C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            5 PDLLATSS--D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~--~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +.+++++.  . .+.+|.+...    .......--.     ++|.+++-+ ++|.+|+.|+..|.|++|.+.+|.++..+
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~----~~~~q~~v~P-----g~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~  119 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKK----DQVVQYIVLP-----GPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVL  119 (476)
T ss_pred             hhheeeecccCccccccccCch----hhhhhhcccc-----cceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHH
Confidence            34566665  3 8999998764    2111111112     689999998 89999999989999999999999999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC------CCeeeeeccCCCCCCeeEEEeeCC-CCCEEEEEEeCCC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK------EHSTIIYESSEPDTPLVRLGWNKQ-DPRYMATIIMDSA  153 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~  153 (253)
                      .+|-..|+++.|+ ++.+|++|+.||.|.+|.+..-      ..+..+.....|.-+|+.+...+. ....+++++.|..
T Consensus       120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t  199 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT  199 (476)
T ss_pred             HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence            9999999999999 9999999999999999987431      134556666788889999998774 4578999999998


Q ss_pred             eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC---------CCCCCCeeeccCC
Q 035558          154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV---------EGGLDPILAYTAG  224 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~~  224 (253)
                       +++||+..+.. +..+. ....+.+++.+|.+ +.++.|+.+|.|.+.++.......         ........+.+|.
T Consensus       200 -~k~wdlS~g~L-Llti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~  275 (476)
T KOG0646|consen  200 -IKLWDLSLGVL-LLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE  275 (476)
T ss_pred             -EEEEEecccee-eEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence             99999998764 33333 35789999999998 799999999999999887654111         2223345677887


Q ss_pred             C--ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          225 A--EIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       225 ~--~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +  +|++++.+-||..|++++.||.+.||++
T Consensus       276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  276 NESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             CCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            7  9999999999999999999999999985

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.8e-29  Score=198.13  Aligned_cols=215  Identities=20%  Similarity=0.333  Sum_probs=185.7

Q ss_pred             CceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      .+.+++|+.  .+-+|.+...    ..+..+.+|.     .+|.++.|+ ....+|++|+.+|+|++||++.++.++++.
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp----~~i~S~~~he-----spIeSl~f~-~~E~LlaagsasgtiK~wDleeAk~vrtLt  109 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKP----NAITSLTGHE-----SPIESLTFD-TSERLLAAGSASGTIKVWDLEEAKIVRTLT  109 (825)
T ss_pred             ceeeccCCCceeeccccccCC----chhheeeccC-----CcceeeecC-cchhhhcccccCCceeeeehhhhhhhhhhh
Confidence            467788875  7889999876    6666789999     999999999 888999999999999999999999999999


Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      +|...+..+.|+ -+.++++|+.|+-+++||++...+....   .+|...+..++|+| +|.+++.++.|.. +++||+.
T Consensus       110 gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~---~s~~~vv~~l~lsP-~Gr~v~~g~ed~t-vki~d~~  184 (825)
T KOG0267|consen  110 GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY---KSHTRVVDVLRLSP-DGRWVASGGEDNT-VKIWDLT  184 (825)
T ss_pred             ccccCcceeeeccceEEeccccccccceehhhhccCceeee---cCCcceeEEEeecC-CCceeeccCCcce-eeeeccc
Confidence            999999999999 9999999999999999999977654333   34666899999999 9999999999888 9999998


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      .++. ...|..|++.+.++.|+|.. .++++|+.|+++++||+++.....       ........|.+++|+|++..+++
T Consensus       185 agk~-~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~-------s~~~~~~~v~~~~fn~~~~~~~~  255 (825)
T KOG0267|consen  185 AGKL-SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVIS-------SGKPETDGVRSLAFNPDGKIVLS  255 (825)
T ss_pred             cccc-ccccccccccccccccCchh-hhhccCCCCceeeeeccceeEEee-------ccCCccCCceeeeecCCceeeec
Confidence            8764 88999999999999999997 689999999999999999765332       22334778999999999985555


Q ss_pred             EE
Q 035558          242 IA  243 (253)
Q Consensus       242 ~~  243 (253)
                      +.
T Consensus       256 G~  257 (825)
T KOG0267|consen  256 GE  257 (825)
T ss_pred             Cc
Confidence            43

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7.6e-27  Score=176.37  Aligned_cols=223  Identities=15%  Similarity=0.272  Sum_probs=181.4

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+||+|+ + .|.||+.++.    +.+..+.+|.     +.|.+++|- ...+.+++++.|+.|++|+++....+.+
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~----ehv~~~~ghr-----~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTL----EHVKVFKGHR-----GAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             CCCcEEEecCCCceEEEecCccc----chhhcccccc-----cceeeeeee-cCccceeeeecCCceEEEehhHhHHHHH
Confidence            5788999998 4 9999999997    8889999999     999999998 7778899999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|.+.|.++... ..+.+-+|+.|+++++|++....  +.++.  ++.+.+-|++|-  +...+++|+.+|. |.+|+
T Consensus       282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifr--g~~~sidcv~~I--n~~HfvsGSdnG~-IaLWs  354 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFR--GGEGSIDCVAFI--NDEHFVSGSDNGS-IALWS  354 (479)
T ss_pred             HhCCccceeeechhcccceEEeccccceeEEEeccccc--eeeee--CCCCCeeeEEEe--cccceeeccCCce-EEEee
Confidence            99999999999988 77777777799999999995443  34443  446689999998  6789999999998 99999


Q ss_pred             CCCCCCCeeeec-cc-----------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          160 IRFPTLPVVELQ-RH-----------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       160 ~~~~~~~~~~~~-~~-----------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      +.+.+ |+.... +|           ...|++++..|.. .++++|+.+|.|++|-+..+-...    .+.....-.+.|
T Consensus       355 ~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i----~~l~~ls~~GfV  428 (479)
T KOG0299|consen  355 LLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAI----NLLYSLSLVGFV  428 (479)
T ss_pred             ecccC-ceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCcccc----ceeeecccccEE
Confidence            98755 444332 22           2268999999988 599999999999999999875432    123444567899


Q ss_pred             eEEEEcCCCCceEEE-EcCCcE
Q 035558          228 EQLQWSSSQPDWVAI-AFSTKL  248 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~-~~~~~i  248 (253)
                      ++++|+++|+.++++ +....+
T Consensus       429 Nsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  429 NSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             EEEEEccCCCEEEEeccccccc
Confidence            999999999966653 444433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=4.7e-26  Score=160.88  Aligned_cols=213  Identities=17%  Similarity=0.282  Sum_probs=177.8

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +|+.++++++++ + +|++||...+    ++........     +.| -+.|+ |++.+++.+..|..|...|.++.+..
T Consensus        73 ~~~~~d~~atas~dk~ir~wd~r~~----k~~~~i~~~~-----eni-~i~ws-p~g~~~~~~~kdD~it~id~r~~~~~  141 (313)
T KOG1407|consen   73 DPKHPDLFATASGDKTIRIWDIRSG----KCTARIETKG-----ENI-NITWS-PDGEYIAVGNKDDRITFIDARTYKIV  141 (313)
T ss_pred             CCCCCcceEEecCCceEEEEEeccC----cEEEEeeccC-----cce-EEEEc-CCCCEEEEecCcccEEEEEeccccee
Confidence            477888888877 5 9999999987    7776665554     344 57899 88999999999999999999987766


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ...+ ....+..++|+ ++++|......|+|.|.....-+   .+.....|...+.|+.|+| +|+++|+|+.|.. +.+
T Consensus       142 ~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk---pv~si~AH~snCicI~f~p-~GryfA~GsADAl-vSL  215 (313)
T KOG1407|consen  142 NEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK---PVQSIKAHPSNCICIEFDP-DGRYFATGSADAL-VSL  215 (313)
T ss_pred             ehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccc---cccccccCCcceEEEEECC-CCceEeeccccce-eec
Confidence            6554 45678889999 88888777778999999887665   4445567777999999999 9999999999998 999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ||+...- ++..+..+.-+|..+.|+.+| ++||+||+|..|-|=+++++.+.        ....+.++...|+|+|...
T Consensus       216 WD~~ELi-C~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd~~--------~eI~~~~~t~tVAWHPk~~  285 (313)
T KOG1407|consen  216 WDVDELI-CERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGDRV--------WEIPCEGPTFTVAWHPKRP  285 (313)
T ss_pred             cChhHhh-hheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCCeE--------EEeeccCCceeEEecCCCc
Confidence            9998754 578888899999999999999 79999999999999999998743        5556889999999999987


Q ss_pred             ceE
Q 035558          238 DWV  240 (253)
Q Consensus       238 ~~~  240 (253)
                      .|+
T Consensus       286 LLA  288 (313)
T KOG1407|consen  286 LLA  288 (313)
T ss_pred             eee
Confidence            444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=9.1e-27  Score=172.15  Aligned_cols=205  Identities=17%  Similarity=0.283  Sum_probs=166.2

Q ss_pred             CCeeEEEecCC-CCCEEEEEeCCCeEEEEeccC----------------ceeeeeeecccccEEEEEec--CCCeEEEEe
Q 035558           43 GPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIER----------------EAVDTQLIAHDKEVYDIAWG--GVGVFASVS  103 (253)
Q Consensus        43 ~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~  103 (253)
                      +.++.+.-++. +..+.++-+..|.|+||++..                .+++.++.+|...=+.|+|+  ....|++|.
T Consensus       152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD  231 (440)
T KOG0302|consen  152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD  231 (440)
T ss_pred             cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence            66666666643 556777788999999999864                13566778899999999999  556688888


Q ss_pred             CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEE
Q 035558          104 ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAW  182 (253)
Q Consensus       104 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~  182 (253)
                      --+.|++|...++.-..-.....+|+..|-.++|+|.....|++|+-|+. |+|||+|... .+....++|.+.|+.+.|
T Consensus       232 c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVNVISW  310 (440)
T KOG0302|consen  232 CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVNVISW  310 (440)
T ss_pred             cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCceeeEEc
Confidence            88889999998865333333445688899999999988999999999999 9999999873 344555889999999999


Q ss_pred             ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc-eEEEEcCCcEEEEEC
Q 035558          183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD-WVAIAFSTKLQILRV  253 (253)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw~l  253 (253)
                      +..-+ +|++|+.||+++|||++..+...    ....+..|..+|++|.|+|.... +++++.|++|.+|+|
T Consensus       311 nr~~~-lLasG~DdGt~~iwDLR~~~~~~----pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  311 NRREP-LLASGGDDGTLSIWDLRQFKSGQ----PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             cCCcc-eeeecCCCceEEEEEhhhccCCC----cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            99985 99999999999999999866321    23567789999999999997654 557889999999996

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-26  Score=175.97  Aligned_cols=211  Identities=15%  Similarity=0.191  Sum_probs=174.7

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC------
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER------   74 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------   74 (253)
                      ++|.+|++|. . .+++|.+.++    .++..+.+|-     .+|+++.|+ .++.+|++|+.||.|.+|.+.+      
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG----~LL~v~~aHY-----Q~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSG----ILLNVLSAHY-----QSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccc----cHHHHHHhhc-----cceeEEEEe-CCCcEEEecCCCccEEEEEEEeeccccc
Confidence            5788888885 3 9999999999    9999999998     899999999 9999999999999999998743      


Q ss_pred             ---ceeeeeeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           75 ---EAVDTQLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        75 ---~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                         -++...+..|+-+|+++...   ....++|++.|.++++||+..+.....+..    ...+.+++.+| .+..+.+|
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDp-ae~~~yiG  235 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDP-AERVVYIG  235 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEcc-cccEEEec
Confidence               24677888999999999988   356899999999999999999975444432    23899999999 89999999


Q ss_pred             EeCCCeEEEEECCCCC---------------CCeeeeccccc--ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC
Q 035558          149 IMDSAKVVVLDIRFPT---------------LPVVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV  211 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~---------------~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  211 (253)
                      +.+|. |.+.++.+..               ..+..+.+|.+  .|+|++.+-|| .+|++|+.||.+.|||+.+.+...
T Consensus       236 t~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iR  313 (476)
T KOG0646|consen  236 TEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIR  313 (476)
T ss_pred             CCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHH
Confidence            99998 8888775432               12455677887  99999999999 699999999999999999876543


Q ss_pred             CCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          212 EGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                             ......++|+.+.+.|-.+
T Consensus       314 -------tl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  314 -------TLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             -------HHhhhccccceeEeecccc
Confidence                   3333577888888866543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=1.5e-26  Score=174.77  Aligned_cols=204  Identities=15%  Similarity=0.234  Sum_probs=167.9

Q ss_pred             CCeeEEEecCCCC-CEEEEEeCCCeEEEEeccCce----eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCC
Q 035558           43 GPLTSFDWNEAEP-RRIGTSSIDTTCTIWDIEREA----VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRD  115 (253)
Q Consensus        43 ~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~  115 (253)
                      .+|++++|+|... +++++|+..|.|-+||+.+.+    -+..+..|..+|.+|.|+  +...+++.+.||+|++-|++.
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~  266 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG  266 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence            8999999997655 789999999999999995322    344566899999999999  888999999999999999987


Q ss_pred             CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558          116 KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       116 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      ..... ++........+..+.|+. +...++.+..-|. ..+||+|+.......+..|...|.+|+++|..+.+|+|+|.
T Consensus       267 ~i~e~-v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~-f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~  343 (498)
T KOG4328|consen  267 NISEE-VLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGN-FNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL  343 (498)
T ss_pred             hhhHH-HhhcCccceeeeeccccC-CCccEEEeecccc-eEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence            75322 222223444778888988 5556666666666 99999999886677788899999999999999999999999


Q ss_pred             CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          196 DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       196 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |++.+|||++......   ........|...|.+..|||.+..+++.+.|+.|+||+
T Consensus       344 D~T~kIWD~R~l~~K~---sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  344 DQTAKIWDLRQLRGKA---SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             CcceeeeehhhhcCCC---CcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            9999999999865332   11245668999999999999998899999999999997

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.7e-26  Score=172.16  Aligned_cols=240  Identities=15%  Similarity=0.202  Sum_probs=182.3

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeee---ec-------CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEE
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSL---LN-------GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIW   70 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~---~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw   70 (253)
                      ++..+..+++ + +|.=|++.++...-.....   ++       .+. ..|...+.+++.+ +++++|++|+.|..|.||
T Consensus       152 ~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS-~Dgkylatgg~d~~v~Iw  229 (479)
T KOG0299|consen  152 PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVS-SDGKYLATGGRDRHVQIW  229 (479)
T ss_pred             ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEc-CCCcEEEecCCCceEEEe
Confidence            4455566665 5 9999998776211000000   11       111 1333789999999 999999999999999999


Q ss_pred             eccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           71 DIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        71 d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      +.++.+.++.+.+|.+.|.+++|- ..+.+++++.|++|++|++.....   +....+|...|..+.-.. .++.+-+|+
T Consensus       230 ~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~---vetlyGHqd~v~~IdaL~-reR~vtVGg  305 (479)
T KOG0299|consen  230 DCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY---VETLYGHQDGVLGIDALS-RERCVTVGG  305 (479)
T ss_pred             cCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH---HHHHhCCccceeeechhc-ccceEEecc
Confidence            999999999999999999999999 888999999999999999998763   333446666888887765 566666666


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC----CCCCe-eeccCC
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG----GLDPI-LAYTAG  224 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~-~~~~~~  224 (253)
                      .|.+ +++|++...  ....+.+|.+.+-|++|-.+.  .+++||.+|.|.+|++...+.....    ...+. ....+.
T Consensus       306 rDrT-~rlwKi~ee--sqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~  380 (479)
T KOG0299|consen  306 RDRT-VRLWKIPEE--SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN  380 (479)
T ss_pred             ccce-eEEEecccc--ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeeccccccCCccccccc
Confidence            8887 999999543  356678888999999999875  7999999999999999886643310    00011 112233


Q ss_pred             CceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          225 AEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..|++++..|....+++++.+|.|++|.+
T Consensus       381 ~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  381 FWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             cceeeeEecccCceEEecCCCCceEEEEe
Confidence            58999999999887778889999999974

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=7.2e-27  Score=178.77  Aligned_cols=226  Identities=16%  Similarity=0.219  Sum_probs=189.3

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +|++.|++|+.  +|.|||+...  ..+....+..-.     -...+++.+ ++.+..+++..||.|.|||+.....+..
T Consensus       475 pdgrtLivGGeastlsiWDLAap--Tprikaeltssa-----paCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~Vrq  546 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAP--TPRIKAELTSSA-----PACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQ  546 (705)
T ss_pred             CCCceEEeccccceeeeeeccCC--CcchhhhcCCcc-----hhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeec
Confidence            46777777776  9999999874  223333333332     356788899 8999999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +++|++.+.||..+ +|..|-+|+-|.+||.||++++..+...    ...+.|.++..+| ++.++++|-.++. +.+..
T Consensus       547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh----dF~SQIfSLg~cP-~~dWlavGMens~-vevlh  620 (705)
T KOG0639|consen  547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH----DFSSQIFSLGYCP-TGDWLAVGMENSN-VEVLH  620 (705)
T ss_pred             ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh----hhhhhheecccCC-CccceeeecccCc-EEEEe
Confidence            99999999999999 9999999999999999999998743322    3345899999999 9999999998888 88887


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      .....  ...+..|+..|.++.|.+.| +++++.+.|+.+..|....+...        ......+.|.++..+.+++++
T Consensus       621 ~skp~--kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasi--------FqskE~SsVlsCDIS~ddkyI  689 (705)
T KOG0639|consen  621 TSKPE--KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI--------FQSKESSSVLSCDISFDDKYI  689 (705)
T ss_pred             cCCcc--ceeecccccEEEEEEecccC-ceeeecCchhhhhhccCccccce--------eeccccCcceeeeeccCceEE
Confidence            77644  56777899999999999999 79999999999999998877643        334467899999999999999


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.|....||++
T Consensus       690 VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  690 VTGSGDKKATVYEV  703 (705)
T ss_pred             EecCCCcceEEEEE
Confidence            99999999988875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=176.43  Aligned_cols=212  Identities=15%  Similarity=0.215  Sum_probs=167.3

Q ss_pred             eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----eeeeee-cccccEEEEEec-CCCeEEEEe
Q 035558           30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----VDTQLI-AHDKEVYDIAWG-GVGVFASVS  103 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~-~~~~~v~~~~~~-~~~~l~~~~  103 (253)
                      ...+++|.     ..|.++++. +.|..|++|+.|-+|++||++...    ..+.+. .....|.+++|+ .++.|++.+
T Consensus       160 Ei~l~hgt-----k~Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  160 EIQLKHGT-----KIVSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             eEeccCCc-----eEEEEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence            34566777     789999999 889999999999999999998543    122222 345689999999 888888888


Q ss_pred             CCCcEEEEEcCCCCCeee---------eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---
Q 035558          104 ADGSVRVFDLRDKEHSTI---------IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ---  171 (253)
Q Consensus       104 ~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---  171 (253)
                      .....+++|-........         +....+|...+++.+|+|.+...+++++.|+. +++||+.+.+..+..++   
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt-lRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT-LRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc-EEEEecCCchhheeEEeecc
Confidence            888999999775543222         23345677789999999988999999999999 99999988664444443   


Q ss_pred             --ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC--ceeEEEEcCCCCceEEEEcCCc
Q 035558          172 --RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA--EIEQLQWSSSQPDWVAIAFSTK  247 (253)
Q Consensus       172 --~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~  247 (253)
                        +..-++++++|+|++ .++|+|+.||.|.+|+..+.....    .......|..  .|++|+||++|++|++=+.|+.
T Consensus       313 ~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p----~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t  387 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRP----VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT  387 (641)
T ss_pred             CCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccccc----ceEeeeccCCCCceeEEEeccccchhhhccCCCc
Confidence              234478999999999 589999999999999986654221    1233445755  8999999999999999999999


Q ss_pred             EEEEEC
Q 035558          248 LQILRV  253 (253)
Q Consensus       248 i~vw~l  253 (253)
                      +++|+|
T Consensus       388 LKvWDL  393 (641)
T KOG0772|consen  388 LKVWDL  393 (641)
T ss_pred             eeeeec
Confidence            999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8e-26  Score=162.74  Aligned_cols=197  Identities=15%  Similarity=0.223  Sum_probs=153.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-ee-eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AV-DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                      +.|.+|+|+|....++++++.||+||+|+++.. .. -+....|.++|.+++|+ ++..+++|+.|+.+++||+.+++..
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~  107 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS  107 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee
Confidence            789999999767788889999999999999873 32 23445799999999999 9999999999999999999999633


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCC--EEEEEEeCCCeEEEEECCCCCCCeeeec--------------------------
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPR--YMATIIMDSAKVVVLDIRFPTLPVVELQ--------------------------  171 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------------------------  171 (253)
                      .    ...|..+|..+.|-+ ...  .|++|+.|.+ |++||+|.... +.++.                          
T Consensus       108 ~----v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKT-lKfWD~R~~~p-v~t~~LPeRvYa~Dv~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  108 Q----VAAHDAPVKTCHWVP-GMNYQCLVTGSWDKT-LKFWDTRSSNP-VATLQLPERVYAADVLYPMAVVATAERHIAV  180 (347)
T ss_pred             e----eeecccceeEEEEec-CCCcceeEecccccc-eeecccCCCCe-eeeeeccceeeehhccCceeEEEecCCcEEE
Confidence            2    246777999999987 444  8999999999 99999997542 22211                          


Q ss_pred             -----------ccc----cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC---------Cce
Q 035558          172 -----------RHQ----ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG---------AEI  227 (253)
Q Consensus       172 -----------~~~----~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~v  227 (253)
                                 .+.    -.+.+++..++.+ ..+.|+-.|.+.|..+..+....     ...+.-|.         ..|
T Consensus       181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~~-----nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  181 YNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPKD-----NFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             EEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCccC-----ceeEEEeccCCCCCCceEEe
Confidence                       111    2467888888874 66889999999998887753211     11333332         368


Q ss_pred             eEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          228 EQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++|+|+|....|+++|+||...+||
T Consensus       255 Nsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  255 NSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             cceEeecccceEEEecCCceEEEec
Confidence            8999999988899999999999997

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.3e-27  Score=163.00  Aligned_cols=208  Identities=19%  Similarity=0.304  Sum_probs=170.4

Q ss_pred             eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc---eeeeeeecccccEEEEEec---CCCeEEEEeCC
Q 035558           32 LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE---AVDTQLIAHDKEVYDIAWG---GVGVFASVSAD  105 (253)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d  105 (253)
                      .-..|+     +.|..+... --+.+|++++.|++|+|+..+..   +++.++.+|.+||+.++|.   -|.+||+++.|
T Consensus         6 idt~H~-----D~IHda~lD-yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD   79 (299)
T KOG1332|consen    6 IDTQHE-----DMIHDAQLD-YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD   79 (299)
T ss_pred             hhhhhh-----hhhhHhhhh-hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence            344676     667676666 67999999999999999998764   4677899999999999998   78999999999


Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCC--CCeeeecccccceeEEEE
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPT--LPVVELQRHQASVNAIAW  182 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~  182 (253)
                      |.|.||.-.++ ..........|...|++++|.|.+ +-.|++++.||. |.+.+.+...  ...+....|.-.|++++|
T Consensus        80 gkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~-vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   80 GKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK-VSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             ceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCc-EEEEEEcCCCCccchhhhhccccccceeee
Confidence            99999998877 444556667888899999999854 457888889998 9999888752  224556789999999999


Q ss_pred             ecC---C----------CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC----CceEEEEcC
Q 035558          183 APH---S----------SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ----PDWVAIAFS  245 (253)
Q Consensus       183 ~~~---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~  245 (253)
                      .|-   |          .+.|++|+.|..|+||+..+..-..     ...+.+|...|+.++|.|.-    ..+++++.|
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~-----e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL-----ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh-----hhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence            995   2          1469999999999999998874322     23578999999999999975    357789999


Q ss_pred             CcEEEEE
Q 035558          246 TKLQILR  252 (253)
Q Consensus       246 ~~i~vw~  252 (253)
                      +.+.||.
T Consensus       233 g~viIwt  239 (299)
T KOG1332|consen  233 GTVIIWT  239 (299)
T ss_pred             CcEEEEE
Confidence            9999995

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=4.1e-26  Score=180.26  Aligned_cols=220  Identities=16%  Similarity=0.202  Sum_probs=182.3

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +..+++++ | ++++|+-...  .+-....+.+|.     +-|.. +++-+.+.-.+++|+.|..|.+|.+.+..+...+
T Consensus        25 ~~~i~s~sRd~t~~vw~~~~~--~~l~~~~~~~~~-----g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L   97 (745)
T KOG0301|consen   25 GVCIISGSRDGTVKVWAKKGK--QYLETHAFEGPK-----GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL   97 (745)
T ss_pred             CeEEeecCCCCceeeeeccCc--ccccceecccCc-----ceeeccceeccccCcceEeecccceEEEEecCCCCchhhh
Confidence            34567777 5 9999998763  233334567776     55655 7887545567999999999999999999999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      ++|+..|.++... ++. +++||.|.++++|.+..-.     ....+|...|+.++.-| ++ .+++|+.|.. |++|.-
T Consensus        98 kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-----~~l~gH~asVWAv~~l~-e~-~~vTgsaDKt-IklWk~  168 (745)
T KOG0301|consen   98 KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-----YSLQGHTASVWAVASLP-EN-TYVTGSADKT-IKLWKG  168 (745)
T ss_pred             hccccceeeeecCCcCc-eEecccccceEEecchhhh-----cccCCcchheeeeeecC-CC-cEEeccCcce-eeeccC
Confidence            9999999999977 555 9999999999999776543     23568888999999988 44 8999999998 999987


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      .   ..++++.+|...|.++++-|++  .|++++.||.|+.|++ ++...       ....+|.+.+++++..++++.++
T Consensus       169 ~---~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge~l-------~~~~ghtn~vYsis~~~~~~~Iv  235 (745)
T KOG0301|consen  169 G---TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGEVL-------LEMHGHTNFVYSISMALSDGLIV  235 (745)
T ss_pred             C---chhhhhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCcee-------eeeeccceEEEEEEecCCCCeEE
Confidence            3   3588999999999999999986  5999999999999999 44443       47889999999999777777899


Q ss_pred             EEEcCCcEEEEEC
Q 035558          241 AIAFSTKLQILRV  253 (253)
Q Consensus       241 ~~~~~~~i~vw~l  253 (253)
                      +++.|++++||+.
T Consensus       236 s~gEDrtlriW~~  248 (745)
T KOG0301|consen  236 STGEDRTLRIWKK  248 (745)
T ss_pred             EecCCceEEEeec
Confidence            9999999999973

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.95  E-value=2.6e-25  Score=159.40  Aligned_cols=241  Identities=20%  Similarity=0.317  Sum_probs=182.4

Q ss_pred             CCCCCceEEeecC---------cEEEEEccCCccc-----cceeeeec-CCCCccccCCeeEEEecCCCCCEEEEEeCCC
Q 035558            1 ECQKPDLLATSSD---------FLRVWRISDEDRR-----VELKSLLN-GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT   65 (253)
Q Consensus         1 sp~~~~~l~~~~~---------~v~iw~~~~~~~~-----~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   65 (253)
                      +|.+.++|+++..         .+-||.+...-..     ++++..+. .+-     +.|.|+.|. |++..+++-. |.
T Consensus        72 ~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav-----g~i~cvew~-Pns~klasm~-dn  144 (370)
T KOG1007|consen   72 SPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV-----GKINCVEWE-PNSDKLASMD-DN  144 (370)
T ss_pred             CCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh-----CceeeEEEc-CCCCeeEEec-cC
Confidence            5888899988641         5789998775222     33333443 233     689999999 6888888765 78


Q ss_pred             eEEEEeccCcee-eeeee-----cccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEE
Q 035558           66 TCTIWDIEREAV-DTQLI-----AHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLG  136 (253)
Q Consensus        66 ~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~  136 (253)
                      .|.+|+++.+.. ...+.     ++....++-+|+   +++.+++. .|+++..||+|+.++...+.  ..|...+..+.
T Consensus       145 ~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlD  221 (370)
T KOG1007|consen  145 NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE--DAHGQRVRDLD  221 (370)
T ss_pred             ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh--hhhcceeeecc
Confidence            999999987754 33332     345677788898   77777775 48899999999887544443  34555899999


Q ss_pred             eeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-----
Q 035558          137 WNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV-----  211 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----  211 (253)
                      |+|+...+|++|+.|+. |++||.|+.+.|++++.+|...|+++.|+|..++++++|+.|..|.+|-..+-....     
T Consensus       222 fNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~  300 (370)
T KOG1007|consen  222 FNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFE  300 (370)
T ss_pred             CCCCceEEEEEcCCCcc-EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccc
Confidence            99976777888888888 999999999999999999999999999999888899999999999999765433100     


Q ss_pred             -----------CCCC------CCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEE
Q 035558          212 -----------EGGL------DPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILR  252 (253)
Q Consensus       212 -----------~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~  252 (253)
                                 .+..      .......|...|++++|+...+.++ +.+.||++.|=+
T Consensus       301 ~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  301 DDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             cccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence                       0000      0124557899999999999988766 578899887643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=2e-26  Score=162.01  Aligned_cols=189  Identities=15%  Similarity=0.229  Sum_probs=157.3

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++.++|++|+.  -+||||++..   -.+...+.+|.     +.|..+-|+ ...+.|++.+.|++||+||.++++.+++
T Consensus       110 ~ds~~lltgg~ekllrvfdln~p---~App~E~~ght-----g~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~s  180 (334)
T KOG0278|consen  110 QDSNYLLTGGQEKLLRVFDLNRP---KAPPKEISGHT-----GGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQS  180 (334)
T ss_pred             ccchhhhccchHHHhhhhhccCC---CCCchhhcCCC-----CcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEE
Confidence            46677888885  8999999875   24556788999     899999999 7788888889999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +. .+.+|+++..+ +++++.+ ...+.|.+||..+-..++..    .-...|.+..++| +...+++|+.|.. ++.||
T Consensus       181 L~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~----k~P~nV~SASL~P-~k~~fVaGged~~-~~kfD  252 (334)
T KOG0278|consen  181 LE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSY----KMPCNVESASLHP-KKEFFVAGGEDFK-VYKFD  252 (334)
T ss_pred             Ee-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeec----cCccccccccccC-CCceEEecCcceE-EEEEe
Confidence            87 57899999999 7776655 45678999999987743332    2233788999999 7788899998888 99999


Q ss_pred             CCCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          160 IRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      ..++.+ +..+ ++|.++|.|+.|+|+|. ..++||+||+|++|.+...+..
T Consensus       253 y~TgeE-i~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  253 YNTGEE-IGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ccCCce-eeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence            999876 5554 88999999999999994 9999999999999998876643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.2e-25  Score=177.71  Aligned_cols=212  Identities=18%  Similarity=0.222  Sum_probs=175.6

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      -.+++|+ | .+.+|.+...    .+..++++|+     ..|.+++.. .++. +++|+.|.++++|..  +++...+++
T Consensus        72 ~~l~~g~~D~~i~v~~~~~~----~P~~~LkgH~-----snVC~ls~~-~~~~-~iSgSWD~TakvW~~--~~l~~~l~g  138 (745)
T KOG0301|consen   72 GRLVVGGMDTTIIVFKLSQA----EPLYTLKGHK-----SNVCSLSIG-EDGT-LISGSWDSTAKVWRI--GELVYSLQG  138 (745)
T ss_pred             cceEeecccceEEEEecCCC----Cchhhhhccc-----cceeeeecC-CcCc-eEecccccceEEecc--hhhhcccCC
Confidence            3455555 6 9999999987    8999999999     899999976 5565 899999999999987  456667999


Q ss_pred             ccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558           84 HDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP  163 (253)
Q Consensus        84 ~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  163 (253)
                      |+..|+++.....+.++||+.|.+|++|.-.  +   .+....+|...|+.+++-+  +..|++++.||. |++|++. +
T Consensus       139 H~asVWAv~~l~e~~~vTgsaDKtIklWk~~--~---~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~-Ir~w~~~-g  209 (745)
T KOG0301|consen  139 HTASVWAVASLPENTYVTGSADKTIKLWKGG--T---LLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGS-IRLWDLD-G  209 (745)
T ss_pred             cchheeeeeecCCCcEEeccCcceeeeccCC--c---hhhhhccchhheeeeEEec--CCCeEeecCCce-EEEEecc-C
Confidence            9999999998844499999999999999653  2   3444567888999999985  567899999998 9999994 3


Q ss_pred             CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEEcCCCCceEEE
Q 035558          164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~  242 (253)
                      . .+.++.+|+..++++...+++ ..++++++|++++||+.....          ....| ...|+++.+-++|. ++++
T Consensus       210 e-~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e~~----------q~I~lPttsiWsa~~L~NgD-Ivvg  276 (745)
T KOG0301|consen  210 E-VLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDECV----------QVITLPTTSIWSAKVLLNGD-IVVG  276 (745)
T ss_pred             c-eeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecCceE----------EEEecCccceEEEEEeeCCC-EEEe
Confidence            3 589999999999999966666 599999999999999987322          33334 34899999988885 9999


Q ss_pred             EcCCcEEEEE
Q 035558          243 AFSTKLQILR  252 (253)
Q Consensus       243 ~~~~~i~vw~  252 (253)
                      ++||.||||.
T Consensus       277 ~SDG~VrVfT  286 (745)
T KOG0301|consen  277 GSDGRVRVFT  286 (745)
T ss_pred             ccCceEEEEE
Confidence            9999999995

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=6.1e-26  Score=180.40  Aligned_cols=230  Identities=13%  Similarity=0.236  Sum_probs=193.0

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC--CCEEEEEeCCCeEEEEeccCc-ee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE--PRRIGTSSIDTTCTIWDIERE-AV   77 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~-~~   77 (253)
                      +++..||+|..  .++||++.+.    +....+++|+     ..|.|+.|+.|.  .++||+++.|..|.|+|+... .+
T Consensus       469 p~gqhLAsGDr~GnlrVy~Lq~l----~~~~~~eAHe-----sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l  539 (1080)
T KOG1408|consen  469 PDGQHLASGDRGGNLRVYDLQEL----EYTCFMEAHE-----SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL  539 (1080)
T ss_pred             CCcceecccCccCceEEEEehhh----hhhhheeccc-----ceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence            67889999986  9999999886    8888899999     999999998543  578999999999999999755 47


Q ss_pred             eeeeecccccEEEEEec-CC--CeEEEEeCCCcEEEEEcCCCCCeeeee---ccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           78 DTQLIAHDKEVYDIAWG-GV--GVFASVSADGSVRVFDLRDKEHSTIIY---ESSEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      ++++.+|...|+++.|. .+  ..+++++.|..|.+ +...+.....++   ........++.|+..| +..++++++.|
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQD  617 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQD  617 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecc
Confidence            78899999999999999 54  68899999987654 443321111121   1122344899999999 89999999999


Q ss_pred             CCeEEEEECCCCCCCeeeecc---cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          152 SAKVVVLDIRFPTLPVVELQR---HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       152 ~~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      .+ |+|||+.++++ .+.|++   |++..-.+...|.| .|+++...|.++.++|.-+++...       ..++|...|+
T Consensus       618 rn-irif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcvA-------~m~GHsE~VT  687 (1080)
T KOG1408|consen  618 RN-IRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECVA-------QMTGHSEAVT  687 (1080)
T ss_pred             cc-eEEEeccccce-eeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhhh-------hhcCcchhee
Confidence            99 99999999875 666654   66778889999999 799999999999999999998765       8899999999


Q ss_pred             EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          229 QLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .+.|.+|-+.+++++.|+.|.||+|
T Consensus       688 G~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  688 GVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             eeeecccchhheeecCCceEEEEEC
Confidence            9999999999999999999999986

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3e-26  Score=166.50  Aligned_cols=211  Identities=16%  Similarity=0.223  Sum_probs=181.7

Q ss_pred             ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC
Q 035558           26 RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA  104 (253)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~  104 (253)
                      ..++.+.+.+|+     +.|..++.. .....+.+++.|.+.+||.+++++++..+.+|.+.|+++.|+ .+.++++++.
T Consensus       137 ~~~lvre~~GHk-----DGiW~Vaa~-~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG  210 (481)
T KOG0300|consen  137 KFRLVRELEGHK-----DGIWHVAAD-STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG  210 (481)
T ss_pred             eEeehhhhcccc-----cceeeehhh-cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC
Confidence            457788899999     899999987 667789999999999999999999999999999999999999 9999999999


Q ss_pred             CCcEEEEEc------CCCC-------------------------------CeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558          105 DGSVRVFDL------RDKE-------------------------------HSTIIYESSEPDTPLVRLGWNKQDPRYMAT  147 (253)
Q Consensus       105 dg~i~i~d~------~~~~-------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  147 (253)
                      |++-+||..      .++.                               ...++....+|.+.|.+..|-. .++.+++
T Consensus       211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vT  289 (481)
T KOG0300|consen  211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVT  289 (481)
T ss_pred             CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeee
Confidence            999999962      1100                               0012233456777888888888 8999999


Q ss_pred             EEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          148 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       148 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      ++.|.. ..+||++++. ++..+.+|....+.++-+|.. +++++.+.|.+.++||++..-...      ..+.+|...|
T Consensus       290 aSWDRT-AnlwDVEtge-~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV------~VFQGHtdtV  360 (481)
T KOG0300|consen  290 ASWDRT-ANLWDVETGE-VVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSV------AVFQGHTDTV  360 (481)
T ss_pred             eecccc-ceeeeeccCc-eeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhccee------eeecccccce
Confidence            999998 9999999976 589999999999999999998 799999999999999999544332      5788999999


Q ss_pred             eEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          228 EQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +++.|..+.+ +++++.|..++||+|
T Consensus       361 TS~vF~~dd~-vVSgSDDrTvKvWdL  385 (481)
T KOG0300|consen  361 TSVVFNTDDR-VVSGSDDRTVKVWDL  385 (481)
T ss_pred             eEEEEecCCc-eeecCCCceEEEeee
Confidence            9999998875 999999999999986

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=176.87  Aligned_cols=228  Identities=15%  Similarity=0.222  Sum_probs=184.2

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--ee-
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VD-   78 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~-   78 (253)
                      +++.|++++ | +|++|+.... . --+..+++.|.     +.|.|++.-.++..++|+|+.|+.|.+||++++.  .+ 
T Consensus        84 ~~~tlIS~SsDtTVK~W~~~~~-~-~~c~stir~H~-----DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~  156 (735)
T KOG0308|consen   84 NGKTLISASSDTTVKVWNAHKD-N-TFCMSTIRTHK-----DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA  156 (735)
T ss_pred             CCCceEEecCCceEEEeecccC-c-chhHhhhhccc-----chheeeeecccCceeEEecCCCccEEEEEccCcchhhhh
Confidence            454555555 7 9999999874 1 35678899999     8999999933788999999999999999999772  22 


Q ss_pred             -------eeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           79 -------TQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        79 -------~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                             ..+. ++..+|++++.+ .+..+++|+..+.+++||.++.+....   ..+|...|..+..++ +|+.+++++
T Consensus       157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---LrGHTdNVr~ll~~d-DGt~~ls~s  232 (735)
T KOG0308|consen  157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---LRGHTDNVRVLLVND-DGTRLLSAS  232 (735)
T ss_pred             hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---eeccccceEEEEEcC-CCCeEeecC
Confidence                   2233 788999999999 888999999999999999999884333   348888999999999 999999999


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ  229 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  229 (253)
                      .|+. |++||+.... ++.++..|...|+++..+|+- ..+++|+.||.|..=|+++.....       ..+....+|..
T Consensus       233 SDgt-IrlWdLgqQr-Cl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~t-------lick~daPv~~  302 (735)
T KOG0308|consen  233 SDGT-IRLWDLGQQR-CLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKST-------LICKEDAPVLK  302 (735)
T ss_pred             CCce-EEeeeccccc-eeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhhe-------EeecCCCchhh
Confidence            9999 9999999755 689999999999999999998 699999999999999999864332       45555666777


Q ss_pred             EEEcCCCCceEEEEcCCcEEEEE
Q 035558          230 LQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +..+.....+=++..|+.|+-|.
T Consensus       303 l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  303 LHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             hhhccccCCceeeeccccceecC
Confidence            76664444444556666666664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=3.3e-25  Score=173.76  Aligned_cols=232  Identities=21%  Similarity=0.328  Sum_probs=170.8

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeee--ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSL--LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---   76 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---   76 (253)
                      ....|++++ | ++++||+...    ++...  +.+|.     ..|.+++|.|.+...|++|+.||.|.|||++-..   
T Consensus       111 ge~~lVsasGDsT~r~Wdvk~s----~l~G~~~~~GH~-----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~  181 (720)
T KOG0321|consen  111 GESLLVSASGDSTIRPWDVKTS----RLVGGRLNLGHT-----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA  181 (720)
T ss_pred             CceeEEEccCCceeeeeeeccc----eeecceeecccc-----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence            334555554 6 9999999986    66655  88999     9999999998899999999999999999986421   


Q ss_pred             ------------------------eeeeeecccccEEE----EEecCCCeEEEEeC-CCcEEEEEcCCCCCeee-----e
Q 035558           77 ------------------------VDTQLIAHDKEVYD----IAWGGVGVFASVSA-DGSVRVFDLRDKEHSTI-----I  122 (253)
Q Consensus        77 ------------------------~~~~~~~~~~~v~~----~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~-----~  122 (253)
                                              .+...+.+...|.+    +.|-|...||+++. |+.|++||++.......     .
T Consensus       182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~  261 (720)
T KOG0321|consen  182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS  261 (720)
T ss_pred             HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence                                    01111233344444    44448999999988 99999999998753211     1


Q ss_pred             eccCCC---CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccc--eeEEEEecCCCCeEEEecCC
Q 035558          123 YESSEP---DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQAS--VNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       123 ~~~~~~---~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~d  196 (253)
                      .....+   .-.+.++.... .|.++.+.+.|+. |++|+++... .|+..+.++...  -..-..+|++ .+|++|+.|
T Consensus       262 ~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd  338 (720)
T KOG0321|consen  262 DKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSD  338 (720)
T ss_pred             cCccCcccceeeeEEEEecC-CCCeEEEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCC
Confidence            111112   22567777776 6777777777998 9999998755 345555544321  2223568998 699999999


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV  253 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l  253 (253)
                      ...++|.+.+.+.+.      ..+.+|...|+.++|.|..- -+++++.|..+++|++
T Consensus       339 ~~ayiw~vs~~e~~~------~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  339 EQAYIWVVSSPEAPP------ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             cceeeeeecCccCCh------hhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            999999999988654      68889999999999987532 3778899999999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=3.5e-25  Score=159.25  Aligned_cols=204  Identities=19%  Similarity=0.294  Sum_probs=160.3

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCcc--c----cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDR--R----VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI   72 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~--~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~   72 (253)
                      +|..++++++|+ | .+.+||++...+  .    .+....+....+..|...|.++.|-|.+...+.+++.|.+++|||.
T Consensus        52 d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt  131 (397)
T KOG4283|consen   52 DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT  131 (397)
T ss_pred             ccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeec
Confidence            366788888887 5 999999976421  0    1111212222223344899999999888899999999999999999


Q ss_pred             cCceeeeeeecccccEEEEEec----CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           73 EREAVDTQLIAHDKEVYDIAWG----GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        73 ~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      .+.+....++ -++.|++-+++    ...++|+|..|-.|++.|+.++.....   ..+|...|.++.|+|...-.|++|
T Consensus       132 nTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~---LsGHr~~vlaV~Wsp~~e~vLatg  207 (397)
T KOG4283|consen  132 NTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT---LSGHRDGVLAVEWSPSSEWVLATG  207 (397)
T ss_pred             ccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee---eccccCceEEEEeccCceeEEEec
Confidence            9988777776 56788888887    355788888999999999999985444   457888999999999777889999


Q ss_pred             EeCCCeEEEEECCCCCCCeee--------------ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          149 IMDSAKVVVLDIRFPTLPVVE--------------LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      +.|+. |++||+|....+...              -..|.+.+++++|..++ .++++++.|..+++|+..++...
T Consensus       208 saDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  208 SADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             CCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCccc
Confidence            99999 999999865322222              33577889999999999 69999999999999999988744

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=3.1e-25  Score=167.70  Aligned_cols=235  Identities=17%  Similarity=0.254  Sum_probs=178.3

Q ss_pred             CCCC-ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-
Q 035558            2 CQKP-DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV-   77 (253)
Q Consensus         2 p~~~-~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-   77 (253)
                      |... .++|+|..  .|-+||+........-+..+..|.     .+|.++.|+|.+...+++.+.||+|++-|++.+.. 
T Consensus       196 Pt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-----~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e  270 (498)
T KOG4328|consen  196 PTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-----GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE  270 (498)
T ss_pred             ccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-----ccccceEecCCChhheeeeccCceeeeeeecchhhH
Confidence            4444 67777775  999999965434445667778888     89999999998999999999999999999987653 


Q ss_pred             -eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           78 -DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        78 -~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                       +..+......+.++.|+ +...++.+..=|.+.+||+++++..  ......|+..|++++++|....+||+++.|+. +
T Consensus       271 ~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~--~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~  347 (498)
T KOG4328|consen  271 EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE--YENLRLHKKKITSVALNPVCPWFLATASLDQT-A  347 (498)
T ss_pred             HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc--chhhhhhhcccceeecCCCCchheeecccCcc-e
Confidence             33333345567788888 7777778877779999999998732  33333455599999999999999999999999 9


Q ss_pred             EEEECCCCCC---CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEecc---CCCCCCCCCCCCeeeccCCC----
Q 035558          156 VVLDIRFPTL---PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS---SMGQPVEGGLDPILAYTAGA----  225 (253)
Q Consensus       156 ~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~----  225 (253)
                      +|||+|....   |......|...|.+..|+|.+. .|+|.+.|..|+|||..   ....+.       ....|..    
T Consensus       348 kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~dss~~sa~~~p~-------~~I~Hn~~t~R  419 (498)
T KOG4328|consen  348 KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFDSSCISAKDEPL-------GTIPHNNRTGR  419 (498)
T ss_pred             eeeehhhhcCCCCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEeecccccccCCcc-------ceeeccCcccc
Confidence            9999997542   3445567999999999999996 59999999999999995   222222       3333321    


Q ss_pred             --ceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          226 --EIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       226 --~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                        .....+|.|+..+++.+..-..|-|++
T Consensus       420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             cccchhheeCCCccEEEEeccCcceeEEc
Confidence              223557999988666776666666654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=4.1e-27  Score=186.73  Aligned_cols=210  Identities=16%  Similarity=0.304  Sum_probs=182.1

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW   93 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~   93 (253)
                      .+++|+...          +..|.     ..+.++..- ...+.+++|+.|-.+-+|.+.....+..+.+|..+|.++.|
T Consensus        15 ~Lr~~~~~~----------~~~hs-----aav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f   78 (825)
T KOG0267|consen   15 KLRVWDTRE----------FVAHS-----AAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF   78 (825)
T ss_pred             ccccccchh----------hhhhh-----hhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence            677777655          23455     667777664 77899999999999999999877777789999999999999


Q ss_pred             c-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558           94 G-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR  172 (253)
Q Consensus        94 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  172 (253)
                      + ...+|++|+.+|+|++||++..+.   +....+|...+.++.|+| -+.++|.++.|.. +++||.+... +.+.+.+
T Consensus        79 ~~~E~LlaagsasgtiK~wDleeAk~---vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd-~~iwD~Rk~G-c~~~~~s  152 (825)
T KOG0267|consen   79 DTSERLLAAGSASGTIKVWDLEEAKI---VRTLTGHLLNITSVDFHP-YGEFFASGSTDTD-LKIWDIRKKG-CSHTYKS  152 (825)
T ss_pred             CcchhhhcccccCCceeeeehhhhhh---hhhhhccccCcceeeecc-ceEEecccccccc-ceehhhhccC-ceeeecC
Confidence            9 999999999999999999998874   345567777999999999 8999999999999 9999999755 5889999


Q ss_pred             cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |...+..+.|+|+| ++++.+++|..++|||+..++...       .+..|..++..+.|+|..-.+..++.|..+++|+
T Consensus       153 ~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~~-------ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  153 HTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLSK-------EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD  224 (825)
T ss_pred             CcceeEEEeecCCC-ceeeccCCcceeeeeccccccccc-------ccccccccccccccCchhhhhccCCCCceeeeec
Confidence            99999999999999 799999999999999999887543       6677999999999999986556899999999998


Q ss_pred             C
Q 035558          253 V  253 (253)
Q Consensus       253 l  253 (253)
                      |
T Consensus       225 l  225 (825)
T KOG0267|consen  225 L  225 (825)
T ss_pred             c
Confidence            6

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.6e-25  Score=166.73  Aligned_cols=199  Identities=21%  Similarity=0.385  Sum_probs=162.8

Q ss_pred             CeeEEEecC------CCCCEEEEEeCCCeEEEEeccCcee---------------------eeeeecccccEEEEEec--
Q 035558           44 PLTSFDWNE------AEPRRIGTSSIDTTCTIWDIEREAV---------------------DTQLIAHDKEVYDIAWG--   94 (253)
Q Consensus        44 ~v~~~~~~~------~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~v~~~~~~--   94 (253)
                      ...|+.|..      ..++++|.|+.|..|.|||+.-...                     -....+|+..|.+|+|+  
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            345777742      2368999999999999999863210                     00123688899999999  


Q ss_pred             CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccc
Q 035558           95 GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ  174 (253)
Q Consensus        95 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  174 (253)
                      -.+.|++||.|.+|++||+.++++...+.   .|.+.|.+++|+|..+.+|++|++|++ |.+.|.|.....-..++ -.
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~~~s~~~wk-~~  329 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDPSNSGKEWK-FD  329 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccce-EEeeeccCccccCceEE-ec
Confidence            77899999999999999999998655553   566799999999999999999999999 99999996443222222 35


Q ss_pred             cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      +.|-.++|.|..+..++++..||+++-+|+|+...+.      .....|..+|.+|++++..+.++ +++.++.+++|++
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v------wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV------WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCCCCce------eEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence            6789999999998889999999999999999988665      68889999999999999887766 6888999999985

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=2.2e-24  Score=157.10  Aligned_cols=238  Identities=13%  Similarity=0.229  Sum_probs=182.6

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC----CCEEEEEeCCCeEEEEeccCceee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE----PRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      ....+|+.+. .+.+|.....    .-++.++.....++......++|+ -+    ..++|+|+.-|.|+|.|+.+++..
T Consensus        54 e~~vfatvG~~rvtiy~c~~d----~~ir~lq~y~D~d~~Esfytcsw~-yd~~~~~p~la~~G~~GvIrVid~~~~~~~  128 (385)
T KOG1034|consen   54 EPQVFATVGGNRVTIYECPGD----GGIRLLQSYADEDHDESFYTCSWS-YDSNTGNPFLAAGGYLGVIRVIDVVSGQCS  128 (385)
T ss_pred             CCceEEEeCCcEEEEEEECCc----cceeeeeeccCCCCCcceEEEEEE-ecCCCCCeeEEeecceeEEEEEecchhhhc
Confidence            4567888877 9999998775    223333333333333678888886 32    457888889999999999999999


Q ss_pred             eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           79 TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ..+.+|...|+.+.++  ..+++++++.|..|++|++++..++.++....+|...|.++.|++ ++.+|++++.|.. ++
T Consensus       129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhs-lk  206 (385)
T KOG1034|consen  129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHS-LK  206 (385)
T ss_pred             cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcce-EE
Confidence            9999999999999999  788999999999999999999999988888899999999999999 8999999999999 99


Q ss_pred             EEECCCCCC--------------------------Cee-eeccc------------------------------------
Q 035558          157 VLDIRFPTL--------------------------PVV-ELQRH------------------------------------  173 (253)
Q Consensus       157 ~~d~~~~~~--------------------------~~~-~~~~~------------------------------------  173 (253)
                      +|++...+.                          |.. +-..|                                    
T Consensus       207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~  286 (385)
T KOG1034|consen  207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIH  286 (385)
T ss_pred             EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhh
Confidence            999973210                          000 00001                                    


Q ss_pred             ------------------ccceeEE--EEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          174 ------------------QASVNAI--AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       174 ------------------~~~i~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                                        ...|+-+  +|.|.+ +.|+.|...|.|.+||++....+.   ............|...+|+
T Consensus       287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~---~ttl~~s~~~~tVRQ~sfS  362 (385)
T KOG1034|consen  287 NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPK---CTTLTHSKSGSTVRQTSFS  362 (385)
T ss_pred             ccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCcc---CceEEeccccceeeeeeec
Confidence                              1122222  345555 589999999999999999876432   1112223346789999999


Q ss_pred             CCCCceEEEEcCCcEEEEE
Q 035558          234 SSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       234 ~~~~~~~~~~~~~~i~vw~  252 (253)
                      .++..+++++.|+.|--|+
T Consensus       363 ~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  363 RDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             ccCcEEEEEeCCCcEEEEE
Confidence            9999999999999888776

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=6.2e-25  Score=167.99  Aligned_cols=209  Identities=14%  Similarity=0.279  Sum_probs=176.9

Q ss_pred             ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .++++|+.  .|+|||+...    .+.+.+++|+     ..|+++.++ .+..+||+++..|.|.|..+.++.....+..
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~-----stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAK----LIHRFLKDHQ-----STVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             eeeeccCcCceeeehhhHHH----HHhhhccCCc-----ceeEEEEec-CCcceeEEeccCCcEEEEecccCccccceec
Confidence            46667663  9999999975    7788899999     899999999 8899999999999999999998887777763


Q ss_pred             c-cccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           84 H-DKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        84 ~-~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      . ...|.-+.|+  ...+|.+++.+|.|.+||+....+  .......|..+...++|+|.+..+|++.+.|.. |.+||.
T Consensus       162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~  238 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDI  238 (673)
T ss_pred             CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCccceEEEecccce-EEEeec
Confidence            3 3556789999  666888999999999999987763  233345677799999999999999999999999 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      +.... ...+. ...+...++|.++| .+|+.|...|.|..||++..+.|.      .....|...|++++|-|.-
T Consensus       239 ~s~~s-~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~Pv------~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  239 RSQAS-TDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKAPV------AVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ccccc-cceee-ecCCcceeeecCCc-eEEEeecCCceEEEEecccCCCCc------eEeeecccceeEEEeeecc
Confidence            96542 44443 46789999999999 699999999999999999998876      6788899999999998864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.5e-24  Score=173.06  Aligned_cols=227  Identities=17%  Similarity=0.275  Sum_probs=177.4

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +|++|.+++ + .|++|+.......++   ++..+.     ..|.+++..   .++|++|+.+++|.+|.+..++.-..+
T Consensus        24 ~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g-----~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~iL   92 (933)
T KOG1274|consen   24 DGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISG-----ELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDTIL   92 (933)
T ss_pred             CCCEEEEecCCCceEEeecCCcccCCc---hhhccC-----ceeEEEeec---ccceEEeeccceEEEeeCCCCCcccee
Confidence            455666655 6 999999866411122   222244     678888754   668999999999999999888766556


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      ...+-++++++|+ +|++++.|+.|-.|++.++......   ....+|+++|.++.|+| .+++||+.+.||. |++||+
T Consensus        93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~---~~lrgh~apVl~l~~~p-~~~fLAvss~dG~-v~iw~~  167 (933)
T KOG1274|consen   93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE---KVLRGHDAPVLQLSYDP-KGNFLAVSSCDGK-VQIWDL  167 (933)
T ss_pred             eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh---eeecccCCceeeeeEcC-CCCEEEEEecCce-EEEEEc
Confidence            5667899999999 9999999999999999999887643   33457778999999999 9999999999999 999999


Q ss_pred             CCCCCCeeeecc--------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          161 RFPTLPVVELQR--------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       161 ~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      .++.. .+.+.+        ....+..++|+|++. .|+..+.|+.|++|+........     ......+...+..++|
T Consensus       168 ~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f-----~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  168 QDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQF-----KLRDKLSSSKFSDLQW  240 (933)
T ss_pred             ccchh-hhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceehe-----eecccccccceEEEEE
Confidence            87652 222221        144678899999985 77777889999999999887654     1122234555999999


Q ss_pred             cCCCCceEEEEcCCcEEEEEC
Q 035558          233 SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|.|+|++|++.++.|.||++
T Consensus       241 sPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  241 SPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             cCCCcEEeeeccCCcEEEEec
Confidence            999999999999999999985

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.7e-24  Score=155.53  Aligned_cols=209  Identities=22%  Similarity=0.290  Sum_probs=152.9

Q ss_pred             eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------------------------------
Q 035558           30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---------------------------------   76 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------------------------   76 (253)
                      ...+++|.     ..|++++|+ .+|..|++++.|+.|++|+++..+                                 
T Consensus        79 ~~~LKgH~-----~~vt~~~Fs-SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~  152 (420)
T KOG2096|consen   79 VSVLKGHK-----KEVTDVAFS-SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK  152 (420)
T ss_pred             hhhhhccC-----CceeeeEEc-CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence            45688898     899999999 999999999999999999987521                                 


Q ss_pred             ---eeeee-----------------------ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC
Q 035558           77 ---VDTQL-----------------------IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD  129 (253)
Q Consensus        77 ---~~~~~-----------------------~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  129 (253)
                         .+..+                       +.|.-.+..+-.. ++.++++++.|..|.+|+++ ++....+.   ...
T Consensus       153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---tnq  228 (420)
T KOG2096|consen  153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---TNQ  228 (420)
T ss_pred             cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec---ccc
Confidence               00000                       0122334344444 66789999999999999999 54333332   223


Q ss_pred             CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          130 TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       130 ~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                      ..-+..+.+| +|+++++++..-- |++|..--.+       ..+.++.+|...|..++|+|+. ..+++.|.||+++||
T Consensus       229 ~~n~~aavSP-~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  229 SSNYDAAVSP-DGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIW  305 (420)
T ss_pred             ccccceeeCC-CCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEe
Confidence            3556788999 9999999999888 9999863221       2367789999999999999998 699999999999999


Q ss_pred             eccCCC----CCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          203 DLSSMG----QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       203 d~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |+.-..    .|......+..+...++....++.+|.++ .++.+....++++.
T Consensus       306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~s~gs~l~~~~  358 (420)
T KOG2096|consen  306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAVSFGSDLKVFA  358 (420)
T ss_pred             eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEeecCCceEEEE
Confidence            986432    22211122223333455556999999997 77888888888764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=5.4e-24  Score=171.56  Aligned_cols=218  Identities=14%  Similarity=0.186  Sum_probs=177.2

Q ss_pred             cEEEEEccCCccccce-eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee---ecccccEE
Q 035558           14 FLRVWRISDEDRRVEL-KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL---IAHDKEVY   89 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~   89 (253)
                      ..+.|++.+.    .. ...+....-......+++++.+ +.|++.+.|+..|.|-+|++++|-....+   +.|.++|+
T Consensus       423 ~~~tW~~~n~----~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~  497 (910)
T KOG1539|consen  423 SAYTWNFRNK----TSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT  497 (910)
T ss_pred             eEEEEeccCc----ccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence            8999999874    22 1222222111122578899999 88999999999999999999999888877   58999999


Q ss_pred             EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCee
Q 035558           90 DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV  168 (253)
Q Consensus        90 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  168 (253)
                      +++.. -++.+++++.+|.+++||+.+......+    .-...+..+..+. ....++.+..+-. |.++|..+.+. +.
T Consensus       498 gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l----~l~~~~~~iv~hr-~s~l~a~~~ddf~-I~vvD~~t~kv-vR  570 (910)
T KOG1539|consen  498 GLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL----RLGSSITGIVYHR-VSDLLAIALDDFS-IRVVDVVTRKV-VR  570 (910)
T ss_pred             EEEecCCCceEEEccCcceEEEEecCCcceeeee----ccCCCcceeeeee-hhhhhhhhcCcee-EEEEEchhhhh-hH
Confidence            99999 8889999999999999999987632222    2233677888887 7778888887777 99999998664 88


Q ss_pred             eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC-Cc
Q 035558          169 ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS-TK  247 (253)
Q Consensus       169 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~  247 (253)
                      .+.+|...|++++|+|+| ++|++++.|++|++||+.++...        ....-..+++++.|+|+|.+|+++..| +.
T Consensus       571 ~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lI--------D~~~vd~~~~sls~SPngD~LAT~Hvd~~g  641 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLI--------DGLLVDSPCTSLSFSPNGDFLATVHVDQNG  641 (910)
T ss_pred             HhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCccee--------eeEecCCcceeeEECCCCCEEEEEEecCce
Confidence            999999999999999999 79999999999999999998743        344457899999999999988888777 78


Q ss_pred             EEEEE
Q 035558          248 LQILR  252 (253)
Q Consensus       248 i~vw~  252 (253)
                      |.+|-
T Consensus       642 IylWs  646 (910)
T KOG1539|consen  642 IYLWS  646 (910)
T ss_pred             EEEEE
Confidence            88884

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=1.1e-24  Score=179.85  Aligned_cols=193  Identities=18%  Similarity=0.303  Sum_probs=159.4

Q ss_pred             CCeeEEEecCCCCCEEEEEe--CCCeEEEEeccC------------ceeeeeeecccccEEEEEec-CCCeEEEEeCCCc
Q 035558           43 GPLTSFDWNEAEPRRIGTSS--IDTTCTIWDIER------------EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGS  107 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~  107 (253)
                      ..|.++..+ |++..+++|+  .||.++||+.+.            .+.+..+..|.+.|.|+.|+ +|++||+|++|+.
T Consensus        14 ~~IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   14 KSIFSIDVH-PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             eeEEEEEec-CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            679999999 9999999999  899999998753            12445566899999999999 9999999999999


Q ss_pred             EEEEEcCCC---------------CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558          108 VRVFDLRDK---------------EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR  172 (253)
Q Consensus       108 i~i~d~~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  172 (253)
                      |.+|+....               +..+......+|...|..++|+| ++.++++++.|+. |.+|+.++. ..+..+.+
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~Dns-Viiwn~~tF-~~~~vl~~  169 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNS-VIIWNAKTF-ELLKVLRG  169 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccce-EEEEccccc-eeeeeeec
Confidence            999998730               11234445567888999999999 9999999999999 999999998 56999999


Q ss_pred             cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      |...|-.+.|.|-| +||++-+.|++|+||++....... ...+|.........+..+.|||||.+|++
T Consensus       170 H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k-~It~pf~~~~~~T~f~RlSWSPDG~~las  236 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEK-SITKPFEESPLTTFFLRLSWSPDGHHLAS  236 (942)
T ss_pred             ccccccceEECCcc-CeeeeecCCceEEEEEcccceeeE-eeccchhhCCCcceeeecccCCCcCeecc
Confidence            99999999999999 799999999999999977643211 00122233345677899999999997774

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.7e-24  Score=159.73  Aligned_cols=205  Identities=11%  Similarity=0.158  Sum_probs=171.5

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeeeeecccccEEEEEec-CCCeEEEEe
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWG-GVGVFASVS  103 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~  103 (253)
                      +..+++..|.     ..|.-+.|+ ++|++||+++.|.+..+|++....   ...++.+|..+|..+.|+ +.+++++|+
T Consensus       215 qt~qil~~ht-----dEVWfl~FS-~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg  288 (519)
T KOG0293|consen  215 QTWQILQDHT-----DEVWFLQFS-HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG  288 (519)
T ss_pred             hhhhhHhhCC-----CcEEEEEEc-CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence            4556777888     899999999 999999999999999999876543   577888999999999999 999999999


Q ss_pred             CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc-ccceeEEEE
Q 035558          104 ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH-QASVNAIAW  182 (253)
Q Consensus       104 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~  182 (253)
                      .|..+.+||..++.........  +...+.+++|.| ++..+++|+.|++ +..||+....  ....++- ...|.+++.
T Consensus       289 ~~e~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~p-Dg~~~V~Gs~dr~-i~~wdlDgn~--~~~W~gvr~~~v~dlai  362 (519)
T KOG0293|consen  289 FDEVLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCP-DGFRFVTGSPDRT-IIMWDLDGNI--LGNWEGVRDPKVHDLAI  362 (519)
T ss_pred             chHheeeccCCcchhhhhcccC--cCCCcceeEEcc-CCceeEecCCCCc-EEEecCCcch--hhcccccccceeEEEEE
Confidence            9999999999999854433222  445899999999 9999999999998 9999998643  3333332 246899999


Q ss_pred             ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .+|| +++++.+.|..|++|+.+.....        .......+|++++.|.++++++..=.+..+++|++
T Consensus       363 t~Dg-k~vl~v~~d~~i~l~~~e~~~dr--------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl  424 (519)
T KOG0293|consen  363 TYDG-KYVLLVTVDKKIRLYNREARVDR--------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL  424 (519)
T ss_pred             cCCC-cEEEEEecccceeeechhhhhhh--------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence            9999 68888889999999999875432        24456779999999999998888889999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=2.2e-24  Score=165.06  Aligned_cols=221  Identities=16%  Similarity=0.192  Sum_probs=174.8

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW   93 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~   93 (253)
                      .+++|.-+..-.....+....+..       -.|++.. ....++++|+..+.|+|||++...+.+.+++|+..|+++.+
T Consensus        58 ~~~~~~K~g~~~~Vp~~~k~~gd~-------~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~Y  129 (673)
T KOG4378|consen   58 VMRIKEKDGKTPEVPRVRKLTGDN-------AFCVACA-SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDY  129 (673)
T ss_pred             eEEEecccCCCCccceeeccccch-------HHHHhhh-hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEe
Confidence            889998765312223333333332       3355444 45588999999999999999977777888999999999999


Q ss_pred             c-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558           94 G-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR  172 (253)
Q Consensus        94 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  172 (253)
                      + ...+||+++..|-|.+..+.++.....+....  ...+.-+.|+|....+|.+++.+|. |.+||.............
T Consensus       130 N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s--gqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~~  206 (673)
T KOG4378|consen  130 NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS--GQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASEA  206 (673)
T ss_pred             cCCcceeEEeccCCcEEEEecccCccccceecCC--CCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhhh
Confidence            9 99999999999999999999887544443322  2367789999966667777777777 999999887655566778


Q ss_pred             cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |..+...++|+|..+.+|++.+.|..|.+||.+.....        .......|...++|+++|.+|+++...|.+..|+
T Consensus       207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--------~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--------DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             ccCCcCcceecCCccceEEEecccceEEEeeccccccc--------ceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence            99999999999998889999999999999999975532        2333466899999999999888999999999988


Q ss_pred             C
Q 035558          253 V  253 (253)
Q Consensus       253 l  253 (253)
                      |
T Consensus       279 ~  279 (673)
T KOG4378|consen  279 M  279 (673)
T ss_pred             c
Confidence            6

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.5e-24  Score=168.05  Aligned_cols=187  Identities=18%  Similarity=0.323  Sum_probs=158.9

Q ss_pred             CceEEeecC--cEEEEEccCCccccceee-eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            5 PDLLATSSD--FLRVWRISDEDRRVELKS-LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ...+.+|+.  .|..+|+...    +... .+++|.     ..|..+.|+ +++.++|+|+.|+.+.|||....++...+
T Consensus       270 ~~~lssGsr~~~I~~~dvR~~----~~~~~~~~~H~-----qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~~p~~~~  339 (484)
T KOG0305|consen  270 SSVLSSGSRDGKILNHDVRIS----QHVVSTLQGHR-----QEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSPEPKFTF  339 (484)
T ss_pred             CceEEEecCCCcEEEEEEecc----hhhhhhhhccc-----ceeeeeEEC-CCCCeeccCCCccceEeccCCCccccEEE
Confidence            456677774  9999999886    3222 488898     899999999 99999999999999999999888888899


Q ss_pred             ecccccEEEEEec--CCCeEEEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ..|...|.+++|+  ...+||+|+  .|+.|++||..++.....+    .....|++|.|++....++.+-++....|.|
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~l  415 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCSLIWSKKYKELLSTHGYSENQITL  415 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence            9999999999999  888999975  5999999999988744433    3344899999999555666666665556999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      |+..+.+. +..+.+|...|..++++|+| ..+++|+.|.++++|++-..
T Consensus       416 w~~ps~~~-~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  416 WKYPSMKL-VAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             Eeccccce-eeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCC
Confidence            99998664 88999999999999999999 59999999999999999774

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=1.8e-24  Score=170.16  Aligned_cols=114  Identities=17%  Similarity=0.258  Sum_probs=102.5

Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                      .|+.+.|+|.+...||+++.|+. |++|.+....      .|...+..|...|+++.|+|-....|++++.|.+|++||+
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             eeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            57889999999999999999998 9999987643      3567788999999999999977679999999999999999


Q ss_pred             cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          205 SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++.....       .+.+|.+.|.+++|+|+|+.+++++.|+.++|++
T Consensus       708 ~~~~~~~-------~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  708 ANAKLYS-------RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             hhhhhhh-------eeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            9987554       8889999999999999999999999999999986

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1e-22  Score=156.12  Aligned_cols=233  Identities=15%  Similarity=0.253  Sum_probs=171.7

Q ss_pred             CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      |.+.+++++++. .+.+|++..+ .-.+....++.++.    .-|.|++|. ++++ +++|..+|.|.||+..+.+..+.
T Consensus       210 Ptd~nliit~Gk~H~~Fw~~~~~-~l~k~~~~fek~ek----k~Vl~v~F~-engd-viTgDS~G~i~Iw~~~~~~~~k~  282 (626)
T KOG2106|consen  210 PTDPNLIITCGKGHLYFWTLRGG-SLVKRQGIFEKREK----KFVLCVTFL-ENGD-VITGDSGGNILIWSKGTNRISKQ  282 (626)
T ss_pred             cCCCcEEEEeCCceEEEEEccCC-ceEEEeeccccccc----eEEEEEEEc-CCCC-EEeecCCceEEEEeCCCceEEeE
Confidence            789999999998 9999999886 44455566766664    679999998 6666 67999999999999988887777


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC-----------Ceeeeec------------------------
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE-----------HSTIIYE------------------------  124 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~------------------------  124 (253)
                      ...|.+.|.+++.. +|.+| +|+.|..|..||-.-.+           .++.+.+                        
T Consensus       283 ~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~  361 (626)
T KOG2106|consen  283 VHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT  361 (626)
T ss_pred             eeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence            77999999999999 66554 59999999999832211           0011110                        


Q ss_pred             --cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE--------------------------------------CCCCC
Q 035558          125 --SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD--------------------------------------IRFPT  164 (253)
Q Consensus       125 --~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d--------------------------------------~~~~~  164 (253)
                        ..+|......++.+| +.+++++++.|+. +++|+                                      .++..
T Consensus       362 ~~v~gh~delwgla~hp-s~~q~~T~gqdk~-v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  362 LTVQGHGDELWGLATHP-SKNQLLTCGQDKH-VRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EEEEecccceeeEEcCC-ChhheeeccCcce-EEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce
Confidence              011233455566666 6666667777766 77776                                      22211


Q ss_pred             CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                        +..+.....+++.++|+|+| .+||.|+.|+.|++|.+.......     .....-+..+|+.+.|++|++++.+.+.
T Consensus       440 --lv~~~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y-----~r~~k~~gs~ithLDwS~Ds~~~~~~S~  511 (626)
T KOG2106|consen  440 --LVTIHTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKY-----SRVGKCSGSPITHLDWSSDSQFLVSNSG  511 (626)
T ss_pred             --eEEEEecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEE-----EEeeeecCceeEEeeecCCCceEEeccC
Confidence              12222236789999999999 599999999999999998766443     1233345699999999999999999999


Q ss_pred             CCcEEEEE
Q 035558          245 STKLQILR  252 (253)
Q Consensus       245 ~~~i~vw~  252 (253)
                      |-.|-.|.
T Consensus       512 d~eiLyW~  519 (626)
T KOG2106|consen  512 DYEILYWK  519 (626)
T ss_pred             ceEEEEEc
Confidence            99998884

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=2e-24  Score=165.53  Aligned_cols=228  Identities=16%  Similarity=0.208  Sum_probs=183.6

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQL   81 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~   81 (253)
                      .+.+.||+. .|+|||+... ....++..+..-...   ..|.++... ++++.|++|+.-.++.|||+.....  ...+
T Consensus       431 trhVyTgGkgcVKVWdis~p-g~k~PvsqLdcl~rd---nyiRSckL~-pdgrtLivGGeastlsiWDLAapTprikael  505 (705)
T KOG0639|consen  431 TRHVYTGGKGCVKVWDISQP-GNKSPVSQLDCLNRD---NYIRSCKLL-PDGRTLIVGGEASTLSIWDLAAPTPRIKAEL  505 (705)
T ss_pred             cceeEecCCCeEEEeeccCC-CCCCccccccccCcc---cceeeeEec-CCCceEEeccccceeeeeeccCCCcchhhhc
Confidence            356778887 9999999875 223344444443222   568899999 8999999999999999999976543  3334


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      ....-..++++.+ |.++..+++.||.|.|||+++..   .+....+|...+.|+..++ +|..|-+|+-|+. |+.||+
T Consensus       506 tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~---~VrqfqGhtDGascIdis~-dGtklWTGGlDnt-vRcWDl  580 (705)
T KOG0639|consen  506 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT---LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNT-VRCWDL  580 (705)
T ss_pred             CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---eeecccCCCCCceeEEecC-CCceeecCCCccc-eeehhh
Confidence            3334567788889 99999999999999999999886   4556678888999999999 9999999999999 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      |...++ ... .....|.++.++|+++ +|+.|-+.+.+.|-.....++        ..+..|.+-|.++.|.+.|+.++
T Consensus       581 regrql-qqh-dF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp~k--------yqlhlheScVLSlKFa~cGkwfv  649 (705)
T KOG0639|consen  581 REGRQL-QQH-DFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKPEK--------YQLHLHESCVLSLKFAYCGKWFV  649 (705)
T ss_pred             hhhhhh-hhh-hhhhhheecccCCCcc-ceeeecccCcEEEEecCCccc--------eeecccccEEEEEEecccCceee
Confidence            987652 221 1246799999999995 999999999998887766543        46778999999999999999999


Q ss_pred             EEEcCCcEEEEEC
Q 035558          241 AIAFSTKLQILRV  253 (253)
Q Consensus       241 ~~~~~~~i~vw~l  253 (253)
                      +.+.|+-+..|+.
T Consensus       650 StGkDnlLnawrt  662 (705)
T KOG0639|consen  650 STGKDNLLNAWRT  662 (705)
T ss_pred             ecCchhhhhhccC
Confidence            9999999998874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-23  Score=158.43  Aligned_cols=235  Identities=11%  Similarity=0.134  Sum_probs=182.8

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |.+...+++++.  .++.||+.+.  ....+..+.+++.    ..+.....+ +++++|+..+..|.|.+....+++.+.
T Consensus       267 p~G~~~i~~s~rrky~ysyDle~a--k~~k~~~~~g~e~----~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~  339 (514)
T KOG2055|consen  267 PNGHSVIFTSGRRKYLYSYDLETA--KVTKLKPPYGVEE----KSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELIT  339 (514)
T ss_pred             CCCceEEEecccceEEEEeecccc--ccccccCCCCccc----chhheeEec-CCCCeEEEcccCceEEeehhhhhhhhh
Confidence            444447777775  9999999874  3334444555552    467778888 889999999999999999999999999


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      .++ -.+.|.+++|+ ++..|++++.+|.|.+||+++..+..........  .-++++.++ ++.++|+|+..|- |.||
T Consensus       340 s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v--~gts~~~S~-ng~ylA~GS~~Gi-VNIY  414 (514)
T KOG2055|consen  340 SFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV--HGTSLCISL-NGSYLATGSDSGI-VNIY  414 (514)
T ss_pred             eee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc--ceeeeeecC-CCceEEeccCcce-EEEe
Confidence            888 57899999999 9999999999999999999999755444332221  445677778 8899999999998 9999


Q ss_pred             ECCC-----CCCCeeeecccccceeEEEEecCCCCeEEEec--CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558          159 DIRF-----PTLPVVELQRHQASVNAIAWAPHSSCHICTAG--DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ  231 (253)
Q Consensus       159 d~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  231 (253)
                      |..+     ..+|++.+..-...|++|+|+|+. ++|+.+|  .+..+++-.+.+...-.   -.| .....-+.|++++
T Consensus       415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFs---NfP-~~n~~vg~vtc~a  489 (514)
T KOG2055|consen  415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFS---NFP-TSNTKVGHVTCMA  489 (514)
T ss_pred             ccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeec---cCC-CCCCcccceEEEE
Confidence            9654     235677777778899999999999 6888877  57899999888755221   001 1123456799999


Q ss_pred             EcCCCCceEEEEcCCcEEEEEC
Q 035558          232 WSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |+|.+.+++.+...+++.+|+|
T Consensus       490 FSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  490 FSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ecCCCceEEeecCCCceeeEee
Confidence            9999988888889999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=141.45  Aligned_cols=200  Identities=16%  Similarity=0.208  Sum_probs=150.0

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEecc------Cce---------eeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE------REA---------VDTQLIAHDKEVYDIAWG-GVGVFASVSADG  106 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~------~~~---------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg  106 (253)
                      ..|.+++|+ |.+.+.+.|+...+.+|....      .+.         ..+.-+-|++.|.|.+|+ +++++++|+.|.
T Consensus        33 qairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   33 QAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            589999999 899999999999999886432      211         111223588999999999 999999999999


Q ss_pred             cEEEEEcCCCCCee--eeeccCCCCCCeeEEEeeC---------------------------------------------
Q 035558          107 SVRVFDLRDKEHST--IIYESSEPDTPLVRLGWNK---------------------------------------------  139 (253)
Q Consensus       107 ~i~i~d~~~~~~~~--~~~~~~~~~~~i~~~~~~~---------------------------------------------  139 (253)
                      +|++..++...+..  .-.+..-|.+.|..++|-.                                             
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys  191 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS  191 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence            99998765433211  0111112222333333211                                             


Q ss_pred             CCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC
Q 035558          140 QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE  212 (253)
Q Consensus       140 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  212 (253)
                      .++-.+++|+.|.. |++||++-.. ++..+..       ....|.+++..|.| ++|++|-.|....+||++.+.... 
T Consensus       192 wn~~m~~sgsqdkt-irfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq-  267 (350)
T KOG0641|consen  192 WNGAMFASGSQDKT-IRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQ-  267 (350)
T ss_pred             ecCcEEEccCCCce-EEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceee-
Confidence            15667788888888 9999999755 3444432       23579999999999 799999999999999999887554 


Q ss_pred             CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          213 GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                            .+..|...|.++.|+|...++++++.|..|++-+|
T Consensus       268 ------~f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  268 ------RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             ------eeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence                  78899999999999999999999999999998764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.3e-23  Score=167.01  Aligned_cols=210  Identities=19%  Similarity=0.300  Sum_probs=168.0

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      ..|++++ + +|.+|.+..+    +.-..+..-.     -++++++|+ .+|+++|.|+.|-.|++.+..+......+++
T Consensus        67 ~~f~~~s~~~tv~~y~fps~----~~~~iL~Rft-----lp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg  136 (933)
T KOG1274|consen   67 NHFLTGSEQNTVLRYKFPSG----EEDTILARFT-----LPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG  136 (933)
T ss_pred             cceEEeeccceEEEeeCCCC----Cccceeeeee-----ccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecc
Confidence            3566666 4 9999999886    4444444444     789999999 9999999999999999999999999999999


Q ss_pred             ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-----CCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           84 HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP-----DTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        84 ~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      |.++|.++.|+ .+++||+.+-||.|++||+.++.....+......     ...+..++|+| ++..+++.+.++. |++
T Consensus       137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~-Vkv  214 (933)
T KOG1274|consen  137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNT-VKV  214 (933)
T ss_pred             cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCe-EEE
Confidence            99999999999 9999999999999999999988654433322111     33677899999 7667777777888 999


Q ss_pred             EECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          158 LDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       158 ~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      |+...... ...+.  .+...+..++|+|+| +|||+++.||.|.|||..+..           .......|++++|.|+
T Consensus       215 y~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~-----------~~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  215 YSRKGWEL-QFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE-----------RHEFKRAVCCEAWKPN  281 (933)
T ss_pred             EccCCcee-heeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch-----------hccccceeEEEecCCC
Confidence            99887653 44443  344459999999999 799999999999999999833           1334678999999999


Q ss_pred             CCceE
Q 035558          236 QPDWV  240 (253)
Q Consensus       236 ~~~~~  240 (253)
                      ...+-
T Consensus       282 ~n~it  286 (933)
T KOG1274|consen  282 ANAIT  286 (933)
T ss_pred             CCeeE
Confidence            87443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=5.1e-23  Score=161.63  Aligned_cols=237  Identities=15%  Similarity=0.157  Sum_probs=169.1

Q ss_pred             CCCCceEEeecC--cEEEEEccCCcccc--ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRV--ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      |...++|+.+.+  .|.++|........  ..+.....|.     ..|..+.|- +....|++++.|.++++||+++.++
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~-----nAifDl~wa-pge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK-----NAIFDLKWA-PGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcchhhhhhccccccc-----ceeEeeccC-CCceeEEEccCCceeeeeeecccee
Confidence            345678888885  99999987641111  1234566787     899999999 5788899999999999999999987


Q ss_pred             eee--eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC--------------------eee----eeccCCCC
Q 035558           78 DTQ--LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH--------------------STI----IYESSEPD  129 (253)
Q Consensus        78 ~~~--~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--------------------~~~----~~~~~~~~  129 (253)
                      ...  +.+|...|.+++|.  +...|++|+.||.|.|||++-...                    .++    +.....+.
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            776  78999999999999  889999999999999999975430                    000    01111122


Q ss_pred             C----CeeEEEeeCCCCCEEEEEEe-CCCeEEEEECCCCCC-----Ce--eeeccc---ccceeEEEEecCCCCeEEEec
Q 035558          130 T----PLVRLGWNKQDPRYMATIIM-DSAKVVVLDIRFPTL-----PV--VELQRH---QASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       130 ~----~i~~~~~~~~~~~~l~~~~~-~~~~i~~~d~~~~~~-----~~--~~~~~~---~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      .    .|+.+.| . |...||+++. |+. |+|||+++...     +.  ..+..|   ...+.++.....|. +|++.+
T Consensus       215 ~ti~ssvTvv~f-k-De~tlaSaga~D~~-iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsC  290 (720)
T KOG0321|consen  215 NTIFSSVTVVLF-K-DESTLASAGAADST-IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASC  290 (720)
T ss_pred             CceeeeeEEEEE-e-ccceeeeccCCCcc-eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEe
Confidence            2    3444545 4 7888998888 777 99999998652     12  222233   33577788888885 666666


Q ss_pred             CCCcEEEEeccCCCCCCCCCCCCeeeccCC--CceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          195 DDSQALIWDLSSMGQPVEGGLDPILAYTAG--AEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       195 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .|++|++|++......-     ...+.++.  ..-..-..+|++.++++++.|....+|.+
T Consensus       291 tD~sIy~ynm~s~s~sP-----~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v  346 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISP-----VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV  346 (720)
T ss_pred             cCCcEEEEeccccCcCc-----hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence            69999999999876322     11222221  12223347899999999999999999975

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=4.8e-23  Score=149.99  Aligned_cols=227  Identities=15%  Similarity=0.249  Sum_probs=172.1

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec-cCcee--
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-EREAV--   77 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~--   77 (253)
                      |+..++++++.  -|++||.-++    +....+.+....+.-..-.+++|+ ++|..|++|. ...|+++|+ +.|+-  
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG----~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaGy-krcirvFdt~RpGr~c~  194 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTG----KLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAGY-KRCIRVFDTSRPGRDCP  194 (406)
T ss_pred             CccceeeeccccCceeeeecccc----ccccchhhhhhHHhhhhheeEEec-CCCCeEeecc-cceEEEeeccCCCCCCc
Confidence            45567777774  9999999987    666666654311111234589999 9999999875 579999999 55541  


Q ss_pred             eeee-----ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           78 DTQL-----IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        78 ~~~~-----~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ....     .+..+-|.+++|+  +...++.++....+-|+.-....+   +....+|.+.|+.+.|.+ +++.|.+|..
T Consensus       195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p---l~llggh~gGvThL~~~e-dGn~lfsGaR  270 (406)
T KOG2919|consen  195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP---LQLLGGHGGGVTHLQWCE-DGNKLFSGAR  270 (406)
T ss_pred             chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc---eeeecccCCCeeeEEecc-CcCeeccccc
Confidence            1111     2346788999999  777999999999999988777764   333447888999999999 9999999988


Q ss_pred             CCCeEEEEECCCCCCCeeeeccccc-ceeEEE--EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRHQA-SVNAIA--WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      ..-.|..||+|....++..+..|.. .-..+.  ..|.+ ++|++|+.||.|++||+.....+.      .....+...+
T Consensus       271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn~~------sv~~~~sd~v  343 (406)
T KOG2919|consen  271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGNEV------SVTGNYSDTV  343 (406)
T ss_pred             CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCCcc------cccccccccc
Confidence            6666999999998888888888876 333444  45788 699999999999999999855422      4666789999


Q ss_pred             eEEEEcCCCCceEEEEcCCc
Q 035558          228 EQLQWSSSQPDWVAIAFSTK  247 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~  247 (253)
                      +.++++|.-+ ++|.++...
T Consensus       344 NgvslnP~mp-ilatssGqr  362 (406)
T KOG2919|consen  344 NGVSLNPIMP-ILATSSGQR  362 (406)
T ss_pred             cceecCcccc-eeeeccCce
Confidence            9999999976 555555443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=151.96  Aligned_cols=235  Identities=14%  Similarity=0.218  Sum_probs=177.1

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeeeee--e
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDTQL--I   82 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~   82 (253)
                      ++++.+. .|++||..++    +.+..++++.     ..++.+.|... .+..+.+++.||+|++||++.......+  .
T Consensus        43 vav~lSngsv~lyd~~tg----~~l~~fk~~~-----~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGTG----QLLEEFKGPP-----ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             EEEEecCCeEEEEeccch----hhhheecCCC-----CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            4444556 9999999998    8899999999     78889999722 5778999999999999999877644433  3


Q ss_pred             ccc-ccEEEEEec-CCCeEEEEeC----CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           83 AHD-KEVYDIAWG-GVGVFASVSA----DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        83 ~~~-~~v~~~~~~-~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      .+. .+..+++-+ ..+.+++|..    +-.|.+||+|..+..... -...|...|+++.|+|.+.++|++|+.||- |.
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~-~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vn  191 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ-LNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VN  191 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh-hhhhccCcceeEEecCCCCCeEEeecccce-EE
Confidence            444 456677776 7778887753    678999999998752212 223566799999999999999999999998 99


Q ss_pred             EEECCCCCC--CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC----------------------
Q 035558          157 VLDIRFPTL--PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE----------------------  212 (253)
Q Consensus       157 ~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------  212 (253)
                      +||+....+  ++.....|...|.++.|..++-+.+.+-+...+..+|+++.+.....                      
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~  271 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN  271 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence            999986542  24444457778999999988866788889999999999987652110                      


Q ss_pred             --------------------------------CCCCCeeecc-CCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          213 --------------------------------GGLDPILAYT-AGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       213 --------------------------------~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                                                      ....+..+.+ |..-|+++.|...+..++++|.|+.+.+|+
T Consensus       272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence                                            0011122222 455677777877777788999999999997

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.91  E-value=8e-23  Score=146.81  Aligned_cols=237  Identities=16%  Similarity=0.258  Sum_probs=177.8

Q ss_pred             CCCCceEEeec--C----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC----CCEEEEEeCCCeEEEEe
Q 035558            2 CQKPDLLATSS--D----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE----PRRIGTSSIDTTCTIWD   71 (253)
Q Consensus         2 p~~~~~l~~~~--~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~vwd   71 (253)
                      |..+.+||.|+  +    .|.|-.++....+...... -.|.     .+++.+.|.|..    .++||+.+  ..+|+|.
T Consensus        56 ~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~-----YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWr  127 (364)
T KOG0290|consen   56 PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHP-----YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWR  127 (364)
T ss_pred             CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCC-----CCccceEecCCccccCcchhhccc--CeEEEEe
Confidence            44567788886  2    7888777653222222222 2344     899999999533    35666654  4799999


Q ss_pred             ccCce----eeeee-----ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558           72 IEREA----VDTQL-----IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        72 ~~~~~----~~~~~-----~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      +...+    +...+     ..+..++++..|+  +.+++.+++-|-+..+||++++....+....-.|...|..++|...
T Consensus       128 i~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~  207 (364)
T KOG0290|consen  128 IGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG  207 (364)
T ss_pred             ccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC
Confidence            87422    11111     2456799999999  9999999999999999999997432233344477789999999986


Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCC-CcEEEEeccCCCCCCCCCCCC
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDD-SQALIWDLSSMGQPVEGGLDP  217 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~  217 (253)
                      ..+.||+.+.||. ++++|+|........+.  ....+...++|+++.++++++-..| ..|.|.|++....+.      
T Consensus       208 s~~~FASvgaDGS-vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv------  280 (364)
T KOG0290|consen  208 SRDVFASVGADGS-VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV------  280 (364)
T ss_pred             ccceEEEecCCCc-EEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce------
Confidence            6789999999999 99999998663222222  2256789999999998899887654 689999999998776      


Q ss_pred             eeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558          218 ILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV  253 (253)
Q Consensus       218 ~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l  253 (253)
                      ..+.+|.+.|++++|.|..+ .++++|.|..+.+|+|
T Consensus       281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl  317 (364)
T KOG0290|consen  281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL  317 (364)
T ss_pred             ehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence            78889999999999999765 4668889999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.7e-23  Score=150.86  Aligned_cols=193  Identities=17%  Similarity=0.260  Sum_probs=156.1

Q ss_pred             CEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558           56 RRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL  132 (253)
Q Consensus        56 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i  132 (253)
                      +.+|++..+|.|++||..+++.+..+++++..+..+.|.   .+..+.+|+.||+|++||+|.......+........+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            568888899999999999999999999999999999998   46789999999999999999887655554433444477


Q ss_pred             eEEEeeCCCCCEEEEEEe---CCCeEEEEECCCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          133 VRLGWNKQDPRYMATIIM---DSAKVVVLDIRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       133 ~~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .+++.+- ..+.+++|..   ..-.|.+||.|+.++++..+ ..|...|++++|+|..+.+|++||.||-|.+||+....
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            7777765 6677777653   12249999999988755544 56999999999999999999999999999999998764


Q ss_pred             CCCCCCCCCeeeccCCCceeEEEEcCCC-CceEEEEcCCcEEEEEC
Q 035558          209 QPVEGGLDPILAYTAGAEIEQLQWSSSQ-PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~vw~l  253 (253)
                      ..    ........|...|..+.|...+ +.+.+.+......+|++
T Consensus       200 Ee----DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  200 EE----DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             ch----hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            22    1224556788899999999877 34888999999999985

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.8e-22  Score=144.24  Aligned_cols=190  Identities=15%  Similarity=0.252  Sum_probs=156.5

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      ..|.++.|+ +..+.|++++.||++++||+....+...++ |..++.+.+|.+...+++|+.||.|+.+|+.++..... 
T Consensus        14 d~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i-   90 (323)
T KOG1036|consen   14 DGISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI-   90 (323)
T ss_pred             hceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcceee-
Confidence            789999999 777777788899999999999887666666 89999999999888999999999999999999874322 


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                         ..|..++.++.+.+ ....+++|+.|+. |++||.|... ....+. ....|.++...  + ..|+.|+.|..+.+|
T Consensus        91 ---gth~~~i~ci~~~~-~~~~vIsgsWD~~-ik~wD~R~~~-~~~~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iy  160 (323)
T KOG1036|consen   91 ---GTHDEGIRCIEYSY-EVGCVISGSWDKT-IKFWDPRNKV-VVGTFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIY  160 (323)
T ss_pred             ---ccCCCceEEEEeec-cCCeEEEcccCcc-EEEEeccccc-cccccc-cCceEEEEecc--C-CEEEEeecCceEEEE
Confidence               36677999999998 8889999999999 9999999733 233333 34478888776  4 479999999999999


Q ss_pred             eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558          203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI  250 (253)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v  250 (253)
                      |+++...+.     ......-...+.+|++-|++..+++++-||++.+
T Consensus       161 DLRn~~~~~-----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  161 DLRNLDEPF-----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             Ecccccchh-----hhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence            999988665     1122344678999999998888999999998865

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.4e-24  Score=176.34  Aligned_cols=224  Identities=18%  Similarity=0.314  Sum_probs=173.9

Q ss_pred             cEEEEEccCCccc--cceeeeecCCCCccccCCeeEEEecCCCCC----EEEEEeCCCeEEEEeccCc------eeeeee
Q 035558           14 FLRVWRISDEDRR--VELKSLLNGNKNSEYCGPLTSFDWNEAEPR----RIGTSSIDTTCTIWDIERE------AVDTQL   81 (253)
Q Consensus        14 ~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~dg~i~vwd~~~~------~~~~~~   81 (253)
                      ++.||.++..+..  ++.+..+...      ...+.++|. +.+.    .|+.|..||.|-+||...-      ..+...
T Consensus        40 slEifeld~~~~~~dlk~~~s~~s~------~rF~kL~W~-~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~  112 (1049)
T KOG0307|consen   40 SLEIFELDFSDESSDLKPVGSLQSS------NRFNKLAWG-SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK  112 (1049)
T ss_pred             ccceeeecccCcccccccccccccc------ccceeeeec-ccCCCccceeeccccCCceEEecchhhccCcchHHHhhh
Confidence            5666666543122  2344444433      467899998 5544    4899999999999998652      255566


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ..|++.|..+.|+  .+++||+|+.||.|.|||+...+...... .......|.+++|+......|++++.++. +.|||
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~-~~iWD  190 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGR-AVIWD  190 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCC-ceecc
Confidence            7899999999999  77799999999999999999865332221 22345589999999877788999998888 99999


Q ss_pred             CCCCCCCeeeeccccc--ceeEEEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          160 IRFPTLPVVELQRHQA--SVNAIAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      +|..+ ++..+..+..  .+..++|+|+....+++++.|   -.|.+||++....+.      ..+.+|...|.++.|++
T Consensus       191 lr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~------k~~~~H~~GilslsWc~  263 (1049)
T KOG0307|consen  191 LRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL------KILEGHQRGILSLSWCP  263 (1049)
T ss_pred             ccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch------hhhcccccceeeeccCC
Confidence            99864 4665555443  578999999998888888865   479999999988776      56679999999999999


Q ss_pred             CC-CceEEEEcCCcEEEEEC
Q 035558          235 SQ-PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       235 ~~-~~~~~~~~~~~i~vw~l  253 (253)
                      .+ .++++++.|+++.+|+.
T Consensus       264 ~D~~lllSsgkD~~ii~wN~  283 (1049)
T KOG0307|consen  264 QDPRLLLSSGKDNRIICWNP  283 (1049)
T ss_pred             CCchhhhcccCCCCeeEecC
Confidence            88 56779999999999973

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=1.9e-21  Score=149.97  Aligned_cols=228  Identities=8%  Similarity=0.033  Sum_probs=156.6

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeeee
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      .++++++ + .|++||+.++    +....+..+.      .+.+++|+ ++++.+ ++++.++.|++||..+++....+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~----~~~~~~~~~~------~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~   70 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL----EVTRTFPVGQ------RPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLP   70 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC----ceEEEEECCC------CCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEecc
Confidence            4677766 4 9999999886    6677777654      46789999 777765 667788999999999888777666


Q ss_pred             cccccEEEEEec-CCCeEEE-EeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           83 AHDKEVYDIAWG-GVGVFAS-VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      .+.. +..++|+ +++.+++ ++.++.+++||+++.+....+.   . ...+..++|+| ++.+++++..++..+.+||.
T Consensus        71 ~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~---~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~  144 (300)
T TIGR03866        71 SGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP---V-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDT  144 (300)
T ss_pred             CCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee---C-CCCcceEEECC-CCCEEEEEecCCCeEEEEeC
Confidence            5443 4678898 7776654 4568999999998865333221   1 12467899999 89999988877654778898


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeE-EEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHI-CTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ++... ..... ....+..++|+|++ ++| +++..++.|++||+++++.....................++|+|+++.+
T Consensus       145 ~~~~~-~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~  221 (300)
T TIGR03866       145 KTYEI-VDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA  221 (300)
T ss_pred             CCCeE-EEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence            76542 33222 23345789999999 466 4555799999999998753220000000000011234578999999875


Q ss_pred             E-EEEcCCcEEEEEC
Q 035558          240 V-AIAFSTKLQILRV  253 (253)
Q Consensus       240 ~-~~~~~~~i~vw~l  253 (253)
                      + +.+.++.+.+|++
T Consensus       222 ~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       222 FVALGPANRVAVVDA  236 (300)
T ss_pred             EEEcCCCCeEEEEEC
Confidence            4 4556778999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=3.3e-21  Score=148.69  Aligned_cols=225  Identities=13%  Similarity=0.126  Sum_probs=155.1

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEE-EeCCCeEEEEeccCceee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT-SSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~   78 (253)
                      |+...++++++ + .|++||..++    +....+..+.      .+..++|+ ++++.+++ +..++.|++||+++.+.+
T Consensus        40 ~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~------~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~  108 (300)
T TIGR03866        40 KDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGP------DPELFALH-PNGKILYIANEDDNLVTVIDIETRKVL  108 (300)
T ss_pred             CCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCC------CccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence            44444445655 4 9999999886    5555555543      34678899 77776654 456899999999988777


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCC-cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-eCCCeE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADG-SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-MDSAKV  155 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~~i  155 (253)
                      ..+.. ...+.+++|+ ++..++++..++ .+..||.++.+.......    ......++|+| ++..+++++ .++. |
T Consensus       109 ~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~-v  181 (300)
T TIGR03866       109 AEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----DQRPRFAEFTA-DGKELWVSSEIGGT-V  181 (300)
T ss_pred             eEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----CCCccEEEECC-CCCEEEEEcCCCCE-E
Confidence            66652 3456889999 999999888765 467789887653332211    12456799999 787776554 4666 9


Q ss_pred             EEEECCCCCCCeeeecccc-------cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          156 VVLDIRFPTLPVVELQRHQ-------ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      .+||+++.+. +..+..+.       .....++|+|++...+++.+.++.+.+||+++.+..        ....+...+.
T Consensus       182 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--------~~~~~~~~~~  252 (300)
T TIGR03866       182 SVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--------DYLLVGQRVW  252 (300)
T ss_pred             EEEEcCccee-eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--------EEEEeCCCcc
Confidence            9999987653 33332211       123568899999433444556778999999875532        2223456789


Q ss_pred             EEEEcCCCCceEEE-EcCCcEEEEEC
Q 035558          229 QLQWSSSQPDWVAI-AFSTKLQILRV  253 (253)
Q Consensus       229 ~~~~~~~~~~~~~~-~~~~~i~vw~l  253 (253)
                      +++|+|++++++++ +.++.|++|++
T Consensus       253 ~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       253 QLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             eEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            99999999987765 46899999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=3.3e-22  Score=149.12  Aligned_cols=208  Identities=18%  Similarity=0.297  Sum_probs=167.2

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-------eeeeeeecccccEEEEEec--CCCe
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-------AVDTQLIAHDKEVYDIAWG--GVGV   98 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~--~~~~   98 (253)
                      +..-.+.+|+     ++|..++|+|.+.+.||+|+.|.+|.||.+-.+       +.+..+.+|...|--++|+  -.+.
T Consensus        72 ~~~P~v~GHt-----~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NV  146 (472)
T KOG0303|consen   72 ASYPLVCGHT-----APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNV  146 (472)
T ss_pred             CCCCCccCcc-----ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhh
Confidence            3445677888     999999999999999999999999999998654       3566788999999999999  8889


Q ss_pred             EEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc-ce
Q 035558           99 FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA-SV  177 (253)
Q Consensus        99 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~i  177 (253)
                      |++++.|.+|.+||+.+++....+    .|...|+++.|+. +|.++++.+.|.. |+|||.+++.. +..-.+|.+ .-
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~-dGs~l~TtckDKk-vRv~dpr~~~~-v~e~~~heG~k~  219 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNR-DGSLLCTTCKDKK-VRVIDPRRGTV-VSEGVAHEGAKP  219 (472)
T ss_pred             HhhccCCceEEEEeccCCceeeec----CCCCeEEEEEecc-CCceeeeecccce-eEEEcCCCCcE-eeecccccCCCc
Confidence            999999999999999999843332    2777999999999 9999999999999 99999999764 666677776 34


Q ss_pred             eEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          178 NAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       178 ~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      ..+-|-.++ .++.||-   .+..+.+||..+.+.|.     .......++.|.---|.++.+.+. ++-.|+.||.|++
T Consensus       220 ~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-----~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  220 ARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-----ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             ceeEEeccC-ceeeeccccccccceeccCcccccCcc-----eeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence            567788888 4555554   58899999999888765     223334566676666888877544 6667899999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.7e-21  Score=154.03  Aligned_cols=224  Identities=17%  Similarity=0.272  Sum_probs=181.4

Q ss_pred             eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc
Q 035558            7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH   84 (253)
Q Consensus         7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~   84 (253)
                      .||.+- + .|.+|++..+   +-+...+.+++.    ..|-+++|+  ++..|++.+.+|.|.-||+.+++....+...
T Consensus        39 ~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~d----rsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~  109 (691)
T KOG2048|consen   39 QLAVSRTDGNIEIWNLSNN---WFLEPVIHGPED----RSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN  109 (691)
T ss_pred             ceeeeccCCcEEEEccCCC---ceeeEEEecCCC----CceeeEEEc--cCCeEEeecCCceEEEEecccCceeEEecCC
Confidence            355554 5 9999999875   455666777664    789999998  4566788889999999999999999999888


Q ss_pred             cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558           85 DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP  163 (253)
Q Consensus        85 ~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  163 (253)
                      .+.|++++.+ .+..++.|++||.+..++...++ +.........++.+.+++|+| ++..++.|+.||. |++||..++
T Consensus       110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~-Iriwd~~~~  186 (691)
T KOG2048|consen  110 GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGV-IRIWDVKSG  186 (691)
T ss_pred             CcceeEEEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccceEEEEEecC-CccEEEecccCce-EEEEEcCCC
Confidence            8999999999 88999999999977777776554 222233345567999999999 9999999999998 999999987


Q ss_pred             CCCee-------eecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          164 TLPVV-------ELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       164 ~~~~~-------~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      .. ++       .+.. ...-|+++.|-.++  .+++|..-|+|++||...+....       ....|...|.+++-.++
T Consensus       187 ~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiq-------S~~~h~adVl~Lav~~~  256 (691)
T KOG2048|consen  187 QT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQ-------SHSCHDADVLALAVADN  256 (691)
T ss_pred             ce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhh-------hhhhhhcceeEEEEcCC
Confidence            64 33       1111 33458899998776  89999999999999999887554       56678999999999999


Q ss_pred             CCceEEEEcCCcEEEEE
Q 035558          236 QPDWVAIAFSTKLQILR  252 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw~  252 (253)
                      +.+++++|.|+.+.-+.
T Consensus       257 ~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  257 EDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             CCeEEEccCCCceEEEE
Confidence            88999999999887654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.6e-22  Score=143.89  Aligned_cols=219  Identities=11%  Similarity=0.194  Sum_probs=165.0

Q ss_pred             EEeecC-cEEEEEccCCc----c----ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            8 LATSSD-FLRVWRISDED----R----RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         8 l~~~~~-~v~iw~~~~~~----~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +|.+.. .|.-+++....    .    .+.+...+..|.     ++|++++.+   +.++|+|+.|-+|+|||++....+
T Consensus         5 IvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~-----~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql   76 (362)
T KOG0294|consen    5 IVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHA-----GSITALAVS---GPYVASGSSDETIHIYDMRKRKQL   76 (362)
T ss_pred             EEeeeeeEEEEEEeccCccccccccceeeeccccccccc-----cceeEEEec---ceeEeccCCCCcEEEEeccchhhh
Confidence            333334 66666665431    1    122345567777     999999986   899999999999999999999999


Q ss_pred             eeeecccccEEEEEec-CC--CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           79 TQLIAHDKEVYDIAWG-GV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ..+-.|.+.|+++.|. +-  +.|++|+.||.|.+|+...-.   .+.....|.+.|+.++.+| .+++.++.+.|+. +
T Consensus        77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~---~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~-l  151 (362)
T KOG0294|consen   77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE---LLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQV-L  151 (362)
T ss_pred             cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE---EeeeecccccccceeEecC-CCceEEEEcCCce-e
Confidence            9999999999999999 43  389999999999999998775   4444456777899999999 9999999999998 9


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      +.||+-.++... .+. -....+.+.|+|.|+ +++.++. ..|-+|.+.+.....        ......++.++.|-..
T Consensus       152 r~WNLV~Gr~a~-v~~-L~~~at~v~w~~~Gd-~F~v~~~-~~i~i~q~d~A~v~~--------~i~~~~r~l~~~~l~~  219 (362)
T KOG0294|consen  152 RTWNLVRGRVAF-VLN-LKNKATLVSWSPQGD-HFVVSGR-NKIDIYQLDNASVFR--------EIENPKRILCATFLDG  219 (362)
T ss_pred             eeehhhcCccce-eec-cCCcceeeEEcCCCC-EEEEEec-cEEEEEecccHhHhh--------hhhccccceeeeecCC
Confidence            999998876422 221 122234499999996 6666664 468999988765221        1122356778888755


Q ss_pred             CCceEEEEcCCcEEEEE
Q 035558          236 QPDWVAIAFSTKLQILR  252 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw~  252 (253)
                      + .+++++.+..+++||
T Consensus       220 ~-~L~vG~d~~~i~~~D  235 (362)
T KOG0294|consen  220 S-ELLVGGDNEWISLKD  235 (362)
T ss_pred             c-eEEEecCCceEEEec
Confidence            4 688999999999987

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=2.6e-21  Score=156.33  Aligned_cols=233  Identities=11%  Similarity=0.159  Sum_probs=176.5

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD   85 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~   85 (253)
                      +++..++ .+++|++.++    +.+.+++++.     ..|+++.=+ |--+.++.|..+|+|.+++++.++.+.+++...
T Consensus       175 IvvGs~~G~lql~Nvrt~----K~v~~f~~~~-----s~IT~ieqs-PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~  244 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVRTG----KVVYTFQEFF-----SRITAIEQS-PALDVVAIGLENGTVIIFNLKFDKILMSFKQDW  244 (910)
T ss_pred             EEEeecCCcEEEEEeccC----cEEEEecccc-----cceeEeccC-CcceEEEEeccCceEEEEEcccCcEEEEEEccc
Confidence            3444445 9999999998    9999999999     899999988 778899999999999999999999999998446


Q ss_pred             ccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeecc--------------------------------------
Q 035558           86 KEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYES--------------------------------------  125 (253)
Q Consensus        86 ~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------------------------  125 (253)
                      ++|+.++|. ||+ .+++|+..|.+.+||++..+....+...                                      
T Consensus       245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p  324 (910)
T KOG1539|consen  245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP  324 (910)
T ss_pred             cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence            999999999 666 6677777899999999765422111100                                      


Q ss_pred             ------CC------------------------------------------------------------------------
Q 035558          126 ------SE------------------------------------------------------------------------  127 (253)
Q Consensus       126 ------~~------------------------------------------------------------------------  127 (253)
                            .+                                                                        
T Consensus       325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~  404 (910)
T KOG1539|consen  325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE  404 (910)
T ss_pred             hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence                  00                                                                        


Q ss_pred             ------------------------------------CC------CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558          128 ------------------------------------PD------TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus       128 ------------------------------------~~------~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                                                          +.      ..+++++.++ .|++.+.|...|. |-+|+++++-.
T Consensus       405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~-Id~fNmQSGi~  482 (910)
T KOG1539|consen  405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGT-IDRFNMQSGIH  482 (910)
T ss_pred             cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCe-EEEEEcccCee
Confidence                                                00      2344445554 5555555555555 66666665432


Q ss_pred             Ceeee---cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-------------------------------
Q 035558          166 PVVEL---QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV-------------------------------  211 (253)
Q Consensus       166 ~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------  211 (253)
                       ...+   ..|..+|++++...-+ +.+++++.+|.+++||........                               
T Consensus       483 -r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v  560 (910)
T KOG1539|consen  483 -RKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV  560 (910)
T ss_pred             -ecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence             4445   4789999999999888 799999999999999998754100                               


Q ss_pred             ---CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          212 ---EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       212 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                         ....-...+.+|+++|++++|||+|+.+++++.|+.|++||+
T Consensus       561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence               000112456689999999999999999999999999999996

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.5e-22  Score=144.11  Aligned_cols=195  Identities=15%  Similarity=0.202  Sum_probs=155.6

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY  123 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  123 (253)
                      -.|+.|+ +.|.+||+|..||.|.|||+.+...-..+.+|..+|++++|+ +|++|++++.|..|.+||+..+.+...+.
T Consensus        26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEec-cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            5689999 899999999999999999999998888899999999999999 99999999999999999999998665553


Q ss_pred             ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc---cccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR---HQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       124 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      .    .++|+.+.|+|.+.+.+++.-.+.. -.+.++..+...+.....   -+..-.+..|.+.| +++++|...|.+.
T Consensus       105 f----~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkll  178 (405)
T KOG1273|consen  105 F----DSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLL  178 (405)
T ss_pred             c----cCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCC-CEEEEecCcceEE
Confidence            3    3489999999977777777777766 667776653211111110   11122334688888 6999999999999


Q ss_pred             EEeccCCCCCCCCCCCCeeeccC-CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          201 IWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++|..+.+...       .+... ...|..+.++..|+.++.-+.|..||.+++
T Consensus       179 v~~a~t~e~va-------s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  179 VYDAETLECVA-------SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             EEecchheeee-------eeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence            99999986543       22222 478899999999999999999999999874

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=8.1e-22  Score=143.23  Aligned_cols=235  Identities=16%  Similarity=0.243  Sum_probs=174.3

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ..|.+||.|. + .|.|||+.+.    ...+.+.+|.     .+|++++|+ +++++|++++.|..|.+||+..+.+++.
T Consensus        33 ~~G~~lAvGc~nG~vvI~D~~T~----~iar~lsaH~-----~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   33 RWGDYLAVGCANGRVVIYDFDTF----RIARMLSAHV-----RPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cCcceeeeeccCCcEEEEEcccc----chhhhhhccc-----cceeEEEec-CCCCEeeeecCCceeEEEeccCCCceeE
Confidence            3578899887 4 9999999996    7788899999     899999999 9999999999999999999999998888


Q ss_pred             eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC-CCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           81 LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE-PDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        81 ~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ++ ...+|+...|+  +.+.+++.-.+..-.+-++..+.....-....+ .+....+..|++ .|++|++|...|. +.+
T Consensus       103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGk-llv  179 (405)
T KOG1273|consen  103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGK-LLV  179 (405)
T ss_pred             EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcce-EEE
Confidence            87 67899999999  666666666666667777765432111111111 111223345777 9999999999999 999


Q ss_pred             EECCCCCCCeeeecccc-cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-CCCCCCee---eccCCCceeEEEE
Q 035558          158 LDIRFPTLPVVELQRHQ-ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV-EGGLDPIL---AYTAGAEIEQLQW  232 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~---~~~~~~~v~~~~~  232 (253)
                      ||..+.+ ++..++... ..|.++.++..| .+|+.-+.|..||.|+++....+. ....++..   -.-...+-.++.|
T Consensus       180 ~~a~t~e-~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf  257 (405)
T KOG1273|consen  180 YDAETLE-CVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF  257 (405)
T ss_pred             Eecchhe-eeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence            9999865 467666555 678999999999 699999999999999998533221 00011111   1112445577889


Q ss_pred             cCCCCceEEEE-cCCcEEEEE
Q 035558          233 SSSQPDWVAIA-FSTKLQILR  252 (253)
Q Consensus       233 ~~~~~~~~~~~-~~~~i~vw~  252 (253)
                      +.+|.++++++ .-..+.||+
T Consensus       258 s~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  258 SGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             cCCccEEEeccccceeEEEEe
Confidence            99998777655 345688886

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=7.3e-22  Score=157.49  Aligned_cols=201  Identities=13%  Similarity=0.151  Sum_probs=161.9

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec----CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG----GVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      ..+.+++.+ |++++||+|..-|+++||++...+....+.+|+..|.|+.|+    ...+|++++.|..|++||...+- 
T Consensus       460 ~G~R~~~vS-p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-  537 (1080)
T KOG1408|consen  460 FGFRALAVS-PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-  537 (1080)
T ss_pred             cceEEEEEC-CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-
Confidence            468899999 999999999999999999999999999999999999999999    56789999999999999998765 


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCC-CEEEEEEeCCCeEEEEECCCCCCCeeeeccc-----ccceeEEEEecCCCCeEEE
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDP-RYMATIIMDSAKVVVLDIRFPTLPVVELQRH-----QASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~  192 (253)
                       ..+....+|...|+++.|--.+. ..+++++.|.. |++--.++... ...+..|     ...++.|+..|.. +++++
T Consensus       538 -~l~qtld~HSssITsvKFa~~gln~~MiscGADks-imFr~~qk~~~-g~~f~r~t~t~~ktTlYDm~Vdp~~-k~v~t  613 (1080)
T KOG1408|consen  538 -DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS-IMFRVNQKASS-GRLFPRHTQTLSKTTLYDMAVDPTS-KLVVT  613 (1080)
T ss_pred             -chhhhhcccccceeEEEEeecCCceEEEeccCchh-hheehhccccC-ceeccccccccccceEEEeeeCCCc-ceEEE
Confidence             34445567788999999987332 56888888886 65543332221 2222222     3468999999998 69999


Q ss_pred             ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++.|..|+||+++++++..    ......+|.+....+...|.|-|+++.+.|.++.+++.
T Consensus       614 ~cQDrnirif~i~sgKq~k----~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVK----SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             EecccceEEEeccccceee----eecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence            9999999999999988654    01233457778889999999999999999999999873

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=2.5e-21  Score=156.00  Aligned_cols=223  Identities=17%  Similarity=0.280  Sum_probs=167.8

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeee----eccccc
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQL----IAHDKE   87 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~----~~~~~~   87 (253)
                      .+.+|++...   ..+...+...      .+|+++.|+|.++++++.|..+|.|.+||++.+..  ...+    ..|..+
T Consensus       223 ~~~vW~~~~p---~~Pe~~~~~~------s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  223 VLLVWSLKNP---NTPELVLESP------SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP  293 (555)
T ss_pred             eEEEEecCCC---CCceEEEecC------CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence            5889999874   2344444443      58999999999999999999999999999987764  2222    268899


Q ss_pred             EEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeec---------cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           88 VYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYE---------SSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        88 v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ++.+.|. +  +.-|++++.||.|..|+++.-..+.....         .......+++++|.+.+.+.+++|+..|. |
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~-v  372 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK-V  372 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE-E
Confidence            9999998 3  35599999999999999886543221111         11223478999999999999999999887 6


Q ss_pred             EEEECC---CCC----CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          156 VVLDIR---FPT----LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       156 ~~~d~~---~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      ..-+..   ...    +++..+..|.++|+++.++|-+...+++++ |.+++||.......|.      .....+...++
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl------~~~~~~~~~v~  445 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPL------LSLDSSPDYVT  445 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcc------hhhhhccceee
Confidence            653322   222    224456678899999999999976666766 9999999988555554      45566777899


Q ss_pred             EEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          229 QLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       229 ~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      +++|||..+.++ ++..+|.+.+|||
T Consensus       446 ~vaWSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  446 DVAWSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             eeEEcCcCceEEEEEcCCCceehhhh
Confidence            999999987666 5566999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=4.1e-21  Score=140.00  Aligned_cols=239  Identities=13%  Similarity=0.201  Sum_probs=171.0

Q ss_pred             CCCCCceEEeecC-cEEEEEccCCc---c-----ccceeeeecCCCCccccCCeeEEEec------CCCCCEEEEEeCCC
Q 035558            1 ECQKPDLLATSSD-FLRVWRISDED---R-----RVELKSLLNGNKNSEYCGPLTSFDWN------EAEPRRIGTSSIDT   65 (253)
Q Consensus         1 sp~~~~~l~~~~~-~v~iw~~~~~~---~-----~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~l~~~~~dg   65 (253)
                      ||+..-+|+..-+ .+++|++....   +     .......++-..    ...|...+|-      .|+.+++++.+.+.
T Consensus        58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e----g~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE----GETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc----CCEEEEEEeeeccccCCCccceeeeccccC
Confidence            4555555555556 99999985420   0     011111222111    1456676664      26778999999999


Q ss_pred             eEEEEeccCceeeeeeec--ccc---cEEEEEec-CCCeEEEEeCCCcEEEEEc-CCCCCeeee----eccCCCCCCeeE
Q 035558           66 TCTIWDIEREAVDTQLIA--HDK---EVYDIAWG-GVGVFASVSADGSVRVFDL-RDKEHSTII----YESSEPDTPLVR  134 (253)
Q Consensus        66 ~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~-~~~~l~~~~~dg~i~i~d~-~~~~~~~~~----~~~~~~~~~i~~  134 (253)
                      -|++||.-+++....+++  |..   ...+++|+ +|.+|++| ....|++||+ |.+......    ....+..+.+.+
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc  212 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC  212 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence            999999999998877763  433   44689999 99988775 5678999999 444322111    112344568899


Q ss_pred             EEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCC
Q 035558          135 LGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEG  213 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  213 (253)
                      ++|+|.+...++++++... +-+|.-.... |+..+.+|.+.|+.++|+++|. .|++|. .|-.|..||++....+.  
T Consensus       213 ~a~sP~~~~~~a~gsY~q~-~giy~~~~~~-pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv--  287 (406)
T KOG2919|consen  213 FAFSPMDSKTLAVGSYGQR-VGIYNDDGRR-PLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPV--  287 (406)
T ss_pred             eeccCCCCcceeeecccce-eeeEecCCCC-ceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchh--
Confidence            9999988889999998887 8887766544 6899999999999999999995 777777 58899999999987665  


Q ss_pred             CCCCeeeccCCC---ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          214 GLDPILAYTAGA---EIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       214 ~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                          ..+..|..   .-.-....|.++.|++++.+|.|++|++
T Consensus       288 ----~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl  326 (406)
T KOG2919|consen  288 ----YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL  326 (406)
T ss_pred             ----hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence                34444533   3334556788987777889999999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.8e-21  Score=145.56  Aligned_cols=242  Identities=15%  Similarity=0.209  Sum_probs=179.3

Q ss_pred             CCCceEEeecC--cEEEEEccCC--ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            3 QKPDLLATSSD--FLRVWRISDE--DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      .++++||+|+|  .+++|+++..  ...++++.....|.    ...|.|++|+ ...+++++|..+++|...|+++.+.+
T Consensus        66 ~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H----~SNIF~L~F~-~~N~~~~SG~~~~~VI~HDiEt~qsi  140 (609)
T KOG4227|consen   66 HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPH----RSNIFSLEFD-LENRFLYSGERWGTVIKHDIETKQSI  140 (609)
T ss_pred             cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCcc----ccceEEEEEc-cCCeeEecCCCcceeEeeecccceee
Confidence            46889999996  9999998753  11224444433322    1789999999 88899999999999999999998877


Q ss_pred             eeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           79 TQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        79 ~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ..+.  ...+.|+.+..+ -.+.|++.+.++.|.+||++....................+.|+|....+|++.+..++ +
T Consensus       141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G-~  219 (609)
T KOG4227|consen  141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG-P  219 (609)
T ss_pred             eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC-C
Confidence            7665  223589999999 88899999999999999999876333333333444578899999999999999999999 9


Q ss_pred             EEEECCCCCCCeee-----------------------------------------------ec-ccc-------cceeEE
Q 035558          156 VVLDIRFPTLPVVE-----------------------------------------------LQ-RHQ-------ASVNAI  180 (253)
Q Consensus       156 ~~~d~~~~~~~~~~-----------------------------------------------~~-~~~-------~~i~~~  180 (253)
                      .+||.+....++..                                               ++ .|.       ..+.++
T Consensus       220 ~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~  299 (609)
T KOG4227|consen  220 NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSM  299 (609)
T ss_pred             CceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeee
Confidence            99999875431110                                               00 011       134455


Q ss_pred             EEecCCCCeEEEecCCCcEEEEeccCCCCCC----------------CCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPV----------------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                      +|..+  +.+++|+.+-.|.+|.+.......                ........+.+|..-++.+.|+|....+++.+-
T Consensus       300 ~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV  377 (609)
T KOG4227|consen  300 TFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV  377 (609)
T ss_pred             eeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch
Confidence            55544  469999999999999987543111                011223567799999999999999877778889


Q ss_pred             CCcEEEEE
Q 035558          245 STKLQILR  252 (253)
Q Consensus       245 ~~~i~vw~  252 (253)
                      .+.+++|.
T Consensus       378 E~~~KlWS  385 (609)
T KOG4227|consen  378 ENSFKLWS  385 (609)
T ss_pred             hhheeccc
Confidence            99999994

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=2.2e-21  Score=153.79  Aligned_cols=237  Identities=12%  Similarity=0.164  Sum_probs=182.9

Q ss_pred             CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----e
Q 035558            4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----V   77 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~   77 (253)
                      +++.+++-+.  ..++|..... ........+.||.     +.|.+++|+ |.|.+|++.+.|.+-|++-.-..+    .
T Consensus       327 n~~~ii~~g~~Gg~hlWkt~d~-~~w~~~~~iSGH~-----~~V~dv~W~-psGeflLsvs~DQTTRlFa~wg~q~~wHE  399 (764)
T KOG1063|consen  327 NSNVIIAHGRTGGFHLWKTKDK-TFWTQEPVISGHV-----DGVKDVDWD-PSGEFLLSVSLDQTTRLFARWGRQQEWHE  399 (764)
T ss_pred             CCCEEEEecccCcEEEEeccCc-cceeecccccccc-----ccceeeeec-CCCCEEEEeccccceeeecccccccceee
Confidence            4455555553  9999994332 4455666778898     899999999 899999999999999998765222    3


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC--------------------------------CCee----
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK--------------------------------EHST----  120 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~--------------------------------~~~~----  120 (253)
                      +...+-|...++|++|- ....|++|.++..+|+|+....                                +...    
T Consensus       400 iaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~  479 (764)
T KOG1063|consen  400 IARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET  479 (764)
T ss_pred             ecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence            44445688899999998 5778999999999999976210                                0000    


Q ss_pred             -------------------------------------eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC----eEEEEE
Q 035558          121 -------------------------------------IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA----KVVVLD  159 (253)
Q Consensus       121 -------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~i~~~d  159 (253)
                                                           .+.+.-+|...|++++.+| +++++|+++....    .|++|+
T Consensus       480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~  558 (764)
T KOG1063|consen  480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWN  558 (764)
T ss_pred             ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEe
Confidence                                                 0001122556799999999 9999999886542    489999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ..+..+ ++.+..|+-.|+.++|+||+ ++|++.|.|+++.+|.........   ........|..-|.+..|+|++.++
T Consensus       559 t~~W~~-~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e---~~fa~~k~HtRIIWdcsW~pde~~F  633 (764)
T KOG1063|consen  559 TANWLQ-VQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDE---FRFACLKAHTRIIWDCSWSPDEKYF  633 (764)
T ss_pred             ccchhh-hheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchh---hhhccccccceEEEEcccCccccee
Confidence            988665 67899999999999999999 799999999999999986554332   1112356799999999999999999


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.|..++||++
T Consensus       634 aTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  634 ATASRDKKVKVWEE  647 (764)
T ss_pred             EEecCCceEEEEec
Confidence            99999999999974

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.4e-20  Score=136.37  Aligned_cols=209  Identities=18%  Similarity=0.321  Sum_probs=154.0

Q ss_pred             cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----eeeeeeecccccEEEEEec---CCCeEEEEeCCC
Q 035558           34 NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----AVDTQLIAHDKEVYDIAWG---GVGVFASVSADG  106 (253)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg  106 (253)
                      .+|.     +-|.++.|. +.|+.+|+++.|++|+|||.+..    .+....+.|.+.|..+.|.   -|+.+|+++.|+
T Consensus        10 s~h~-----DlihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen   10 SGHK-----DLIHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             cCCc-----ceeeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence            4566     789999999 89999999999999999997544    3666788999999999998   789999999999


Q ss_pred             cEEEEEcCCCC------CeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCCC-----Ceeeec---
Q 035558          107 SVRVFDLRDKE------HSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPTL-----PVVELQ---  171 (253)
Q Consensus       107 ~i~i~d~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~---  171 (253)
                      ++.||.-....      ............+.|+.+.|.|.. |-.+|+++.||. ++||+.-....     ...++.   
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~-lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI-LRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE-EEEEecCCccccccchhhhhhhhcc
Confidence            99999763211      112223344556699999999953 567888888988 99998765321     122222   


Q ss_pred             ----ccccceeEEEEecCC--CCeEEEecCC-----CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC---
Q 035558          172 ----RHQASVNAIAWAPHS--SCHICTAGDD-----SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP---  237 (253)
Q Consensus       172 ----~~~~~i~~~~~~~~~--~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  237 (253)
                          .+..+..|+.|+|..  +.+|+.|+.+     +.++||.........   .....+.+|..+|++++|.|+-.   
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw---~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW---LKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee---eeehhcCCCCCcceeeeeccccCCce
Confidence                356678899999842  2378888865     589999877654221   11235558999999999999743   


Q ss_pred             ceE-EEEcCCcEEEEEC
Q 035558          238 DWV-AIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~-~~~~~~~i~vw~l  253 (253)
                      +++ +++.|| |+||++
T Consensus       240 ~~lAvA~kDg-v~I~~v  255 (361)
T KOG2445|consen  240 HLLAVATKDG-VRIFKV  255 (361)
T ss_pred             eeEEEeecCc-EEEEEE
Confidence            344 455566 999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.5e-22  Score=148.90  Aligned_cols=197  Identities=16%  Similarity=0.196  Sum_probs=155.0

Q ss_pred             eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558           46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE  124 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  124 (253)
                      .+++|+ .++..+++|+.||++|||+..+...+.....|...|.++.|+ ++.+|++.+.| ..++|+.+++........
T Consensus       148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            578999 899999999999999999987777777788899999999999 99999999999 899999999965444332


Q ss_pred             cCCCCCCeeEEEeeCCCC---C-EEEEEEeCCCeEEEEECCCCCC----CeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558          125 SSEPDTPLVRLGWNKQDP---R-YMATIIMDSAKVVVLDIRFPTL----PVVELQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~---~-~l~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      . ..+.....+.|.. ++   . ++++.-..+..|..||+.....    +..+.......|.+++.+++| ++++.|+.|
T Consensus       226 ~-~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT~d  302 (398)
T KOG0771|consen  226 F-SKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALGTMD  302 (398)
T ss_pred             c-ccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEeccC
Confidence            2 2333566777876 33   2 3444434443477777754432    222233334579999999999 799999999


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |.|.|++..+.+...      .....|...|+.+.|+|+.+++.+.+.+....|..|
T Consensus       303 GsVai~~~~~lq~~~------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQ------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcEEEEEeceeeeeE------eehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            999999999988665      566679999999999999999999999998887653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=2.4e-21  Score=139.18  Aligned_cols=197  Identities=19%  Similarity=0.325  Sum_probs=154.3

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-CCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-AEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ||+.-+++-.+ .|.+|+++...   +....+......++....++-+|+| .+++.+++. .|+++..||+++.+....
T Consensus       133 Pns~klasm~dn~i~l~~l~ess---~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s  208 (370)
T KOG1007|consen  133 PNSDKLASMDDNNIVLWSLDESS---KIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS  208 (370)
T ss_pred             CCCCeeEEeccCceEEEEcccCc---chheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc
Confidence            37777888778 99999998862   2133333333333336788999997 577777765 589999999998877666


Q ss_pred             ee-cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           81 LI-AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        81 ~~-~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      +. +|...|.++.|+  ...+|++|+.||.|++||.|..+.  .+.....|...+.++.|+|...+++++++.|.. |.+
T Consensus       209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~L  285 (370)
T KOG1007|consen  209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNL  285 (370)
T ss_pred             hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEecCCCce-eEE
Confidence            65 788899999999  566899999999999999998773  455666777799999999988999999999998 999


Q ss_pred             EECCCCC----------------------------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          158 LDIRFPT----------------------------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       158 ~d~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      |......                            ..+.++..|+..|++++|+.-.+-.+++-+.||++.|=.+..
T Consensus       286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            8653211                            024456779999999999998888889999999998876654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.3e-21  Score=151.83  Aligned_cols=232  Identities=15%  Similarity=0.239  Sum_probs=170.4

Q ss_pred             CCceEEeec-C-cEEEEEccC----CccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--
Q 035558            4 KPDLLATSS-D-FLRVWRISD----EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--   75 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--   75 (253)
                      ....|++++ + .+++|++..    .....+++.++++|+     ++|.|++.. +++..+++|+.||+|+.|++...  
T Consensus       305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~-----gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p~n~d  378 (577)
T KOG0642|consen  305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE-----GPVLCVVVP-SNGEHCYSGGIDGTIRCWNLPPNQD  378 (577)
T ss_pred             CCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc-----CceEEEEec-CCceEEEeeccCceeeeeccCCCCC
Confidence            334566777 5 999999932    124567889999999     999999998 89999999999999999965421  


Q ss_pred             --------eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           76 --------AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        76 --------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                              .....+.||.+.|+.++++ ....|++++.||++++|+......  ..+......+.-.++.+-.......+
T Consensus       379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~ss~~a~~~  456 (577)
T KOG0642|consen  379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLSVDRTSSRPAHSL  456 (577)
T ss_pred             cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcceEeeccchhHhhh
Confidence                    1345677999999999999 888899999999999999887764  22222222235566666542223333


Q ss_pred             EEEeCCCeEEEEECCCCCCCeeeecc-------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558          147 TIIMDSAKVVVLDIRFPTLPVVELQR-------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      +....+. -.++++..... +..+..       -...++.+.++|.++ +.+++..|+.|+++|..++....       .
T Consensus       457 ~s~~~~~-~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~-------s  526 (577)
T KOG0642|consen  457 ASFRFGY-TSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILH-------S  526 (577)
T ss_pred             hhccccc-ccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccccch-------h
Confidence            3222222 33334333221 222221       123577889999985 99999999999999999987544       6


Q ss_pred             eccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...|...++++++.|+|.++++++.|+.+++|++
T Consensus       527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             eeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            6678999999999999999999999999999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.1e-20  Score=147.88  Aligned_cols=228  Identities=18%  Similarity=0.208  Sum_probs=181.0

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee--
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT--   79 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--   79 (253)
                      ++++++.++.+ .|.-||+.+.    +....++...     ++|.+++.+ +.+..++.|++||.++.++...++...  
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~l----k~~~~~d~~g-----g~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I~~~r  148 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHTL----KQKYNIDSNG-----GAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKITYKR  148 (691)
T ss_pred             cCCeEEeecCCceEEEEecccC----ceeEEecCCC-----cceeEEEeC-CccceEEeecCCceEEEEecCCceEEEEe
Confidence            35666666667 9999999987    7777777776     899999999 778899999999988888887776433  


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-----ccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY-----ESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      .+...++.|.+++|+ ++..+++|+.||.|++||..++.......     .....+.-|+++.|-  ....|++|...|.
T Consensus       149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~  226 (691)
T KOG2048|consen  149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGT  226 (691)
T ss_pred             ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCce
Confidence            344457899999999 99999999999999999999987655221     112233467888877  4568899988888


Q ss_pred             eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                       |.+||...+.. ++.+..|.+.|.+++..+++ .++++++.|+.|..|...+.....   ........|...+.+++..
T Consensus       227 -V~FWd~~~gTL-iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~w---v~~~~r~~h~hdvrs~av~  300 (691)
T KOG2048|consen  227 -VTFWDSIFGTL-IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEW---VINSRRDLHAHDVRSMAVI  300 (691)
T ss_pred             -EEEEcccCcch-hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccce---eeeccccCCcccceeeeee
Confidence             99999998775 88899999999999999998 499999999999999887765411   1112344688899999998


Q ss_pred             CCCCceEEEEcCCcEEE
Q 035558          234 SSQPDWVAIAFSTKLQI  250 (253)
Q Consensus       234 ~~~~~~~~~~~~~~i~v  250 (253)
                      ++  .+++++.|..+.+
T Consensus       301 ~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  301 EN--ALISGGRDFTLAI  315 (691)
T ss_pred             cc--eEEecceeeEEEE
Confidence            87  5888888887765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=9.2e-21  Score=150.37  Aligned_cols=229  Identities=14%  Similarity=0.173  Sum_probs=172.6

Q ss_pred             CCCCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558            2 CQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----   76 (253)
Q Consensus         2 p~~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----   76 (253)
                      |+..++++++++.+.+||.+.+    ....++++|+     +.|.+++|+ .+|..+++|+.|..|.+|+.+-.-     
T Consensus        22 PDGsqL~lAAg~rlliyD~ndG----~llqtLKgHK-----DtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~LkYS   91 (1081)
T KOG1538|consen   22 PDGTQLILAAGSRLLVYDTSDG----TLLQPLKGHK-----DTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILKYS   91 (1081)
T ss_pred             CCCceEEEecCCEEEEEeCCCc----cccccccccc-----ceEEEEEEc-cCCceeccCCCceeEEEecccccceeeec
Confidence            6666777777779999999998    8999999999     899999999 999999999999999999865321     


Q ss_pred             ---eeeee---------------------------ecc--cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558           77 ---VDTQL---------------------------IAH--DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY  123 (253)
Q Consensus        77 ---~~~~~---------------------------~~~--~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  123 (253)
                         .++.+                           ..|  ...+.+.+|. +|++|+.|-.+|+|.+-+-. +++...+.
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~  170 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE  170 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe
Confidence               11110                           001  2457778888 99999999999999997544 33444555


Q ss_pred             ccCCCCCCeeEEEeeCCCC----CEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcE
Q 035558          124 ESSEPDTPLVRLGWNKQDP----RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQA  199 (253)
Q Consensus       124 ~~~~~~~~i~~~~~~~~~~----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  199 (253)
                      .+.+.+.+|.+++|+|..+    ..+++.....+ +.+|.+....  +..-+.-.-...|+.+.|+|+ +++.|+.|+.+
T Consensus       171 Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~LsG~~--Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L  246 (1081)
T KOG1538|consen  171 RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQLSGKQ--IGKDRALNFDPCCISYFTNGE-YILLGGSDKQL  246 (1081)
T ss_pred             CCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEeccee--ecccccCCCCchhheeccCCc-EEEEccCCCce
Confidence            6667788999999999543    46777776666 8888876422  222222233457899999995 99999999999


Q ss_pred             EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .+|-.+. -..       -........|+.++..|+++.+..++.||++--+++
T Consensus       247 ~~fTR~G-vrL-------GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  247 SLFTRDG-VRL-------GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEEeecC-eEE-------eeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            9995433 211       133446789999999999999999999999876653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=9.8e-21  Score=141.32  Aligned_cols=197  Identities=17%  Similarity=0.249  Sum_probs=152.5

Q ss_pred             CCCCCceEEeecC--cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558            1 ECQKPDLLATSSD--FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE   75 (253)
Q Consensus         1 sp~~~~~l~~~~~--~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   75 (253)
                      .|.+...+|+|++  +|.||++..+.   ...+++..+.+|.     ..|--+.|+|.-.+.|++++.|.+|.+||+.++
T Consensus        90 ~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~-----rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg  164 (472)
T KOG0303|consen   90 CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ-----RRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG  164 (472)
T ss_pred             CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc-----eeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence            4888999999995  99999987641   2235678899999     899999999888899999999999999999999


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC-CeeEEEeeCCCCCEEEEEEeC--
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-PLVRLGWNKQDPRYMATIIMD--  151 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~~--  151 (253)
                      +.+.++. |..-|+++.|+ +|.+|++.+.|..|++||.++++...   ....|++ .-..+.|-. ++. +++.+..  
T Consensus       165 eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---e~~~heG~k~~Raifl~-~g~-i~tTGfsr~  238 (472)
T KOG0303|consen  165 EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---EGVAHEGAKPARAIFLA-SGK-IFTTGFSRM  238 (472)
T ss_pred             ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---ecccccCCCcceeEEec-cCc-eeeeccccc
Confidence            9888887 99999999999 99999999999999999999998433   3333332 334455655 677 4444432  


Q ss_pred             -CCeEEEEECCCCCCCeeeec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          152 -SAKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       152 -~~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                       ..++-+||..+.++|+.... ..+..|.---|.|+.....++|-.|+.||-|.+....
T Consensus       239 seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  239 SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence             23499999988777643322 2345677778889885344566689999999998754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.88  E-value=3.6e-20  Score=149.40  Aligned_cols=239  Identities=17%  Similarity=0.230  Sum_probs=177.4

Q ss_pred             CCCCCceEEeecC--cEEEEEccCCccc-cc-eeeeecCCCCccccCCeeEEEecCCCC--CEEEEEeCCCeEEEEeccC
Q 035558            1 ECQKPDLLATSSD--FLRVWRISDEDRR-VE-LKSLLNGNKNSEYCGPLTSFDWNEAEP--RRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         1 sp~~~~~l~~~~~--~v~iw~~~~~~~~-~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~   74 (253)
                      +|.++.++++|..  .|-+||+..+... .. .......|.     .+++.+.|- .+.  .-+++++.||.|..|+++.
T Consensus       251 ~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~-----~~v~~vvW~-~~~~~~~f~s~ssDG~i~~W~~~~  324 (555)
T KOG1587|consen  251 CPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS-----EPVTAVVWL-QNEHNTEFFSLSSDGSICSWDTDM  324 (555)
T ss_pred             ccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC-----cCeEEEEEe-ccCCCCceEEEecCCcEeeeeccc
Confidence            4778899999985  9999999886331 11 112223455     899999997 333  4488999999999998764


Q ss_pred             cee-e-----eeee------cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC-e----eeeeccCCCCCCeeEE
Q 035558           75 EAV-D-----TQLI------AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH-S----TIIYESSEPDTPLVRL  135 (253)
Q Consensus        75 ~~~-~-----~~~~------~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~----~~~~~~~~~~~~i~~~  135 (253)
                      ... .     ....      .-...+++++|.  +...|+.|+++|.|.--+-..... .    ........|.++|+.+
T Consensus       325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v  404 (555)
T KOG1587|consen  325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV  404 (555)
T ss_pred             cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence            331 1     1111      123468899999  889999999999988744333221 1    1233445677899999


Q ss_pred             EeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC-CCCCC
Q 035558          136 GWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ-PVEGG  214 (253)
Q Consensus       136 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~  214 (253)
                      .++|....++++++ |.+ +++|.......|+..+..+...+++++|+|-.+..|+++..||.|.+||+..... |.   
T Consensus       405 ~~nPF~~k~fls~g-DW~-vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv---  479 (555)
T KOG1587|consen  405 SRNPFYPKNFLSVG-DWT-VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV---  479 (555)
T ss_pred             ecCCCccceeeeec-cce-eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc---
Confidence            99998888888877 777 9999988556688888888889999999999888999999999999999986542 22   


Q ss_pred             CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                         .....+....+.+.|++.++.++++...|.+.+|+|
T Consensus       480 ---~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  480 ---LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             ---ccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence               222233667788899999987778888999999986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.3e-20  Score=147.35  Aligned_cols=225  Identities=15%  Similarity=0.221  Sum_probs=172.1

Q ss_pred             CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558            4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----   76 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----   76 (253)
                      .|.+||+|++  +||||.+.++    ++++++.--      +.|.|++|+|.....+++++....+.+.+..-|.     
T Consensus       411 ~G~wlasGsdDGtvriWEi~Tg----Rcvr~~~~d------~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~  480 (733)
T KOG0650|consen  411 SGEWLASGSDDGTVRIWEIATG----RCVRTVQFD------SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVG  480 (733)
T ss_pred             CcceeeecCCCCcEEEEEeecc----eEEEEEeec------ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhc
Confidence            7889999996  9999999998    888887655      5799999996433334444444445555432210     


Q ss_pred             --------------------------------eeeeeecccccEEEEEec-CCCeEEEEeCC---CcEEEEEcCCCCCee
Q 035558           77 --------------------------------VDTQLIAHDKEVYDIAWG-GVGVFASVSAD---GSVRVFDLRDKEHST  120 (253)
Q Consensus        77 --------------------------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~~~~  120 (253)
                                                      -+.....|..+|.++.|+ .|++|++...+   ..|.|+++...... 
T Consensus       481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-  559 (733)
T KOG0650|consen  481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-  559 (733)
T ss_pred             chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-
Confidence                                            011223477899999999 99999998764   46889988876532 


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                        .......+.+.++.|+| ...+|++++...  |++||+.... .++.+......|.+++.+|.|+ -|+.|+.|+.+.
T Consensus       560 --~PF~kskG~vq~v~FHP-s~p~lfVaTq~~--vRiYdL~kqe-lvKkL~tg~kwiS~msihp~GD-nli~gs~d~k~~  632 (733)
T KOG0650|consen  560 --SPFRKSKGLVQRVKFHP-SKPYLFVATQRS--VRIYDLSKQE-LVKKLLTGSKWISSMSIHPNGD-NLILGSYDKKMC  632 (733)
T ss_pred             --CchhhcCCceeEEEecC-CCceEEEEeccc--eEEEehhHHH-HHHHHhcCCeeeeeeeecCCCC-eEEEecCCCeeE
Confidence              23334455899999999 666666666543  9999998744 3667776778899999999996 899999999999


Q ss_pred             EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .||+.-..+|.      ..+.-|...+++|+||+.-+.+++++.|+.+.|+.
T Consensus       633 WfDldlsskPy------k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  633 WFDLDLSSKPY------KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             EEEcccCcchh------HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            99999888776      57778999999999999999777888889998874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=8.4e-20  Score=144.98  Aligned_cols=233  Identities=19%  Similarity=0.274  Sum_probs=176.5

Q ss_pred             CceEEeec-C-cEEEEEccCCccc-----------------ccee----------eeecCCCCccccCCeeEEEecCCCC
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRR-----------------VELK----------SLLNGNKNSEYCGPLTSFDWNEAEP   55 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~-----------------~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~   55 (253)
                      .-+||+++ | .||||.+...+..                 ....          ..+.||+     +-|.++.|+ |.+
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe-----DWV~sv~W~-p~~  279 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE-----DWVYSVWWH-PEG  279 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc-----cceEEEEEc-cch
Confidence            34677777 4 9999998654200                 0111          2234788     899999999 778


Q ss_pred             CEEEEEeCCCeEEEEeccCce-------eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC
Q 035558           56 RRIGTSSIDTTCTIWDIEREA-------VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE  127 (253)
Q Consensus        56 ~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  127 (253)
                      ..|++++.|.++.+|...+..       .+..+.+.........|+ +++.+++-+.-|-.++|...............+
T Consensus       280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSG  359 (764)
T KOG1063|consen  280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISG  359 (764)
T ss_pred             hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccc
Confidence            889999999999999887552       122233445568889999 999999999999999998444443344445568


Q ss_pred             CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC------------------------------------------
Q 035558          128 PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL------------------------------------------  165 (253)
Q Consensus       128 ~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~------------------------------------------  165 (253)
                      |...|..++|+| .|.++++.+.|.+ -+++-.-..+.                                          
T Consensus       360 H~~~V~dv~W~p-sGeflLsvs~DQT-TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP  437 (764)
T KOG1063|consen  360 HVDGVKDVDWDP-SGEFLLSVSLDQT-TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP  437 (764)
T ss_pred             ccccceeeeecC-CCCEEEEeccccc-eeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence            888999999999 8999999988876 55542210000                                          


Q ss_pred             -------------------------------------------------------------------------------C
Q 035558          166 -------------------------------------------------------------------------------P  166 (253)
Q Consensus       166 -------------------------------------------------------------------------------~  166 (253)
                                                                                                     .
T Consensus       438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE  517 (764)
T KOG1063|consen  438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE  517 (764)
T ss_pred             HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence                                                                                           1


Q ss_pred             eeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          167 VVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       167 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      ++.+-+|...|++++.+|++ +++++++..     ..|++|+..+..+..       .+.+|.-.|+.++|||++++|++
T Consensus       518 v~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~-------~L~~HsLTVT~l~FSpdg~~LLs  589 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQ-------ELEGHSLTVTRLAFSPDGRYLLS  589 (764)
T ss_pred             hHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhh-------eecccceEEEEEEECCCCcEEEE
Confidence            33345788899999999999 699998853     578999999877654       78899999999999999999999


Q ss_pred             EEcCCcEEEEEC
Q 035558          242 IAFSTKLQILRV  253 (253)
Q Consensus       242 ~~~~~~i~vw~l  253 (253)
                      ++.|..+.+|+.
T Consensus       590 vsRDRt~sl~~~  601 (764)
T KOG1063|consen  590 VSRDRTVSLYEV  601 (764)
T ss_pred             eecCceEEeeee
Confidence            999999999973

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.87  E-value=3.3e-19  Score=132.12  Aligned_cols=227  Identities=16%  Similarity=0.208  Sum_probs=164.8

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCceeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~   79 (253)
                      ++..+|..|+. ..++|..+..    ..    -.|...+- ..|..+-|+   ..++|..+.+.  .+++++++....+.
T Consensus        15 qd~~~lsvGs~~Gyk~~~~~~~----~k----~~~~~~~~-~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen   15 QDSTLLSVGSKDGYKIFSCSPF----EK----CFSKDTEG-VSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeEEEccCCCceeEEecCch----HH----hhcccCCC-eEEEEeecc---cceeEEEecCCCceEEEEEcccCceEE
Confidence            45567777886 8888888764    21    11111100 356666776   55666655543  58999998887777


Q ss_pred             eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE-EEeCCCeEEEE
Q 035558           80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT-IIMDSAKVVVL  158 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~~i~~~  158 (253)
                      .+. ...+|.++.++ .+.|+++-++ .|+|||+++.+....+...+.+...+..+++++ .+.++|. ++.+.+.|.+|
T Consensus        83 e~~-fpt~IL~VrmN-r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   83 EIF-FPTSILAVRMN-RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEe-cCCceEEEEEc-cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEE
Confidence            665 46789999886 4445555444 499999999987776666545555677777766 5556664 34444459999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc-EEEEeccCCCCCCCCCCCCeeecc-CCCceeEEEEcCCC
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ-ALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQLQWSSSQ  236 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  236 (253)
                      |+.+.+ ++..+..|++++.+++|+++| .+|||+|+.|+ ||||.+.+++...      ....+ -...|.+++|+|++
T Consensus       159 d~~nl~-~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~------eFRRG~~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  159 DTINLQ-PVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLY------EFRRGTYPVSIYSLSFSPDS  230 (391)
T ss_pred             Ecccce-eeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEee------eeeCCceeeEEEEEEECCCC
Confidence            999866 588999999999999999999 79999998886 5899999988655      12222 24578999999999


Q ss_pred             CceEEEEcCCcEEEEEC
Q 035558          237 PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~~~~~i~vw~l  253 (253)
                      ++|.+.+..++|++|+|
T Consensus       231 ~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  231 QFLAASSNTETVHIFKL  247 (391)
T ss_pred             CeEEEecCCCeEEEEEe
Confidence            98888899999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=1.4e-20  Score=137.47  Aligned_cols=188  Identities=18%  Similarity=0.297  Sum_probs=144.8

Q ss_pred             ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee--
Q 035558            6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL--   81 (253)
Q Consensus         6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--   81 (253)
                      -++|+++.  .|+|.|+..+    ++...+.+|.     .+|+.+.++|.+.+++++++.|..|++|++++..++..+  
T Consensus       106 p~la~~G~~GvIrVid~~~~----~~~~~~~ghG-----~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG  176 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSG----QCSKNYRGHG-----GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG  176 (385)
T ss_pred             eeEEeecceeEEEEEecchh----hhccceeccC-----ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence            35666664  9999999998    9999999999     899999999888999999999999999999999988776  


Q ss_pred             -ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCe----------------------e--ee-------------
Q 035558           82 -IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHS----------------------T--II-------------  122 (253)
Q Consensus        82 -~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~----------------------~--~~-------------  122 (253)
                       .+|.+.|.++.|+ ++..+++++.|.++++|++..++..                      .  +.             
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC  256 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC  256 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence             4799999999999 9999999999999999999733200                      0  00             


Q ss_pred             -------------------ecc-----------------------CCCCCCeeE--EEeeCCCCCEEEEEEeCCCeEEEE
Q 035558          123 -------------------YES-----------------------SEPDTPLVR--LGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus       123 -------------------~~~-----------------------~~~~~~i~~--~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                                         ..+                       ......|.-  .+|+| -++.||.|...|. |.+|
T Consensus       257 vrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~-v~vw  334 (385)
T KOG1034|consen  257 VRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGK-VYVW  334 (385)
T ss_pred             HHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCc-EEEE
Confidence                               000                       001112222  23445 5667788888888 9999


Q ss_pred             ECCCCCCCee-eecc--cccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558          159 DIRFPTLPVV-ELQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDLS  205 (253)
Q Consensus       159 d~~~~~~~~~-~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~  205 (253)
                      |++....+.. ++..  ....|...+|+.++ .+|+....|++|.-||..
T Consensus       335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence            9998664322 2221  23578999999999 599999999999999864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=8.9e-20  Score=136.55  Aligned_cols=228  Identities=18%  Similarity=0.338  Sum_probs=153.3

Q ss_pred             eEEeec-C-cEEEEEccCCc-----cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc------
Q 035558            7 LLATSS-D-FLRVWRISDED-----RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE------   73 (253)
Q Consensus         7 ~l~~~~-~-~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~------   73 (253)
                      .+++|+ | .|++|.+....     ...+....+..|.     ..|+++.|+ +++++|++|+.+|.|.+|...      
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~-----~aVN~vRf~-p~gelLASg~D~g~v~lWk~~~~~~~~  101 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT-----RAVNVVRFS-PDGELLASGGDGGEVFLWKQGDVRIFD  101 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCc-----ceeEEEEEc-CCcCeeeecCCCceEEEEEecCcCCcc
Confidence            788877 5 99999987641     2345667788888     899999999 899999999999999999876      


Q ss_pred             --C-----c---eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC
Q 035558           74 --R-----E---AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP  142 (253)
Q Consensus        74 --~-----~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  142 (253)
                        +     .   .....+.+|...|..++|+ +++++++++.|..+++||+..++....   ...|...+.-++|.| -+
T Consensus       102 ~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~---~~dh~~yvqgvawDp-l~  177 (434)
T KOG1009|consen  102 ADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI---LDDHEHYVQGVAWDP-LN  177 (434)
T ss_pred             ccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee---ccccccccceeecch-hh
Confidence              2     1   1344567899999999999 999999999999999999998873322   233333444455554 44


Q ss_pred             CEEEEEEeCCC---------------------------------------------------------------------
Q 035558          143 RYMATIIMDSA---------------------------------------------------------------------  153 (253)
Q Consensus       143 ~~l~~~~~~~~---------------------------------------------------------------------  153 (253)
                      +++++-+.|..                                                                     
T Consensus       178 qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~  257 (434)
T KOG1009|consen  178 QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGG  257 (434)
T ss_pred             hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCc
Confidence            44444333332                                                                     


Q ss_pred             ----eEEEEECCCCCCCeeeecccccceeEEEEecC--------C---------CCeEEEecCCCcEEEEeccCCCCCCC
Q 035558          154 ----KVVVLDIRFPTLPVVELQRHQASVNAIAWAPH--------S---------SCHICTAGDDSQALIWDLSSMGQPVE  212 (253)
Q Consensus       154 ----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------~---------~~~l~~~~~dg~i~iwd~~~~~~~~~  212 (253)
                          ..++|+-...+.|...+..-..+...+.|+|-        .         ...++.++ ...+.+||.+...... 
T Consensus       258 ~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~-  335 (434)
T KOG1009|consen  258 VFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLA-  335 (434)
T ss_pred             eeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceE-
Confidence                12333333333344444444444555555441        0         01233333 3467777776644222 


Q ss_pred             CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          213 GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                           ....-|-..|+.++|+++|..++..+.||...+.
T Consensus       336 -----~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~v  369 (434)
T KOG1009|consen  336 -----VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLV  369 (434)
T ss_pred             -----EEeeeeeeeecceeecCCCcEEEEeccCCceEEE
Confidence                 3444588999999999999988888989876543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3e-20  Score=144.28  Aligned_cols=219  Identities=15%  Similarity=0.241  Sum_probs=164.4

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec---CCCeEEEEe
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG---GVGVFASVS  103 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~  103 (253)
                      ...+.+.||+     +.|+++.|+ .+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-   +++++++|.
T Consensus        41 ~lE~eL~GH~-----GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   41 DLEAELTGHT-----GCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             chhhhhcccc-----ceecceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            4556788999     999999999 999999999999999999998888887775 899999999998   778999999


Q ss_pred             CCCcEEEEEcCCCCC-------eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee------
Q 035558          104 ADGSVRVFDLRDKEH-------STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL------  170 (253)
Q Consensus       104 ~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------  170 (253)
                      .|..|+++|+...+.       .........|...|..++-.|..+..+.+++.||. |+-||+|....+-...      
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHH
Confidence            999999999985331       11222233455577788888866799999999999 9999999855322221      


Q ss_pred             ---cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC-----CCC-------eeeccCC--------C--
Q 035558          171 ---QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG-----LDP-------ILAYTAG--------A--  225 (253)
Q Consensus       171 ---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-------~~~~~~~--------~--  225 (253)
                         ...--...++..+|..+.+|++|+.|-..++||.+....+....     ..|       ....+|.        .  
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence               12223567899999998999999999999999965433222100     001       1111221        1  


Q ss_pred             -ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          226 -EIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       226 -~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                       -++-+.|+|+|..++..-....|.+++|
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence             2466889999998887766777888875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=3.5e-19  Score=136.97  Aligned_cols=226  Identities=12%  Similarity=0.187  Sum_probs=168.6

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      .+.+++++ + .+++|+ +.     ++..+..-.      .++.|+.|+ |.+ .++.|+..|...+.|.++...+..-.
T Consensus       380 ~~q~~T~gqdk~v~lW~-~~-----k~~wt~~~~------d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e~~~lv~~~~  445 (626)
T KOG2106|consen  380 KNQLLTCGQDKHVRLWN-DH-----KLEWTKIIE------DPAECADFH-PSG-VVAVGTATGRWFVLDTETQDLVTIHT  445 (626)
T ss_pred             hhheeeccCcceEEEcc-CC-----ceeEEEEec------CceeEeecc-Ccc-eEEEeeccceEEEEecccceeEEEEe
Confidence            34555555 6 999999 33     444333222      578899999 667 89999999999999999866665444


Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      . ..++++++|+ +|.+||.|+.|+.|++|.+............... .+|+.+.|++ +++++.+-+.|-. |..|...
T Consensus       446 d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~e-iLyW~~~  521 (626)
T KOG2106|consen  446 D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYE-ILYWKPS  521 (626)
T ss_pred             c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecC-CCceEEeccCceE-EEEEccc
Confidence            4 8899999999 9999999999999999999877644333332222 6999999999 9999999888877 9999443


Q ss_pred             CCCC--Ceeee---------------cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          162 FPTL--PVVEL---------------QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       162 ~~~~--~~~~~---------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      .-.+  +++.+               ..+...|+.++-+.+. .++++|...|+|++|...-.+..    .......+|+
T Consensus       522 ~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~-~~lA~gdd~g~v~lf~yPc~s~r----A~~he~~ghs  596 (626)
T KOG2106|consen  522 ECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE-KLLASGDDFGKVHLFSYPCSSPR----APSHEYGGHS  596 (626)
T ss_pred             cCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh-hhhhccccCceEEEEccccCCCc----ccceeecccc
Confidence            2211  01111               1234455556666666 58999999999999987643321    1224667899


Q ss_pred             CceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          225 AEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +-|++++|.-..+.+++.+.|..|..|++
T Consensus       597 ~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  597 SHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            99999999999888999889999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=127.22  Aligned_cols=201  Identities=14%  Similarity=0.158  Sum_probs=144.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----------eeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----------AVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFD  112 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d  112 (253)
                      ..|.+-+|+ |.+++|++|..+|.|.+..+.+.          ..+-..++|.++|+.++|+ ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEee
Confidence            356677888 78999999999999999988642          1344457899999999997 55677766 59999998


Q ss_pred             cCCCCCe---eee-------eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEE
Q 035558          113 LRDKEHS---TII-------YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAW  182 (253)
Q Consensus       113 ~~~~~~~---~~~-------~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  182 (253)
                      .+.....   +.+       .......-.|++|...| ..+-++.++.|+. ++-||+++++. ..++++|+..|.++.-
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~-~y~~dlE~G~i-~r~~rGHtDYvH~vv~  164 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGV-IYQVDLEDGRI-QREYRGHTDYVHSVVG  164 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeE-EEEEEecCCEE-EEEEcCCcceeeeeee
Confidence            7654320   111       11011122689999999 5555555667888 99999999874 7899999999999998


Q ss_pred             ecCCCCeEEEecCCCcEEEEeccCCCCCCCCC--CCCeeeccC-CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGG--LDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      -...+ .+++|++||++|+||+++.+......  ..+..+..| +..|-+++-+.+   ++.++....+.+|+|
T Consensus       165 R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGgGp~lslwhL  234 (325)
T KOG0649|consen  165 RNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGGGPKLSLWHL  234 (325)
T ss_pred             cccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecCCCceeEEec
Confidence            55443 79999999999999999988544211  222333333 455777776654   666677778888875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1e-18  Score=127.48  Aligned_cols=238  Identities=12%  Similarity=0.148  Sum_probs=168.7

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCcc---ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDR---RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      |+-..++++.- + ++++|.+....+   ....+..-..|-...+...|..+-.. .++.+|++++.|..|.+|+++ |+
T Consensus       142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cc
Confidence            55555555554 3 899998765311   11111111111122233667677766 788999999999999999999 88


Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC-----CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK-----EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      .++.+......-+..+.+ +|+++++++.---|++|.+--.     +.....+...+|...|..++|+| +...+++.+.
T Consensus       220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSk  298 (420)
T KOG2096|consen  220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSK  298 (420)
T ss_pred             eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEec
Confidence            888887767777788889 9999999999888999987432     23344556778999999999999 9999999999


Q ss_pred             CCCeEEEEECCCCC----CC--eeee----cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558          151 DSAKVVVLDIRFPT----LP--VVEL----QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       151 ~~~~i~~~d~~~~~----~~--~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                      ||. +++||+.-..    .|  ++..    ..-.+....++.+|+| +.|+.+ ....+++|..+.++..      +...
T Consensus       299 DG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s-~gs~l~~~~se~g~~~------~~~e  369 (420)
T KOG2096|consen  299 DGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVS-FGSDLKVFASEDGKDY------PELE  369 (420)
T ss_pred             CCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEee-cCCceEEEEcccCccc------hhHH
Confidence            999 9999985321    11  1211    1112334489999999 455544 4568999999987643      2456


Q ss_pred             ccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ..|...|.+++|+++|++ ++.+.|..++++.
T Consensus       370 ~~h~~~Is~is~~~~g~~-~atcGdr~vrv~~  400 (420)
T KOG2096|consen  370 DIHSTTISSISYSSDGKY-IATCGDRYVRVIR  400 (420)
T ss_pred             HhhcCceeeEEecCCCcE-Eeeecceeeeeec
Confidence            679999999999999985 4555577777764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=3.3e-19  Score=126.73  Aligned_cols=228  Identities=14%  Similarity=0.187  Sum_probs=164.2

Q ss_pred             ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee-----
Q 035558            6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD-----   78 (253)
Q Consensus         6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----   78 (253)
                      ++|.+|..  .|++|++.+.    +....++.+..    ..|+.+.-- ++ ..+.+-+.|+.+.+|++.-+..+     
T Consensus        26 ~rL~sg~~~G~V~~w~lqt~----r~~~~~r~~g~----~~it~lq~~-p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si   95 (323)
T KOG0322|consen   26 ERLMSGLSVGIVKMWVLQTE----RDLPLIRLFGR----LFITNLQSI-PN-DSLDTQGRDPLLILWTIAYSAFISIHSI   95 (323)
T ss_pred             hhhhcccccceEEEEEeecC----ccchhhhhhcc----ceeeceeec-CC-cchhhcCCCceEEEEEccCcceEEEeee
Confidence            34556654  9999999997    66777774432    678888876 44 56778889999999998652100     


Q ss_pred             --------------------eee----------------------------ecccccEEEEEec--CCC--eEEEEeCCC
Q 035558           79 --------------------TQL----------------------------IAHDKEVYDIAWG--GVG--VFASVSADG  106 (253)
Q Consensus        79 --------------------~~~----------------------------~~~~~~v~~~~~~--~~~--~l~~~~~dg  106 (253)
                                          +.+                            .+..+.+.+..+.  ++.  +++.|-++|
T Consensus        96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg  175 (323)
T KOG0322|consen   96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG  175 (323)
T ss_pred             eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence                                000                            0112345555554  333  567788899


Q ss_pred             cEEEEEcCCCCCe-------eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC--CCe-eeecccccc
Q 035558          107 SVRVFDLRDKEHS-------TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT--LPV-VELQRHQAS  176 (253)
Q Consensus       107 ~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~-~~~~~~~~~  176 (253)
                      .+.+||+.++...       +.......++.++.++.+.+ .-+.=++++.+.. +..|.+....  .++ .++......
T Consensus       176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk-l~~~Sl~~s~gslq~~~e~~lknpG  253 (323)
T KOG0322|consen  176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK-LVMYSLNHSTGSLQIRKEITLKNPG  253 (323)
T ss_pred             eEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc-ceeeeeccccCcccccceEEecCCC
Confidence            9999999987422       23334456778999999987 4445566666776 8888876542  111 122223456


Q ss_pred             eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          177 VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       177 i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +..+..-||+ +.++|++.|++||||..++.....       .+.-|...|++++|+|+.+.+++++.|.+|.+|+|
T Consensus       254 v~gvrIRpD~-KIlATAGWD~RiRVyswrtl~pLA-------VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  254 VSGVRIRPDG-KILATAGWDHRIRVYSWRTLNPLA-------VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccceEEccCC-cEEeecccCCcEEEEEeccCCchh-------hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            8889999999 799999999999999999987554       77789999999999999888889999999999986

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=7.3e-19  Score=133.73  Aligned_cols=198  Identities=12%  Similarity=0.163  Sum_probs=156.6

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--eeeeeeecccccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--AVDTQLIAHDKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      +.|+++.|+ |....+++++.|+++++|.+...  ..++.+.-...+|.+.+|. +|. .+++++....++.||+.+.+.
T Consensus       214 ~~I~sv~FH-p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  214 GGITSVQFH-PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             CCceEEEec-CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            789999999 88999999999999999988643  3566666667899999999 777 899999999999999998874


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      .+.-......+..+..+..+| ++++|+..+..|. |++....+... +..++ ..+.|..++|+.++ +.|++++.+|.
T Consensus       293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~-I~lLhakT~el-i~s~K-ieG~v~~~~fsSds-k~l~~~~~~Ge  367 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGH-IHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDS-KELLASGGTGE  367 (514)
T ss_pred             ccccCCCCcccchhheeEecC-CCCeEEEcccCce-EEeehhhhhhh-hheee-eccEEeeEEEecCC-cEEEEEcCCce
Confidence            433332222234677788899 8999999999998 99998887653 55555 36789999999999 68888888999


Q ss_pred             EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          199 ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |.+||++......      .......-.-++++.++++.++++++..|.|.||+
T Consensus       368 V~v~nl~~~~~~~------rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  368 VYVWNLRQNSCLH------RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             EEEEecCCcceEE------EEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence            9999999875432      12222233446778889999888888889898886

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.8e-19  Score=134.93  Aligned_cols=206  Identities=12%  Similarity=0.163  Sum_probs=156.7

Q ss_pred             eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc------eeeeeee-cccccEEEEEec-CCCeEE
Q 035558           29 LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE------AVDTQLI-AHDKEVYDIAWG-GVGVFA  100 (253)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~-~~~~~v~~~~~~-~~~~l~  100 (253)
                      +.+.+.+|.     +.|.++.|+ .++++|++|+.|..+++|+++..      +++.... .|...|.+++|. .+.++.
T Consensus        48 ~qKD~~~H~-----GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~  121 (609)
T KOG4227|consen   48 CQKDVREHT-----GCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLY  121 (609)
T ss_pred             hhhhhhhhc-----cccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEe
Confidence            344566777     999999999 88999999999999999998643      3444333 356899999999 899999


Q ss_pred             EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee--eccccccee
Q 035558          101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQRHQASVN  178 (253)
Q Consensus       101 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~i~  178 (253)
                      +|..+++|.+.|+++.+.+.+.. .....+.|+.+..+| ..+.+++.+.++. |.+||.+....+...  .........
T Consensus       122 SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P-~DN~~~~~t~~~~-V~~~D~Rd~~~~~~~~~~AN~~~~F~  198 (609)
T KOG4227|consen  122 SGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHP-TDNTLIVVTRAKL-VSFIDNRDRQNPISLVLPANSGKNFY  198 (609)
T ss_pred             cCCCcceeEeeecccceeeeeec-ccCcccceeecccCC-CCceEEEEecCce-EEEEeccCCCCCCceeeecCCCccce
Confidence            99999999999999987544332 234456899999999 6889999999998 999999986644332  233455788


Q ss_pred             EEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          179 AIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ++.|+|..+.+|++.+..+-+.+||++....+.........+......-.++.|+|.|..+++.-
T Consensus       199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR  263 (609)
T KOG4227|consen  199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR  263 (609)
T ss_pred             eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence            99999999889999999999999999988765521111112222233346778999888777643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1.2e-19  Score=142.09  Aligned_cols=201  Identities=11%  Similarity=0.188  Sum_probs=161.1

Q ss_pred             CCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      .+|..+.|+ ..|.+|++..-+   ..|.|+++...+....|+-..+.|.++.|+ ...+|+.++. ..|++||+.....
T Consensus       522 k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel  599 (733)
T KOG0650|consen  522 KSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL  599 (733)
T ss_pred             Cccceeeee-cCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH
Confidence            789999999 899999988654   478899998777666676677889999999 6666666654 5799999987653


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      .+.+..   ....|..++.+| .|..|+.++.++. +..+|+.-..++.+.+..|...+++++|++.-+ ++++|+.||+
T Consensus       600 vKkL~t---g~kwiS~msihp-~GDnli~gs~d~k-~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgt  673 (733)
T KOG0650|consen  600 VKKLLT---GSKWISSMSIHP-NGDNLILGSYDKK-MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGT  673 (733)
T ss_pred             HHHHhc---CCeeeeeeeecC-CCCeEEEecCCCe-eEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCc
Confidence            333322   223899999999 8999999999999 999999988889999999999999999999985 9999999999


Q ss_pred             EEEEeccCCCCCCC--CCCCCeeeccCCCc----eeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          199 ALIWDLSSMGQPVE--GGLDPILAYTAGAE----IEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       199 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      +.||.-.-......  .......+.+|...    |..+.|||..+.+++++.|+.|++|
T Consensus       674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99996543322110  01122455677554    8999999999999999999999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=3.7e-18  Score=141.71  Aligned_cols=232  Identities=16%  Similarity=0.194  Sum_probs=163.9

Q ss_pred             eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec-CCCCCEEEEEeCCCeEEEEeccC-----ceee
Q 035558            7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN-EAEPRRIGTSSIDTTCTIWDIER-----EAVD   78 (253)
Q Consensus         7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~-----~~~~   78 (253)
                      .++++. . .|++||.+.+    +....+..+..  ....|+.+.+- ..+..++++|+.||.|+||+--.     .+.+
T Consensus      1078 ~i~~ad~r~~i~vwd~e~~----~~l~~F~n~~~--~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKG----RLLNGFDNGAF--PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred             eeEEcCCcceEEEEecccC----ceeccccCCCC--CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence            345555 4 9999999987    66555554431  11578888874 24567899999999999997432     2333


Q ss_pred             eeeec-------ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           79 TQLIA-------HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        79 ~~~~~-------~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ..+.+       ..+.=.-+.|. ...+|++++.-..|+|||........-+  ..+.+..++++.-+...++.+++|-.
T Consensus      1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di--P~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI--PYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred             EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec--ccCCCccceeecccccCCceEEEeec
Confidence            33321       11111345677 6666777777889999999987643322  23445578888776657899999999


Q ss_pred             CCCeEEEEECCCCCC--Ceeeecccccc--eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC---
Q 035558          151 DSAKVVVLDIRFPTL--PVVELQRHQAS--VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA---  223 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---  223 (253)
                      ||. |++||.|....  .+...+.|+..  |..+.+.+.|-..|++|+.||.|++||++......     ......|   
T Consensus      1230 DGs-vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~-----~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1230 DGS-VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET-----FLTIVAHWEY 1303 (1387)
T ss_pred             CCc-eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-----cceeeecccc
Confidence            999 99999997653  56777888887  99999999885569999999999999999852211     1122222   


Q ss_pred             CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++..+++..|+..+ ++|+|..+.++||++
T Consensus      1304 Gs~lTal~VH~hap-iiAsGs~q~ikIy~~ 1332 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAP-IIASGSAQLIKIYSL 1332 (1387)
T ss_pred             CccceeeeeccCCC-eeeecCcceEEEEec
Confidence            34699999999987 555555599999975

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.5e-18  Score=144.00  Aligned_cols=244  Identities=19%  Similarity=0.264  Sum_probs=167.8

Q ss_pred             CCCceEEeec-C-cEEEEEccCCc-cccceeeeec---CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558            3 QKPDLLATSS-D-FLRVWRISDED-RRVELKSLLN---GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~-~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      ++..++.+++ | .||||+-.... +..+.+....   ++........ .-+.|...+|.++ +++.-..|+|||.....
T Consensus      1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred             cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEE-ecCCeeEEEEEecccce
Confidence            3445666666 5 99999864431 2334443333   3321111122 3467884445544 44557899999999888


Q ss_pred             eeeeee-cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCC--eeEEEeeCCCCCEEEEEEeC
Q 035558           77 VDTQLI-AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTP--LVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        77 ~~~~~~-~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~~  151 (253)
                      ....+. +....|+++.-+  .++.+++|..||.|++||.+.......+.....|...  |..+.+.+..-..+++|+.+
T Consensus      1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred             eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence            777665 455678888877  7899999999999999999987653344333344434  99999998333469999999


Q ss_pred             CCeEEEEECCCC-CCCeeeecccc--c-ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          152 SAKVVVLDIRFP-TLPVVELQRHQ--A-SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       152 ~~~i~~~d~~~~-~~~~~~~~~~~--~-~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      |. |++||+|.. .+....+..|.  + ..+++..+++.+ .+++|+. +.|+||++....... ....+.........+
T Consensus      1279 G~-I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~-~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1279 GD-IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNI-IKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             Ce-EEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcc-cccCcccccCcCCCc
Confidence            99 999999984 33233344333  3 589999999985 8999988 999999997654221 112233333445677


Q ss_pred             eEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          228 EQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .+++|||....+++++.|+.|.||.
T Consensus      1355 scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             ceeeecchhHhhhhccCCceEEEee
Confidence            9999999987777888899999885

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=1.3e-19  Score=143.14  Aligned_cols=200  Identities=21%  Similarity=0.386  Sum_probs=153.9

Q ss_pred             CCCCCceEEeecC--cEEEEEccCC---ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558            1 ECQKPDLLATSSD--FLRVWRISDE---DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE   75 (253)
Q Consensus         1 sp~~~~~l~~~~~--~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   75 (253)
                      +|-+.+.||+++|  .|++|.+..+   +....+...+.+|.     ..|+++.|+|-..+.|++++.|-+|++||+.++
T Consensus       636 dPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~-----eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~  710 (1012)
T KOG1445|consen  636 DPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG-----EKITSLRFHPLAADVLAVASYDSTIELWDLANA  710 (1012)
T ss_pred             CCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc-----ceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence            4778888888886  9999999764   23356677888998     899999999888899999999999999999999


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC-CCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD-TPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      +....+.+|++.|.+++|+ +|+.+++.+.||+|++|+-++...  .+++..+.. ..-..+.|.- ++.++++.+.|..
T Consensus       711 ~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  711 KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKS  787 (1012)
T ss_pred             hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEe-cCcEEEEeccccc
Confidence            9999999999999999999 999999999999999999998763  333332221 2445567777 8899988887653


Q ss_pred             ---eEEEEECCCCC-CCeeeecccc-cceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          154 ---KVVVLDIRFPT-LPVVELQRHQ-ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       154 ---~i~~~d~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                         .|.+||..+.. .++....-.. ..+.--.+.+|...+|++|-.|..|.+|.+-..+
T Consensus       788 SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  788 SERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             chhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence               47888877644 2333222111 1122234566765678899999999999987644

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.83  E-value=3.9e-20  Score=149.82  Aligned_cols=225  Identities=20%  Similarity=0.306  Sum_probs=168.0

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ..|.++++|+|  .|+||..++.    .+...++||.     +.|+.++.+ .+..++++++.|..|++|.+.++.++..
T Consensus       200 rtg~~Iitgsdd~lvKiwS~et~----~~lAs~rGhs-----~ditdlavs-~~n~~iaaaS~D~vIrvWrl~~~~pvsv  269 (1113)
T KOG0644|consen  200 RTGRYIITGSDDRLVKIWSMETA----RCLASCRGHS-----GDITDLAVS-SNNTMIAAASNDKVIRVWRLPDGAPVSV  269 (1113)
T ss_pred             cccceEeecCccceeeeeeccch----hhhccCCCCc-----cccchhccc-hhhhhhhhcccCceEEEEecCCCchHHH
Confidence            35789999997  9999999887    8999999999     899999998 8888999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee---------------eec------------cCCCCCCe
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI---------------IYE------------SSEPDTPL  132 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------~~~------------~~~~~~~i  132 (253)
                      +++|++.|++++|+ -.    +.+.||++++||.+-.-....               +..            .....-..
T Consensus       270 LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~  345 (1113)
T KOG0644|consen  270 LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF  345 (1113)
T ss_pred             HhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence            99999999999998 32    778999999999981110000               000            00000112


Q ss_pred             eEEEeeCCCCCEEEEEE-----------eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558          133 VRLGWNKQDPRYMATII-----------MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI  201 (253)
Q Consensus       133 ~~~~~~~~~~~~l~~~~-----------~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  201 (253)
                      -+++|.. ....+++.+           .+-. +++|++.++.. .+.+.+|...+..+.++|.+++...+++.||...|
T Consensus       346 ~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~i  422 (1113)
T KOG0644|consen  346 EQLAWRS-NLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTII  422 (1113)
T ss_pred             hHhhhhc-cceEEEeccccccccceeeeeeeE-eeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEe
Confidence            2233332 222222222           2333 78888888764 77888899999999999999877789999999999


Q ss_pred             EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      ||+..+....      ....+ ...+..-+|+++|+.++....-|.+.|+
T Consensus       423 wdi~eg~pik------~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  423 WDIWEGIPIK------HYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             eecccCCcce------eeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence            9998876443      23344 4566678899999877666666666664

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=5.3e-17  Score=130.41  Aligned_cols=219  Identities=20%  Similarity=0.340  Sum_probs=167.5

Q ss_pred             cEEEEEccC-CccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCceeeeeeecccccEEEE
Q 035558           14 FLRVWRISD-EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAVDTQLIAHDKEVYDI   91 (253)
Q Consensus        14 ~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~   91 (253)
                      .+++|+... .    .....+..|.     ..|..++|+ +++..+++++. |+.+++|+...+..+..+.+|...|.++
T Consensus       135 ~~~~~~~~~~~----~~~~~~~~~~-----~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  204 (466)
T COG2319         135 TVKLWDLSTPG----KLIRTLEGHS-----ESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL  204 (466)
T ss_pred             cEEEEEecCCC----eEEEEEecCc-----ccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence            999999987 4    6778888898     889999999 77878888885 9999999999888888888899999999


Q ss_pred             Eec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee
Q 035558           92 AWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE  169 (253)
Q Consensus        92 ~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~  169 (253)
                      +|+ ++. .+++++.|+.|++||...+.....  ....+.... ...|+| ++.++++++.++. +++|+++........
T Consensus       205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~-~~~~~~~~~~~~~~~  279 (466)
T COG2319         205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSP-DGSLLASGSSDGT-IRLWDLRSSSSLLRT  279 (466)
T ss_pred             EEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECC-CCCEEEEecCCCc-EEEeeecCCCcEEEE
Confidence            999 776 555669999999998885553221  233333333 227888 6688888999998 999999876643444


Q ss_pred             ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCCcE
Q 035558          170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFSTKL  248 (253)
Q Consensus       170 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i  248 (253)
                      +..|...+.++.|.|++ ..+++++.|+.+.+|+........     ......|...+..+.|.+++..++.+ ..++.+
T Consensus       280 ~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         280 LSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLS-----SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             EecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEE-----EeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence            46788899999999977 477778888999999888776443     01124677789999994332344444 577788


Q ss_pred             EEEEC
Q 035558          249 QILRV  253 (253)
Q Consensus       249 ~vw~l  253 (253)
                      .+|++
T Consensus       354 ~~~~~  358 (466)
T COG2319         354 RLWDL  358 (466)
T ss_pred             Eeeec
Confidence            88764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=2.3e-18  Score=125.58  Aligned_cols=206  Identities=14%  Similarity=0.207  Sum_probs=160.2

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      .+|+|.+|+ ++...+|.+..+..|.||.....+   ..++++.|...|+.+.|. ..+.|++|+.|..-++|....+..
T Consensus        11 ~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   11 EPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             Cceeeeeec-CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            789999999 999999999999999999887654   677888999999999999 999999999999999999965544


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC---CeeeecccccceeEEEEecCCCCeEEEecC
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL---PVVELQRHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      .+.......++...+++.|+| .++.||+|+.... |.+|-++....   ..+.-+.+...|++++|+|++ -+|++|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~-isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs~  166 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSP-KENKFAVGSGARL-ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGST  166 (361)
T ss_pred             eccceeEEEeccceeeEeecC-cCceEEeccCccE-EEEEEEecccceehhhhhCCccccceeeeeccCCc-ceeccccc
Confidence            444444445666899999999 9999999988776 88888765431   123344567889999999998 59999999


Q ss_pred             CCcEEEEeccCCC---CCCCCCCC--------CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          196 DSQALIWDLSSMG---QPVEGGLD--------PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       196 dg~i~iwd~~~~~---~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |+..+||..--..   +|......        ........+.+.++.|+|+|..+.-.+.|..+.+-+
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            9999999753221   11100000        111224578899999999999888888888876643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=3.1e-19  Score=133.71  Aligned_cols=195  Identities=17%  Similarity=0.259  Sum_probs=150.2

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---------VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD  112 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d  112 (253)
                      .+|.++.|.+...+.+++|+.|..|++|.++.+.         ....+..|...|+.+.|+ ++++|++|+.+|.|.+|-
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            6899999995455599999999999999887543         344566899999999999 999999999999999997


Q ss_pred             cC--------C-----CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeE
Q 035558          113 LR--------D-----KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNA  179 (253)
Q Consensus       113 ~~--------~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~  179 (253)
                      ..        +     .+..........|...|+.++|+| +++++++++.|+. +++||+..+.. ...+..|...+..
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns-~~l~Dv~~G~l-~~~~~dh~~yvqg  170 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNS-VRLWDVHAGQL-LAILDDHEHYVQG  170 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccce-EEEEEecccee-Eeeccccccccce
Confidence            76        2     112233334455777999999999 9999999999998 99999999775 7888899999999


Q ss_pred             EEEecCCCCeEEEecCCCcEEEEeccCCCCCC------------CCCCCCeeeccC----CCceeEEEEcCCCCceEE
Q 035558          180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPV------------EGGLDPILAYTA----GAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~  241 (253)
                      ++|.|-+ +++++-+.|...+.+++.......            .+.+......-|    ..-...++|+|+|..+++
T Consensus       171 vawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt  247 (434)
T KOG1009|consen  171 VAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT  247 (434)
T ss_pred             eecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence            9999998 799999999888887776543211            000111111112    234567899999986663

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=5.6e-20  Score=139.92  Aligned_cols=219  Identities=16%  Similarity=0.125  Sum_probs=177.4

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .+|+.|+.++.  .|-.+|..+.    ++...+...      ..|.++.|- .+.+++|++ ....++|||-. |..++.
T Consensus       139 rnGrhlllgGrKGHlAa~Dw~t~----~L~~Ei~v~------Etv~Dv~~L-Hneq~~AVA-QK~y~yvYD~~-GtElHC  205 (545)
T KOG1272|consen  139 RNGRHLLLGGRKGHLAAFDWVTK----KLHFEINVM------ETVRDVTFL-HNEQFFAVA-QKKYVYVYDNN-GTELHC  205 (545)
T ss_pred             CCccEEEecCCccceeeeecccc----eeeeeeehh------hhhhhhhhh-cchHHHHhh-hhceEEEecCC-CcEEee
Confidence            36777777764  9999999986    777666665      478999998 788888776 56789999986 666777


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ++.| ..|..+.|. ..-+|++++..|.++.-|+.+++.+..+.   ...+.+..|+-+| -...+-+|...|. |.+|.
T Consensus       206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP-~NaVih~GhsnGt-VSlWS  279 (545)
T KOG1272|consen  206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNP-YNAVIHLGHSNGT-VSLWS  279 (545)
T ss_pred             hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCC-ccceEEEcCCCce-EEecC
Confidence            7754 578889999 77789999999999999999998544443   3344788888899 6777888888887 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ... ++|+..+..|.++|.++++.++| +|++|.+.|..++|||++...++.       .... ..+...+++|..|  +
T Consensus       280 P~s-kePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~-------t~~t-p~~a~~ls~Sqkg--l  347 (545)
T KOG1272|consen  280 PNS-KEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLH-------TYRT-PHPASNLSLSQKG--L  347 (545)
T ss_pred             CCC-cchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccccc-------eeec-CCCcccccccccc--c
Confidence            887 45788899999999999999999 799999999999999999987554       3332 4567788888765  7


Q ss_pred             EEEEcCCcEEEEE
Q 035558          240 VAIAFSTKLQILR  252 (253)
Q Consensus       240 ~~~~~~~~i~vw~  252 (253)
                      +|++....+.||.
T Consensus       348 LA~~~G~~v~iw~  360 (545)
T KOG1272|consen  348 LALSYGDHVQIWK  360 (545)
T ss_pred             eeeecCCeeeeeh
Confidence            8899999999995

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=9.1e-17  Score=129.03  Aligned_cols=227  Identities=20%  Similarity=0.356  Sum_probs=172.2

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccc-eeeeecCCCCccccCCeeEEEe-cCCCCC-EEEEEeC-CCeEEEEeccC-ce
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVE-LKSLLNGNKNSEYCGPLTSFDW-NEAEPR-RIGTSSI-DTTCTIWDIER-EA   76 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-~l~~~~~-dg~i~vwd~~~-~~   76 (253)
                      .+..++.++ + .+.+|+....    . ....+..+..    ..+..+.+ + +++. .++..+. |+.+.+|+... ..
T Consensus        76 ~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~  146 (466)
T COG2319          76 DGELLLSGSSDGTIKLWDLDNG----EKLIKSLEGLHD----SSVSKLALSS-PDGNSILLASSSLDGTVKLWDLSTPGK  146 (466)
T ss_pred             CCcEEEEecCCCcEEEEEcCCC----ceeEEEEeccCC----CceeeEEEEC-CCcceEEeccCCCCccEEEEEecCCCe
Confidence            445555555 6 9999999885    3 5566665431    25666666 6 5565 5555444 89999999998 77


Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC-EEEEEEeCCC
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR-YMATIIMDSA  153 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~  153 (253)
                      ....+..|...|..++|+ ++..+++++. |+.+++|++........+   ..+...+.+++|+| ++. .+++++.++.
T Consensus       147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~~~~~~~~d~~  222 (466)
T COG2319         147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL---AGHTDPVSSLAFSP-DGGLLIASGSSDGT  222 (466)
T ss_pred             EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee---ccCCCceEEEEEcC-CcceEEEEecCCCc
Confidence            788888999999999999 8878888885 999999999985533333   34677999999998 676 5555577887


Q ss_pred             eEEEEECCCCCCCee-eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          154 KVVVLDIRFPTLPVV-ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                       |++||.+.... .. .+..|.... ...|+|++ .++++++.|+.+++|++.......      .....|...+.++.|
T Consensus       223 -i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~  292 (466)
T COG2319         223 -IRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLL------RTLSGHSSSVLSVAF  292 (466)
T ss_pred             -EEEEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEE------EEEecCCccEEEEEE
Confidence             99998885442 44 577787775 44899998 688899999999999999876521      122678999999999


Q ss_pred             cCCCCceEEEEcCCcEEEEEC
Q 035558          233 SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|++..+++++.|+.+++|++
T Consensus       293 ~~~~~~~~~~~~d~~~~~~~~  313 (466)
T COG2319         293 SPDGKLLASGSSDGTVRLWDL  313 (466)
T ss_pred             CCCCCEEEEeeCCCcEEEEEc
Confidence            998887888888888899863

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=2.3e-16  Score=117.25  Aligned_cols=175  Identities=16%  Similarity=0.224  Sum_probs=136.0

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec---ccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA---HDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~   90 (253)
                      .+++.++...    ..+..+.-.      .+|.++.++   .++|++.-.+ .|+|||+++.++++++..   +...+.+
T Consensus        69 ~Lkv~~~Kk~----~~ICe~~fp------t~IL~VrmN---r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~A  134 (391)
T KOG2110|consen   69 KLKVVHFKKK----TTICEIFFP------TSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCA  134 (391)
T ss_pred             eEEEEEcccC----ceEEEEecC------CceEEEEEc---cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEe
Confidence            5777777654    333333322      579999987   5667776655 499999999998887753   4556777


Q ss_pred             EEec-CCCeEEEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe
Q 035558           91 IAWG-GVGVFASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV  167 (253)
Q Consensus        91 ~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~  167 (253)
                      ++.+ .+.+++.-+  ..|.|.+||..+-+....+   ..|++.+.+++|++ +|.+||+++..|+.|+|+.+.++++ +
T Consensus       135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I---~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~k-l  209 (391)
T KOG2110|consen  135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI---NAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQK-L  209 (391)
T ss_pred             eccCCCCceEEecCCCCCceEEEEEcccceeeeEE---EecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccE-e
Confidence            7777 667777533  4688999999988744444   47888999999999 9999999999999999999988775 7


Q ss_pred             eeeccc--ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          168 VELQRH--QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       168 ~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .+++..  ...|.+++|+|++ ++|++.|..++|.+|.+....
T Consensus       210 ~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  210 YEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence            777643  3468999999999 699999999999999987654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.3e-17  Score=134.49  Aligned_cols=230  Identities=14%  Similarity=0.213  Sum_probs=166.3

Q ss_pred             CCCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCC--CEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEP--RRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +...+++..++.|.||...++    .++..+.+|.     .+++.+.+.|...  .++.+++.||.|++||...+.++.+
T Consensus        27 D~k~l~~~~~~~V~VyS~~Tg----~~i~~l~~~~-----a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt   97 (792)
T KOG1963|consen   27 DAKFLFLCTGNFVKVYSTATG----ECITSLEDHT-----APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT   97 (792)
T ss_pred             CCcEEEEeeCCEEEEEecchH----hhhhhccccc-----CccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence            344444444459999999998    8888999999     8999999986554  5677999999999999998876655


Q ss_pred             eecccccEEEE-----------------------------------------------------------EecCCCeEEE
Q 035558           81 LIAHDKEVYDI-----------------------------------------------------------AWGGVGVFAS  101 (253)
Q Consensus        81 ~~~~~~~v~~~-----------------------------------------------------------~~~~~~~l~~  101 (253)
                      +..+ .++.++                                                           .++....+..
T Consensus        98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~  176 (792)
T KOG1963|consen   98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG  176 (792)
T ss_pred             EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence            4321 111111                                                           1110111112


Q ss_pred             EeCCCcEEEEEcCCCCCeeee-eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC---CCCCeeeecccccce
Q 035558          102 VSADGSVRVFDLRDKEHSTII-YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF---PTLPVVELQRHQASV  177 (253)
Q Consensus       102 ~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~i  177 (253)
                      ...+..+.+|+..+....... .....|.-.+++.+++| +++++|++..||+ |.+|.--.   .......+.-|...|
T Consensus       177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGr-I~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGR-ILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             EEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCc-EEEEeccccccccccceEEEeccccc
Confidence            222344555655553311111 11123444689999999 9999999999999 99995433   223356778899999


Q ss_pred             eEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++++|+++| .+|++|+..|.+.+|.+.++++        ..+..-+++|..+.++|++.....+..|+.|.+.++
T Consensus       255 ~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k--------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  255 NSLSFSSDG-AYLLSGGREGVLVLWQLETGKK--------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             ceeEEecCC-ceEeecccceEEEEEeecCCCc--------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            999999999 5999999999999999999873        266677899999999999998888899999988753

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5.5e-17  Score=114.43  Aligned_cols=228  Identities=16%  Similarity=0.209  Sum_probs=152.4

Q ss_pred             ceEEeecC-cEEEEEccCCccc--cceeeeecC--CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            6 DLLATSSD-FLRVWRISDEDRR--VELKSLLNG--NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         6 ~~l~~~~~-~v~iw~~~~~~~~--~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++|.++++ .|+-|..++..+.  .+....++.  |......-.|+++...|..+..|. ++.|+.++-||+++++....
T Consensus        73 ~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~  151 (325)
T KOG0649|consen   73 DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQRE  151 (325)
T ss_pred             hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEE
Confidence            46777787 9998887664221  122222221  221222246889999855555554 55799999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC-------CCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE-------PDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      +++|++.|.++.-. ....+++|++||++|+||.++.++...+.....       ....|.+++-   +...+++|+.. 
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgGp-  227 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGGP-  227 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCCC-
Confidence            99999999999986 777899999999999999999998776654322       2235666665   45677766544 


Q ss_pred             CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      . +.+|.++..+ +...+. -..++..+.|..+   .++++++.+.+.-|.+..--+.        .........++..|
T Consensus       228 ~-lslwhLrsse-~t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gvl~a--------~ip~~s~~c~s~s~  293 (325)
T KOG0649|consen  228 K-LSLWHLRSSE-STCVFP-IPARVHLVDFVDD---CVLIGGEGNHVQSYTLNGVLQA--------NIPVESTACYSASW  293 (325)
T ss_pred             c-eeEEeccCCC-ceEEEe-cccceeEeeeecc---eEEEeccccceeeeeeccEEEE--------eccCCccceeeecc
Confidence            3 9999999865 344443 3456777888754   5778888889999977652211        11222334555555


Q ss_pred             cCCCCceE-EEEcCCcEEEEE
Q 035558          233 SSSQPDWV-AIAFSTKLQILR  252 (253)
Q Consensus       233 ~~~~~~~~-~~~~~~~i~vw~  252 (253)
                      +..--.++ +++..+.+.|++
T Consensus       294 ~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  294 QTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             cCCceEEEEecccceeeeeee
Confidence            43322244 567777777763

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=4.9e-18  Score=131.84  Aligned_cols=206  Identities=14%  Similarity=0.222  Sum_probs=155.8

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +..++++++| .+.+.+-..     +..+.+.+|.     +.+.+-.|+ ++|.-|+++++||.|++|... |....++.
T Consensus        75 ~d~~~i~s~DGkf~il~k~~-----rVE~sv~AH~-----~A~~~gRW~-~dGtgLlt~GEDG~iKiWSrs-GMLRStl~  142 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA-----RVERSISAHA-----AAISSGRWS-PDGAGLLTAGEDGVIKIWSRS-GMLRSTVV  142 (737)
T ss_pred             cceEEEEcCCceEEEecccc-----hhhhhhhhhh-----hhhhhcccC-CCCceeeeecCCceEEEEecc-chHHHHHh
Confidence            3446666667 888887665     7778888998     899999999 899999999999999999864 55555555


Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      ....+|+|++|. +.+.++.+- .+.+.+=-+....   .+..-..|.+-|.++.|+| ..+++++|+.|-. .++||..
T Consensus       143 Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~k-fKvWD~~  216 (737)
T KOG1524|consen  143 QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANS---KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFR-FKIWDAQ  216 (737)
T ss_pred             hcCceeEEEEECCCCCceEEec-CCeEEEeeccccc---ceeEEeccCcEEEEeecCc-cccceeecCCcee-EEeeccc
Confidence            567899999999 555555443 3456665555443   2233347888999999999 8999999999998 9999986


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      .  .++..-..|+.+|++++|+|+.  .++.+|. +++|      .+            ....+.|..++||+||..+.+
T Consensus       217 G--~~Lf~S~~~ey~ITSva~npd~--~~~v~S~-nt~R------~~------------~p~~GSifnlsWS~DGTQ~a~  273 (737)
T KOG1524|consen  217 G--ANLFTSAAEEYAITSVAFNPEK--DYLLWSY-NTAR------FS------------SPRVGSIFNLSWSADGTQATC  273 (737)
T ss_pred             C--cccccCChhccceeeeeecccc--ceeeeee-eeee------ec------------CCCccceEEEEEcCCCceeec
Confidence            4  3477777899999999999993  5666653 3343      11            123578999999999998877


Q ss_pred             EEcCCcEEE
Q 035558          242 IAFSTKLQI  250 (253)
Q Consensus       242 ~~~~~~i~v  250 (253)
                      ++..|.+.+
T Consensus       274 gt~~G~v~~  282 (737)
T KOG1524|consen  274 GTSTGQLIV  282 (737)
T ss_pred             cccCceEEE
Confidence            777776643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=3.8e-16  Score=122.19  Aligned_cols=229  Identities=12%  Similarity=0.116  Sum_probs=144.2

Q ss_pred             ecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccC-cee--eeeeeccc
Q 035558           11 SSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIER-EAV--DTQLIAHD   85 (253)
Q Consensus        11 ~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~--~~~~~~~~   85 (253)
                      +.+ .|++|++... ..++.+..+...      .....++++ +++++|++++ .++.|.+|++.. ++.  ..... ..
T Consensus         9 ~~~~~I~~~~~~~~-g~l~~~~~~~~~------~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~   79 (330)
T PRK11028          9 PESQQIHVWNLNHE-GALTLLQVVDVP------GQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LP   79 (330)
T ss_pred             CCCCCEEEEEECCC-CceeeeeEEecC------CCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CC
Confidence            345 9999999643 334455555432      345678999 7888876654 578899999863 332  22222 23


Q ss_pred             ccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558           86 KEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus        86 ~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      .....++++ +++.+++++. ++.|.+|++.+.... ....... .......++++| +++++++++.....|.+||+.+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECC
Confidence            456789999 8888877764 889999999753211 1121111 122567788999 8888877776655599999976


Q ss_pred             CCCCe------eeecccccceeEEEEecCCCCeEEEecC-CCcEEEEeccCCCCCCCCCCCCeeec----cCCCceeEEE
Q 035558          163 PTLPV------VELQRHQASVNAIAWAPHSSCHICTAGD-DSQALIWDLSSMGQPVEGGLDPILAY----TAGAEIEQLQ  231 (253)
Q Consensus       163 ~~~~~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~v~~~~  231 (253)
                      .....      .... .......++|+|++ ++++++.. +++|.+|++......... .......    .+......+.
T Consensus       158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIEC-VQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             CCcccccCCCceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEE-EEEEecCCCcCCCCccceeEE
Confidence            33211      1111 12346789999999 57776665 999999999743211100 0000000    1122344689


Q ss_pred             EcCCCCceEEEE-cCCcEEEEEC
Q 035558          232 WSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       232 ~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      ++|++++++++. .++.|.+|++
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEE
Confidence            999999777765 4688999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=4.4e-16  Score=121.86  Aligned_cols=231  Identities=12%  Similarity=0.107  Sum_probs=145.3

Q ss_pred             CCceEEee-c-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccCce---
Q 035558            4 KPDLLATS-S-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIEREA---   76 (253)
Q Consensus         4 ~~~~l~~~-~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~---   76 (253)
                      ++++|.++ . + .|.+|+++.. ..+....... ..     .....++|+ ++++++++++ .++.|.+|++++..   
T Consensus        45 d~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~-~~-----~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~  116 (330)
T PRK11028         45 DKRHLYVGVRPEFRVLSYRIADD-GALTFAAESP-LP-----GSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPV  116 (330)
T ss_pred             CCCEEEEEECCCCcEEEEEECCC-CceEEeeeec-CC-----CCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence            45555444 3 3 8999999732 2222222222 11     345689999 7888877765 47899999996432   


Q ss_pred             -eeeeeecccccEEEEEec-CCCeEEE-EeCCCcEEEEEcCCCCCeee----eeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           77 -VDTQLIAHDKEVYDIAWG-GVGVFAS-VSADGSVRVFDLRDKEHSTI----IYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        77 -~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                       .+..+. +......++++ +++++++ ...++.|.+||+.+......    .... ........++|+| ++++++++.
T Consensus       117 ~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p-dg~~lyv~~  193 (330)
T PRK11028        117 APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP-NQQYAYCVN  193 (330)
T ss_pred             Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC-CCCEEEEEe
Confidence             222222 23346778889 8877755 45579999999987432211    0111 1123567899999 899988887


Q ss_pred             eCCCeEEEEECCCCCC---Ceeeeccc------ccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCee
Q 035558          150 MDSAKVVVLDIRFPTL---PVVELQRH------QASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~---~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      .....|.+||+.....   .+..+...      ......+.++|++ ++|+++. .++.|.+|++.......       .
T Consensus       194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~-------~  265 (330)
T PRK11028        194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVL-------S  265 (330)
T ss_pred             cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeE-------E
Confidence            7444599999974211   12222211      1123368899999 5777775 57999999997543221       1


Q ss_pred             eccC---CCceeEEEEcCCCCceEEEEc-CCcEEEEEC
Q 035558          220 AYTA---GAEIEQLQWSSSQPDWVAIAF-STKLQILRV  253 (253)
Q Consensus       220 ~~~~---~~~v~~~~~~~~~~~~~~~~~-~~~i~vw~l  253 (253)
                      ..++   ......++++|++++++++.. ++.|.+|++
T Consensus       266 ~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        266 FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            1211   235568999999998886664 889999964

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.78  E-value=9.3e-17  Score=117.28  Aligned_cols=226  Identities=17%  Similarity=0.240  Sum_probs=168.9

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec-cCce--e
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-EREA--V   77 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~--~   77 (253)
                      +++..+|.+-.  .|.||..... +.++...+++.|.     ..|+.++|+ +..+.|++++.|..-+||.. ..++  .
T Consensus        20 ~drt~iAv~~~~~evhiy~~~~~-~~w~~~htls~Hd-----~~vtgvdWa-p~snrIvtcs~drnayVw~~~~~~~Wkp   92 (361)
T KOG1523|consen   20 SDRTQIAVSPNNHEVHIYSMLGA-DLWEPAHTLSEHD-----KIVTGVDWA-PKSNRIVTCSHDRNAYVWTQPSGGTWKP   92 (361)
T ss_pred             CCCceEEeccCCceEEEEEecCC-CCceeceehhhhC-----cceeEEeec-CCCCceeEccCCCCccccccCCCCeecc
Confidence            35556666664  9999998875 4477888888888     899999999 88889999999999999998 4444  4


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ...+..++...+++.|+ .++.|++|+....|.+|-++..+..-+-. ......+.|.+++|+| ++-++++|+.|+. .
T Consensus        93 tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k-~  170 (361)
T KOG1523|consen   93 TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGK-C  170 (361)
T ss_pred             ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcc-e
Confidence            44556688999999999 99999999999999999998776431111 1223455899999999 8899999999998 8


Q ss_pred             EEEECC-----CCC--------CC----eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558          156 VVLDIR-----FPT--------LP----VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI  218 (253)
Q Consensus       156 ~~~d~~-----~~~--------~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  218 (253)
                      +++..-     ...        .|    +.++....+.+..+.|+|+| ..|+-.+.|..+.+-|.....+..      .
T Consensus       171 rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v------~  243 (361)
T KOG1523|consen  171 RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERV------Q  243 (361)
T ss_pred             eEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhc------c
Confidence            888541     110        01    22333456789999999999 599999999999999988775322      1


Q ss_pred             eeccCCCceeEEEEcCCCCceEEEEcC
Q 035558          219 LAYTAGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                      ......-|..++.|-.+.. +++++.|
T Consensus       244 ~~~~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  244 SVATAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             chhhccCCceeeEeecCCc-eeecCCC
Confidence            2222236777888866543 5555555

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=6.7e-18  Score=127.17  Aligned_cols=191  Identities=18%  Similarity=0.237  Sum_probs=147.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .++..|++++ | ++|+|+....    ..+.....|.     ..|.++.|+ +++.+|++-+.| ..+||+.+++..++.
T Consensus       154 ~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~-----~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  154 GDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHH-----AEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             CCCCEeeeccccceEEEEecCcc----hhhhhhHhhc-----CccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhh
Confidence            3567888887 5 9999997665    6666777777     899999999 999999999999 899999999966655


Q ss_pred             ee--cccccEEEEEec-CC-----CeEEEEeCCCcEEEEEcCCCCCee--eeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           81 LI--AHDKEVYDIAWG-GV-----GVFASVSADGSVRVFDLRDKEHST--IIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        81 ~~--~~~~~v~~~~~~-~~-----~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ..  ........+.|. ++     ..++....-+.|+.||+.......  ...........|++++.++ +|++++.|+.
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~  301 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTM  301 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEecc
Confidence            43  233455677888 55     233444456678888776543211  1111222233899999999 9999999999


Q ss_pred             CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      +|. |.+++..+.+.....-+.|...|+.+.|+|+. +++++-+.|..+.|..+.-.
T Consensus       302 dGs-Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  302 DGS-VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             CCc-EEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence            999 99999988776555667899999999999998 79999999999999988763

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=8.7e-17  Score=129.72  Aligned_cols=205  Identities=14%  Similarity=0.112  Sum_probs=138.1

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCcee--eeeeecccccE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAV--DTQLIAHDKEV   88 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v   88 (253)
                      .|.+||.+..     ....+..|.     ..+.+.+|+ |+++.|+.++.+   ..|++||+.+++.  +..+.++   .
T Consensus       185 ~i~i~d~dg~-----~~~~lt~~~-----~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~  250 (429)
T PRK01742        185 EVRVADYDGF-----NQFIVNRSS-----QPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---N  250 (429)
T ss_pred             EEEEECCCCC-----CceEeccCC-----CccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---c
Confidence            8999998773     244566666     688999999 899988887643   3699999987753  3333333   3


Q ss_pred             EEEEec-CCCeEEEEe-CCCcEEEE--EcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCCeEEEEECCCC
Q 035558           89 YDIAWG-GVGVFASVS-ADGSVRVF--DLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSAKVVVLDIRFP  163 (253)
Q Consensus        89 ~~~~~~-~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~~i~~~d~~~~  163 (253)
                      ..++|+ +++.|+.++ .+|.+.||  |+.++.. ..+   ..+...+....|+| +++.|+.++. ++. ..+|++...
T Consensus       251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l---t~~~~~~~~~~wSp-DG~~i~f~s~~~g~-~~I~~~~~~  324 (429)
T PRK01742        251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL---TSGAGNNTEPSWSP-DGQSILFTSDRSGS-PQVYRMSAS  324 (429)
T ss_pred             CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee---ccCCCCcCCEEECC-CCCEEEEEECCCCC-ceEEEEECC
Confidence            468999 998888764 68876665  5555542 222   23344677899999 8887776654 555 888877543


Q ss_pred             CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ......+ .+..  ....|+|+| ++|+..+.++ +.+||+.++....       .....  ...+++|+|+++.++.++
T Consensus       325 ~~~~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~~-------lt~~~--~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        325 GGGASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTEV-------LSSTF--LDESPSISPNGIMIIYSS  390 (429)
T ss_pred             CCCeEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeEE-------ecCCC--CCCCceECCCCCEEEEEE
Confidence            3323333 3333  457899999 5787777655 5669998765321       11111  234678999999888888


Q ss_pred             cCCcEEEEE
Q 035558          244 FSTKLQILR  252 (253)
Q Consensus       244 ~~~~i~vw~  252 (253)
                      .++...+|.
T Consensus       391 ~~g~~~~l~  399 (429)
T PRK01742        391 TQGLGKVLQ  399 (429)
T ss_pred             cCCCceEEE
Confidence            888888775

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=5.3e-17  Score=121.37  Aligned_cols=194  Identities=19%  Similarity=0.208  Sum_probs=150.0

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC--CeEEEEeccCceeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID--TTCTIWDIEREAVDTQ   80 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~   80 (253)
                      ++.++.+.++ .+++|....++--......+..+      ..+..+.-+|....++++|+..  ..+++||++..+.+..
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~  188 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS  188 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecC------CceeeeccCCCCCceEecCchhcccceeeeecccceeeee
Confidence            4555555555 99999998542112334444444      3566777776677888889988  8899999998755443


Q ss_pred             eec-------c--cccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           81 LIA-------H--DKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        81 ~~~-------~--~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      -+.       -  .-.++++.|. .  ...|++++.-+.+++||.+.+..+  +......+.+++++...| .++++++|
T Consensus       189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--V~~fd~~E~~is~~~l~p-~gn~Iy~g  265 (412)
T KOG3881|consen  189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--VAQFDFLENPISSTGLTP-SGNFIYTG  265 (412)
T ss_pred             ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--eeEeccccCcceeeeecC-CCcEEEEe
Confidence            221       1  2245678888 4  789999999999999999977643  333334456999999999 99999999


Q ss_pred             EeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          149 IMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      ...+. +..+|++........+.+..+.|.++..+|.+ .+|++++-|..+||+|+.+.+
T Consensus       266 n~~g~-l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  266 NTKGQ-LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             cccch-hheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccch
Confidence            99998 99999999887566688899999999999998 599999999999999999844

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.77  E-value=3.5e-17  Score=127.00  Aligned_cols=212  Identities=15%  Similarity=0.206  Sum_probs=147.6

Q ss_pred             CceEEeec-CcEEEEEccCCcccccee--eeecCCCCccccCCeeEEEecC----CCCCEEEEEeCCCeEEEEeccCcee
Q 035558            5 PDLLATSS-DFLRVWRISDEDRRVELK--SLLNGNKNSEYCGPLTSFDWNE----AEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         5 ~~~l~~~~-~~v~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      |+.|+-.- +.+.+|+.....+..+.+  +.+++-       ..+|-+|+.    +.+--++.|-.-|.|.+.|....+.
T Consensus       135 gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt-------~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~  207 (636)
T KOG2394|consen  135 GDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGT-------SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV  207 (636)
T ss_pred             CCEEEEecCCeEEEEEccCcchhccchhhhcccCC-------CCceecccccccCCCCcceEEeeccCceEEecchhhHH
Confidence            44444443 488888887531111211  222222       223344421    4455677788889999988765332


Q ss_pred             eeeee----cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCC--------------Ceee-----------eeccC
Q 035558           78 DTQLI----AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKE--------------HSTI-----------IYESS  126 (253)
Q Consensus        78 ~~~~~----~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~-----------~~~~~  126 (253)
                      ...+.    ..+..++++.|-  +...|+.+-.+|.+.+||..-..              ...+           +....
T Consensus       208 sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~  287 (636)
T KOG2394|consen  208 SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH  287 (636)
T ss_pred             HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE
Confidence            22121    134789999999  77888899999999999874211              0000           00111


Q ss_pred             CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      ..++.|..++|+| ++++||+.+.||. ++|+|..+.+. +..++..-+...|++|+||| +|+++|++|.-|.||.+..
T Consensus       288 ~~~g~in~f~FS~-DG~~LA~VSqDGf-LRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  288 IGEGSINEFAFSP-DGKYLATVSQDGF-LRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             eccccccceeEcC-CCceEEEEecCce-EEEeeccHHHH-HHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEecc
Confidence            1345788999999 9999999999999 99999988653 55666667889999999999 7999999999999999998


Q ss_pred             CCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          207 MGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      .+...       .-.+|..+|..|+|.|
T Consensus       364 rRVVA-------RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  364 RRVVA-------RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEE-------eccccccceeeEeecc
Confidence            76543       6678999999999983

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=6.8e-19  Score=142.79  Aligned_cols=203  Identities=17%  Similarity=0.232  Sum_probs=152.0

Q ss_pred             cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558           27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD  105 (253)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  105 (253)
                      .+.++.+.+|.     ..|.|+.|. ..+.++++|+.|..++||..+++.+....++|.+.|++++.+ +...+++++.|
T Consensus       180 mk~ikrLlgH~-----naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D  253 (1113)
T KOG0644|consen  180 MKNIKRLLGHR-----NAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND  253 (1113)
T ss_pred             HHHHHHHHhhh-----hheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC
Confidence            35566678888     899999999 899999999999999999999999999999999999999999 88899999999


Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee---e-cccccceeEEE
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE---L-QRHQASVNAIA  181 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---~-~~~~~~i~~~~  181 (253)
                      ..|++|.+..+.++.++   .+|++.|++++|+|..     +.+.||. +++||.+-... ...   + ......+.++.
T Consensus       254 ~vIrvWrl~~~~pvsvL---rghtgavtaiafsP~~-----sss~dgt-~~~wd~r~~~~-~y~prp~~~~~~~~~~s~~  323 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPVSVL---RGHTGAVTAIAFSPRA-----SSSDDGT-CRIWDARLEPR-IYVPRPLKFTEKDLVDSIL  323 (1113)
T ss_pred             ceEEEEecCCCchHHHH---hccccceeeeccCccc-----cCCCCCc-eEecccccccc-ccCCCCCCcccccceeeee
Confidence            99999999998854444   5788899999999932     5566777 99999982110 000   0 00112233333


Q ss_pred             EecCCCCeEEEec-------------------------------------CCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          182 WAPHSSCHICTAG-------------------------------------DDSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       182 ~~~~~~~~l~~~~-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      |..++ .-++|++                                     .+-.+.+|++.++...       ....+|.
T Consensus       324 ~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-------H~l~ghs  395 (1113)
T KOG0644|consen  324 FENNG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-------HNLMGHS  395 (1113)
T ss_pred             ccccc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhh-------hhhcccc
Confidence            33333 1333333                                     3444555665555433       2566789


Q ss_pred             CceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          225 AEIEQLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      ..+..+.++|.++.+. +++.|+...||++
T Consensus       396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCCCceEeeec
Confidence            9999999999988665 8999999999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5.4e-16  Score=126.59  Aligned_cols=240  Identities=15%  Similarity=0.191  Sum_probs=161.5

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++++++|++. + .|.+|.--..+........+.=|.     .+|++++|+ ++|.+|++|+..|.+-+|.+++++ .+-
T Consensus       215 pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~-----~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqf  287 (792)
T KOG1963|consen  215 PNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH-----DEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQF  287 (792)
T ss_pred             cccceEEEeccCCcEEEEeccccccccccceEEEecc-----cccceeEEe-cCCceEeecccceEEEEEeecCCC-ccc
Confidence            5677888887 4 999997544112223345566676     799999999 999999999999999999999988 555


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--------CCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS--------EPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      ++.-.++|..+.++ ++++.+....|..|.+....+......+....        ...+-.+.++++| ..+.++..+..
T Consensus       288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~  366 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHP  366 (792)
T ss_pred             ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCC
Confidence            66678899999999 99999999999999998775443222221111        1122344455555 44444444444


Q ss_pred             CCeEEEEECCCCCC------------------------------------------------------------------
Q 035558          152 SAKVVVLDIRFPTL------------------------------------------------------------------  165 (253)
Q Consensus       152 ~~~i~~~d~~~~~~------------------------------------------------------------------  165 (253)
                      +. |.+||+.+...                                                                  
T Consensus       367 g~-vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~  445 (792)
T KOG1963|consen  367 GH-VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI  445 (792)
T ss_pred             ce-EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence            44 55555533211                                                                  


Q ss_pred             -CeeeecccccceeEEEEecCCCC-eEEEecCCCcEEEEeccCCCCCCCCCCC---CeeeccCCCceeEEEEcCCCCceE
Q 035558          166 -PVVELQRHQASVNAIAWAPHSSC-HICTAGDDSQALIWDLSSMGQPVEGGLD---PILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       166 -~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                       .......|...+...++.+.-.. .+++++.||.++||-+...+........   .....-|..++++++|+.+|. ++
T Consensus       446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-ll  524 (792)
T KOG1963|consen  446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LL  524 (792)
T ss_pred             EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EE
Confidence             01112345555555555443223 7899999999999999655433311111   011112789999999999996 99


Q ss_pred             EEEcCCcEEEEE
Q 035558          241 AIAFSTKLQILR  252 (253)
Q Consensus       241 ~~~~~~~i~vw~  252 (253)
                      +++.++.|.+|+
T Consensus       525 a~s~~~~Itiwd  536 (792)
T KOG1963|consen  525 AVSFDDTITIWD  536 (792)
T ss_pred             EEecCCEEEEec
Confidence            999999999997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=2.6e-16  Score=117.72  Aligned_cols=198  Identities=12%  Similarity=0.124  Sum_probs=156.0

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----eeeeeecccccEEEEEec--CCCeEEEEeCC--CcEEEEEcC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----VDTQLIAHDKEVYDIAWG--GVGVFASVSAD--GSVRVFDLR  114 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d--g~i~i~d~~  114 (253)
                      .+|..+...   ...|++|-.+|.+.+|..+.+.    .+..+..+ ..+..|.-+  ....+++|+..  ..+.+||+.
T Consensus       106 ~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  106 KSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             ccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            566666653   4567788899999999988443    23333333 456667766  67788889999  889999999


Q ss_pred             CCCCeeeeeccC------CCCCCeeEEEeeCCC--CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558          115 DKEHSTIIYESS------EPDTPLVRLGWNKQD--PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS  186 (253)
Q Consensus       115 ~~~~~~~~~~~~------~~~~~i~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  186 (253)
                      +.+.+-.-...+      .-.-+++.+.|-| .  ...||+++.-+. +++||.+.+..|+..+.--+.+++++...|.+
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hq-vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g  259 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQ-VRLYDTRHQRRPVAQFDFLENPISSTGLTPSG  259 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEeccee-EEEecCcccCcceeEeccccCcceeeeecCCC
Confidence            874211111000      1122677888988 4  678999999988 99999999999999999889999999999999


Q ss_pred             CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                       +++++|..-|.+..||++.+....      ..+.+..+.|+++..+|..+.++++|-|..+||+++
T Consensus       260 -n~Iy~gn~~g~l~~FD~r~~kl~g------~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  260 -NFIYTGNTKGQLAKFDLRGGKLLG------CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             -cEEEEecccchhheecccCceeec------cccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence             699999999999999999988654      456778999999999999998999999999999985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=1.7e-16  Score=133.69  Aligned_cols=212  Identities=17%  Similarity=0.182  Sum_probs=150.5

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-------eeeeeecccccEEEEEec-CCCeE
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-------VDTQLIAHDKEVYDIAWG-GVGVF   99 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~-~~~~l   99 (253)
                      ..+..+..|.     ..+..++.+++++.++++|+.||+|++|+.+...       ...++......+.++.+. .++.+
T Consensus      1039 ~lVAhL~Ehs-----~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1039 ILVAHLHEHS-----SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             eEeehhhhcc-----ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            5666777777     7888999997777999999999999999986422       222333346788899998 99999


Q ss_pred             EEEeCCCcEEEEEcCCCCCee-----eeeccCCCCCCeeEE-EeeCCCCC-EEEEEEeCCCeEEEEECCCCCCCee--ee
Q 035558          100 ASVSADGSVRVFDLRDKEHST-----IIYESSEPDTPLVRL-GWNKQDPR-YMATIIMDSAKVVVLDIRFPTLPVV--EL  170 (253)
Q Consensus       100 ~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~i~~~-~~~~~~~~-~l~~~~~~~~~i~~~d~~~~~~~~~--~~  170 (253)
                      |.++.||.|++.++...+...     .........+.+.+| +|...... .++.+...++ |..||+++... ..  +.
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~-iv~~D~r~~~~-~w~lk~ 1191 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR-IVSWDTRMRHD-AWRLKN 1191 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc-eEEecchhhhh-HHhhhc
Confidence            999999999999998732111     111112223344443 45543455 5666666666 99999998653 22  23


Q ss_pred             cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC---ceEE-EE-cC
Q 035558          171 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP---DWVA-IA-FS  245 (253)
Q Consensus       171 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~-~~-~~  245 (253)
                      ....+.|++++.+|.+ .++++|...|.+.+||++-.....      ....++..++..+..+|..+   ..++ +. ..
T Consensus      1192 ~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~------sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPIL------SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred             CccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceee------cccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence            3345789999999999 699999999999999999765322      34445668888888877654   3443 33 56


Q ss_pred             CcEEEEEC
Q 035558          246 TKLQILRV  253 (253)
Q Consensus       246 ~~i~vw~l  253 (253)
                      +.+.+|++
T Consensus      1265 nevs~wn~ 1272 (1431)
T KOG1240|consen 1265 NEVSTWNM 1272 (1431)
T ss_pred             Cceeeeec
Confidence            78999975

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1.5e-15  Score=110.97  Aligned_cols=229  Identities=14%  Similarity=0.152  Sum_probs=154.3

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCC------CeEEEEeccC
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSID------TTCTIWDIER   74 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d------g~i~vwd~~~   74 (253)
                      +|...++++.+ ..+||+.+.-    +.....+.+...   -.+..+-|-   .++++ .|+.+      ..|.|||-..
T Consensus        15 QD~ScFava~~~Gfriyn~~P~----ke~~~r~~~~~G---~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen   15 QDHSCFAVATDTGFRIYNCDPF----KESASRQFIDGG---FKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             cCCceEEEEecCceEEEecCch----hhhhhhccccCc---hhhhhHhhh---hceEEEecCCCCCCCCCceEEEEeccc
Confidence            45667788888 9999998753    322222222210   123333332   33443 33333      3799999666


Q ss_pred             ceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCC-CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           75 EAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRD-KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        75 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      .+++.++. ...+|.++.+. .+.+++.- ++.|.+|.+.. .+....+.....++ .+.+++=+. +..+||.-|...+
T Consensus        85 ~~~i~el~-f~~~I~~V~l~-r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk-GlC~~~~~~-~k~~LafPg~k~G  159 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLR-RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK-GLCSLCPTS-NKSLLAFPGFKTG  159 (346)
T ss_pred             CcEEEEEE-eccceeeEEEc-CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCC-ceEeecCCC-CceEEEcCCCccc
Confidence            66777665 57899999986 44454443 66899999984 44444444333343 344444333 4456666565555


Q ss_pred             eEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCCCc-EEEEeccCCCCCCCCCCCCeeecc-CCCceeEE
Q 035558          154 KVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ-ALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQL  230 (253)
Q Consensus       154 ~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~  230 (253)
                      .|.+-|+..... +-..+.+|...|.+++.+-+| .++||+|..|+ |||||..++....      ....+ ....|.++
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~------E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQ------ELRRGVDRADIYCI  232 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEee------eeecCCchheEEEE
Confidence            699999987553 357889999999999999999 69999998886 6899999988655      22222 36689999


Q ss_pred             EEcCCCCceEEEEcCCcEEEEEC
Q 035558          231 QWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|||+..++++++..++++|+.+
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEe
Confidence            99999997778888899999864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.8e-16  Score=116.70  Aligned_cols=185  Identities=14%  Similarity=0.265  Sum_probs=136.9

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCC-
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEH-  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-  118 (253)
                      ..+..++|+ +.-..++++..|-.|++||-.. +....++ .....|++++|-  ....|+.|+..| |.+|....... 
T Consensus        99 ~dlr~~aWh-qH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~  175 (445)
T KOG2139|consen   99 IDLRGVAWH-QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA  175 (445)
T ss_pred             cceeeEeec-hhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence            457789999 5666788899999999999876 4444444 345789999999  777888888776 89997653221 


Q ss_pred             ----------eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC
Q 035558          119 ----------STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC  188 (253)
Q Consensus       119 ----------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  188 (253)
                                ...+...++| .+|++|+|++ ++..+++++.+...|.+||..++.. +.......+.+.-+.|+|+++ 
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd-  251 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGD-  251 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCC-
Confidence                      1122334455 4999999999 8999999999888899999998653 222223356788899999994 


Q ss_pred             eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      +|+++.-|+..++|+....-...      ....+ .+.|....|+|.|+.++-
T Consensus       252 ~lfaAt~davfrlw~e~q~wt~e------rw~lg-sgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSWTKE------RWILG-SGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             EEEEecccceeeeehhcccceec------ceecc-CCceeeeeecCCCCEEEE
Confidence            99999999999999654432211      12233 348999999999997763

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.3e-16  Score=122.65  Aligned_cols=193  Identities=14%  Similarity=0.214  Sum_probs=145.8

Q ss_pred             eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558           46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE  124 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  124 (253)
                      ..++++.++..+++.|+ ...|+-++++.|+.+..+....+.++++..+ ...+|++|+.+|.|..||.+.......+..
T Consensus       137 RDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            35566655566666555 4578889999999999888777999999999 888999999999999999998875544432


Q ss_pred             cCC---CC-----CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC-eEEEecC
Q 035558          125 SSE---PD-----TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC-HICTAGD  195 (253)
Q Consensus       125 ~~~---~~-----~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~  195 (253)
                      ...   +.     ..|+++.|+. ++-.+++|..+|. +.|||+|..+..+..-....-+|..+.|.+.+.+ .+++ ..
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~-v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~D  292 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGS-VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MD  292 (703)
T ss_pred             ccccCCCccccccCcceEEEecC-CceeEEeeccCCc-EEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cc
Confidence            211   22     2599999997 7999999999999 9999999876433444445668999999886433 4444 44


Q ss_pred             CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558          196 DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI  250 (253)
Q Consensus       196 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v  250 (253)
                      ...++|||-.+++.        .........++.+++-|++..++++-.+..+..
T Consensus       293 k~~~kiWd~~~Gk~--------~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  293 KRILKIWDECTGKP--------MASIEPTSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             hHHhhhcccccCCc--------eeeccccCCcCceeeecCCceEEEecCCCccee
Confidence            67899999988773        244445566999999999887777777665544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.5e-15  Score=112.83  Aligned_cols=212  Identities=15%  Similarity=0.236  Sum_probs=143.1

Q ss_pred             cC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----ee--------e
Q 035558           12 SD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----AV--------D   78 (253)
Q Consensus        12 ~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~--------~   78 (253)
                      .| .|++|+-..     +....++....    ..|++++|-|-.+..|+.|...| |.+|.....    ..        .
T Consensus       118 nddvVriy~kss-----t~pt~Lks~sQ----rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~  187 (445)
T KOG2139|consen  118 NDDVVRIYDKSS-----TCPTKLKSVSQ----RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHL  187 (445)
T ss_pred             cCcEEEEeccCC-----CCCceecchhh----cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccch
Confidence            35 999999776     44444443332    57999999987788888888765 899976432    11        1


Q ss_pred             eee--ecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           79 TQL--IAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        79 ~~~--~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      +.+  ++| .+|++|+|+ ++..+++++. |..|.+||..++......   ....+.+.-+.|+| ++.+|.++.-|+. 
T Consensus       188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSP-dgd~lfaAt~dav-  261 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSP-DGDVLFAATCDAV-  261 (445)
T ss_pred             hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcC-CCCEEEEecccce-
Confidence            112  244 689999999 9999998875 677999999999865444   23334788999999 9999999999998 


Q ss_pred             EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC----CC----C-----eeec
Q 035558          155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG----LD----P-----ILAY  221 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~----~-----~~~~  221 (253)
                      .++|+.........-.. ..+.|...+|+|+|..+|++++..  -++|.+....+.....    ..    +     ....
T Consensus       262 frlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~  338 (445)
T KOG2139|consen  262 FRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTIC  338 (445)
T ss_pred             eeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhh
Confidence            99996655443222222 345899999999996566666644  4556554433221000    00    0     0000


Q ss_pred             c----CCCceeEEEEcCCCCceEEE
Q 035558          222 T----AGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       222 ~----~~~~v~~~~~~~~~~~~~~~  242 (253)
                      .    -.+++.+++|.|.|.++++.
T Consensus       339 ag~~l~cgeaq~lawDpsGeyLav~  363 (445)
T KOG2139|consen  339 AGQRLCCGEAQCLAWDPSGEYLAVI  363 (445)
T ss_pred             cCcccccCccceeeECCCCCEEEEE
Confidence            1    15678999999999866543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.74  E-value=7e-17  Score=128.69  Aligned_cols=189  Identities=13%  Similarity=0.156  Sum_probs=141.5

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      .|..++|- |+|..|+.+.. ..+.+||...|..++++++|++.|.+++|+ +|..|++|+.|..|.+|.-.-..   .+
T Consensus        14 ci~d~afk-PDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L   88 (1081)
T KOG1538|consen   14 CINDIAFK-PDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL   88 (1081)
T ss_pred             chheeEEC-CCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee
Confidence            68899999 88888877754 579999999999999999999999999999 99999999999999999765443   12


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                       . -.|...|.||.|+| -...+++++-..  .-+|......  +...+ ....+.+.+|..|| ++|+.|-.+|+|.+-
T Consensus        89 -k-YSH~D~IQCMsFNP-~~h~LasCsLsd--FglWS~~qK~--V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   89 -K-YSHNDAIQCMSFNP-ITHQLASCSLSD--FGLWSPEQKS--VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIR  159 (1081)
T ss_pred             -e-eccCCeeeEeecCc-hHHHhhhcchhh--ccccChhhhh--HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEee
Confidence             1 14566999999999 888888888765  6678765432  22222 24568899999999 799999999999987


Q ss_pred             eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-----ceEEEEcCCcEEEE
Q 035558          203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-----DWVAIAFSTKLQIL  251 (253)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~i~vw  251 (253)
                      +-.......     .....+.+++|.+++|+|...     .+..+..+.++.++
T Consensus       160 Nk~gEek~~-----I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy  208 (1081)
T KOG1538|consen  160 NKNGEEKVK-----IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY  208 (1081)
T ss_pred             cCCCCcceE-----EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence            543322211     112234688999999999743     22334444555444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=2.5e-17  Score=117.31  Aligned_cols=158  Identities=22%  Similarity=0.305  Sum_probs=121.4

Q ss_pred             CCeeEEEecCCCC--CEEEEEeCCCeEEEEeccCce----------eeeeeecccccEEEEEec-CCCeEEEEeCCCcEE
Q 035558           43 GPLTSFDWNEAEP--RRIGTSSIDTTCTIWDIEREA----------VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVR  109 (253)
Q Consensus        43 ~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~  109 (253)
                      +.+.+..+.-..+  -++++|.++|.+.+||+.++.          .......|..+|.++.|. .-+.=++|+.+..+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            5566666431222  356788899999999999873          333445789999999998 555557888888899


Q ss_pred             EEEcCCCCCeeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC
Q 035558          110 VFDLRDKEHSTIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC  188 (253)
Q Consensus       110 i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  188 (253)
                      +|.+.-......+. ...-.+-.+..+..-| +++.+|+++.|++ |++|..++.. |+..+..|.+.|++++|+|+. .
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~R-iRVyswrtl~-pLAVLkyHsagvn~vAfspd~-~  306 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHR-IRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDC-E  306 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCc-EEEEEeccCC-chhhhhhhhcceeEEEeCCCC-c
Confidence            99887542111111 1111122677888888 9999999999999 9999999976 699999999999999999998 4


Q ss_pred             eEEEecCCCcEEEEec
Q 035558          189 HICTAGDDSQALIWDL  204 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~  204 (253)
                      ++++++.|++|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            9999999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=2.4e-16  Score=122.65  Aligned_cols=175  Identities=12%  Similarity=0.205  Sum_probs=133.0

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLV  133 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~  133 (253)
                      ...++.++.||.+.+.+-. ++....+..|.+.+.+-.|+ +|.-|+++++||.|++|.-...-.    ......+.+|+
T Consensus        75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR----Stl~Q~~~~v~  149 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR----STVVQNEESIR  149 (737)
T ss_pred             cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----HHHhhcCceeE
Confidence            3567788899999887754 66777788999999999999 999999999999999997544321    11123344899


Q ss_pred             EEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC
Q 035558          134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG  213 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  213 (253)
                      |++|.|+..+.+.+. .+ . +.+=.+..... +...++|.+-|.++.|+|.. .++++|++|-..+|||.....     
T Consensus       150 c~~W~p~S~~vl~c~-g~-h-~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~-----  219 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQ-GG-H-ISIKPLAANSK-IIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN-----  219 (737)
T ss_pred             EEEECCCCCceEEec-CC-e-EEEeecccccc-eeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc-----
Confidence            999999544555443 22 2 77766765554 67788999999999999998 599999999999999976532     


Q ss_pred             CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558          214 GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ  249 (253)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~  249 (253)
                         ......|..+|++++|.|+ . +++.++-+.+|
T Consensus       220 ---Lf~S~~~ey~ITSva~npd-~-~~~v~S~nt~R  250 (737)
T KOG1524|consen  220 ---LFTSAAEEYAITSVAFNPE-K-DYLLWSYNTAR  250 (737)
T ss_pred             ---cccCChhccceeeeeeccc-c-ceeeeeeeeee
Confidence               1355678999999999999 4 44444444444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.73  E-value=1.5e-16  Score=123.64  Aligned_cols=159  Identities=21%  Similarity=0.331  Sum_probs=126.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--------------e--------------eeeeeecccccEEEEEec
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--------------A--------------VDTQLIAHDKEVYDIAWG   94 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--------------~--------------~~~~~~~~~~~v~~~~~~   94 (253)
                      ..|+++.|-|-+...++.+-.+|.+++||.+-.              .              ++..+.--++.|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            689999999777888888889999999976421              0              111122234578889999


Q ss_pred             -CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc
Q 035558           95 -GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH  173 (253)
Q Consensus        95 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~  173 (253)
                       |+++||+.+.||.+||||+.+.+....+....   +...|++|+| |+++|++|+.|+- |.||.+...+. +..-++|
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF---GGLLCvcWSP-DGKyIvtGGEDDL-VtVwSf~erRV-VARGqGH  373 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF---GGLLCVCWSP-DGKYIVTGGEDDL-VTVWSFEERRV-VARGQGH  373 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhhc---cceEEEEEcC-CccEEEecCCcce-EEEEEeccceE-EEecccc
Confidence             99999999999999999999887544443333   3899999999 9999999999998 99999987553 7788899


Q ss_pred             ccceeEEEEecC-----------------------------------C------------CCeEEEecCCCcEEEEeccC
Q 035558          174 QASVNAIAWAPH-----------------------------------S------------SCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       174 ~~~i~~~~~~~~-----------------------------------~------------~~~l~~~~~dg~i~iwd~~~  206 (253)
                      ...|..++|.|-                                   +            ...|.+.+.|-.+.+||+..
T Consensus       374 kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  374 KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence            999999999830                                   0            13577888999999999976


Q ss_pred             C
Q 035558          207 M  207 (253)
Q Consensus       207 ~  207 (253)
                      .
T Consensus       454 D  454 (636)
T KOG2394|consen  454 D  454 (636)
T ss_pred             h
Confidence            4

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=3e-14  Score=104.26  Aligned_cols=217  Identities=16%  Similarity=0.182  Sum_probs=149.0

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc-Cceeeeeeec--ccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQLIA--HDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~--~~~~v~~   90 (253)
                      .|-|||=...    +++.++.-.      .+|.++.+.   ...|++.- .+.|+||.+. ..+.+..+..  ......+
T Consensus        76 kviIWDD~k~----~~i~el~f~------~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~  141 (346)
T KOG2111|consen   76 KVIIWDDLKE----RCIIELSFN------SEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCS  141 (346)
T ss_pred             eEEEEecccC----cEEEEEEec------cceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEe
Confidence            7999994443    666666544      589999987   55677665 5789999987 4455554432  2233555


Q ss_pred             EEec-CCCeEEE-EeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCee
Q 035558           91 IAWG-GVGVFAS-VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV  168 (253)
Q Consensus        91 ~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  168 (253)
                      ++-. +..+|+. |-.-|.|++-|+...+.-. -.....|.+.|.|++.+. +|.++|+++..|+.|+|||..++.. +.
T Consensus       142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~-p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~-l~  218 (346)
T KOG2111|consen  142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA-PSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL-LQ  218 (346)
T ss_pred             ecCCCCceEEEcCCCccceEEEEEhhhcCcCC-ceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE-ee
Confidence            5544 5555554 3456999999998776421 122247788999999999 9999999999999999999999774 66


Q ss_pred             eecc--cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC--CC------CCCe---------eeccCCCceeE
Q 035558          169 ELQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE--GG------LDPI---------LAYTAGAEIEQ  229 (253)
Q Consensus       169 ~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~------~~~~---------~~~~~~~~v~~  229 (253)
                      +++.  ....|++|+|+|+. .+|+++|..|++.||.++.......  ..      ..|.         .+.-..++..-
T Consensus       219 E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~  297 (346)
T KOG2111|consen  219 ELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCI  297 (346)
T ss_pred             eeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEE
Confidence            6653  34579999999999 6999999999999999986442221  00      0000         00111345556


Q ss_pred             EEEcCCCCceEEEEcCCcE
Q 035558          230 LQWSSSQPDWVAIAFSTKL  248 (253)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i  248 (253)
                      ++|-.+...+++.+.|+.-
T Consensus       298 ~~fg~~~nsvi~i~~Dgsy  316 (346)
T KOG2111|consen  298 IAFGSETNTVIAICADGSY  316 (346)
T ss_pred             EEecCCCCeEEEEEeCCcE
Confidence            6777664457777777643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=7.9e-17  Score=125.56  Aligned_cols=215  Identities=11%  Similarity=0.053  Sum_probs=146.9

Q ss_pred             eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--------eeeeeeecccccEEEEEec-CCCeEE
Q 035558           30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--------AVDTQLIAHDKEVYDIAWG-GVGVFA  100 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~-~~~~l~  100 (253)
                      ..++..|.     +.|+.+.|+ +....|++++.||+|++|+++..        +++.++++|.++|.|+++. ++..++
T Consensus       287 k~tl~s~~-----d~ir~l~~~-~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y  360 (577)
T KOG0642|consen  287 KFTLRSHD-----DCIRALAFH-PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY  360 (577)
T ss_pred             eeeeecch-----hhhhhhhcC-CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence            34566666     789999998 77778999999999999999432        3778899999999999999 999999


Q ss_pred             EEeCCCcEEEEEcCCCC-------CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc
Q 035558          101 SVSADGSVRVFDLRDKE-------HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH  173 (253)
Q Consensus       101 ~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~  173 (253)
                      +|+.||+|+.|++....       .........+|...++.+++++ ....|++++.||+ ++.|+......+.......
T Consensus       361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgT-vr~w~~~~~~~~~f~~~~e  438 (577)
T KOG0642|consen  361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGT-VRLWEPTEESPCTFGEPKE  438 (577)
T ss_pred             eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCce-EEeeccCCcCccccCCccc
Confidence            99999999999775322       1122234457888999999999 8888999999999 9999987654322222222


Q ss_pred             ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .+...++.+-.......++...-+.--++++..................-...+..+.++|.....+++..+..|++++
T Consensus       439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD  517 (577)
T ss_pred             cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence            3344566665543222333223333333343333322100000000111235678899999998888999999999876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=2.9e-17  Score=125.37  Aligned_cols=218  Identities=13%  Similarity=0.176  Sum_probs=166.8

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +..++|++.. .++|||-..     ..+..++.|      ..|..+.|- |..-+|++++..|.++.-|+.+|+.+..+.
T Consensus       181 neq~~AVAQK~y~yvYD~~G-----tElHClk~~------~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~  248 (545)
T KOG1272|consen  181 NEQFFAVAQKKYVYVYDNNG-----TELHCLKRH------IRVARLEFL-PYHFLLVAASEAGFLKYQDVSTGKLVASIR  248 (545)
T ss_pred             chHHHHhhhhceEEEecCCC-----cEEeehhhc------Cchhhhccc-chhheeeecccCCceEEEeechhhhhHHHH
Confidence            5567888887 999999876     556666666      478999999 778889999999999999999999999998


Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .-.+.+..|+-+ -+..+-+|...|+|.+|.....++   +.....|.++|.++++++ +|.++++++.|.. ++|||+|
T Consensus       249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP---LvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~-~kIWDlR  323 (545)
T KOG1272|consen  249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP---LVKILCHRGPVSSIAVDR-GGRYMATTGLDRK-VKIWDLR  323 (545)
T ss_pred             ccCCccchhhcCCccceEEEcCCCceEEecCCCCcch---HHHHHhcCCCcceEEECC-CCcEEeecccccc-eeEeeec
Confidence            888889889888 778899999999999999887774   334446777999999999 9999999999999 9999999


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      +..+ +.++.. ..+...+++|..|   +++.+....+.||.=.....+  ....|........+|.++.|.|-.. ++.
T Consensus       324 ~~~q-l~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~--~~~~pYm~H~~~~~V~~l~FcP~ED-vLG  395 (545)
T KOG1272|consen  324 NFYQ-LHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSG--HGETPYMNHRCGGPVEDLRFCPYED-VLG  395 (545)
T ss_pred             cccc-cceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCCC--CCCcchhhhccCcccccceeccHHH-eee
Confidence            9775 444443 4466778888776   444455668999943221111  0112333344466999999999875 665


Q ss_pred             EEcCC
Q 035558          242 IAFST  246 (253)
Q Consensus       242 ~~~~~  246 (253)
                      .|..+
T Consensus       396 IGH~~  400 (545)
T KOG1272|consen  396 IGHAG  400 (545)
T ss_pred             ccccC
Confidence            44433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5.4e-17  Score=126.47  Aligned_cols=173  Identities=17%  Similarity=0.152  Sum_probs=130.6

Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC-EEEEEEeCCCe
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR-YMATIIMDSAK  154 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~  154 (253)
                      ..+.+.+|++-|.+++|+ +|.+|++|+.|-.+.|||.-..+....+  ..+|...|.++.|-|..++ ++++|..|.. 
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~-  118 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKL-  118 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcce-
Confidence            445678999999999999 9999999999999999999866644444  3477889999999997665 5556666666 


Q ss_pred             EEEEECCC---------CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC---eeecc
Q 035558          155 VVVLDIRF---------PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP---ILAYT  222 (253)
Q Consensus       155 i~~~d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~  222 (253)
                      |+++|+..         ...+...+..|...|..++-.|++++.+.++++||+|+-+|++....-......+   .....
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            99999985         2334566778999999999999999999999999999999999854211000001   11112


Q ss_pred             CCCceeEEEEcCCCCceEE-EEcCCcEEEEE
Q 035558          223 AGAEIEQLQWSSSQPDWVA-IAFSTKLQILR  252 (253)
Q Consensus       223 ~~~~v~~~~~~~~~~~~~~-~~~~~~i~vw~  252 (253)
                      .--...++..+|..+++++ ++.|-..++++
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence            2345688999999887775 45566666654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.71  E-value=2.4e-15  Score=108.88  Aligned_cols=228  Identities=17%  Similarity=0.138  Sum_probs=158.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCcccc-CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYC-GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~   90 (253)
                      .|.++..+..    .....+++-...... ....++.|+ +.+..++++..+|.+.+-+.....  .++.++.|.-+++-
T Consensus        96 ~i~~~r~~~~----~ss~~L~~ls~~ki~~~~~lslD~~-~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt  170 (339)
T KOG0280|consen   96 QIQLYRNDED----ESSVHLRGLSSKKISVVEALSLDIS-TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT  170 (339)
T ss_pred             eEEEEeeccc----eeeeeecccchhhhhheeeeEEEee-ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence            7777776654    223333332211110 124577888 778889999999999866655444  34578899999999


Q ss_pred             EEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCee
Q 035558           91 IAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV  168 (253)
Q Consensus        91 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  168 (253)
                      ..|+  +.+++.+|+.|+.+..||+|.++. ........|...|.++.-+|..+.+|++|++|.. |++||.|+..+|+.
T Consensus       171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLF  248 (339)
T ss_pred             eecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccc
Confidence            9999  889999999999999999995552 2333355677799999999989999999999999 99999998887776


Q ss_pred             eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCCc
Q 035558          169 ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFSTK  247 (253)
Q Consensus       169 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~  247 (253)
                      .-.- .+.|+.+.++|.-...|+.++.-+-.+|-+........  .........|.+-+..-.|......++++ ..|+.
T Consensus       249 ~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~--~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~  325 (339)
T KOG0280|consen  249 KAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEF--QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK  325 (339)
T ss_pred             cCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccch--heeeeccccccceeeccccccccceeeeeeccccc
Confidence            5543 47899999999653345555555567888777654321  00112344567777777785544434443 45666


Q ss_pred             EE-EE
Q 035558          248 LQ-IL  251 (253)
Q Consensus       248 i~-vw  251 (253)
                      ++ +|
T Consensus       326 ~~~~W  330 (339)
T KOG0280|consen  326 IRQLW  330 (339)
T ss_pred             eeeee
Confidence            44 66

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=5.8e-15  Score=124.74  Aligned_cols=243  Identities=11%  Similarity=0.106  Sum_probs=160.2

Q ss_pred             CCCCCceEEeecC--cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558            1 ECQKPDLLATSSD--FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE   75 (253)
Q Consensus         1 sp~~~~~l~~~~~--~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   75 (253)
                      +++.+.++++|++  +|++|+...-.   ...+...++....     .++.++... .+++.+|.++.||.|++.+++..
T Consensus      1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~-----sr~~~vt~~-~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG-----SRVEKVTMC-GNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred             cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC-----CceEEEEec-cCCCeEEEEcCCCeEEEEEcccc
Confidence            3567789999995  99999987631   1123333333233     678889888 88999999999999999998762


Q ss_pred             e-------eeeeeecc-cccEE-EEEec--CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558           76 A-------VDTQLIAH-DKEVY-DIAWG--GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR  143 (253)
Q Consensus        76 ~-------~~~~~~~~-~~~v~-~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  143 (253)
                      .       .......+ .+.+. ..+|.  ... .++.+..-+.|..||+++......+..... .+.|++++.+| .++
T Consensus      1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp-~~~ 1208 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDP-WCN 1208 (1431)
T ss_pred             ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-ccceeEEEecC-Cce
Confidence            1       11111212 23333 33444  444 788888899999999998764444433333 35899999999 888


Q ss_pred             EEEEEEeCCCeEEEEECCCCCCCeeee-cccccceeEEEEecCCC--CeEEEec--CCCcEEEEeccCCCCCCC---C--
Q 035558          144 YMATIIMDSAKVVVLDIRFPTLPVVEL-QRHQASVNAIAWAPHSS--CHICTAG--DDSQALIWDLSSMGQPVE---G--  213 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~--~~l~~~~--~dg~i~iwd~~~~~~~~~---~--  213 (253)
                      .++.|+..|. +.+||+|-.. ++... .++..+++.+..+|-.+  ...++++  ..+.|.+|++.++.....   .  
T Consensus      1209 WlviGts~G~-l~lWDLRF~~-~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1209 WLVIGTSRGQ-LVLWDLRFRV-PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred             EEEEecCCce-EEEEEeecCc-eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence            9999999998 9999999754 34443 23557888888887543  3454444  578999999998753320   0  


Q ss_pred             -----CCCCee--eccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          214 -----GLDPIL--AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       214 -----~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                           ...|..  ...+.-......+..-+..+++++.|..|+.||.
T Consensus      1287 ~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1287 APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence                 000110  0012222233344444556889999999999984

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.5e-14  Score=116.65  Aligned_cols=206  Identities=9%  Similarity=0.070  Sum_probs=128.7

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|.++|.+.     .....+..+.     ..+.+.+|+ |+++.|+..+.+   ..|++||+.+++... +....+.+..
T Consensus       177 ~L~~~D~dG-----~~~~~l~~~~-----~~v~~p~wS-PDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~  244 (427)
T PRK02889        177 QLQISDADG-----QNAQSALSSP-----EPIISPAWS-PDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSA  244 (427)
T ss_pred             EEEEECCCC-----CCceEeccCC-----CCcccceEc-CCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccc
Confidence            677777754     3333444555     678899999 889888876643   369999998886443 3334455678


Q ss_pred             EEec-CCCeEE-EEeCCCcEEEEEcC--CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCC
Q 035558           91 IAWG-GVGVFA-SVSADGSVRVFDLR--DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP  166 (253)
Q Consensus        91 ~~~~-~~~~l~-~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~  166 (253)
                      .+|+ +++.|+ +.+.+|...+|.++  ++. ...+   ..+........|+| +++.|+..+..++...+|.+......
T Consensus       245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l---t~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL---TQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC---CCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc
Confidence            8999 888776 56778887777654  333 2222   22233456788999 88888766654322666654322211


Q ss_pred             eeeecccccceeEEEEecCCCCeEEEecCCC---cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          167 VVELQRHQASVNAIAWAPHSSCHICTAGDDS---QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       167 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ...+..+.......+|+|+| ++++..+.++   .|.+||+.++....        +. .........|+|+++.++..+
T Consensus       320 ~~~lt~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~~--------lt-~~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        320 AQRVTFTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVTA--------LT-DTTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             eEEEecCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeEE--------cc-CCCCccCceECCCCCEEEEEE
Confidence            23332223334568999999 5777665443   69999998765221        11 122346789999999877655


Q ss_pred             cCC
Q 035558          244 FST  246 (253)
Q Consensus       244 ~~~  246 (253)
                      .++
T Consensus       390 ~~~  392 (427)
T PRK02889        390 QQG  392 (427)
T ss_pred             ecC
Confidence            443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.8e-16  Score=120.68  Aligned_cols=219  Identities=19%  Similarity=0.283  Sum_probs=170.2

Q ss_pred             cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec---CCCeEEEE
Q 035558           27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG---GVGVFASV  102 (253)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~  102 (253)
                      +.+...|..|.     +.|..|.|+ ..+..|++|+.|..|.+||...++....+. +|...|..-.|-   +...++++
T Consensus       132 ~~l~~kL~~H~-----GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~  205 (559)
T KOG1334|consen  132 LRLQKKLNKHK-----GCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS  205 (559)
T ss_pred             hhhhhcccCCC-----Cccceeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec
Confidence            45566778888     999999999 999999999999999999999888776665 798888888886   77789999


Q ss_pred             eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--Ceeeeccccc---ce
Q 035558          103 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--PVVELQRHQA---SV  177 (253)
Q Consensus       103 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~---~i  177 (253)
                      +.||.+++=.+..............|.++|..++.-|.+...|.+++.|+. +.-+|++....  .+..-..+..   ..
T Consensus       206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~-v~~~Dlr~~~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV-VFHIDLRQDVPAEKFVCREADEKERVGL  284 (559)
T ss_pred             cccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccc-eeeeeeccCCccceeeeeccCCccceee
Confidence            999999998877655444344445677799999999988999999999998 99999987542  1222223333   57


Q ss_pred             eEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC----CCC-eeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          178 NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG----LDP-ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +.++..|.....+++++.|-.+++||.+.........    ..| .......-.|++++++.++..++++-.|..|.+++
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            8899999887799999999999999998765432111    001 11113356789999998888899888888888764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=5.6e-15  Score=105.97  Aligned_cols=147  Identities=16%  Similarity=0.358  Sum_probs=96.9

Q ss_pred             EEEec-CCCeEEEEeC----------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE--eCCCeEE
Q 035558           90 DIAWG-GVGVFASVSA----------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII--MDSAKVV  156 (253)
Q Consensus        90 ~~~~~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~~~i~  156 (253)
                      .+.|+ .|+.|+.-..          -+...+|.++........... ...++|.+++|+| +++.|++..  .+.. |.
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP-~g~~favi~g~~~~~-v~   86 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSP-NGNEFAVIYGSMPAK-VT   86 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECc-CCCEEEEEEccCCcc-cE
Confidence            45666 6655443322          234666666544322222222 2234799999999 777765543  3455 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC---CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD---DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                      +||++  ..++..+.  ...++.+.|+|+| ++|++++.   .|.|.+||+++.+..        ....| ..++.++|+
T Consensus        87 lyd~~--~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i--------~~~~~-~~~t~~~Ws  152 (194)
T PF08662_consen   87 LYDVK--GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKI--------STFEH-SDATDVEWS  152 (194)
T ss_pred             EEcCc--ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEe--------ecccc-CcEEEEEEc
Confidence            99997  22355554  5678899999999 68888764   467999999965532        22333 347899999


Q ss_pred             CCCCceEEEEc------CCcEEEEEC
Q 035558          234 SSQPDWVAIAF------STKLQILRV  253 (253)
Q Consensus       234 ~~~~~~~~~~~------~~~i~vw~l  253 (253)
                      |+|++++++..      |+.++||+.
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEe
Confidence            99999886653      788999973

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.7e-14  Score=115.16  Aligned_cols=205  Identities=13%  Similarity=0.099  Sum_probs=131.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe---CCCeEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS---IDTTCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|.++|.+..    . .+.+..+.     ..+.+.+|+ |+++.|+..+   .+..|++|++.+++... +....+.+..
T Consensus       180 ~l~~~d~dg~----~-~~~lt~~~-----~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~  247 (429)
T PRK03629        180 ELRVSDYDGY----N-QFVVHRSP-----QPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGA  247 (429)
T ss_pred             eEEEEcCCCC----C-CEEeecCC-----CceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCC
Confidence            6888888763    2 23333444     578899999 8998887654   23579999998875332 2222334456


Q ss_pred             EEec-CCCeEEEE-eCCC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C-eEEEEECCCCC
Q 035558           91 IAWG-GVGVFASV-SADG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A-KVVVLDIRFPT  164 (253)
Q Consensus        91 ~~~~-~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~-~i~~~d~~~~~  164 (253)
                      .+|+ +++.|+.. +.+|  .|.+||+.+++... +.   .....+....|+| +++.|+..+.++ . .|+++|+.+..
T Consensus       248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt---~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT---DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc---CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC
Confidence            8999 99887755 4455  48889998775322 21   2233677899999 888887776554 2 25555665543


Q ss_pred             CCeeeecccccceeEEEEecCCCCeEEEec-CC--CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          165 LPVVELQRHQASVNAIAWAPHSSCHICTAG-DD--SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                        ...+..+........|+|+| ++|+..+ .+  ..|.+||+.++...        .+.. ........|+|+|+.++.
T Consensus       323 --~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~--------~Lt~-~~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        323 --PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ--------VLTD-TFLDETPSIAPNGTMVIY  390 (429)
T ss_pred             --eEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE--------EeCC-CCCCCCceECCCCCEEEE
Confidence              34444344456678999999 4665544 33  35888898776522        1111 122346789999998887


Q ss_pred             EEcCCc
Q 035558          242 IAFSTK  247 (253)
Q Consensus       242 ~~~~~~  247 (253)
                      .+.++.
T Consensus       391 ~s~~~~  396 (429)
T PRK03629        391 SSSQGM  396 (429)
T ss_pred             EEcCCC
Confidence            777665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.2e-14  Score=116.06  Aligned_cols=202  Identities=12%  Similarity=0.112  Sum_probs=130.2

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|.+||.+.     ...+.+..+.     ..+.+.+|+ |+++.|+..+.+   ..|++||+.+++... +....+...+
T Consensus       185 ~l~i~D~~g-----~~~~~lt~~~-----~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~  252 (433)
T PRK04922        185 ALQVADSDG-----YNPQTILRSA-----EPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGA  252 (433)
T ss_pred             EEEEECCCC-----CCceEeecCC-----CccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccC
Confidence            688888865     3333444555     678899999 889888877633   469999998776433 3333445567


Q ss_pred             EEec-CCCeEE-EEeCCC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C-eEEEEECCCCC
Q 035558           91 IAWG-GVGVFA-SVSADG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A-KVVVLDIRFPT  164 (253)
Q Consensus        91 ~~~~-~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~-~i~~~d~~~~~  164 (253)
                      .+|+ +++.++ +.+.+|  .|++||+.+++... +   ..+.......+|+| +++.|+..+..+ . .|+++|+.++.
T Consensus       253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-l---t~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-L---TNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-C---ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence            8999 888665 455555  59999998876322 2   22223456789999 888888776433 2 26666766543


Q ss_pred             CCeeeecccccceeEEEEecCCCCeEEEecCC-C--cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDD-S--QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                        ...+..+......++|+|+| ++++..+.+ +  .|.+||+.++...        . ..+........|+|+++.++.
T Consensus       328 --~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~--------~-Lt~~~~~~~p~~spdG~~i~~  395 (433)
T PRK04922        328 --AERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR--------T-LTPGSLDESPSFAPNGSMVLY  395 (433)
T ss_pred             --eEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE--------E-CCCCCCCCCceECCCCCEEEE
Confidence              33333333445578999999 466654433 2  6899998765421        1 122223456799999997765


Q ss_pred             EEc
Q 035558          242 IAF  244 (253)
Q Consensus       242 ~~~  244 (253)
                      .+.
T Consensus       396 ~s~  398 (433)
T PRK04922        396 ATR  398 (433)
T ss_pred             EEe
Confidence            544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=4.1e-14  Score=114.63  Aligned_cols=202  Identities=11%  Similarity=0.122  Sum_probs=134.2

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---CCeEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---DTTCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|.++|.+.     ...+.+..+.     ..+.+.+|+ |+++.|+..+.   +..|++||+.+++.. .+..+.+.+..
T Consensus       183 ~l~~~d~dg-----~~~~~lt~~~-----~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~  250 (435)
T PRK05137        183 RLAIMDQDG-----ANVRYLTDGS-----SLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFA  250 (435)
T ss_pred             EEEEECCCC-----CCcEEEecCC-----CCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccC
Confidence            677888765     3344555666     689999999 78988887653   468999999887643 34445667788


Q ss_pred             EEec-CCCeEE-EEeCCCc--EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECCCCC
Q 035558           91 IAWG-GVGVFA-SVSADGS--VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIRFPT  164 (253)
Q Consensus        91 ~~~~-~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~  164 (253)
                      .+|+ +++.|+ +.+.++.  |.+||+.++.... +   ..+........|+| +++.|+..+..+  ..|+++|+....
T Consensus       251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-L---t~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-L---TDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             cEECCCCCEEEEEEecCCCceEEEEECCCCceEE-c---cCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC
Confidence            8999 888765 5555655  7777888765322 2   22333566789999 888888766432  238888876543


Q ss_pred             CCeeeecccccceeEEEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                        ...+..+...+....|+|+| +.|+..+.+   ..|.+||+......        . ......+..+.|+|+|+.++.
T Consensus       326 --~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~~--------~-lt~~~~~~~p~~spDG~~i~~  393 (435)
T PRK05137        326 --PRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGER--------I-LTSGFLVEGPTWAPNGRVIMF  393 (435)
T ss_pred             --eEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCceE--------e-ccCCCCCCCCeECCCCCEEEE
Confidence              34444445556778999999 466655432   36778887554321        1 112234677899999987765


Q ss_pred             EEc
Q 035558          242 IAF  244 (253)
Q Consensus       242 ~~~  244 (253)
                      .+.
T Consensus       394 ~~~  396 (435)
T PRK05137        394 FRQ  396 (435)
T ss_pred             EEc
Confidence            443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.5e-16  Score=120.99  Aligned_cols=232  Identities=20%  Similarity=0.207  Sum_probs=159.4

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccce-eeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCce-e
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVEL-KSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREA-V   77 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~   77 (253)
                      +.|..|+++++  .|.+||....    +. .....+|.     ..|..-.|-|. +..-+++.+.||.+++=.+.... .
T Consensus       152 ~~Gd~l~SgSDD~~vv~WdW~~~----~~~l~f~SGH~-----~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~  222 (559)
T KOG1334|consen  152 QRGDVLASGSDDLQVVVWDWVSG----SPKLSFESGHC-----NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV  222 (559)
T ss_pred             ccCceeeccCccceEEeehhhcc----Ccccccccccc-----cchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence            46889999997  9999999875    33 34445777     56666667753 34568899999999987654332 2


Q ss_pred             --eeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC---CeeEEEeeCCCCCEEEEEEe
Q 035558           78 --DTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT---PLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        78 --~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~  150 (253)
                        ...+..|.++|..++.-  ....|.+++.|+.+.-+|+++......+......+.   ....++.+|.+.+.+++++.
T Consensus       223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~  302 (559)
T KOG1334|consen  223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS  302 (559)
T ss_pred             ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence              33455799999999998  788999999999999999998754333332222222   44555556655555666655


Q ss_pred             CCCeEEEEECCCCCC-----------------------------------------------------------------
Q 035558          151 DSAKVVVLDIRFPTL-----------------------------------------------------------------  165 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~-----------------------------------------------------------------  165 (253)
                      +.. +++||.+...+                                                                 
T Consensus       303 dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~  381 (559)
T KOG1334|consen  303 DQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQ  381 (559)
T ss_pred             hhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhh
Confidence            555 55555543211                                                                 


Q ss_pred             Ceee-eccccc--ceeEEE-EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          166 PVVE-LQRHQA--SVNAIA-WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       166 ~~~~-~~~~~~--~i~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      .++. +++|..  .|..+- |-|.. .|+++||.-|.|.||+-.+++...       ...+-..-|++|.=+|.-+.|++
T Consensus       382 ~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii~-------~MegDr~VVNCLEpHP~~PvLAs  453 (559)
T KOG1334|consen  382 YVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEIIR-------FMEGDRHVVNCLEPHPHLPVLAS  453 (559)
T ss_pred             ccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhHHHH-------HhhcccceEeccCCCCCCchhhc
Confidence            0111 344433  244443 34555 599999999999999998877543       44444448999999999998889


Q ss_pred             EEcCCcEEEEE
Q 035558          242 IAFSTKLQILR  252 (253)
Q Consensus       242 ~~~~~~i~vw~  252 (253)
                      +|-|..|+||-
T Consensus       454 SGid~DVKIWT  464 (559)
T KOG1334|consen  454 SGIDHDVKIWT  464 (559)
T ss_pred             cCCccceeeec
Confidence            99999999994

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=9.1e-15  Score=118.07  Aligned_cols=203  Identities=15%  Similarity=0.141  Sum_probs=132.1

Q ss_pred             CCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEE--eccCc
Q 035558            4 KPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIW--DIERE   75 (253)
Q Consensus         4 ~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vw--d~~~~   75 (253)
                      +++.|+..+    + .|++||+.++  ..+.+..+.+|.        ..++|+ |+++.|+.+. .+|.+.||  |+.++
T Consensus       214 DG~~la~~s~~~~~~~i~i~dl~tg--~~~~l~~~~g~~--------~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~  282 (429)
T PRK01742        214 DGSKLAYVSFENKKSQLVVHDLRSG--ARKVVASFRGHN--------GAPAFS-PDGSRLAFASSKDGVLNIYVMGANGG  282 (429)
T ss_pred             CCCEEEEEEecCCCcEEEEEeCCCC--ceEEEecCCCcc--------CceeEC-CCCCEEEEEEecCCcEEEEEEECCCC
Confidence            555566543    2 6999999874  112233344433        368999 8898887764 67765554  66555


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      + ...+..+...+....|+ +++.++.++ .+|...+|++..........   .+..  ....|+| +++.+++.+.+ .
T Consensus       283 ~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~~~~Sp-DG~~ia~~~~~-~  354 (429)
T PRK01742        283 T-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GGRG--YSAQISA-DGKTLVMINGD-N  354 (429)
T ss_pred             C-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cCCC--CCccCCC-CCCEEEEEcCC-C
Confidence            4 34455566778899999 888776555 57888999876543222221   1221  4578999 88888887764 4


Q ss_pred             eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                       +.+||+.++..  ..+... .....+.|+|+| ++|+.++.++.+.+|++.......     ...+..|.+.+...+|+
T Consensus       355 -i~~~Dl~~g~~--~~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~-----~~~l~~~~g~~~~p~ws  424 (429)
T PRK01742        355 -VVKQDLTSGST--EVLSST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRF-----KARLPGSDGQVKFPAWS  424 (429)
T ss_pred             -EEEEECCCCCe--EEecCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCc-----eEEccCCCCCCCCcccC
Confidence             77799987652  222211 123567899999 689988889999988874322111     13555677888999999


Q ss_pred             CC
Q 035558          234 SS  235 (253)
Q Consensus       234 ~~  235 (253)
                      |-
T Consensus       425 p~  426 (429)
T PRK01742        425 PY  426 (429)
T ss_pred             CC
Confidence            85

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.64  E-value=1e-13  Score=100.58  Aligned_cols=224  Identities=13%  Similarity=0.157  Sum_probs=155.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC--CCCC-EEEEEeCCCeEEEEeccCceeeeeeecc---c--
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEPR-RIGTSSIDTTCTIWDIEREAVDTQLIAH---D--   85 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~--   85 (253)
                      .+.+|++... + .....+++.-..    +.++.+.|..  .++. .++-+..+|.|.++..........+++-   .  
T Consensus        47 kl~Lys~~d~-~-~~~l~~~q~~dt----s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~  120 (339)
T KOG0280|consen   47 KLHLYSLEDM-K-LSPLDTLQCTDT----STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS  120 (339)
T ss_pred             ceEEEeeccc-c-cCccceeeeecc----cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhh
Confidence            4677877664 1 111222222111    5677777752  3444 5666777899999987655433333321   1  


Q ss_pred             -ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558           86 -KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP  163 (253)
Q Consensus        86 -~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  163 (253)
                       ....++.|+ .+..++++-.+|.+.+-+..... ......-..|+-++..++|+..+.+++.+|+.|+. +..||+|.+
T Consensus       121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p  198 (339)
T KOG0280|consen  121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP  198 (339)
T ss_pred             heeeeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC
Confidence             123466777 77889999999999966554432 22223445677788999999888899999999998 999999965


Q ss_pred             CCCeee-ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEE
Q 035558          164 TLPVVE-LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVA  241 (253)
Q Consensus       164 ~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~  241 (253)
                      ...+.. .+.|...|.++.-+|..+.++++|+.|-.|++||.++..+|.       ....-.+.|+.+.++|.-. .+++
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-------~~~~v~GGVWRi~~~p~~~~~lL~  271 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-------FKAKVGGGVWRIKHHPEIFHRLLA  271 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-------ccCccccceEEEEecchhhhHHHH
Confidence            544443 566889999999999877899999999999999999888775       4445568999999999754 2345


Q ss_pred             EEcCCcEEEEE
Q 035558          242 IAFSTKLQILR  252 (253)
Q Consensus       242 ~~~~~~i~vw~  252 (253)
                      ++.-+..+|.+
T Consensus       272 ~CMh~G~ki~~  282 (339)
T KOG0280|consen  272 ACMHNGAKILD  282 (339)
T ss_pred             HHHhcCceEEE
Confidence            55555555554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.62  E-value=1.6e-13  Score=101.61  Aligned_cols=240  Identities=14%  Similarity=0.207  Sum_probs=163.5

Q ss_pred             CCCceEEeecC--cEEEEEccCCc-cccceeeeecCCCCc-------cccCCeeEEEecCC-CCCEEEEEeCCCeEEEEe
Q 035558            3 QKPDLLATSSD--FLRVWRISDED-RRVELKSLLNGNKNS-------EYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWD   71 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~-~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd   71 (253)
                      ..|++||+|..  .|.++.-.... .++.....++.|...       +....|..+.|.++ +...++..+.|.+|++|.
T Consensus        35 ~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWK  114 (433)
T KOG1354|consen   35 HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWK  114 (433)
T ss_pred             cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeee
Confidence            46899999985  88888765431 234455666666522       12257888999843 345566777899999998


Q ss_pred             ccCcee-----------------------------------eeee-ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC
Q 035558           72 IEREAV-----------------------------------DTQL-IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR  114 (253)
Q Consensus        72 ~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~  114 (253)
                      +.....                                   .+.+ .+|+--|.++.++ +...++++ .|-.|.+|+++
T Consensus       115 i~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnle  193 (433)
T KOG1354|consen  115 IRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLE  193 (433)
T ss_pred             eeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeecccc
Confidence            754210                                   0111 2577889999999 88888875 57789999998


Q ss_pred             CCCCeeeeeccCCC-----CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCC-----eee----------ecccc
Q 035558          115 DKEHSTIIYESSEP-----DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP-----VVE----------LQRHQ  174 (253)
Q Consensus       115 ~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-----~~~----------~~~~~  174 (253)
                      -....-.+.....+     ...|++..|+|...+.++-++..|. |++.|+|....+     +..          +..--
T Consensus       194 i~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiI  272 (433)
T KOG1354|consen  194 IIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEII  272 (433)
T ss_pred             ccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhhhhccccCCcchhhHHHHh
Confidence            55432222222221     1368899999988888888888888 999999954321     111          11112


Q ss_pred             cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC------------CCce---eEEEEcCCCCce
Q 035558          175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA------------GAEI---EQLQWSSSQPDW  239 (253)
Q Consensus       175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~~v---~~~~~~~~~~~~  239 (253)
                      ..|..+.|+++| +++++-.. -+|++||+.....|.      ....-|            ...|   ..++|+-++.++
T Consensus       273 sSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~pv------~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v  344 (433)
T KOG1354|consen  273 SSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKPV------ETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV  344 (433)
T ss_pred             hhhhceEEccCC-cEEEEecc-ceeEEEeccccCCcc------eEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence            468889999999 78888653 689999998776665      222222            1222   468899999899


Q ss_pred             EEEEcCCcEEEEE
Q 035558          240 VAIAFSTKLQILR  252 (253)
Q Consensus       240 ~~~~~~~~i~vw~  252 (253)
                      ++|+..+.+++++
T Consensus       345 ~TGsy~n~frvf~  357 (433)
T KOG1354|consen  345 MTGSYNNVFRVFN  357 (433)
T ss_pred             ecccccceEEEec
Confidence            9999999999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=2e-13  Score=98.01  Aligned_cols=149  Identities=17%  Similarity=0.393  Sum_probs=100.6

Q ss_pred             eEEEecCCCCCEEEEEeC----------CCeEEEEeccC-ceeeeeeec-ccccEEEEEec-CCCeEEEE--eCCCcEEE
Q 035558           46 TSFDWNEAEPRRIGTSSI----------DTTCTIWDIER-EAVDTQLIA-HDKEVYDIAWG-GVGVFASV--SADGSVRV  110 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~--~~dg~i~i  110 (253)
                      ..+.|+ ++|+.|+.-..          -|...+|.++. +.....+.- ..++|.+++|+ +++.|++.  ..++.|.+
T Consensus         9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            367888 77776654432          12344555532 223333432 34579999999 88876554  46789999


Q ss_pred             EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECCCCCCCeeeecccccceeEEEEecCCCC
Q 035558          111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC  188 (253)
Q Consensus       111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  188 (253)
                      ||++..    .+....  ...+..+.|+| +|+++++++.++  +.|.+||.++.+. +.... | ..++.++|+|+| +
T Consensus        88 yd~~~~----~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~~-~-~~~t~~~WsPdG-r  156 (194)
T PF08662_consen   88 YDVKGK----KIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTFE-H-SDATDVEWSPDG-R  156 (194)
T ss_pred             EcCccc----EeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEE-eeccc-c-CcEEEEEEcCCC-C
Confidence            999732    222222  33778999999 999999987542  2499999996442 44433 3 347899999999 6


Q ss_pred             eEEEecC------CCcEEEEeccC
Q 035558          189 HICTAGD------DSQALIWDLSS  206 (253)
Q Consensus       189 ~l~~~~~------dg~i~iwd~~~  206 (253)
                      +|+++..      |+.++||+...
T Consensus       157 ~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  157 YLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEEEeccceeccccEEEEEecC
Confidence            8887763      88999999864

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=3.3e-14  Score=118.35  Aligned_cols=190  Identities=17%  Similarity=0.201  Sum_probs=142.6

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +..+....++ .+.+||....    ......+..+.... ....-+-++ .+.-++++|+.-+.|.+|+....+.-..+.
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~----~~~~~i~~~er~~l-~~~~~~g~s-~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNS----SVLSKIQSDERCTL-YSSLIIGDS-AEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             cceEEEEEcCceEEEEecccC----ceehhcCCCceEEE-EeEEEEecc-CcEEEEEeccccccEEEEeccccCCcceec
Confidence            3444445555 9999998875    44444433321000 122223345 667789999999999999987443333578


Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      +|++.|.++.|+ +++++++.|+|.++++|++.+.+...  ....+|...+..+.|.| +  .+++++.|.. .++|+..
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~-n--~i~t~gedct-crvW~~~  246 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLP-N--RIITVGEDCT-CRVWGVN  246 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEecc-c--eeEEeccceE-EEEEecc
Confidence            999999999999 99999999999999999999987443  23447778999999998 4  9999999998 9999765


Q ss_pred             CCCCCeeeecccc-cceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          162 FPTLPVVELQRHQ-ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       162 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      ...  +..+..|. ..|..++..+.. ..++|++.|+.+++||+....
T Consensus       247 ~~~--l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  247 GTQ--LEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             cce--ehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhccc
Confidence            433  44666665 479999999987 599999999999999987643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=6.7e-14  Score=109.95  Aligned_cols=190  Identities=18%  Similarity=0.281  Sum_probs=147.1

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++-+++.+|++ .|+-++++.+    +.+..+....     +.++++..+ +...+|++|+.+|.|..||.+....+..+
T Consensus       144 ~scDly~~gsg~evYRlNLEqG----rfL~P~~~~~-----~~lN~v~in-~~hgLla~Gt~~g~VEfwDpR~ksrv~~l  213 (703)
T KOG2321|consen  144 PSCDLYLVGSGSEVYRLNLEQG----RFLNPFETDS-----GELNVVSIN-EEHGLLACGTEDGVVEFWDPRDKSRVGTL  213 (703)
T ss_pred             CCccEEEeecCcceEEEEcccc----cccccccccc-----ccceeeeec-CccceEEecccCceEEEecchhhhhheee
Confidence            34567777776 9999999998    7777777766     789999999 77789999999999999999877655444


Q ss_pred             e------cccc-----cEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           82 I------AHDK-----EVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        82 ~------~~~~-----~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      .      .|.+     .|+++.|+ ++-.+++|..+|.+.|||+++.++.  +...+..+.+|..+.|.+.++. -.+.+
T Consensus       214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~~q-~~v~S  290 (703)
T KOG2321|consen  214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTDQQ-NKVVS  290 (703)
T ss_pred             ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce--eecccCCccceeeecccccCCC-ceEEe
Confidence            3      2333     49999999 7999999999999999999998853  3333455569999999884333 22334


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .|...++|||-.+++. ...+.. ...++.+|+-|+++ +++++-.++.+..|-+....
T Consensus       291 ~Dk~~~kiWd~~~Gk~-~asiEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  291 MDKRILKIWDECTGKP-MASIEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             cchHHhhhcccccCCc-eeeccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccccC
Confidence            4555599999988763 555553 45699999999985 99999999999888777644

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.61  E-value=8.2e-13  Score=106.82  Aligned_cols=204  Identities=15%  Similarity=0.182  Sum_probs=132.8

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|.++|.+..    . .+.+..+.     ..+...+|+ +++++|+.+..+   ..|++||+.+++... +..+...+.+
T Consensus       171 ~l~~~d~~g~----~-~~~l~~~~-----~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~  238 (417)
T TIGR02800       171 ELQVADYDGA----N-PQTITRSR-----EPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGA  238 (417)
T ss_pred             eEEEEcCCCC----C-CEEeecCC-----CceecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccc
Confidence            5778887653    2 33344454     568888999 899988877643   479999998875433 3335556677


Q ss_pred             EEec-CCCeEE-EEeCCC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCCCC
Q 035558           91 IAWG-GVGVFA-SVSADG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRFPT  164 (253)
Q Consensus        91 ~~~~-~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~~  164 (253)
                      ++|+ +++.|+ +.+.++  .|++||+.++.... +.   .+........|+| +++.|+..+..++  .|+++|+.+.+
T Consensus       239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~---~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT---NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             eEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC---CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence            8999 887665 444444  58888988765322 21   2222445678999 8888776654332  37777877543


Q ss_pred             CCeeeecccccceeEEEEecCCCCeEEEecCCC---cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDDS---QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                        ...+..+......+.|+|++ ++++.++.++   .|.+||+.+....        .... ........|+|+++.++.
T Consensus       314 --~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~~--------~l~~-~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       314 --VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGER--------VLTD-TGLDESPSFAPNGRMILY  381 (417)
T ss_pred             --EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCeE--------EccC-CCCCCCceECCCCCEEEE
Confidence              34444455667788999999 5777776665   7888888764321        1111 122345689999988876


Q ss_pred             EEcCC
Q 035558          242 IAFST  246 (253)
Q Consensus       242 ~~~~~  246 (253)
                      .+.++
T Consensus       382 ~~~~~  386 (417)
T TIGR02800       382 ATTRG  386 (417)
T ss_pred             EEeCC
Confidence            66554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.61  E-value=7.3e-15  Score=108.11  Aligned_cols=215  Identities=15%  Similarity=0.299  Sum_probs=152.0

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCE-EEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRR-IGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++|+++|++++ .+.|-|..+-    +..+.+..-      +.|.-+.|. .+..+ |.....++.|.+|++...+-...
T Consensus        18 p~g~yiAs~~~yrlviRd~~tl----q~~qlf~cl------dki~yieW~-ads~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   18 PCGNYIASLSRYRLVIRDSETL----QLHQLFLCL------DKIVYIEWK-ADSCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             CCCCeeeeeeeeEEEEeccchh----hHHHHHHHH------HHhhheeee-ccceeeeeeeeccceEEEEEeecceeEEE
Confidence            68899999999 8888888774    544444332      467788998 66554 45567888999999999888888


Q ss_pred             eecccccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      +.....++.+++|+ +++ .|.+...|-.|.+|.+.+.+....  .  ..+..+..++|+| ++++.+.++..+. ...+
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~--~pK~~~kg~~f~~-dg~f~ai~sRrDC-kdyv  160 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--P--HPKTNVKGYAFHP-DGQFCAILSRRDC-KDYV  160 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--c--ccccCceeEEECC-CCceeeeeecccH-HHHH
Confidence            88778899999999 885 566677799999999998873322  2  2233568899999 9999998887654 3333


Q ss_pred             ECCCCC--CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          159 DIRFPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       159 d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      .+..-+  ..+..+....-..+.+.|+||| ..|+         +||---..+        .....-+-.+..++|+|.+
T Consensus       161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Leyk--------v~aYe~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  161 QISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEYK--------VYAYERGLGLKFVEWSPCN  222 (447)
T ss_pred             HHHhhHHHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhhe--------eeeeeeccceeEEEecccc
Confidence            332111  1234444455567889999999 4554         455332111        1223334678899999999


Q ss_pred             CceEEEEcCCcEEEEE
Q 035558          237 PDWVAIAFSTKLQILR  252 (253)
Q Consensus       237 ~~~~~~~~~~~i~vw~  252 (253)
                      +.+..++.|+.+||.+
T Consensus       223 qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  223 QFLAVGSYDQMLRVLN  238 (447)
T ss_pred             ceEEeeccchhhhhhc
Confidence            8777888999888753

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=9.2e-15  Score=117.97  Aligned_cols=237  Identities=19%  Similarity=0.327  Sum_probs=168.6

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC--CCCEEEEEeCCCeEEEEeccCce---ee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA--EPRRIGTSSIDTTCTIWDIEREA---VD   78 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~---~~   78 (253)
                      |+=+|.++. .+.+-|++....++..+.-+..       -.|-.+.|+|.  ....+++.+ ...-.+|++....   ..
T Consensus        36 grdi~lAsr~gl~i~dld~p~~ppr~l~h~tp-------w~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIe  107 (1081)
T KOG0309|consen   36 GRDIVLASRQGLYIIDLDDPFTPPRWLHHITP-------WQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIE  107 (1081)
T ss_pred             cchhhhhhhcCeEEEeccCCCCCceeeeccCc-------chhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceE
Confidence            444555665 7888888775333343333333       23667788752  233455444 5566789986432   33


Q ss_pred             eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           79 TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ..+.+|...|+++.|+  ....+++++.|-.+..||+++...  .++...........++|+-.++..+|+...  ..|.
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p~vlasshg--~~i~  183 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDPNVLASSHG--NDIF  183 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCcchhhhccC--CceE
Confidence            4556899999999999  888999999999999999999873  333333444467789999877777775433  3399


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC-------------------------
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV-------------------------  211 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------  211 (253)
                      +||++.+..++..+++|...|++++|+......+.+++.||+|+.||........                         
T Consensus       184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m  263 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM  263 (1081)
T ss_pred             EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence            9999999999999999999999999988655588999999999999987543100                         


Q ss_pred             -----------------------CCCCCCeeeccCCCceeEEEEcCCCC----------ceEEEEcCCcEEEEEC
Q 035558          212 -----------------------EGGLDPILAYTAGAEIEQLQWSSSQP----------DWVAIAFSTKLQILRV  253 (253)
Q Consensus       212 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~i~vw~l  253 (253)
                                             ........+.+|...|....|-..+.          .|++-+.|..+++|.+
T Consensus       264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence                                   00122345667888887777754332          5889999999999975

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.3e-12  Score=105.56  Aligned_cols=204  Identities=10%  Similarity=0.092  Sum_probs=127.4

Q ss_pred             CCCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEE-eCCC--eEEEEeccC
Q 035558            3 QKPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTS-SIDT--TCTIWDIER   74 (253)
Q Consensus         3 ~~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg--~i~vwd~~~   74 (253)
                      ++|+.|+..+    + .+.+|++.++  ..+.+..+.+        .+....|+ |+++.|+.. +.+|  .|++||+++
T Consensus       208 PDG~~la~~s~~~g~~~i~i~dl~~G--~~~~l~~~~~--------~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~t  276 (429)
T PRK03629        208 PDGSKLAYVTFESGRSALVIQTLANG--AVRQVASFPR--------HNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLAS  276 (429)
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCC--CeEEccCCCC--------CcCCeEEC-CCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3455555432    3 8999999775  1122222333        33468899 788877754 4444  589999988


Q ss_pred             ceeeeeeecccccEEEEEec-CCCeEEEEeCC-CcEEEE--EcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           75 EAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD-GSVRVF--DLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        75 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-g~i~i~--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ++... +..+...+....|+ +++.|+..+.+ +...+|  |+.+++.. .+..   .........|+| +++.|+..+.
T Consensus       277 g~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~~~~~~~Sp-DG~~Ia~~~~  350 (429)
T PRK03629        277 GQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQNQDADVSS-DGKFMVMVSS  350 (429)
T ss_pred             CCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCCccCEEECC-CCCEEEEEEc
Confidence            76544 33344567889999 99988777654 444454  66655422 2221   122456788999 8888887665


Q ss_pred             CC--CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc---EEEEeccCCCCCCCCCCCCeeeccCCC
Q 035558          151 DS--AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ---ALIWDLSSMGQPVEGGLDPILAYTAGA  225 (253)
Q Consensus       151 ~~--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (253)
                      ++  ..|.+||+.++.  ...+.. ........|+||| +.|+.++.++.   +.++++.... .       ..+..|..
T Consensus       351 ~~g~~~I~~~dl~~g~--~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~-~-------~~l~~~~~  418 (429)
T PRK03629        351 NGGQQHIAKQDLATGG--VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRF-K-------ARLPATDG  418 (429)
T ss_pred             cCCCceEEEEECCCCC--eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCC-e-------EECccCCC
Confidence            43  238889987754  333332 1223467899999 57877776664   5666664332 2       24556778


Q ss_pred             ceeEEEEcCC
Q 035558          226 EIEQLQWSSS  235 (253)
Q Consensus       226 ~v~~~~~~~~  235 (253)
                      .+...+|+|-
T Consensus       419 ~~~~p~Wsp~  428 (429)
T PRK03629        419 QVKFPAWSPY  428 (429)
T ss_pred             CcCCcccCCC
Confidence            8889999984

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.57  E-value=5.1e-12  Score=99.68  Aligned_cols=193  Identities=18%  Similarity=0.256  Sum_probs=147.9

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec------C-------------CCCCEEE
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN------E-------------AEPRRIG   59 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~   59 (253)
                      +|+...++|... + .+++|+...+    +....+......  .+..++..|.      |             .+...++
T Consensus         1 ~~~~~~~~A~~~~~g~l~iw~t~~~----~~~~e~~p~~~~--s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv   74 (541)
T KOG4547|consen    1 SPPALDYFALSTGDGRLRIWDTAKN----QLQQEFAPIASL--SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV   74 (541)
T ss_pred             CCchhheEeecCCCCeEEEEEccCc----eeeeeeccchhc--cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence            577777888766 4 9999999886    555444432110  0333444442      1             1234688


Q ss_pred             EEeCCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEE
Q 035558           60 TSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLG  136 (253)
Q Consensus        60 ~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~  136 (253)
                      -|...|.|.+|++..++....+.  .|.+.|.++.++ +-..|.+++.|+.+..|+........   ........+.+++
T Consensus        75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~~~~sl~  151 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKPLVSSLC  151 (541)
T ss_pred             eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCCccceEE
Confidence            89999999999999999887776  689999999999 88999999999999999998886333   3334444788999


Q ss_pred             eeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecC-----CCCeEEEecCCCcEEEEeccCC
Q 035558          137 WNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH-----SSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      .+| ++..+++++..   |++||+.+.+. +..|.+|.++|.++.|-.+     |..+|.+...+.-+.+|-+...
T Consensus       152 is~-D~~~l~~as~~---ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  152 ISP-DGKILLTASRQ---IKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             EcC-CCCEEEeccce---EEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            999 79999988754   99999998664 8999999999999999887     6456666667888889987763

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.56  E-value=1.7e-12  Score=96.21  Aligned_cols=227  Identities=14%  Similarity=0.228  Sum_probs=160.1

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc----Cceee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE----REAVD   78 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~   78 (253)
                      +..++....| ++|||--....   +....+.....    .++++++++ ++...|+.|-.+|++.-+.+.    .....
T Consensus        36 e~gv~~~s~drtvrv~lkrds~---q~wpsI~~~mP----~~~~~~~y~-~e~~~L~vg~~ngtvtefs~sedfnkm~~~  107 (404)
T KOG1409|consen   36 EEGVISVSEDRTVRVWLKRDSG---QYWPSIYHYMP----SPCSAMEYV-SESRRLYVGQDNGTVTEFALSEDFNKMTFL  107 (404)
T ss_pred             CCCeEEccccceeeeEEecccc---ccCchhhhhCC----CCceEeeee-ccceEEEEEEecceEEEEEhhhhhhhcchh
Confidence            3334444445 99999765431   22222222111    678999999 888899999999999888654    33455


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      +....|...+..+-|+ ....+++.+.|..+.---.+.+....-....    ...+.+.+.-   .+..+|...+. |..
T Consensus       108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----~~~t~~~~d~---~~~fvGd~~gq-vt~  179 (404)
T KOG1409|consen  108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----TPASALQFDA---LYAFVGDHSGQ-ITM  179 (404)
T ss_pred             hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----ccCCCCceee---EEEEecccccc-eEE
Confidence            5566899999999999 9999999999988766555555422111110    0112222221   13344444444 555


Q ss_pred             EECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          158 LDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       158 ~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      -.+.... .++.++.+|.+.+.+++|.|.. ++|++|..|..+.+||+.......      ....+|...|..+..-+.-
T Consensus       180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~------~el~gh~~kV~~l~~~~~t  252 (404)
T KOG1409|consen  180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTA------YELQGHNDKVQALSYAQHT  252 (404)
T ss_pred             EEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCccee------eeeccchhhhhhhhhhhhh
Confidence            4443322 4578899999999999999987 699999999999999998776544      6788999999999998888


Q ss_pred             CceEEEEcCCcEEEEEC
Q 035558          237 PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~~~~~i~vw~l  253 (253)
                      +.+++++.|+.|.+|++
T Consensus       253 ~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  253 RQLISCGEDGGIVVWNM  269 (404)
T ss_pred             eeeeeccCCCeEEEEec
Confidence            88999999999999986

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=2.2e-13  Score=100.96  Aligned_cols=204  Identities=16%  Similarity=0.240  Sum_probs=138.4

Q ss_pred             cCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeeeeec-----ccccEEEEEec--CCCeEEEEeCCCcEEEE
Q 035558           42 CGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQLIA-----HDKEVYDIAWG--GVGVFASVSADGSVRVF  111 (253)
Q Consensus        42 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-----~~~~v~~~~~~--~~~~l~~~~~dg~i~i~  111 (253)
                      +.-|.+++++ .+...++++ .|=.|.+|+++-..   .+-.++.     ...-|++..|+  ..+.|+-.+..|+|++.
T Consensus       164 tyhiNSIS~N-sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  164 TYHINSISVN-SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             eeEeeeeeec-CccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            3778999999 888888887 47789999987432   1222222     24578899999  77889999999999999


Q ss_pred             EcCCCCC----eeeeeccCC---------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc---
Q 035558          112 DLRDKEH----STIIYESSE---------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA---  175 (253)
Q Consensus       112 d~~~~~~----~~~~~~~~~---------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---  175 (253)
                      |++....    .+.......         .-..|..+.|++ +|+++++-.+-  +|++||+.....|+..++-|..   
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDyl--tvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDYL--TVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEeccc--eeEEEeccccCCcceEEeehHhHHH
Confidence            9995421    111111111         113688899999 99999975543  4999999877778888776642   


Q ss_pred             ---------c---eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC---C---------CCCeeec----------
Q 035558          176 ---------S---VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG---G---------LDPILAY----------  221 (253)
Q Consensus       176 ---------~---i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~---------~~~~~~~----------  221 (253)
                               .   -..++|+.++ .+++||+.....++|+...+......   .         ..+....          
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~  397 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEI  397 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccccc
Confidence                     1   2347888888 59999999999999996655421100   0         0011111          


Q ss_pred             -----cCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          222 -----TAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       222 -----~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                           .....+...+|+|... .+|++.-+.+.++.
T Consensus       398 ~vd~ldf~kkilh~aWhp~en-~ia~aatnnlyif~  432 (433)
T KOG1354|consen  398 SVDALDFRKKILHTAWHPKEN-SIAVAATNNLYIFQ  432 (433)
T ss_pred             ccchhhhhhHHHhhccCCccc-eeeeeecCceEEec
Confidence                 1123456778999986 66666666777763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.55  E-value=1.2e-10  Score=91.52  Aligned_cols=241  Identities=12%  Similarity=0.121  Sum_probs=147.1

Q ss_pred             CCCCceEEeec---C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccC-
Q 035558            2 CQKPDLLATSS---D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIER-   74 (253)
Q Consensus         2 p~~~~~l~~~~---~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-   74 (253)
                      |.+..+.++..   +  .|..|++......++.+.......     .....++++ +++++|+++. .+|.|.++++.. 
T Consensus        46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-----~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~  119 (345)
T PF10282_consen   46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG-----SSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDD  119 (345)
T ss_dssp             TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS-----SCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC-----CCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCC
Confidence            44554555543   2  788888876323344444444222     345578998 7888888776 589999999976 


Q ss_pred             ceeeee---ee----------cccccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCC-eee-eeccCCCCCCeeEEEe
Q 035558           75 EAVDTQ---LI----------AHDKEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEH-STI-IYESSEPDTPLVRLGW  137 (253)
Q Consensus        75 ~~~~~~---~~----------~~~~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~-~~~-~~~~~~~~~~i~~~~~  137 (253)
                      +.....   +.          .......++.++ +++++++.. ....|.+|++..... ... .............++|
T Consensus       120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f  199 (345)
T PF10282_consen  120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF  199 (345)
T ss_dssp             SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred             cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence            332221   11          112456789999 888777654 345799999987652 211 1112233447899999


Q ss_pred             eCCCCCEEEEEEeCCCeEEEEECCCCCCCe---eeecc------cccceeEEEEecCCCCeEEE-ecCCCcEEEEeccCC
Q 035558          138 NKQDPRYMATIIMDSAKVVVLDIRFPTLPV---VELQR------HQASVNAIAWAPHSSCHICT-AGDDSQALIWDLSSM  207 (253)
Q Consensus       138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~---~~~~~------~~~~i~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~  207 (253)
                      +| +++++++.......|.++++......+   ..+..      .......++++|++ ++|++ ...+++|.+|++...
T Consensus       200 ~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  200 SP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             -T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTT
T ss_pred             cC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecC
Confidence            99 888888877776679999988322111   11111      11257789999999 56654 446789999999543


Q ss_pred             CCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          208 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      ....   .............+.++++|++++++++. .++.|.+|++
T Consensus       278 ~g~l---~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  278 TGTL---TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             TTTE---EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             CCce---EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            2111   00112222355589999999999888665 5678888863

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.55  E-value=1.1e-12  Score=103.44  Aligned_cols=187  Identities=12%  Similarity=0.163  Sum_probs=146.4

Q ss_pred             CCCCCEEEEEeCCCeEEEEeccCceeeeeeec---ccccEEEEEec---------------------CCCeEEEEeCCCc
Q 035558           52 EAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA---HDKEVYDIAWG---------------------GVGVFASVSADGS  107 (253)
Q Consensus        52 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~---------------------~~~~l~~~~~dg~  107 (253)
                      |+...++|..+.||.+++|+...++..+.+..   -.+...+..|.                     +...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            46678999999999999999998876665542   12333444443                     2346788888999


Q ss_pred             EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCC
Q 035558          108 VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS  187 (253)
Q Consensus       108 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  187 (253)
                      |.+|+...++.... .....|.+.|.++.++. +...|.+++.|.. +..|+...... ..........+.+++.+||+ 
T Consensus        82 v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~-v~~~~~~~~~~-~~~~~~~~~~~~sl~is~D~-  156 (541)
T KOG4547|consen   82 VLLYSVAGGEITAK-LSTDKHYGNVNEILDAQ-RLGCIYSVGADLK-VVYILEKEKVI-IRIWKEQKPLVSSLCISPDG-  156 (541)
T ss_pred             EEEEEecCCeEEEE-EecCCCCCcceeeeccc-ccCceEecCCcee-EEEEeccccee-eeeeccCCCccceEEEcCCC-
Confidence            99999998874333 33456777999999987 8889999999998 99999987553 67777788889999999998 


Q ss_pred             CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC-----CCceEE-EEcCCcEEEEE
Q 035558          188 CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS-----QPDWVA-IAFSTKLQILR  252 (253)
Q Consensus       188 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~-~~~~~~i~vw~  252 (253)
                      ..|++++  +.|++||+++.+...       .+.+|.++|++++|...     |.++++ ...+..+.+|.
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~-------~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVI-------TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEE-------EecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            5888887  689999999987654       88899999999999877     677775 44555666664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.9e-11  Score=99.27  Aligned_cols=202  Identities=13%  Similarity=0.117  Sum_probs=124.0

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|.++|.+..    . ...+..+.     ..+....|+ |+++.|+..+.+   ..|.+||+.+++... +....+.+..
T Consensus       180 ~l~~~d~~g~----~-~~~l~~~~-----~~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~  247 (430)
T PRK00178        180 TLQRSDYDGA----R-AVTLLQSR-----EPILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGA  247 (430)
T ss_pred             EEEEECCCCC----C-ceEEecCC-----CceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCC
Confidence            4777777653    2 33344444     678899999 888888766533   369999998876433 3223344557


Q ss_pred             EEec-CCCeEE-EEeCCC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C-eEEEEECCCCC
Q 035558           91 IAWG-GVGVFA-SVSADG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A-KVVVLDIRFPT  164 (253)
Q Consensus        91 ~~~~-~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~-~i~~~d~~~~~  164 (253)
                      .+|+ +++.|+ +...+|  .|.++|+.++.... +.   .+........|+| +++.++..+..+ . .|+++|+.+++
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt---~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT---NHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc---cCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence            8999 888776 444555  58888998775322 21   2233456678999 788777665432 2 37777876654


Q ss_pred             CCeeeecccccceeEEEEecCCCCeEEEec-CCC--cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          165 LPVVELQRHQASVNAIAWAPHSSCHICTAG-DDS--QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                        ...+...........|+|++. .++..+ .++  .|.++|+.++....        +. .........|+|+|+.++.
T Consensus       323 --~~~lt~~~~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~~~--------lt-~~~~~~~p~~spdg~~i~~  390 (430)
T PRK00178        323 --AERVTFVGNYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGSVRI--------LT-DTSLDESPSVAPNGTMLIY  390 (430)
T ss_pred             --EEEeecCCCCccceEECCCCC-EEEEEEccCCceEEEEEECCCCCEEE--------cc-CCCCCCCceECCCCCEEEE
Confidence              232222222334578999994 665544 343  57788887765221        11 1112234589999987765


Q ss_pred             EEc
Q 035558          242 IAF  244 (253)
Q Consensus       242 ~~~  244 (253)
                      .+.
T Consensus       391 ~~~  393 (430)
T PRK00178        391 ATR  393 (430)
T ss_pred             EEe
Confidence            443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.52  E-value=9.7e-12  Score=91.95  Aligned_cols=220  Identities=19%  Similarity=0.291  Sum_probs=145.6

Q ss_pred             eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCC-CEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEP-RRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .|.+.. + .|.+|++...    +-...++...     +++.+++|+ |++ ..|.+...+-.|.||.+.+.+... ++-
T Consensus        63 ilC~~yk~~~vqvwsl~Qp----ew~ckIdeg~-----agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~-~~~  131 (447)
T KOG4497|consen   63 ILCVAYKDPKVQVWSLVQP----EWYCKIDEGQ-----AGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYL-LPH  131 (447)
T ss_pred             eeeeeeccceEEEEEeecc----eeEEEeccCC-----CcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEE-ecc
Confidence            334444 4 9999999886    6566666665     789999999 677 556667778899999998776443 222


Q ss_pred             ccccEEEEEec-CCCeEEEEeCCC------------------------------------cEEEEEcCCCCCeeeeeccC
Q 035558           84 HDKEVYDIAWG-GVGVFASVSADG------------------------------------SVRVFDLRDKEHSTIIYESS  126 (253)
Q Consensus        84 ~~~~v~~~~~~-~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~~~~~~~  126 (253)
                      .+..+..++|+ ++++.+.++.-.                                    .+-+||---.-   .++...
T Consensus       132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley---kv~aYe  208 (447)
T KOG4497|consen  132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY---KVYAYE  208 (447)
T ss_pred             cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh---eeeeee
Confidence            23456778888 888777665421                                    12222211111   111111


Q ss_pred             CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----------------------------------------
Q 035558          127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----------------------------------------  165 (253)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----------------------------------------  165 (253)
                       ..-.+..++|+| .++++++|++|+. +++.+--+.+.                                         
T Consensus       209 -~~lG~k~v~wsP-~~qflavGsyD~~-lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  209 -RGLGLKFVEWSP-CNQFLAVGSYDQM-LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             -eccceeEEEecc-ccceEEeeccchh-hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence             113688899999 9999999999987 77654311000                                         


Q ss_pred             ----------------C--eeeec------ccccceeEEEEecCCCCeEEEecC--CCcEEEEeccCCCCCCCCCCCCee
Q 035558          166 ----------------P--VVELQ------RHQASVNAIAWAPHSSCHICTAGD--DSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       166 ----------------~--~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                                      +  +..++      .....+.-++|++|. ++++|-..  -+.+-+||++..+.-        .
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~--------a  356 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLH--------A  356 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhh--------h
Confidence                            0  01111      112346678999998 68887653  478999999986632        3


Q ss_pred             eccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ......+|....|+|..+.++.+.....+.+|.
T Consensus       357 vLiQk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  357 VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             hhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence            334567899999999999999888888888885

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=1.8e-11  Score=96.36  Aligned_cols=185  Identities=14%  Similarity=0.139  Sum_probs=125.0

Q ss_pred             CEE-EEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558           56 RRI-GTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLV  133 (253)
Q Consensus        56 ~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~  133 (253)
                      +++ ++-..++.|.+.|..+.+.+..+......-..+.++ +++++++++.||.|.++|+.+.+....+....    ...
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~   81 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPR   81 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----Ccc
Confidence            444 455678999999999999999888654444557788 99999999999999999999998655554322    567


Q ss_pred             EEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc-------ccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          134 RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH-------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      .+++++ ++++++++......+.++|.++.+ +++.+...       ...+.++..+|..+.++++.-+-+.|.+.|...
T Consensus        82 ~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   82 GIAVSP-DGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEEE---TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             eEEEcC-CCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            899999 999999888766669999999866 36655432       235677888888753555555668888888877


Q ss_pred             CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCCcEEEEE
Q 035558          207 MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFSTKLQILR  252 (253)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~vw~  252 (253)
                      .+.+.      ..............|+|++++++++ ..++.+-+++
T Consensus       160 ~~~~~------~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD  200 (369)
T PF02239_consen  160 PKNLK------VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID  200 (369)
T ss_dssp             SSCEE------EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             ccccc------eeeecccccccccccCcccceeeecccccceeEEEe
Confidence            64332      2344456678899999999987754 4556666665

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.51  E-value=1.9e-12  Score=108.14  Aligned_cols=183  Identities=16%  Similarity=0.178  Sum_probs=143.4

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeeeeecccccE-EEE---Eec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEV-YDI---AWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD  129 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~---~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  129 (253)
                      ..+++.++.+..+.+||...+.....+....... .++   -++ +.-++++|+.-+.|.+|+....+.+.   ...+|+
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~---~l~GHe  175 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI---RLKGHE  175 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc---eecccC
Confidence            4567788888899999998777666665322211 111   122 45588999999999999998444322   345889


Q ss_pred             CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          130 TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       130 ~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      +.|.++.|+. ++.++++.+.|.. +++|++.+.+.......+|+..+..++|.|+   .++++++|-+.++|+......
T Consensus       176 G~iF~i~~s~-dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l  250 (967)
T KOG0974|consen  176 GSIFSIVTSL-DGRYIASVSDDRS-IRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQL  250 (967)
T ss_pred             CceEEEEEcc-CCcEEEEEecCcc-eeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEeccccee
Confidence            9999999998 9999999999998 9999999987655577789999999999997   799999999999996554321


Q ss_pred             CCCCCCCCeeeccC-CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          210 PVEGGLDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       210 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                              ....+| ...|.+++..++....++++.|+.+++|++
T Consensus       251 --------~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  251 --------EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             --------hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence                    144455 567999999999888889999999999974

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.2e-11  Score=100.19  Aligned_cols=202  Identities=15%  Similarity=0.140  Sum_probs=124.5

Q ss_pred             CCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCCC--eEEEEeccCc
Q 035558            4 KPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSIDT--TCTIWDIERE   75 (253)
Q Consensus         4 ~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~   75 (253)
                      +++.|+..+    + .|.+|++..+    +. ..+....     +...+.+|+ ++++.|+ +.+.+|  .|++||+.++
T Consensus       214 Dg~~la~~s~~~~~~~l~~~dl~~g----~~-~~l~~~~-----g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~~g  282 (433)
T PRK04922        214 DGKKLAYVSFERGRSAIYVQDLATG----QR-ELVASFR-----GINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLGSR  282 (433)
T ss_pred             CCCEEEEEecCCCCcEEEEEECCCC----CE-EEeccCC-----CCccCceEC-CCCCEEEEEEeCCCCceEEEEECCCC
Confidence            555555544    2 7999999875    22 2222333     334578999 7887665 555555  5999999887


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEeC-CCc--EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGS--VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      +.. .+..+.......+|+ +++.++.++. +|.  |.++|+.+++... +.. .  .......+|+| +++.|+..+.+
T Consensus       283 ~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~-~--g~~~~~~~~Sp-DG~~Ia~~~~~  356 (433)
T PRK04922        283 QLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF-Q--GNYNARASVSP-DGKKIAMVHGS  356 (433)
T ss_pred             CeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec-C--CCCccCEEECC-CCCEEEEEECC
Confidence            643 344455555678999 9988887664 454  6666766655322 221 1  12344689999 88888876544


Q ss_pred             C--CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC-C--CcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558          152 S--AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD-D--SQALIWDLSSMGQPVEGGLDPILAYTAGAE  226 (253)
Q Consensus       152 ~--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (253)
                      +  ..|.+||+.+..  ...+. +........|+|+| ++++..+. .  +.|.++++.... .       ..+..+.+.
T Consensus       357 ~~~~~I~v~d~~~g~--~~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~-~-------~~l~~~~g~  424 (433)
T PRK04922        357 GGQYRIAVMDLSTGS--VRTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRV-R-------QRLVSADGE  424 (433)
T ss_pred             CCceeEEEEECCCCC--eEECC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCCc-e-------EEcccCCCC
Confidence            3  248999997654  23333 22244567999999 56655443 2  356677775432 1       233344566


Q ss_pred             eeEEEEcC
Q 035558          227 IEQLQWSS  234 (253)
Q Consensus       227 v~~~~~~~  234 (253)
                      +...+|+|
T Consensus       425 ~~~p~wsp  432 (433)
T PRK04922        425 VREPAWSP  432 (433)
T ss_pred             CCCCccCC
Confidence            77788887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=6.2e-12  Score=101.61  Aligned_cols=175  Identities=15%  Similarity=0.150  Sum_probs=110.0

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC---CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD---GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      ..|.++|.. +.....+..+...+.+.+|+ +++.|+..+.+   ..|.+||+.+++... +..   ..+.....+|+| 
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~---~~g~~~~~~~SP-  249 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN---FKGSNSAPAWSP-  249 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eec---CCCCccceEECC-
Confidence            367777774 44444455677889999999 99988877643   359999998876422 221   223556889999 


Q ss_pred             CCCEEEE-EEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558          141 DPRYMAT-IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLDPI  218 (253)
Q Consensus       141 ~~~~l~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~  218 (253)
                      +++.|+. .+.++. ..+|.+.........+..+........|+|+|. .|+ ++..+|...+|.+.......      .
T Consensus       250 DG~~la~~~~~~g~-~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~-~l~f~s~~~g~~~Iy~~~~~~g~~------~  321 (427)
T PRK02889        250 DGRTLAVALSRDGN-SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGR-SIYFTSDRGGAPQIYRMPASGGAA------Q  321 (427)
T ss_pred             CCCEEEEEEccCCC-ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCC-EEEEEecCCCCcEEEEEECCCCce------E
Confidence            8877764 455665 555554322222455555555567789999994 555 44456777788765322111      1


Q ss_pred             eeccCCCceeEEEEcCCCCceEEEEcCC---cEEEEEC
Q 035558          219 LAYTAGAEIEQLQWSSSQPDWVAIAFST---KLQILRV  253 (253)
Q Consensus       219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~vw~l  253 (253)
                      ............+|+|+|+.++..+.++   .|.+|++
T Consensus       322 ~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        322 RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence            1122223345678999999777655443   4777764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=9.8e-11  Score=94.42  Aligned_cols=196  Identities=15%  Similarity=0.127  Sum_probs=114.7

Q ss_pred             CCeeEEEecCCCCCE--E-EEEeCCC--eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC-----CCcEEEE
Q 035558           43 GPLTSFDWNEAEPRR--I-GTSSIDT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA-----DGSVRVF  111 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~--l-~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i~i~  111 (253)
                      ..+.+-+|+ |+++.  + ++...+|  .|.+.++.+++... +....+.....+|+ +++.|+..+.     +..+..|
T Consensus       185 ~~~~sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        185 SLSITPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCcccceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            445677899 78764  2 2444443  58888888775333 22234445568999 9988876553     3334557


Q ss_pred             EcCCCC--CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCC-eEEEEECCCCCCCeeeecccccceeEEEEecCCC
Q 035558          112 DLRDKE--HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS  187 (253)
Q Consensus       112 d~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  187 (253)
                      ++..+.  ....+..  .........+|+| +++.|+..+. ++. .|.++++.........+..+...+....|+|+| 
T Consensus       263 ~~~~g~~g~~~~lt~--~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG-  338 (428)
T PRK01029        263 SLETGAIGKPRRLLN--EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG-  338 (428)
T ss_pred             ecccCCCCcceEeec--CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC-
Confidence            776531  2222222  1112345689999 8887776654 443 244445542222234444445567789999999 


Q ss_pred             CeEEEec-CC--CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc-C--CcEEEEE
Q 035558          188 CHICTAG-DD--SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF-S--TKLQILR  252 (253)
Q Consensus       188 ~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~vw~  252 (253)
                      +.|+..+ .+  ..|.+||+.+++..        .+......+....|+|+++.++..+. .  ..+.+++
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~--------~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDY--------QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeE--------EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            4665544 33  46899999876532        22222345677899999987764332 2  3455554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=5.9e-11  Score=93.48  Aligned_cols=182  Identities=13%  Similarity=0.122  Sum_probs=125.0

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW   93 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~   93 (253)
                      .|.+.|..+.    +.+..+....     ..-..+.|+ ++++++++++.||.|.++|+.+.+.+.+++.- .....+++
T Consensus        17 ~v~viD~~t~----~~~~~i~~~~-----~~h~~~~~s-~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~   85 (369)
T PF02239_consen   17 SVAVIDGATN----KVVARIPTGG-----APHAGLKFS-PDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAV   85 (369)
T ss_dssp             EEEEEETTT-----SEEEEEE-ST-----TEEEEEE-T-T-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE
T ss_pred             EEEEEECCCC----eEEEEEcCCC-----CceeEEEec-CCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEE
Confidence            9999999886    7788887654     333456788 89999999999999999999999999888853 45678999


Q ss_pred             c-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccC----CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe
Q 035558           94 G-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESS----EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV  167 (253)
Q Consensus        94 ~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~  167 (253)
                      + ++++++++. ..+.+.++|.++.+..+.+....    ..+..+..+..+| ....+++.-.+...|.+.|........
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccc
Confidence            9 999888765 68999999999988666554321    1345677888888 666666666665559888987765433


Q ss_pred             eeecccccceeEEEEecCCCCeE-EEecCCCcEEEEeccCCC
Q 035558          168 VELQRHQASVNAIAWAPHSSCHI-CTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       168 ~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~  208 (253)
                      .....-........|+|++ +++ ++...++.|.++|.++.+
T Consensus       165 ~~~i~~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTE
T ss_pred             eeeecccccccccccCccc-ceeeecccccceeEEEeeccce
Confidence            3333344567889999999 555 445667788899887764

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=5.3e-11  Score=96.65  Aligned_cols=183  Identities=13%  Similarity=0.125  Sum_probs=109.3

Q ss_pred             CCeeEEEecCCCCCEEEEEeC-CC--eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEE-EeCCCc--EEEEEcCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSI-DT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFAS-VSADGS--VRVFDLRD  115 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~dg~--i~i~d~~~  115 (253)
                      ..+.+..|+ |+++.|+..+. ++  .|++||+.+++... +....+.....+|+ +++.|+. .+.+|.  |.++|+.+
T Consensus       218 ~~~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t  295 (448)
T PRK04792        218 EPLMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT  295 (448)
T ss_pred             CcccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence            578899999 88988876643 22  68899998776432 22223334567999 8887764 566665  77778877


Q ss_pred             CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-CC-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          116 KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-SA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       116 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      ++... +   ..+.......+|+| +++.|+..+.. +. .|+++|+.+++  ...+..........+|+|+|. +|+..
T Consensus       296 g~~~~-l---t~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~-~l~~~  367 (448)
T PRK04792        296 KALTR-I---TRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGK--VSRLTFEGEQNLGGSITPDGR-SMIMV  367 (448)
T ss_pred             CCeEE-C---ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEEEecCCCCCcCeeECCCCC-EEEEE
Confidence            65322 2   12223556789999 88877766543 22 36667776544  333322222334579999995 66544


Q ss_pred             c-CCCc--EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          194 G-DDSQ--ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       194 ~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                      + .++.  |.++|+.++...        .+... .......|+|+++.++....
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~--------~lt~~-~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQ--------VLTST-RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             EecCCceEEEEEECCCCCeE--------EccCC-CCCCCceECCCCCEEEEEEe
Confidence            4 4454  445666655421        11111 11224479999987764443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=4.3e-13  Score=117.56  Aligned_cols=185  Identities=14%  Similarity=0.175  Sum_probs=142.8

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      ..|.++.=+ |...+.++|+.||.|++|.-..++.+..++ .-+..|+.+.|+ .|+.+..+..||.+.+|...    ++
T Consensus      2209 ~~v~r~~sH-p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSH-PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----PK 2283 (2439)
T ss_pred             CceeeecCC-CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC----Cc
Confidence            456666667 667788999999999999998888777776 234889999999 99999999999999999887    23


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEe--CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIM--DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      +......|+.....+.|--   ..+++++.  |++.+.+||.-.....-..-.+|.+.++++++-|.. ++|++|+.+|.
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGRKGE 2359 (2439)
T ss_pred             ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCCcCc
Confidence            4555566777788888853   56666653  444599999865442222227899999999999998 79999999999


Q ss_pred             EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          199 ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |++||++..+..            |.-+.    ++ ...++++++..|.++||++
T Consensus      2360 v~l~D~rqrql~------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLR------------HTFQA----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             EEEeehHHHHHH------------HHhhh----hh-hhheeeccCcccceEEEEc
Confidence            999999875422            21121    55 4557889999999999986

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.45  E-value=1.1e-12  Score=114.98  Aligned_cols=181  Identities=18%  Similarity=0.237  Sum_probs=141.8

Q ss_pred             CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      |.+.-||..++| .|++|....+    +.+..++.-..    +.|+.+.|+ ..|+.+..+..||.+.+|... .+....
T Consensus      2218 p~~~~Yltgs~dgsv~~~~w~~~----~~v~~~rt~g~----s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHG----QQVVCFRTAGN----SRVTRSRFN-HQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred             CCCceEEecCCCceEEEEeccCC----CeEEEeeccCc----chhhhhhhc-ccCCceeeeccCCceeecccC-Ccceec
Confidence            556666666667 9999999886    55555543322    679999999 899999999999999999987 667777


Q ss_pred             eecccccEEEEEecCCCeEEEEe---CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           81 LIAHDKEVYDIAWGGVGVFASVS---ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+.|.....+..|- +..+++++   .++.+.+||..-......+.  ..|.+.++++++-| ..++|++|+.+|- |++
T Consensus      2288 ~qchnk~~~Df~Fi-~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~-v~l 2362 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFI-GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGE-VCL 2362 (2439)
T ss_pred             cccCCccccceeee-ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCCcCc-EEE
Confidence            88899999998886 46667664   47889999987654333333  67788999999999 8999999999999 999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      ||++..+. ++.++.         +. .. .++++|+..|.++||++.....
T Consensus      2363 ~D~rqrql-~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2363 FDIRQRQL-RHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             eehHHHHH-HHHhhh---------hh-hh-heeeccCcccceEEEEccccch
Confidence            99987543 444443         44 33 4899999999999999988753

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=5.8e-11  Score=93.43  Aligned_cols=110  Identities=20%  Similarity=0.352  Sum_probs=78.8

Q ss_pred             CCCCeeEEEeeCCCCCEEE-EEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC---CCcEEEEe
Q 035558          128 PDTPLVRLGWNKQDPRYMA-TIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD---DSQALIWD  203 (253)
Q Consensus       128 ~~~~i~~~~~~~~~~~~l~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~iwd  203 (253)
                      .+++|.++.|+| +++.++ +-|.--..+.+||++-  .++..+.  +++-+++-|+|.| ++++.++-   -|.|-|||
T Consensus       269 k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~--~~v~df~--egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  269 KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC--CEeEeCC--CCCccceEECCCC-CEEEEeecCCCCCceEEEe
Confidence            367999999999 565444 4444444499999984  2355554  5778899999999 67777664   58999999


Q ss_pred             ccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc------CCcEEEEE
Q 035558          204 LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF------STKLQILR  252 (253)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i~vw~  252 (253)
                      +.+.+...         .-....-+-+.|+|+|++++++..      |+.++||+
T Consensus       343 v~n~K~i~---------~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  343 VPNRKLIA---------KFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             ccchhhcc---------ccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            99955332         112234456789999999996544      57888887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=8e-11  Score=95.58  Aligned_cols=171  Identities=13%  Similarity=0.116  Sum_probs=114.0

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC---CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      ..|.++|... .....+..+...+...+|+ +++.|+..+.   +..|.+||+.+++.. .+.   ...+.+...+|+| 
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~---~~~g~~~~~~~SP-  255 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG---NFPGMTFAPRFSP-  255 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee---cCCCcccCcEECC-
Confidence            3788999864 4445566678899999999 9998887764   468999999887632 222   2233667889999 


Q ss_pred             CCCEEEEE-EeCCC-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCC--cEEEEeccCCCCCCCCCC
Q 035558          141 DPRYMATI-IMDSA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDS--QALIWDLSSMGQPVEGGL  215 (253)
Q Consensus       141 ~~~~l~~~-~~~~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~  215 (253)
                      +++.|+.. +.++. .|++||+.+..  ...+..+........|+|+| +.|+..+ .+|  .|.++|+..+..      
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~------  326 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP------  326 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe------
Confidence            88776544 44432 37777887654  45566566667789999999 4666554 444  577777665432      


Q ss_pred             CCeeeccCCCceeEEEEcCCCCceEEEEcCC---cEEEEE
Q 035558          216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFST---KLQILR  252 (253)
Q Consensus       216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~vw~  252 (253)
                        ..+..+...+....|+|+|+.++....++   .+.+|+
T Consensus       327 --~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d  364 (435)
T PRK05137        327 --RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMK  364 (435)
T ss_pred             --EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEE
Confidence              12222345567789999999777655432   355554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=4e-11  Score=89.11  Aligned_cols=191  Identities=14%  Similarity=0.208  Sum_probs=135.8

Q ss_pred             ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      ..|..+-+  ++.-+.+...-+.....+....|.     ..+..+-|+ ....++++.+.|..+.---.+.+..+..+. 
T Consensus        81 ~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~-----~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-  153 (404)
T KOG1409|consen   81 RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ-----ARVSAIVFS-LTHEWVLSTGKDKQFAWHCTESGNRLGGYN-  153 (404)
T ss_pred             eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh-----cceeeEEec-CCceeEEEeccccceEEEeeccCCcccceE-
Confidence            34455544  566565544333345566677787     899999999 778899999999776544445444333222 


Q ss_pred             ccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558           84 HDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP  163 (253)
Q Consensus        84 ~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  163 (253)
                      -....+++.+. -.+...|...|.|.+..+..... ..+....++...+.+++|.| ....+.++..|.. +.+||+...
T Consensus       154 ~~~~~t~~~~d-~~~~fvGd~~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~-vi~wdigg~  229 (404)
T KOG1409|consen  154 FETPASALQFD-ALYAFVGDHSGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHS-VIMWDIGGR  229 (404)
T ss_pred             eeccCCCCcee-eEEEEecccccceEEEEEeecCC-ceEEEEcCcccceEEEEEcC-CCcEEEeccccCc-eEEEeccCC
Confidence            11122223332 11555666677777777765543 35566678888999999999 8889999998888 999999877


Q ss_pred             CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .....++.+|...|..+...+.- +.|++++.||.|.+|++....
T Consensus       230 ~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  230 KGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             cceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence            76678889999999999888876 699999999999999987543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.41  E-value=9.2e-10  Score=97.50  Aligned_cols=243  Identities=10%  Similarity=0.079  Sum_probs=146.1

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCc---------cccCCeeEEEecCCCCCEEEEE-eCCCeEEE
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNS---------EYCGPLTSFDWNEAEPRRIGTS-SIDTTCTI   69 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~v   69 (253)
                      +.+++++++-..  .|+++|...     .....+.+-...         ..-.....+++. ++++.|+.+ ..++.|++
T Consensus       577 ~~~g~lyVaDs~n~rI~v~d~~G-----~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        577 LLNNRLFISDSNHNRIVVTDLDG-----NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLYVADTENHALRE  650 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEeCCC-----CEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEEEEeCCCceEEE
Confidence            345667776554  899999875     323222220000         000235688998 666655554 45578999


Q ss_pred             EeccCceeeeeeecc-----------------cccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeec-----c
Q 035558           70 WDIEREAVDTQLIAH-----------------DKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYE-----S  125 (253)
Q Consensus        70 wd~~~~~~~~~~~~~-----------------~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~  125 (253)
                      +|+.++. +.++.+-                 -.....++++  ++.++++...++.|++||..++........     .
T Consensus       651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            9987654 3222110                 1134678888  456677777889999999877642111100     0


Q ss_pred             CC------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCee------------eeccc--------ccceeE
Q 035558          126 SE------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVV------------ELQRH--------QASVNA  179 (253)
Q Consensus       126 ~~------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~------------~~~~~--------~~~i~~  179 (253)
                      ..      .-.....++++| +++.|+++...+..|++||+.+....+.            .+...        -....+
T Consensus       730 ~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence            00      012456799999 7776666555544599999886432110            01000        113468


Q ss_pred             EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC------CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD------PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++++++| .++++-+.+++|++||..++.........      -............++++++|+.+++-+.++.|++|++
T Consensus       809 vavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        809 VLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            9999999 58888889999999999765422100000      0001122346789999999987778888999999985

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.41  E-value=2.1e-09  Score=84.67  Aligned_cols=232  Identities=13%  Similarity=0.131  Sum_probs=144.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC----CCeEEEEeccCc--e--eeeeeeccc
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI----DTTCTIWDIERE--A--VDTQLIAHD   85 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~--~--~~~~~~~~~   85 (253)
                      .|.+|+++.....+........-      ....-++++ +++++|.+...    ++.|..|++...  +  .+.......
T Consensus        14 gI~~~~~d~~~g~l~~~~~~~~~------~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g   86 (345)
T PF10282_consen   14 GIYVFRFDEETGTLTLVQTVAEG------ENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG   86 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEES------SSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred             cEEEEEEcCCCCCceEeeeecCC------CCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC
Confidence            78999985543445545544332      345678898 78888888876    568999988764  2  333333334


Q ss_pred             ccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeee---ecc--------CCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558           86 KEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTII---YES--------SEPDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus        86 ~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      .....++++ ++++++++. .+|.|.++++.....+...   ...        ........++.|+| +++++++.....
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~  165 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA  165 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence            556778998 888888876 4899999999875322221   100        11223678899999 888888877655


Q ss_pred             CeEEEEECCCCCCCeee---ec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee---eccCCC
Q 035558          153 AKVVVLDIRFPTLPVVE---LQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL---AYTAGA  225 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~  225 (253)
                      ..|.+|++......+..   +. ........++|+|++....++.-.++.|.++++...............   ......
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN  245 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence            56999999875522322   21 234567889999999534455667899999999833211100000000   011223


Q ss_pred             ceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          226 EIEQLQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       226 ~v~~~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      ....|+++|++++++++. ..+.|.+|++
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            688999999999777554 5667888764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.40  E-value=1.1e-11  Score=88.68  Aligned_cols=150  Identities=15%  Similarity=0.192  Sum_probs=100.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeccCce-eeeeeecccccEEEEEec-CCCeEEEEe-----CCCcEEEEEcCCCCCeeeeecc
Q 035558           53 AEPRRIGTSSIDTTCTIWDIEREA-VDTQLIAHDKEVYDIAWG-GVGVFASVS-----ADGSVRVFDLRDKEHSTIIYES  125 (253)
Q Consensus        53 ~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~  125 (253)
                      -.++.++++..||.+.+.+.+... ....+..-...-.+.++. .++.+.++.     .-+..+.|+++..+.   +...
T Consensus        99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~~  175 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT---LIPS  175 (319)
T ss_pred             ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc---cccc
Confidence            346779999999999999876521 111111111111122222 344443332     223466676665542   2111


Q ss_pred             CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558          126 SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS  205 (253)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~  205 (253)
                      ......|.+++-+|....++++|+.+|. +.+||.|+...|...+..|+.+++.+.|+|..+..|+++++||.+.-||..
T Consensus       176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  176 KKALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ccccccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            2222359999999955566666666666 999999998888888999999999999999888899999999999999987


Q ss_pred             C
Q 035558          206 S  206 (253)
Q Consensus       206 ~  206 (253)
                      +
T Consensus       255 ~  255 (319)
T KOG4714|consen  255 T  255 (319)
T ss_pred             C
Confidence            4

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=2.7e-11  Score=89.10  Aligned_cols=238  Identities=13%  Similarity=0.185  Sum_probs=156.8

Q ss_pred             CCceEEeecC--cEEEEEccCC-ccccceeeeecCCCCc-------cccCCeeEEEecCCC-CCEEEEEeCCCeEEEEec
Q 035558            4 KPDLLATSSD--FLRVWRISDE-DRRVELKSLLNGNKNS-------EYCGPLTSFDWNEAE-PRRIGTSSIDTTCTIWDI   72 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~-~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~   72 (253)
                      .|.+|++|..  .|.+|.-... ..+++....+++|...       +....|..+.|..+. ...++..+.|.+|++|.+
T Consensus        37 tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKi  116 (460)
T COG5170          37 TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKI  116 (460)
T ss_pred             ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeee
Confidence            5788999984  8888876543 1334555667777621       122467888887433 345666678999999987


Q ss_pred             cCce-------------------------------------ee-----eee-ecccccEEEEEec-CCCeEEEEeCCCcE
Q 035558           73 EREA-------------------------------------VD-----TQL-IAHDKEVYDIAWG-GVGVFASVSADGSV  108 (253)
Q Consensus        73 ~~~~-------------------------------------~~-----~~~-~~~~~~v~~~~~~-~~~~l~~~~~dg~i  108 (253)
                      ....                                     .+     +.. ..|.--|.++.++ +...++++ .|-.|
T Consensus       117 yeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrI  195 (460)
T COG5170         117 YEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRI  195 (460)
T ss_pred             ecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceee
Confidence            5420                                     00     011 3567778899999 77777664 57789


Q ss_pred             EEEEcCCCCCeeeeeccCCCC-----CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe-----ee---------
Q 035558          109 RVFDLRDKEHSTIIYESSEPD-----TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-----VE---------  169 (253)
Q Consensus       109 ~i~d~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-----~~---------  169 (253)
                      .+|++.-....-.+.....+.     ..|++..|+|...+.+.-.+..|. |++-|+|....+.     ..         
T Consensus       196 NLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~alcdn~~klfe~~~D~v~~~  274 (460)
T COG5170         196 NLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQSALCDNSKKLFELTIDGVDVD  274 (460)
T ss_pred             eeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhhhhccCchhhhhhccCcccch
Confidence            999988665333333222222     268899999977888888888888 9999999543211     11         


Q ss_pred             -ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC------------CCce---eEEEEc
Q 035558          170 -LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA------------GAEI---EQLQWS  233 (253)
Q Consensus       170 -~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~~v---~~~~~~  233 (253)
                       +.+-...|..+.|+++| +++++-+. -++++||++..+.|.      ....-|            ...|   ..+.|+
T Consensus       275 ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~pi------kTi~~h~~l~~~l~d~YEnDaifdkFeisfS  346 (460)
T COG5170         275 FFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKNPI------KTIPMHCDLMDELNDVYENDAIFDKFEISFS  346 (460)
T ss_pred             hHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccCCc------eeechHHHHHHHHHhhhhccceeeeEEEEec
Confidence             11223468889999999 68877664 689999999888765      121111            2222   357788


Q ss_pred             CCCCceEEEEcCCcEEEE
Q 035558          234 SSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       234 ~~~~~~~~~~~~~~i~vw  251 (253)
                      -+.+.+++++..+..-++
T Consensus       347 gd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         347 GDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             CCcccccccccccceeee
Confidence            888888888877766554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=6e-10  Score=89.91  Aligned_cols=197  Identities=13%  Similarity=0.129  Sum_probs=115.9

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CC----eEEEEeccCc---eeeeeeeccc
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DT----TCTIWDIERE---AVDTQLIAHD   85 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~---~~~~~~~~~~   85 (253)
                      .|.+.++..+  ..+.+..+.        +.....+|+ |+++.|+..+. +|    .+..|++..+   +.........
T Consensus       212 ~I~~~~l~~g--~~~~lt~~~--------g~~~~p~wS-PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~  280 (428)
T PRK01029        212 KIFLGSLENP--AGKKILALQ--------GNQLMPTFS-PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF  280 (428)
T ss_pred             eEEEEECCCC--CceEeecCC--------CCccceEEC-CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence            7888888764  112222233        334467899 88988776542 23    3444676642   2222222222


Q ss_pred             ccEEEEEec-CCCeEEEEe-CCCcEEEEE--cCCC-CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEE
Q 035558           86 KEVYDIAWG-GVGVFASVS-ADGSVRVFD--LRDK-EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVL  158 (253)
Q Consensus        86 ~~v~~~~~~-~~~~l~~~~-~dg~i~i~d--~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~  158 (253)
                      ......+|+ +++.|+..+ .+|...+|.  +... .....+.   .....+....|+| +++.|+..+.++  ..|.+|
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~  356 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVY  356 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEE
Confidence            344677999 998777665 467655554  4321 2122222   2223567889999 888888766542  248999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEE-EecC--CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC-TAGD--DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      |+.+++  ...+......+....|+|+|. .|+ ++..  ...|.++|+..++..        .+....+.+...+|+|.
T Consensus       357 dl~~g~--~~~Lt~~~~~~~~p~wSpDG~-~L~f~~~~~g~~~L~~vdl~~g~~~--------~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        357 DLATGR--DYQLTTSPENKESPSWAIDSL-HLVYSAGNSNESELYLISLITKKTR--------KIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             ECCCCC--eEEccCCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCCEE--------EeecCCCcccCceecCC
Confidence            998765  334433334567899999994 554 4443  356778888765422        23334455677889875


Q ss_pred             C
Q 035558          236 Q  236 (253)
Q Consensus       236 ~  236 (253)
                      .
T Consensus       426 ~  426 (428)
T PRK01029        426 P  426 (428)
T ss_pred             C
Confidence            4

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.38  E-value=4.1e-10  Score=81.27  Aligned_cols=223  Identities=9%  Similarity=0.049  Sum_probs=143.5

Q ss_pred             ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCee---EEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT---SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .+||.|+.  .+.+|...+.+   ........|.     ..|+   ..+   .....+..++.|.++++.+++.+.....
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~---~h~~~cd~sn-----n~v~~~~r~c---d~~~~~~i~sndht~k~~~~~~~s~~~~  153 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTND---GHLYQCDVSN-----NDVTLVKRYC---DLKFPLNIASNDHTGKTMVVSGDSNKFA  153 (344)
T ss_pred             cEEEeccccceeeeecccCcc---cceeeecccc-----cchhhhhhhc---ccccceeeccCCcceeEEEEecCcccce
Confidence            45677654  99999988641   2233333333     1121   111   1223456678899999998876543333


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.-..-.+.+++++ +++++++.+....|..|.+...............+..-.+..|+. ....+|++..||. +.|||
T Consensus       154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~-~~I~D  231 (344)
T KOG4532|consen  154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGT-CAIYD  231 (344)
T ss_pred             eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCc-EEEEE
Confidence            22112337888999 999999999999999999986643222211122233556788988 8889999999999 99999


Q ss_pred             CCCCCCCeeee----cccccceeEEEEecCCCC-eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc-eeEEEEc
Q 035558          160 IRFPTLPVVEL----QRHQASVNAIAWAPHSSC-HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE-IEQLQWS  233 (253)
Q Consensus       160 ~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~  233 (253)
                      +|....|....    ..|.+.+..+.|++-|.- +|+..-.-+.+.+.|+++...-......+...+.|... |..-.|+
T Consensus       232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~  311 (344)
T KOG4532|consen  232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN  311 (344)
T ss_pred             ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence            99877654432    358899999999986643 44444456889999999987433211222233445444 7777787


Q ss_pred             CCCCceEE
Q 035558          234 SSQPDWVA  241 (253)
Q Consensus       234 ~~~~~~~~  241 (253)
                      .++....+
T Consensus       312 ~~n~s~~v  319 (344)
T KOG4532|consen  312 NENESNDV  319 (344)
T ss_pred             CCCccccc
Confidence            77654443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.37  E-value=6.1e-09  Score=76.07  Aligned_cols=225  Identities=11%  Similarity=0.081  Sum_probs=133.7

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++|++||...| .|.|-.....  -...+...+.+++..  -.-..++|+ +++.+||.+...|+|+++|+...+ +..+
T Consensus         7 ~~Gk~lAi~qd~~iEiRsa~Dd--f~si~~kcqVpkD~~--PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    7 SDGKLLAILQDQCIEIRSAKDD--FSSIIGKCQVPKDPN--PQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             CCCcEEEEEeccEEEEEeccCC--chheeEEEecCCCCC--chheEEEEC-CCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            68899999998 8888776653  112333333333111  356789999 999999999999999999998544 2233


Q ss_pred             ec-------ccccEEEEEec--C-----CCeEEEEeCCCcEEEEEcCCC--C---CeeeeeccCCCCCCeeEEEeeCCCC
Q 035558           82 IA-------HDKEVYDIAWG--G-----VGVFASVSADGSVRVFDLRDK--E---HSTIIYESSEPDTPLVRLGWNKQDP  142 (253)
Q Consensus        82 ~~-------~~~~v~~~~~~--~-----~~~l~~~~~dg~i~i~d~~~~--~---~~~~~~~~~~~~~~i~~~~~~~~~~  142 (253)
                      ..       -...|..|.|.  .     ...|+.-..+|.++-|-+..+  +   ....+.........|.++.++| ..
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h  159 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KH  159 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CC
Confidence            21       23567777776  2     225677778888888776332  2   1122222233455899999999 66


Q ss_pred             CEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeE-EEecCCCcE------EEEeccCCCCCCCCCC
Q 035558          143 RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHI-CTAGDDSQA------LIWDLSSMGQPVEGGL  215 (253)
Q Consensus       143 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i------~iwd~~~~~~~~~~~~  215 (253)
                      ++|++||....       +  .. .  -.+-...+++-..-.+.+.+. ++...|+..      .+|.+-+...-     
T Consensus       160 ~LLlVgG~~~~-------~--~~-~--s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f-----  222 (282)
T PF15492_consen  160 RLLLVGGCEQN-------Q--DG-M--SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF-----  222 (282)
T ss_pred             CEEEEeccCCC-------C--Cc-c--ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeee-----
Confidence            77777765433       0  00 0  011122333333333333222 222222211      22322221100     


Q ss_pred             CCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                        .........|..+..||+|+.|++...+|.|.+|++
T Consensus       223 --s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  223 --SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             --eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence              011234678999999999999999999999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=6.4e-10  Score=90.36  Aligned_cols=203  Identities=13%  Similarity=0.176  Sum_probs=119.5

Q ss_pred             CCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCCC--eEEEEeccCc
Q 035558            4 KPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSIDT--TCTIWDIERE   75 (253)
Q Consensus         4 ~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~   75 (253)
                      +++.|+..+    . .|.+|++.++    +.. .+....     +.+...+|+ |+++.|+ +.+.+|  .|++||+.++
T Consensus       209 DG~~la~~s~~~~~~~l~~~~l~~g----~~~-~l~~~~-----g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~  277 (430)
T PRK00178        209 DGKRIAYVSFEQKRPRIFVQNLDTG----RRE-QITNFE-----GLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASR  277 (430)
T ss_pred             CCCEEEEEEcCCCCCEEEEEECCCC----CEE-EccCCC-----CCcCCeEEC-CCCCEEEEEEccCCCceEEEEECCCC
Confidence            455555433    2 6889999875    222 222222     334568899 7888776 444455  6888899877


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEeC-CC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      +.. .+..+........|+ +++.++..+. +|  .|.++|+.+++.......  .  .......|+| +++.++..+..
T Consensus       278 ~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~--~~~~~~~~Sp-dg~~i~~~~~~  351 (430)
T PRK00178        278 QLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--G--NYNARPRLSA-DGKTLVMVHRQ  351 (430)
T ss_pred             CeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--C--CCccceEECC-CCCEEEEEEcc
Confidence            643 344455556678899 8887776654 33  477778777653222211  1  1334578999 88888877654


Q ss_pred             CC--eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE-ecCCCc--EEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558          152 SA--KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT-AGDDSQ--ALIWDLSSMGQPVEGGLDPILAYTAGAE  226 (253)
Q Consensus       152 ~~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (253)
                      ++  .|.++|+.++.  ...+.. ........|+|+|. .++. ...++.  |.++++.....        ..+..+.+.
T Consensus       352 ~~~~~l~~~dl~tg~--~~~lt~-~~~~~~p~~spdg~-~i~~~~~~~g~~~l~~~~~~g~~~--------~~l~~~~g~  419 (430)
T PRK00178        352 DGNFHVAAQDLQRGS--VRILTD-TSLDESPSVAPNGT-MLIYATRQQGRGVLMLVSINGRVR--------LPLPTAQGE  419 (430)
T ss_pred             CCceEEEEEECCCCC--EEEccC-CCCCCCceECCCCC-EEEEEEecCCceEEEEEECCCCce--------EECcCCCCC
Confidence            32  37888988754  233322 22223568999994 5554 444444  55555543221        123334556


Q ss_pred             eeEEEEcCC
Q 035558          227 IEQLQWSSS  235 (253)
Q Consensus       227 v~~~~~~~~  235 (253)
                      +...+|+|-
T Consensus       420 ~~~p~ws~~  428 (430)
T PRK00178        420 VREPSWSPY  428 (430)
T ss_pred             cCCCccCCC
Confidence            777888874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.4e-08  Score=76.46  Aligned_cols=228  Identities=12%  Similarity=0.141  Sum_probs=146.2

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccC-ceeee--eeeccccc--
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIER-EAVDT--QLIAHDKE--   87 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~--~~~~~~~~--   87 (253)
                      .|-.|.++..+..+..+.......     .+-+.++++ +++++++++. ..|.|.++-++. |.+..  .+..|.+.  
T Consensus        65 gvaay~iD~~~G~Lt~ln~~~~~g-----~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p  138 (346)
T COG2706          65 GVAAYRIDPDDGRLTFLNRQTLPG-----SPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP  138 (346)
T ss_pred             cEEEEEEcCCCCeEEEeeccccCC-----CCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence            666676665323333333222222     344789999 8898988886 457899998865 33221  12235444  


Q ss_pred             --------EEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           88 --------VYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        88 --------v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                              +....+. +++++++... -..|.+|++..+................+.|.|+| ++++..+...=.++|.+
T Consensus       139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v  217 (346)
T COG2706         139 HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDV  217 (346)
T ss_pred             CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEE
Confidence                    7788888 8888887753 34699999996653222222223445788999999 99988887776666999


Q ss_pred             EECCCCCCCeeeeccc---------ccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          158 LDIRFPTLPVVELQRH---------QASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      |........+..++.+         ......+..+|+| ++|.++. ....|.+|.+.......   ........+....
T Consensus       218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L---~~~~~~~teg~~P  293 (346)
T COG2706         218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKL---ELVGITPTEGQFP  293 (346)
T ss_pred             EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEE---EEEEEeccCCcCC
Confidence            9988743223333322         2356778999999 6887776 35588899887654322   0011222345557


Q ss_pred             eEEEEcCCCCceEEEEcC-CcEEEEE
Q 035558          228 EQLQWSSSQPDWVAIAFS-TKLQILR  252 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~-~~i~vw~  252 (253)
                      +...++|.+++|+++..+ +.+.+++
T Consensus       294 R~F~i~~~g~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         294 RDFNINPSGRFLIAANQKSDNITVFE  319 (346)
T ss_pred             ccceeCCCCCEEEEEccCCCcEEEEE
Confidence            899999999988877654 5577765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.34  E-value=8.1e-09  Score=77.67  Aligned_cols=228  Identities=12%  Similarity=0.115  Sum_probs=143.7

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---CeEEEEeccC--ceee--eeeecccc
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---TTCTIWDIER--EAVD--TQLIAHDK   86 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~--~~~~--~~~~~~~~   86 (253)
                      .|++|++++.............-      +..+-++|+ ++.+.|.++-.+   |.|-.|.+..  |+..  ........
T Consensus        17 gI~v~~ld~~~g~l~~~~~v~~~------~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~   89 (346)
T COG2706          17 GIYVFNLDTKTGELSLLQLVAEL------GNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS   89 (346)
T ss_pred             ceEEEEEeCcccccchhhhcccc------CCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence            89999998643333333333322      567889999 888888887554   6676666653  4422  22222233


Q ss_pred             cEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCC----------CeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           87 EVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDT----------PLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        87 ~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      +.+.++++ ++++++++.. -|.|.++-++....+........|.+          .+....+.| +++++++..-.--.
T Consensus        90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dr  168 (346)
T COG2706          90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDR  168 (346)
T ss_pred             CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCce
Confidence            44888999 8988888765 68899999976432222111111111          277889999 89888887654434


Q ss_pred             EEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCC----CCCCCCeeeccCCCc
Q 035558          155 VVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPV----EGGLDPILAYTAGAE  226 (253)
Q Consensus       155 i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~  226 (253)
                      |.+|++..+...   ...+ .-......|.|+|++ ++..... .+++|.+|.........    .....| .-+.....
T Consensus       169 i~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP-~dF~g~~~  245 (346)
T COG2706         169 IFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP-EDFTGTNW  245 (346)
T ss_pred             EEEEEcccCcccccccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc-cccCCCCc
Confidence            999999865421   1122 234456889999999 5766555 69999999998753211    111112 22334667


Q ss_pred             eeEEEEcCCCCceEEEEcC-CcEEEEE
Q 035558          227 IEQLQWSSSQPDWVAIAFS-TKLQILR  252 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~-~~i~vw~  252 (253)
                      ...|..+|+|++|.++... +.|-+++
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f~  272 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVFS  272 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            8899999999977665432 3444443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.33  E-value=6.6e-10  Score=89.99  Aligned_cols=171  Identities=13%  Similarity=0.140  Sum_probs=111.2

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC---CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD---GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      ..|.++|..... ...+..+...+...+|+ +++.++.+..+   ..|++||+.+++.... .   ...+.+..++|+| 
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~---~~~~~~~~~~~sp-  243 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-A---SFPGMNGAPAFSP-  243 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-e---cCCCCccceEECC-
Confidence            368888876443 44455566778899999 99998887654   4799999988753222 1   2223566789999 


Q ss_pred             CCCEEEEE-EeCC-CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCC--cEEEEeccCCCCCCCCCC
Q 035558          141 DPRYMATI-IMDS-AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDS--QALIWDLSSMGQPVEGGL  215 (253)
Q Consensus       141 ~~~~l~~~-~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~  215 (253)
                      +++.|+.. +.++ ..|++||+.+..  ...+..+........|+|++. .|+..+ .++  .|.++|+.+.+.      
T Consensus       244 Dg~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~~------  314 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGEV------  314 (417)
T ss_pred             CCCEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCCE------
Confidence            77766644 3332 238888987643  444554555556789999994 665444 444  466667665431      


Q ss_pred             CCeeeccCCCceeEEEEcCCCCceEEEEcCC---cEEEEE
Q 035558          216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFST---KLQILR  252 (253)
Q Consensus       216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~vw~  252 (253)
                        ..+..+......+.|+|+++.++..+.++   .|.+|+
T Consensus       315 --~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d  352 (417)
T TIGR02800       315 --RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD  352 (417)
T ss_pred             --EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence              12333455677889999998777666654   566665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.31  E-value=1.5e-10  Score=96.06  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=136.6

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +..+..|+ . .+-.+|+++.    +..+...-..     ..|+-++   .+++.+++|...|+|.+-|.++.+.++++.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~----~e~r~~~v~a-----~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~  214 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTE----KETRTTNVSA-----SGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHTFD  214 (1118)
T ss_pred             Ccceeecchhhheeeeecccc----eeeeeeeccC-----CceEEEE---ecCcEEEeecccceEEeecCCcCceeeeee
Confidence            44555555 3 7777888775    4444433332     3465555   458999999999999999999999999999


Q ss_pred             cccccEEEEEecCCCeEEEEeC---------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           83 AHDKEVYDIAWGGVGVFASVSA---------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        83 ~~~~~v~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      +|.+.|.++.. .|++|++|+.         |..|++||+|+.+...++....+    ..-+.|+|.-...+++++..|.
T Consensus       215 aHs~siSDfDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~----P~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  215 AHSGSISDFDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG----PQFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             ccccceeeeec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC----chhhhhcccccceEEEEecccc
Confidence            99999987666 5889999875         56689999999875555543332    2567899977888999999998


Q ss_pred             eEEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEe
Q 035558          154 KVVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD  203 (253)
Q Consensus       154 ~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd  203 (253)
                       ..+.|..+...|   +..+......+.++++++++ ..++.|..+|.|.+|.
T Consensus       290 -~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 -FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             -eeeccccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence             999994443333   44444455669999999999 6999999999999997

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=6.4e-12  Score=99.12  Aligned_cols=168  Identities=20%  Similarity=0.195  Sum_probs=120.4

Q ss_pred             eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-------eeeeeeecccccEEEEEec-CCCeEEE
Q 035558           30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-------AVDTQLIAHDKEVYDIAWG-GVGVFAS  101 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~-~~~~l~~  101 (253)
                      +..+.+|.     ..|..++-- .+.+.+++++.|.+|++|.++..       .+..+++.|+.+|.++.|. +.+.+++
T Consensus       728 L~nf~GH~-----~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S  801 (1034)
T KOG4190|consen  728 LCNFTGHQ-----EKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS  801 (1034)
T ss_pred             eecccCcH-----HHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee
Confidence            45677887     777777665 67888999999999999998642       2556778999999999999 8778776


Q ss_pred             EeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC-CCCEEEEE-EeCCCeEEEEECCCCCCCeeee-----cccc
Q 035558          102 VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ-DPRYMATI-IMDSAKVVVLDIRFPTLPVVEL-----QRHQ  174 (253)
Q Consensus       102 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~-~~~~~~i~~~d~~~~~~~~~~~-----~~~~  174 (253)
                      +  ||-|++||.--+.....+...+.+. .+..+..-|+ +..+++.+ +...+ |+++|.|..+- ..++     .+..
T Consensus       802 c--D~giHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeST-VKl~DaRsce~-~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  802 C--DGGIHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAEST-VKLFDARSCEW-TCELKVCNAPGPN  876 (1034)
T ss_pred             c--cCcceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhh-heeeecccccc-eeeEEeccCCCCc
Confidence            6  8889999987665444333222222 3333333332 33444444 45555 99999998652 2222     2344


Q ss_pred             cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      ..+.+++..|.| +.++.+-..|+|.+.|.++++.
T Consensus       877 a~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  877 ALTRAIAVADKG-NKLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             hheeEEEeccCc-chhhHHhcCCcEEEEecCCCce
Confidence            568899999999 6999999999999999999873

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.30  E-value=2.6e-09  Score=77.24  Aligned_cols=177  Identities=8%  Similarity=0.020  Sum_probs=121.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeccCcee-eeeeecccccEEEEEe-c-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC
Q 035558           53 AEPRRIGTSSIDTTCTIWDIEREAV-DTQLIAHDKEVYDIAW-G-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD  129 (253)
Q Consensus        53 ~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~-~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  129 (253)
                      .....|+.|+..|...+|...+.+. .+....|...|+-+.= . ...-+..++.|.++++.++..+..........   
T Consensus        82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---  158 (344)
T KOG4532|consen   82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---  158 (344)
T ss_pred             ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence            3456899999999999999986652 3333334443332221 1 23356677889999998887665333332221   


Q ss_pred             CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee--ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          130 TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       130 ~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      -...+++.++ ++.++++.+.... |-.|.+....+.+..  ....+..-.+..|+... ..+|++..||++.|||++..
T Consensus       159 ~~~ns~~~sn-d~~~~~~Vgds~~-Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  159 LTQNSLHYSN-DPSWGSSVGDSRR-VFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             cceeeeEEcC-CCceEEEecCCCc-ceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence            2478899999 9999999988887 999998775543322  22334445678899887 58999999999999999998


Q ss_pred             CCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          208 GQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ..|....  ......|.+.+..+.|++-|.
T Consensus       236 ~tpm~~~--sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  236 ATPMAEI--SSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             ccchhhh--cccCCCCCCceEEEEecCCCc
Confidence            7665211  123345899999999998665

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.29  E-value=9.3e-11  Score=86.33  Aligned_cols=206  Identities=13%  Similarity=0.224  Sum_probs=138.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----eeeeeeccc------------ccEEEEEec---CCCeEEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----VDTQLIAHD------------KEVYDIAWG---GVGVFASV  102 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~---~~~~l~~~  102 (253)
                      ..|+++.|. ..|.++++|...|.|.++..+...     ....+++|.            ..|..+.|.   ....++..
T Consensus        27 d~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          27 DKITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             ceeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            579999999 889999999999999999876433     222344553            468889998   44578888


Q ss_pred             eCCCcEEEEEcCCCCCe----------------------------------eeee------ccCCCCCCeeEEEeeCCCC
Q 035558          103 SADGSVRVFDLRDKEHS----------------------------------TIIY------ESSEPDTPLVRLGWNKQDP  142 (253)
Q Consensus       103 ~~dg~i~i~d~~~~~~~----------------------------------~~~~------~~~~~~~~i~~~~~~~~~~  142 (253)
                      +.|.+|++|.+......                                  ..+.      ....|...|.++.|+. +.
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence            89999999998654100                                  0000      0123445678899987 66


Q ss_pred             CEEEEEEeCCCeEEEEECCCCCCC--eeeecccc-----cceeEEEEecCCCCeEEEecCCCcEEEEeccCCC------C
Q 035558          143 RYMATIIMDSAKVVVLDIRFPTLP--VVELQRHQ-----ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG------Q  209 (253)
Q Consensus       143 ~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~  209 (253)
                      ..++++. +=+ |.+|++.-....  +..++.|.     .-|++..|+|.....+.-.+..|.|++-|++...      .
T Consensus       185 et~lSaD-dLr-INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ETLLSAD-DLR-INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             heeeecc-cee-eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            6666543 334 999998765432  33444443     4689999999876778888889999999998432      1


Q ss_pred             CCCCCCC---CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          210 PVEGGLD---PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       210 ~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..+....   ...+.+-...|..+.|+++|+++++ -.-.++++|++
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDv  308 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDV  308 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEec
Confidence            1110011   1112233567889999999985554 44467999985

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.4e-09  Score=87.07  Aligned_cols=204  Identities=14%  Similarity=0.115  Sum_probs=117.1

Q ss_pred             CCceEEeec----C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEE-EeCCCe--EEEEeccCc
Q 035558            4 KPDLLATSS----D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT-SSIDTT--CTIWDIERE   75 (253)
Q Consensus         4 ~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~--i~vwd~~~~   75 (253)
                      +|+.|+..+    . .|.+||+.++  ..+.+..+.        ......+|+ |+++.|+. .+.+|.  |+++|++++
T Consensus       228 DG~~La~~s~~~g~~~L~~~dl~tg--~~~~lt~~~--------g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg  296 (448)
T PRK04792        228 DGRKLAYVSFENRKAEIFVQDIYTQ--VREKVTSFP--------GINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIATK  296 (448)
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCC--CeEEecCCC--------CCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCC
Confidence            455555432    1 6888888774  111222222        223467899 78887654 556664  788888877


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEeC-CC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      +.. .+..+.......+|+ +++.++..+. ++  .|.++|+.+++......  ...  .....+|+| +++.++..+.+
T Consensus       297 ~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~--~~~~~~~Sp-DG~~l~~~~~~  370 (448)
T PRK04792        297 ALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGE--QNLGGSITP-DGRSMIMVNRT  370 (448)
T ss_pred             CeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCC--CCcCeeECC-CCCEEEEEEec
Confidence            643 344455556778999 8887766553 44  46666776665322221  111  234568999 88888777664


Q ss_pred             CC--eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc--EEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          152 SA--KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ--ALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       152 ~~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      +.  .|.++|+.++.  ...+... .......|+|+|..++++...++.  +.+++..... .       ..+..+.+.+
T Consensus       371 ~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~-~-------~~l~~~~g~~  439 (448)
T PRK04792        371 NGKFNIARQDLETGA--MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF-K-------ARLPAGQGEV  439 (448)
T ss_pred             CCceEEEEEECCCCC--eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-e-------EECcCCCCCc
Confidence            43  35667777654  2333222 122345899999534444545554  5566653322 1       2333445567


Q ss_pred             eEEEEcCC
Q 035558          228 EQLQWSSS  235 (253)
Q Consensus       228 ~~~~~~~~  235 (253)
                      ...+|+|-
T Consensus       440 ~~p~Wsp~  447 (448)
T PRK04792        440 KSPAWSPF  447 (448)
T ss_pred             CCCccCCC
Confidence            78888873

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.28  E-value=7.1e-09  Score=80.72  Aligned_cols=146  Identities=14%  Similarity=0.137  Sum_probs=111.1

Q ss_pred             CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC-eEEEEeccCceee
Q 035558            1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT-TCTIWDIEREAVD   78 (253)
Q Consensus         1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~   78 (253)
                      ++.+|++++..+. ...+.+...+    -.++  -+|.     ..|.-..+. .+++-++.|..|| .+-|+|.++++..
T Consensus       328 a~~~Gd~ia~VSRGkaFi~~~~~~----~~iq--v~~~-----~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~k  395 (668)
T COG4946         328 AVVNGDYIALVSRGKAFIMRPWDG----YSIQ--VGKK-----GGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVK  395 (668)
T ss_pred             ccCCCcEEEEEecCcEEEECCCCC----eeEE--cCCC-----CceEEEEEc-cCCcceEEeccCCceEEEEecCCceEE
Confidence            4678999999987 8777776664    2222  2444     567777777 6777899999999 8999999987744


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC---Ce
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS---AK  154 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~  154 (253)
                      . +...-+.|.++..+ +|.+++.+.....+.+.|+.+++.. .+  .....+-|+.+.|+| +++++|-+--+|   +.
T Consensus       396 r-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~i--dkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~  470 (668)
T COG4946         396 R-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LI--DKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQS  470 (668)
T ss_pred             E-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-Ee--cccccceeEEEEEcC-CceeEEEecCcceeeee
Confidence            4 44466889999999 9999999999999999999998732 22  223445899999999 999999775554   24


Q ss_pred             EEEEECCCC
Q 035558          155 VVVLDIRFP  163 (253)
Q Consensus       155 i~~~d~~~~  163 (253)
                      |+++|+...
T Consensus       471 Iklydm~~~  479 (668)
T COG4946         471 IKLYDMDGG  479 (668)
T ss_pred             EEEEecCCC
Confidence            889988754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.27  E-value=2.2e-10  Score=86.78  Aligned_cols=155  Identities=11%  Similarity=0.060  Sum_probs=106.1

Q ss_pred             eEEEecCCCCCEEEEEeCCCeEEEEeccCcee----eeeeecccccEEEEEec-CCCeEEEEeCC---CcEEEEEcCCCC
Q 035558           46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV----DTQLIAHDKEVYDIAWG-GVGVFASVSAD---GSVRVFDLRDKE  117 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~  117 (253)
                      ..+..+ ++++++|.+..+....++++.....    ..... -...-+++.|. +......+..-   ..+.+|....+.
T Consensus        66 ~~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   66 ALVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            344455 7888999998888877777654332    22111 22233445555 44444444433   444444444332


Q ss_pred             CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeEEEecCC
Q 035558          118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                          .....+|.+.++.++|+| |+++|+++..|+. |++-....... +.. ..+|...|..++.-++.  .|+++|.|
T Consensus       144 ----~~~~lGhvSml~dVavS~-D~~~IitaDRDEk-IRvs~ypa~f~-IesfclGH~eFVS~isl~~~~--~LlS~sGD  214 (390)
T KOG3914|consen  144 ----CEPILGHVSMLLDVAVSP-DDQFIITADRDEK-IRVSRYPATFV-IESFCLGHKEFVSTISLTDNY--LLLSGSGD  214 (390)
T ss_pred             ----cchhhhhhhhhheeeecC-CCCEEEEecCCce-EEEEecCcccc-hhhhccccHhheeeeeeccCc--eeeecCCC
Confidence                223347778999999999 8899999999998 99877765443 333 45699999999998874  69999999


Q ss_pred             CcEEEEeccCCCCCC
Q 035558          197 SQALIWDLSSMGQPV  211 (253)
Q Consensus       197 g~i~iwd~~~~~~~~  211 (253)
                      +++++||+++++.+.
T Consensus       215 ~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  215 KTLRLWDITSGKLLD  229 (390)
T ss_pred             CcEEEEecccCCccc
Confidence            999999999988653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.25  E-value=5.2e-08  Score=75.65  Aligned_cols=231  Identities=10%  Similarity=0.053  Sum_probs=137.1

Q ss_pred             CCCCCceEEeec---------C--cEEEEEccCCccccceeeeecCCCCcc--ccCCeeEEEecCCCCCEEEEEe-C-CC
Q 035558            1 ECQKPDLLATSS---------D--FLRVWRISDEDRRVELKSLLNGNKNSE--YCGPLTSFDWNEAEPRRIGTSS-I-DT   65 (253)
Q Consensus         1 sp~~~~~l~~~~---------~--~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~-dg   65 (253)
                      ||+...+.++.+         +  .|.+||..+.    +....+.......  ....-..++++ +++++|+... . +.
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----~~~~~i~~p~~p~~~~~~~~~~~~ls-~dgk~l~V~n~~p~~  128 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH----LPIADIELPEGPRFLVGTYPWMTSLT-PDNKTLLFYQFSPSP  128 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccC----cEEeEEccCCCchhhccCccceEEEC-CCCCEEEEecCCCCC
Confidence            567777777776         4  9999999997    7776665433111  00223467888 8999888765 3 68


Q ss_pred             eEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--C-----CCCCeeEEEee
Q 035558           66 TCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESS--E-----PDTPLVRLGWN  138 (253)
Q Consensus        66 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~-----~~~~i~~~~~~  138 (253)
                      .|.+.|+.+++.+..+... +...-...+ ...+..-+.||......+.............  .     ...+    .|.
T Consensus       129 ~V~VvD~~~~kvv~ei~vp-~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~  202 (352)
T TIGR02658       129 AVGVVDLEGKAFVRMMDVP-DCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYS  202 (352)
T ss_pred             EEEEEECCCCcEEEEEeCC-CCcEEEEec-CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceE
Confidence            9999999999988877642 222222222 2222233456655554444332211111000  0     0112    345


Q ss_pred             CCCCCEEEEEEeCCCeEEEEECCCCC----CCeeeec-------ccccceeEEEEecCCCCeEEEec----------CCC
Q 035558          139 KQDPRYMATIIMDSAKVVVLDIRFPT----LPVVELQ-------RHQASVNAIAWAPHSSCHICTAG----------DDS  197 (253)
Q Consensus       139 ~~~~~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~----------~dg  197 (253)
                      +.++.++.+... |. |.+.|+....    .+...+.       -..+.+.-++++|++. .++...          ..+
T Consensus       203 ~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-~lyV~~~~~~~~thk~~~~  279 (352)
T TIGR02658       203 NKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-RIYLLADQRAKWTHKTASR  279 (352)
T ss_pred             cCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-EEEEEecCCccccccCCCC
Confidence            546666665544 76 9999975432    1122211       1233444599999995 555532          225


Q ss_pred             cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEE-cCCcEEEEEC
Q 035558          198 QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIA-FSTKLQILRV  253 (253)
Q Consensus       198 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~i~vw~l  253 (253)
                      .|.++|..+.+..        ....-...+..++++|+++ .+++.. .++.|.++|+
T Consensus       280 ~V~ViD~~t~kvi--------~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       280 FLFVVDAKTGKRL--------RKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             EEEEEECCCCeEE--------EEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            7999999887643        2223456899999999998 666555 5777888874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.25  E-value=4.1e-11  Score=97.43  Aligned_cols=199  Identities=15%  Similarity=0.286  Sum_probs=150.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeeeccc--ccEEEEEec---CCCeEEEEeCCCcEEEEEcCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLIAHD--KEVYDIAWG---GVGVFASVSADGSVRVFDLRDK  116 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~--~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~  116 (253)
                      +.+.++..+ |.++-++.++.-| +.+.|+... ....-+. |-  -.|-++.|+   ...+-++......-.+|++...
T Consensus        25 ~~~~a~si~-p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   25 GGFNAVSIN-PSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             Ccccceeec-cccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            467788888 7788888888776 556676543 2222222 22  345677787   2334444444555678998876


Q ss_pred             CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558          117 EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       117 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      ....+-+...+|...|+.+-|+|.....+++++.|.. ++.||+++...++.....-...-..++|+-..+ .+.+.+..
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~-vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p-~vlasshg  179 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY-VHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP-NVLASSHG  179 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeecccccc-ceeeeccCCCcceeeeecccccCceeeecccCc-chhhhccC
Confidence            6555556666788899999999999999999999998 999999999888887776666778899998776 45555667


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC-CCceEEEEcCCcEEEEE
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS-QPDWVAIAFSTKLQILR  252 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~vw~  252 (253)
                      +.|++||++.+..|.      ....+|...|+.++|... ...+++.+.|+.++.|+
T Consensus       180 ~~i~vwd~r~gs~pl------~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~  230 (1081)
T KOG0309|consen  180 NDIFVWDLRKGSTPL------CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD  230 (1081)
T ss_pred             CceEEEeccCCCcce------EEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence            889999999999876      677789999999999764 23477899999999996

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.25  E-value=3.8e-10  Score=85.54  Aligned_cols=154  Identities=10%  Similarity=0.067  Sum_probs=106.8

Q ss_pred             EEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC-eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCCC
Q 035558           88 VYDIAWG-GVGVFASVSADGSVRVFDLRDKEH-STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRFP  163 (253)
Q Consensus        88 v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~  163 (253)
                      +..+..+ .++++|.+..+....+++++...+ .+........ ..-+.+.|.. +.....++...|-  .+.+|.... 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~-  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS-  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeee-ccceEEEEeecCCceeeeeecccc-
Confidence            3444555 788888888888888888876653 2222211111 1334455554 3344444443333  244444443 


Q ss_pred             CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                       .+...+.+|-..++.++|+||+ ++++++..|..|+|-.........      ....+|..-|..++.-++.. |+++|
T Consensus       142 -~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Ie------sfclGH~eFVS~isl~~~~~-LlS~s  212 (390)
T KOG3914|consen  142 -GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIE------SFCLGHKEFVSTISLTDNYL-LLSGS  212 (390)
T ss_pred             -cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchh------hhccccHhheeeeeeccCce-eeecC
Confidence             3356677899999999999999 799999999999998777655333      46778999999999998864 88999


Q ss_pred             cCCcEEEEEC
Q 035558          244 FSTKLQILRV  253 (253)
Q Consensus       244 ~~~~i~vw~l  253 (253)
                      .|+++++|++
T Consensus       213 GD~tlr~Wd~  222 (390)
T KOG3914|consen  213 GDKTLRLWDI  222 (390)
T ss_pred             CCCcEEEEec
Confidence            9999999985

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.24  E-value=1.1e-08  Score=79.73  Aligned_cols=217  Identities=12%  Similarity=0.042  Sum_probs=145.2

Q ss_pred             CCCceEEeec-CcEEEEEccCCccccceeee-ec---CCCCccccCCeeEEE-ecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558            3 QKPDLLATSS-DFLRVWRISDEDRRVELKSL-LN---GNKNSEYCGPLTSFD-WNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         3 ~~~~~l~~~~-~~v~iw~~~~~~~~~~~~~~-~~---~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      .+|..++-.. +.|.+||..+.  ..+.+.. +.   ..+.+.+..+..-+. |++.++++++..+. |...+.+...+-
T Consensus       276 sDGkrIvFq~~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~  352 (668)
T COG4946         276 SDGKRIVFQNAGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY  352 (668)
T ss_pred             CCCcEEEEecCCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence            3555555544 49999999873  1111111 01   111111112222233 66678999999886 678888776665


Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeCCC-cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADG-SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      .++.  +|.+.|.-..+. +++-++.|..|| .+-++|.++++....    ...-+.|.++..+| +++.++++..... 
T Consensus       353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~----e~~lg~I~av~vs~-dGK~~vvaNdr~e-  424 (668)
T COG4946         353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI----EKDLGNIEAVKVSP-DGKKVVVANDRFE-  424 (668)
T ss_pred             eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe----eCCccceEEEEEcC-CCcEEEEEcCceE-
Confidence            5542  467778888888 888999999999 899999998863222    23445899999999 9999888876666 


Q ss_pred             EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCC----cEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558          155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDS----QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL  230 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  230 (253)
                      +.++|+.++.. ...-+...+-|+..+|+|++ +++|-+--+|    .|+++|+..++...        .......=.+-
T Consensus       425 l~vididngnv-~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~--------vTT~ta~DfsP  494 (668)
T COG4946         425 LWVIDIDNGNV-RLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYD--------VTTPTAYDFSP  494 (668)
T ss_pred             EEEEEecCCCe-eEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEE--------ecCCcccccCc
Confidence            99999998763 23333456789999999999 6898776554    78999998876321        11122222345


Q ss_pred             EEcCCCCceE
Q 035558          231 QWSSSQPDWV  240 (253)
Q Consensus       231 ~~~~~~~~~~  240 (253)
                      +|.|++++|.
T Consensus       495 aFD~d~ryLY  504 (668)
T COG4946         495 AFDPDGRYLY  504 (668)
T ss_pred             ccCCCCcEEE
Confidence            7788887654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=3.6e-09  Score=86.83  Aligned_cols=227  Identities=16%  Similarity=0.161  Sum_probs=161.1

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC-----------CCEEEEEeCCCeEEEEec
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE-----------PRRIGTSSIDTTCTIWDI   72 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~dg~i~vwd~   72 (253)
                      +.++|-|+. .|.+-|..+-    +.++.+..|+     ..|+.+.|.|..           .-+||++...|.|.+||+
T Consensus        26 ~GLiAygshslV~VVDs~s~----q~iqsie~h~-----s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~   96 (1062)
T KOG1912|consen   26 SGLIAYGSHSLVSVVDSRSL----QLIQSIELHQ-----SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF   96 (1062)
T ss_pred             cceEEEecCceEEEEehhhh----hhhhccccCc-----cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence            457888887 8999998875    8899999999     899999998521           236788889999999999


Q ss_pred             cCceeeeeeecccccEEEEEec----CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558           73 EREAVDTQLIAHDKEVYDIAWG----GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT  147 (253)
Q Consensus        73 ~~~~~~~~~~~~~~~v~~~~~~----~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  147 (253)
                      ..+..+..+..|..++.+++|-    +. ..|+.-....++.+|+..+++   .+...........|+.+.|.+.+.+..
T Consensus        97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~---k~Wk~~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE---KFWKYDYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc---eeeccccCCcceeeeeeCCCCcceEEE
Confidence            9998888888899999999997    23 467777778899999999997   455544444477889999999999888


Q ss_pred             EEeCCCeEEEEECCCCCC---Ceeeec---cccc-------------------------ceeEEEEecCCCCeEEEecCC
Q 035558          148 IIMDSAKVVVLDIRFPTL---PVVELQ---RHQA-------------------------SVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       148 ~~~~~~~i~~~d~~~~~~---~~~~~~---~~~~-------------------------~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      -+..|. +.+.+.-...+   +.+.++   .|..                         ....++|+|.-. -++....-
T Consensus       174 l~s~g~-vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r-n~lfi~~p  251 (1062)
T KOG1912|consen  174 LGSKGF-VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR-NILFITFP  251 (1062)
T ss_pred             EccCce-EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh-ceEEEEec
Confidence            888887 66665432221   122211   1211                         112356788653 33333456


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC--CceEEEEcCCcEEEEE
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ--PDWVAIAFSTKLQILR  252 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~i~vw~  252 (253)
                      ..+.++|++-.....       ...-..+.+.-+.|-|+.  ..+++.-.+|.+.+|.
T Consensus       252 rellv~dle~~~~l~-------vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLA-------VVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             cceEEEcchhhceeE-------EEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            779999998765433       222233444455666654  4577999999999884

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=4.1e-10  Score=91.57  Aligned_cols=221  Identities=15%  Similarity=0.290  Sum_probs=154.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCc-----------cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEE
Q 035558            4 KPDLLATSS-D-FLRVWRISDED-----------RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIW   70 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw   70 (253)
                      +..++|+|+ + .+++..+.+..           ..+...+++.||.     +.|.-+.|+ .+.+.|-+...+|.|.||
T Consensus        25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~-----~sV~vvTWN-e~~QKLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN-----ASVMVVTWN-ENNQKLTTSDTSGLIIVW   98 (1189)
T ss_pred             cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc-----ceEEEEEec-cccccccccCCCceEEEE
Confidence            345788877 4 88888876531           1233456788998     999999999 788889999999999999


Q ss_pred             eccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558           71 DIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT  147 (253)
Q Consensus        71 d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  147 (253)
                      -+-.+.-...+.  ..++.|.+++|+ +|..+...-.||.|.+=.++.+.    +....-.......+.|++ +...++.
T Consensus        99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR----IwgKeLkg~~l~hv~ws~-D~~~~Lf  173 (1189)
T KOG2041|consen   99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR----IWGKELKGQLLAHVLWSE-DLEQALF  173 (1189)
T ss_pred             eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce----ecchhcchheccceeecc-cHHHHHh
Confidence            998776333332  346788999999 99999999999999888777664    222212222456788999 7777777


Q ss_pred             EEeCCCeEEEEECCCCCC------Ceee----ecccccceeEEEEe--------cCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          148 IIMDSAKVVVLDIRFPTL------PVVE----LQRHQASVNAIAWA--------PHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       148 ~~~~~~~i~~~d~~~~~~------~~~~----~~~~~~~i~~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      +-..|. +++||....-.      +...    +......|..+.|.        |+.+ .|+.+-..|.+.|-.-.+...
T Consensus       174 ~~ange-~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  174 KKANGE-THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             hhcCCc-EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCC
Confidence            777777 99999764211      1000    11111235555554        5775 899999999999876655544


Q ss_pred             CCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558          210 PVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                      |        .....+-.+....|+++|..++.+|.+
T Consensus       252 P--------vv~dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  252 P--------VVVDTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             C--------eEEecccEeecceecCCCcEEEEccCc
Confidence            4        334445789999999999865555544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.18  E-value=2.8e-10  Score=81.72  Aligned_cols=195  Identities=13%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceee------------eeeecccccEEEEEec-CCCeEEEEeCCCcEEEE
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD------------TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVF  111 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~  111 (253)
                      |+.+.+.  ....|+++..++.+.....-++.+.            ..+..|.++-.+-+.+ .++-++++..||.+.++
T Consensus        39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            6666665  3455667766766665554433322            2222233322222223 56778999999999999


Q ss_pred             EcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-----eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558          112 DLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-----MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS  186 (253)
Q Consensus       112 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  186 (253)
                      +.+...  +...........-.+.+... .++.+.+++     .-+. .+.|+++..+..+...+. ...|.+++-+|..
T Consensus       117 s~~~~~--~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~-~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~q  191 (319)
T KOG4714|consen  117 STDKDL--ALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDN-FYANTLDPIKTLIPSKKA-LDAVTALCSHPAQ  191 (319)
T ss_pred             echHHH--hhhhhcccccccccccceee-cccEEecCCcceEeeccc-eeeecccccccccccccc-cccchhhhCCccc
Confidence            987632  11111111111111122222 334443322     1223 667777654322222222 2349999999987


Q ss_pred             CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC-CceEEEEcCCcEEEEE
Q 035558          187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ-PDWVAIAFSTKLQILR  252 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~vw~  252 (253)
                      .+++++|+.||.+.+||.++...|.      ..+..|..+++.+-|+|.. ..|++++.||.+-.|+
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPV------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchH------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            6788999999999999999987665      5677899999999999965 4688999999998886

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=6.1e-10  Score=88.23  Aligned_cols=192  Identities=16%  Similarity=0.265  Sum_probs=133.4

Q ss_pred             CCceEEeec-C-cEEEEEccCCcccc---ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRV---ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +.+-+++++ | +|++|.+....+..   .+..+++.|+     .+|.++.|- .+-+.+++  .||-|.+||.-.++.+
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk-----k~i~~igfL-~~lr~i~S--cD~giHlWDPFigr~L  817 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK-----KPIHDIGFL-ADLRSIAS--CDGGIHLWDPFIGRLL  817 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhcc-----Ccccceeee-eccceeee--ccCcceeecccccchh
Confidence            334455555 6 99999997643333   4788899999     899999998 66667665  4788999998777755


Q ss_pred             eeee-----cccccEEEEEecCCCeEE-EEeCCCcEEEEEcCCCCCeeeee--ccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           79 TQLI-----AHDKEVYDIAWGGVGVFA-SVSADGSVRVFDLRDKEHSTIIY--ESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        79 ~~~~-----~~~~~v~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ..+.     +..+.|.++.--+...++ .++...+|+++|-+..+-.....  ....++.-+.+++..| .|+.++++-.
T Consensus       818 aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LS  896 (1034)
T KOG4190|consen  818 AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALS  896 (1034)
T ss_pred             HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhc
Confidence            5332     222344444332444444 44789999999999876433332  3355666789999998 9999999999


Q ss_pred             CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE-EeccCCC
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI-WDLSSMG  208 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~  208 (253)
                      +|. |.+.|.|++.. +...+.-+.....++- |.. +.|+....|.++.+ |..-.+.
T Consensus       897 nGc-i~~LDaR~G~v-INswrpmecdllqlaa-psd-q~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  897 NGC-IAILDARNGKV-INSWRPMECDLLQLAA-PSD-QALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             CCc-EEEEecCCCce-eccCCcccchhhhhcC-chh-HHHHhhcccceeEeeehhcCCe
Confidence            998 99999998764 5555544444444443 444 57888888999998 8766554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.14  E-value=3e-09  Score=88.65  Aligned_cols=186  Identities=12%  Similarity=0.107  Sum_probs=138.0

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeE
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVR  134 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~  134 (253)
                      +..++-|+....+..+|+++.+..+...-..+.|.-|+. +++.+.+|...|+|.+-|.++-+   .+.....|.+.|..
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~---~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFE---TIHTFDAHSGSISD  222 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCc---eeeeeeccccceee
Confidence            455666666667888899888877766544445666665 58899999999999999998887   45555677777777


Q ss_pred             EEeeCCCCCEEEEEEeCCC--------eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          135 LGWNKQDPRYMATIIMDSA--------KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      +..   .|++|+++|...+        .|+|||+|+.+. +..+.-+.++ .-+.|+|.-...+++++..|...+-|..+
T Consensus       223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eec---cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence            665   7899999987653        279999998764 4434433333 56789998767899999999999999665


Q ss_pred             CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          207 MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ...|.   .........+..+.++.+++++..++.+..+|.|.+|.
T Consensus       298 lsNP~---~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNPP---AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCCCc---cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            55443   11233444566799999999999777888999999994

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.7e-08  Score=77.03  Aligned_cols=84  Identities=21%  Similarity=0.388  Sum_probs=71.7

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSAD  105 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d  105 (253)
                      +....+..+.     ..|.+++|+|.+..++..++.+..|+|.|+++...+..+..+ ..+++++|.  +.+++..|-..
T Consensus       184 kssq~lp~~g-----~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~n  257 (463)
T KOG1645|consen  184 KSSQILPGEG-----SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQN  257 (463)
T ss_pred             chhhcccccc-----hhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccC
Confidence            4444556666     789999999766678999999999999999999988888877 789999999  66788888899


Q ss_pred             CcEEEEEcCCCC
Q 035558          106 GSVRVFDLRDKE  117 (253)
Q Consensus       106 g~i~i~d~~~~~  117 (253)
                      |.|.+||++..+
T Consensus       258 G~VlvyD~R~~~  269 (463)
T KOG1645|consen  258 GMVLVYDMRQPE  269 (463)
T ss_pred             ceEEEEEccCCC
Confidence            999999999765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.4e-08  Score=78.32  Aligned_cols=225  Identities=16%  Similarity=0.264  Sum_probs=134.9

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-----------CCeEEEE
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-----------DTTCTIW   70 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~vw   70 (253)
                      |.|.+|++--. .|.+|--..    +..++.+ .|.      .|.-+.|| |+.++|++-+.           ...++||
T Consensus       220 P~GTYL~t~Hk~GI~lWGG~~----f~r~~RF-~Hp------~Vq~idfS-P~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  220 PKGTYLVTFHKQGIALWGGES----FDRIQRF-YHP------GVQFIDFS-PNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             CCceEEEEEeccceeeecCcc----HHHHHhc-cCC------CceeeecC-CccceEEEecCCccccCcccCCCceEEEE
Confidence            45778888777 899996444    2444444 343      58889999 89999998652           2579999


Q ss_pred             eccCceeeeeeecc--cccEE-EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           71 DIEREAVDTQLIAH--DKEVY-DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        71 d~~~~~~~~~~~~~--~~~v~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                      |+.+|.....+...  ...++ -..|+ ++.++|.-..+ .|.||+..+-.   .+....-.-..|....|+| .+++||
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~---lld~Kslki~gIr~FswsP-~~~llA  362 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFM---LLDKKSLKISGIRDFSWSP-TSNLLA  362 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCcee---eecccccCCccccCcccCC-CcceEE
Confidence            99999988877652  22222 46889 89988877664 58888765422   1111111122455566666 444444


Q ss_pred             EEEeC---------------------------------------------------------CCeEEEEECCCCCCCeee
Q 035558          147 TIIMD---------------------------------------------------------SAKVVVLDIRFPTLPVVE  169 (253)
Q Consensus       147 ~~~~~---------------------------------------------------------~~~i~~~d~~~~~~~~~~  169 (253)
                      -=...                                                         .+ +-|+.++....|+..
T Consensus       363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~  441 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEV  441 (698)
T ss_pred             EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCcee
Confidence            21100                                                         01 223333332223322


Q ss_pred             ecccccceeEEEEecCCCCeEEEecC--CCcEEEEeccC-CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE---E
Q 035558          170 LQRHQASVNAIAWAPHSSCHICTAGD--DSQALIWDLSS-MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI---A  243 (253)
Q Consensus       170 ~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~  243 (253)
                      +. -...|...+|.|.|+++.+..+.  ..++.+|.+++ ...+.      ....-.....+.+.|+|.|+.++++   +
T Consensus       442 ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~------lVk~~dk~~~N~vfwsPkG~fvvva~l~s  514 (698)
T KOG2314|consen  442 VE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS------LVKELDKKFANTVFWSPKGRFVVVAALVS  514 (698)
T ss_pred             ee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh------hhhhhcccccceEEEcCCCcEEEEEEecc
Confidence            22 24567888999999755554443  47889999884 33322      1111123567889999999976643   3


Q ss_pred             cCCcEEEEE
Q 035558          244 FSTKLQILR  252 (253)
Q Consensus       244 ~~~~i~vw~  252 (253)
                      ..+.+.+++
T Consensus       515 ~~g~l~F~D  523 (698)
T KOG2314|consen  515 RRGDLEFYD  523 (698)
T ss_pred             cccceEEEe
Confidence            456666665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=9.4e-08  Score=85.09  Aligned_cols=159  Identities=11%  Similarity=0.048  Sum_probs=106.2

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec---------------ccccEEEEEec-CCC-eEEEEeCCCc
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA---------------HDKEVYDIAWG-GVG-VFASVSADGS  107 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~-~l~~~~~dg~  107 (253)
                      -..++++|.++.++++.+.++.|++||..++... .+.+               .-.....++++ +++ ++++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            3578999446777788788899999999776532 1111               01235678998 776 5566667899


Q ss_pred             EEEEEcCCCCCeeeee----------ccCCC--------CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee
Q 035558          108 VRVFDLRDKEHSTIIY----------ESSEP--------DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE  169 (253)
Q Consensus       108 i~i~d~~~~~~~~~~~----------~~~~~--------~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~  169 (253)
                      |++||+.++.......          .....        -.....+++++ +++++++-..++. |++||..+..  +..
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~r-IrviD~~tg~--v~t  839 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHK-IKKLDPATKR--VTT  839 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCE-EEEEECCCCe--EEE
Confidence            9999998764211110          00000        11345788998 7877666666666 9999987643  222


Q ss_pred             ecc--------------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          170 LQR--------------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       170 ~~~--------------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      +.+              +-.....++++++| +++++-+.++.|++||+.+...
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence            211              12356789999999 6888888999999999988653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=6e-09  Score=85.76  Aligned_cols=186  Identities=14%  Similarity=0.161  Sum_probs=125.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      ..+.|++++   +.+|+-|+.+|.|++++... .. .+...|...      . +|.++++|+.||+|.+-.+-+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            467777776   78999999999999999863 33 333334433      5 899999999999999999888775443


Q ss_pred             eeccCCCCCCeeEEEeeCC----CCCEEEEEEeCCCeEEEEECCCCCCCe-eeecccccceeEEEEecCCCCeEEEecCC
Q 035558          122 IYESSEPDTPLVRLGWNKQ----DPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      ..    ...++.+++++|+    ..+.+++||..|  +.++.-+-.+... ..+..-.++|.++.|.  | .++|-++.+
T Consensus       109 ~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g-~lIAWand~  179 (846)
T KOG2066|consen  109 YD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--G-NLIAWANDD  179 (846)
T ss_pred             Ee----cCCcceeEEeccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecCccceEEEEec--C-cEEEEecCC
Confidence            32    2238899999994    256788887766  7777654433211 2355567899999998  4 478888766


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      | |+|||+...+....... +............+.|.+..+  +..|...+|+|..
T Consensus       180 G-v~vyd~~~~~~l~~i~~-p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~  231 (846)
T KOG2066|consen  180 G-VKVYDTPTRQRLTNIPP-PSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICS  231 (846)
T ss_pred             C-cEEEeccccceeeccCC-CCCCCCcccCCCceEecCCCe--EEEecCCeEEEEE
Confidence            5 89999998775431111 111112233345678888764  4455555666654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=1.7e-09  Score=88.11  Aligned_cols=158  Identities=16%  Similarity=0.274  Sum_probs=120.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------------eeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---------------VDTQLIAHDKEVYDIAWG-GVGVFASVSADG  106 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg  106 (253)
                      ....+++|+ .+..+++.|+.||.++|..+.+..               .-+++.+|...|.-+.|+ ..+.|-+...+|
T Consensus        15 vkL~c~~WN-ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   15 VKLHCAEWN-KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             ceEEEEEEc-ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            568899999 899999999999999999886532               335677999999999999 888999999999


Q ss_pred             cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558          107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS  186 (253)
Q Consensus       107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  186 (253)
                      .|.+|-+-.+.-...+.. ....+.|.+++|+. +|..|...-.||. |.+=.+.....--+.+++  .....+.|++|.
T Consensus        94 lIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~-dG~kIcIvYeDGa-vIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNL-DGTKICIVYEDGA-VIVGSVDGNRIWGKELKG--QLLAHVLWSEDL  168 (1189)
T ss_pred             eEEEEeeecccHHHHHhh-CcCccEEEEEEEcC-CCcEEEEEEccCC-EEEEeeccceecchhcch--heccceeecccH
Confidence            999999887753222222 23445899999999 8888888888887 766666543321222332  224478999998


Q ss_pred             CCeEEEecCCCcEEEEeccCC
Q 035558          187 SCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~  207 (253)
                       ..++.+-..|.+.+||.+..
T Consensus       169 -~~~Lf~~ange~hlydnqgn  188 (1189)
T KOG2041|consen  169 -EQALFKKANGETHLYDNQGN  188 (1189)
T ss_pred             -HHHHhhhcCCcEEEeccccc
Confidence             57777888899999998754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.08  E-value=1.5e-06  Score=65.21  Aligned_cols=211  Identities=8%  Similarity=-0.009  Sum_probs=128.1

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |.++.++.+.- . .|..|+...+     ....+...       ....+.+..++ ..++.+...+ +.++|..+++...
T Consensus         9 ~~~g~l~~~D~~~~~i~~~~~~~~-----~~~~~~~~-------~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~   74 (246)
T PF08450_consen    9 PRDGRLYWVDIPGGRIYRVDPDTG-----EVEVIDLP-------GPNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTV   74 (246)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTT-----EEEEEESS-------SEEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEE
T ss_pred             CCCCEEEEEEcCCCEEEEEECCCC-----eEEEEecC-------CCceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEE
Confidence            34677777765 3 8888888874     22222222       25577776344 4555555544 5666988886443


Q ss_pred             eeec-----ccccEEEEEec-CCCeEEEEeCC--------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558           80 QLIA-----HDKEVYDIAWG-GVGVFASVSAD--------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM  145 (253)
Q Consensus        80 ~~~~-----~~~~v~~~~~~-~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  145 (253)
                      ....     .....+++++. ++++.++....        |.|..++.. ++ .......   -...+.++|+| +++.|
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~---~~~pNGi~~s~-dg~~l  148 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG---LGFPNGIAFSP-DGKTL  148 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE---ESSEEEEEEET-TSSEE
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecC---cccccceEECC-cchhe
Confidence            3332     34678899999 88877776644        456666666 33 2222221   12578899999 88877


Q ss_pred             EEEEeCCCeEEEEECCCCCCCe---e---eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558          146 ATIIMDSAKVVVLDIRFPTLPV---V---ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       146 ~~~~~~~~~i~~~d~~~~~~~~---~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      +++......|..+++......+   .   .+....+..-.+++..+| ++.++....+.|.+++.. ++...       .
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~~-------~  219 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKLLR-------E  219 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEE-------E
T ss_pred             eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccEEE-------E
Confidence            7666555559999987543211   1   122222347889999999 577777778999999987 44222       2


Q ss_pred             eccCCCceeEEEEc-CCCCceEE
Q 035558          220 AYTAGAEIEQLQWS-SSQPDWVA  241 (253)
Q Consensus       220 ~~~~~~~v~~~~~~-~~~~~~~~  241 (253)
                      ..-....+++++|. ++...|+.
T Consensus       220 i~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  220 IELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EE-SSSSEEEEEEESTTSSEEEE
T ss_pred             EcCCCCCEEEEEEECCCCCEEEE
Confidence            22224589999994 56554543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.06  E-value=3.8e-07  Score=68.49  Aligned_cols=194  Identities=14%  Similarity=0.089  Sum_probs=123.9

Q ss_pred             EEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc
Q 035558           47 SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES  125 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  125 (253)
                      +..|.+.++.++++-...+.|..|+..+++... +... . ...+++. .+..++.+...+ +.++|..+++........
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            567884478888887788999999998776433 2212 2 6677777 556666666655 555698887543333331


Q ss_pred             -CC-CCCCeeEEEeeCCCCCEEEEEEeC--------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558          126 -SE-PDTPLVRLGWNKQDPRYMATIIMD--------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       126 -~~-~~~~i~~~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                       .. .....+.+++.| ++++.++....        +. |..++.. .+  +..+...-...+.++|+|++..++++-+.
T Consensus        80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~-v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGS-VYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEE-EEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccc-eEEECCC-Ce--EEEEecCcccccceEECCcchheeecccc
Confidence             12 344788999999 88866665433        33 6666766 22  34344345567899999999534457788


Q ss_pred             CCcEEEEeccCCCCCCCCCCCCeee---ccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          196 DSQALIWDLSSMGQPVEGGLDPILA---YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       196 dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .+.|..|++.......   ......   .......-.+++..+|..+++.-..+.|.+++
T Consensus       155 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  155 NGRIWRFDLDADGGEL---SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             TTEEEEEEEETTTCCE---EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             cceeEEEeccccccce---eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            8999999997544311   001111   11223578899999998777777788888775

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.06  E-value=1.4e-07  Score=82.68  Aligned_cols=198  Identities=15%  Similarity=0.240  Sum_probs=123.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEecc----C-------------------ceeeeeeec----------------
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE----R-------------------EAVDTQLIA----------------   83 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~-------------------~~~~~~~~~----------------   83 (253)
                      ..|.+++|| |++..|+..+.++++.+....    .                   |+....|+|                
T Consensus       121 ~GI~a~~WS-PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  121 SGILAASWS-PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             CcEEEEEEC-CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            679999999 899999999989988775421    0                   010111110                


Q ss_pred             --------ccccEEEEEec-CCCeEEEEeC---C---CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           84 --------HDKEVYDIAWG-GVGVFASVSA---D---GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        84 --------~~~~v~~~~~~-~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                              ....-..++|. ||.+||+.+.   .   ..+++|+-+ +.   .........+--..++|.| .|++||+.
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~---L~stSE~v~gLe~~l~WrP-sG~lIA~~  274 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE---LQSTSEPVDGLEGALSWRP-SGNLIASS  274 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce---EEeccccCCCccCCccCCC-CCCEEEEE
Confidence                    12234567898 9999998874   3   479999876 32   2222222223345689999 99999988


Q ss_pred             EeCC--CeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          149 IMDS--AKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       149 ~~~~--~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      ....  ..|.+|.-...+.-...++  .....|..++|++++ ..|+..-.|. |.+|-..+..--.    +-...+...
T Consensus       275 q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYL----Kqei~~~~~  348 (928)
T PF04762_consen  275 QRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYL----KQEIRFSSS  348 (928)
T ss_pred             EEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEE----EEEEEccCC
Confidence            7622  2377776543321122222  345679999999999 5888876555 9999888865222    001222334


Q ss_pred             CceeEEEEcCCCCceE-EEEcCCcEEEEE
Q 035558          225 AEIEQLQWSSSQPDWV-AIAFSTKLQILR  252 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~-~~~~~~~i~vw~  252 (253)
                      ..+..+.|+|..+.-+ ....++.+..++
T Consensus       349 ~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  349 ESVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence            4455699999876544 444446665543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=8.6e-10  Score=82.29  Aligned_cols=165  Identities=15%  Similarity=0.223  Sum_probs=113.4

Q ss_pred             EEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC-----CeeeeeccCCCCCCe
Q 035558           59 GTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE-----HSTIIYESSEPDTPL  132 (253)
Q Consensus        59 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~i  132 (253)
                      ++.+.+..|-+-|++++- .+.+. ..+.|.++.|. .++++..|+..|.|..+|++...     +...+    .|.+.|
T Consensus       228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----yh~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----YHDSSV  301 (425)
T ss_pred             ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----EcCcch
Confidence            444556678888988764 23343 56789999999 89999999999999999999762     11222    345578


Q ss_pred             eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--CeeeecccccceeEE--EEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          133 VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--PVVELQRHQASVNAI--AWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~i~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      +++..-..++.+|++.+.+|. |++||+|..+.  .+.++.+|...-.-+  ...+.. ..+++++.|...|||.++.+.
T Consensus       302 tslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhhhhhccccceEeeccCcCc-eeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCc
Confidence            887765547789999999999 99999997542  266667665432222  234444 488899999999999999876


Q ss_pred             CCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          209 QPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      ...   +.|.........+.+++|..
T Consensus       380 Ll~---tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  380 LLC---TIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eee---ccCCCCccccccccceehhc
Confidence            433   11112222334566666643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.04  E-value=1.6e-06  Score=65.34  Aligned_cols=218  Identities=11%  Similarity=0.061  Sum_probs=135.1

Q ss_pred             CCCCCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-----CCCeEEEEec
Q 035558            1 ECQKPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-----IDTTCTIWDI   72 (253)
Q Consensus         1 sp~~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~vwd~   72 (253)
                      +|..+..++.+-.   ...+||..++    +....+.......|.+   .-.|+ +++++|++.-     ..|.|-|||.
T Consensus        13 ~p~~~~avafaRRPG~~~~v~D~~~g----~~~~~~~a~~gRHFyG---Hg~fs-~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen   13 HPTRPEAVAFARRPGTFALVFDCRTG----QLLQRLWAPPGRHFYG---HGVFS-PDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             CCCCCeEEEEEeCCCcEEEEEEcCCC----ceeeEEcCCCCCEEec---CEEEc-CCCCEEEEeccccCCCcEEEEEEEC
Confidence            3667778888875   8999999987    5555554443222211   35688 8999998863     3578999999


Q ss_pred             c-CceeeeeeecccccEEEEEec-CCCeEEEEe------------------CCCcEEEEEcCCCCCeeeeec-cCCCCCC
Q 035558           73 E-REAVDTQLIAHDKEVYDIAWG-GVGVFASVS------------------ADGSVRVFDLRDKEHSTIIYE-SSEPDTP  131 (253)
Q Consensus        73 ~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~-~~~~~~~  131 (253)
                      . +.+.+..+..|.-....+.+. +++.|+.+-                  .+-.+...|.++++....... ...+...
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence            8 566778888777677788888 887776652                  122344445555543322211 1335558


Q ss_pred             eeEEEeeCCCCCEEEEEEeCCC------eEEEEECCCCCC----CeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558          132 LVRLGWNKQDPRYMATIIMDSA------KVVVLDIRFPTL----PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI  201 (253)
Q Consensus       132 i~~~~~~~~~~~~l~~~~~~~~------~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  201 (253)
                      |..+++.+ ++..+...-..+-      .+-+++....-.    +......-...+-+|++++++....+|+=..+.+.+
T Consensus       165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            99999998 6665555443331      133333322100    011112234679999999998534455558899999


Q ss_pred             EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      ||..++...         ....-..+..++-.+++
T Consensus       244 ~d~~tg~~~---------~~~~l~D~cGva~~~~~  269 (305)
T PF07433_consen  244 WDAATGRLL---------GSVPLPDACGVAPTDDG  269 (305)
T ss_pred             EECCCCCEe---------eccccCceeeeeecCCc
Confidence            999988732         22234456677777665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=9.8e-07  Score=71.14  Aligned_cols=179  Identities=8%  Similarity=-0.010  Sum_probs=106.2

Q ss_pred             CeeEEEecCCCCCE-EEEEeC---CCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEE-EeCC--CcEEEEEcCC
Q 035558           44 PLTSFDWNEAEPRR-IGTSSI---DTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFAS-VSAD--GSVRVFDLRD  115 (253)
Q Consensus        44 ~v~~~~~~~~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~d--g~i~i~d~~~  115 (253)
                      ....-.|+ |+++. ++..+.   +..|+++|+.+++...... ..+......|+ +++.++. .+.+  ..|.++|+.+
T Consensus       189 ~~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            45678999 78874 554333   3579999998876544332 44556677899 8876654 3333  4577788877


Q ss_pred             CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          116 KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       116 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      ++. ..+.....   ......|+| +++.|+..+..+ . .|.++|+.++..  ..+......  ...|+|+|. .|+..
T Consensus       267 g~~-~~LT~~~~---~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~~--~~~~SPDG~-~Ia~~  336 (419)
T PRK04043        267 KTL-TQITNYPG---IDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGKN--NSSVSTYKN-YIVYS  336 (419)
T ss_pred             CcE-EEcccCCC---ccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCCc--CceECCCCC-EEEEE
Confidence            652 22322221   233457999 887777666432 2 478888876542  222211111  248999995 55544


Q ss_pred             c-CC--------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          194 G-DD--------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       194 ~-~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      + ..        ..|.+.|+.++...        .+... .......|+|+|+.++-..
T Consensus       337 ~~~~~~~~~~~~~~I~v~d~~~g~~~--------~LT~~-~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        337 SRETNNEFGKNTFNLYLISTNSDYIR--------RLTAN-GVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             EcCCCcccCCCCcEEEEEECCCCCeE--------ECCCC-CCcCCeEECCCCCEEEEEE
Confidence            4 32        36777887766422        12211 2233578999998766433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=2.2e-09  Score=80.17  Aligned_cols=160  Identities=8%  Similarity=0.117  Sum_probs=110.6

Q ss_pred             EEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----eeeeee
Q 035558            8 LATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----AVDTQL   81 (253)
Q Consensus         8 l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~   81 (253)
                      +++|.+ .|-+-++.++     ..+.+. -+     +.|.++.|. ..+++++.|..+|.|..+|++..     .+.+.+
T Consensus       228 fs~G~sqqv~L~nvetg-----~~qsf~-sk-----sDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETG-----HQQSFQ-SK-----SDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             ecccccceeEEEEeecc-----cccccc-cc-----hhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence            445555 7777777773     344444 33     679999998 78999999999999999999865     233444


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCee--EEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLV--RLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                       -|...|+++...  ++.+|++.+.+|+|++||++.-++..-+....+|...-.  -+..++ ....+++++.|.. .++
T Consensus       296 -yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcy-tRi  372 (425)
T KOG2695|consen  296 -YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCY-TRI  372 (425)
T ss_pred             -EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeE-EEE
Confidence             389999999887  788999999999999999998776444444444432222  233455 5566777777766 999


Q ss_pred             EECCCCCCCeeeecc----cccceeEEEEe
Q 035558          158 LDIRFPTLPVVELQR----HQASVNAIAWA  183 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~----~~~~i~~~~~~  183 (253)
                      |.++.+.. +.+++.    -+..+.+++|.
T Consensus       373 Wsl~~ghL-l~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  373 WSLDSGHL-LCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EecccCce-eeccCCCCccccccccceehh
Confidence            99998663 444332    12234555554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.98  E-value=2e-07  Score=73.27  Aligned_cols=223  Identities=10%  Similarity=0.165  Sum_probs=142.3

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe---------------
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT---------------   66 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---------------   66 (253)
                      +.|.+|++... .|.+|.-...    ..+..+. |      ..|..+.|+ |++.+|.+-+..+.               
T Consensus        42 P~G~~l~~~~~~~V~~~~g~~~----~~l~~~~-~------~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~  109 (561)
T COG5354          42 PLGTYLFSEHAAGVECWGGPSK----AKLVRFR-H------PDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNN  109 (561)
T ss_pred             CcchheehhhccceEEccccch----hheeeee-c------CCceecccC-cccceeeeeccCCccChhhccCCccccCc
Confidence            45777777776 9999998775    4333433 3      358899999 89999998765443               


Q ss_pred             EEEEeccCceeeeeeeccccc--EE-EEEec-CCCeEEEEeCCCcEEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCC-
Q 035558           67 CTIWDIEREAVDTQLIAHDKE--VY-DIAWG-GVGVFASVSADGSVRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQ-  140 (253)
Q Consensus        67 i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~-  140 (253)
                      +.+||..++..+..+.....+  .+ -+.|+ ++.++|-. ....++++++ +.... .....  .....+....|+|. 
T Consensus       110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~--lr~~gi~dFsisP~~  185 (561)
T COG5354         110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN--LRPVGILDFSISPEG  185 (561)
T ss_pred             eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh--ccccceeeEEecCCC
Confidence            899999999998888765555  55 67888 77777655 3446999998 43311 11111  11237888899984 


Q ss_pred             CCCEEEEE-----EeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-----------CCCcEEEEec
Q 035558          141 DPRYMATI-----IMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-----------DDSQALIWDL  204 (253)
Q Consensus       141 ~~~~l~~~-----~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------~dg~i~iwd~  204 (253)
                      +...|+.-     +.... +++|.+..... +.+..--...=..+.|++.|. +|+.--           ....++++++
T Consensus       186 n~~~la~~tPEk~~kpa~-~~i~sIp~~s~-l~tk~lfk~~~~qLkW~~~g~-~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         186 NHDELAYWTPEKLNKPAM-VRILSIPKNSV-LVTKNLFKVSGVQLKWQVLGK-YLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCceEEEEccccCCCCcE-EEEEEccCCCe-eeeeeeEeecccEEEEecCCc-eEEEEEEEeeecccceeccceEEEEee
Confidence            33344432     23444 88888875442 322222222335688999884 443221           1356788888


Q ss_pred             cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE--cCCcEEEEE
Q 035558          205 SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA--FSTKLQILR  252 (253)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~i~vw~  252 (253)
                      +....+.       . ....++|...+|.|.++.+..++  ....+.+++
T Consensus       263 ~e~~i~V-------~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         263 TERSIPV-------E-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             cccccce-------e-ccccccceeeeecccCCceeEEecccccceeecc
Confidence            8555432       2 25688999999999998877544  344444443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=2.4e-08  Score=77.23  Aligned_cols=203  Identities=17%  Similarity=0.139  Sum_probs=143.8

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccC---ceeeeeeecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER---EAVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKE  117 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~  117 (253)
                      +.|+.+..  ...+++.+++.||.++.|.-..   -+.+..+..|-..|.+++.+ ++.++.+.+. |..++++|+.+-.
T Consensus        10 d~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen   10 DVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            56666553  4678999999999999998654   23555667889999999999 9999999887 9999999998766


Q ss_pred             CeeeeeccCCCCCCeeEEEeeCCCC---CEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          118 HSTIIYESSEPDTPLVRLGWNKQDP---RYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       118 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      ....+....- .   ..+.|....+   ..++++..+.+.+.++|-+... +......-|..+|..+.++|-++ .+++.
T Consensus        88 minmiKL~~l-P---g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSi  162 (558)
T KOG0882|consen   88 MINMIKLVDL-P---GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSI  162 (558)
T ss_pred             hhhhcccccC-C---CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeec
Confidence            4322222111 1   1223322122   2566666666569999987655 33455566999999999999994 88888


Q ss_pred             cCCCcEEEEeccC-CCCCCC-------CCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          194 GDDSQALIWDLSS-MGQPVE-------GGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       194 ~~dg~i~iwd~~~-~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ...|.|.-|.... .+.|..       ................++.|+|++..+...+.|..|+++.
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~  229 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV  229 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence            8999999998874 222210       0011122233466788999999999888888999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.95  E-value=2.5e-09  Score=55.57  Aligned_cols=37  Identities=30%  Similarity=0.691  Sum_probs=34.6

Q ss_pred             CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEe
Q 035558          166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD  203 (253)
Q Consensus       166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd  203 (253)
                      ++..+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            477899999999999999998 6999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=3.7e-07  Score=72.69  Aligned_cols=219  Identities=12%  Similarity=0.202  Sum_probs=128.3

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----CeEEEEeccCcee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----TTCTIWDIEREAV   77 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~   77 (253)
                      |+.++|.-.. +|.||+...-    .++..-.-.-     ..|....|+ |.++.||--...     ..+.+-.+-+++.
T Consensus       316 DdKy~Arm~~~sisIyEtpsf----~lld~Kslki-----~gIr~Fsws-P~~~llAYwtpe~~~~parvtL~evPs~~~  385 (698)
T KOG2314|consen  316 DDKYFARMTGNSISIYETPSF----MLLDKKSLKI-----SGIRDFSWS-PTSNLLAYWTPETNNIPARVTLMEVPSKRE  385 (698)
T ss_pred             CCceeEEeccceEEEEecCce----eeecccccCC-----ccccCcccC-CCcceEEEEcccccCCcceEEEEecCccce
Confidence            5566776654 8888887652    2221111111     568899999 677777644321     1344555555555


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEE----------eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASV----------SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                      +++-+-+.-.=..|-|- +|.+|+.-          +.--.+.|+.++....+......   ...|...+|-| .|+.++
T Consensus       386 iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP-~gdkF~  461 (698)
T KOG2314|consen  386 IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEP-HGDKFA  461 (698)
T ss_pred             eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeecc-CCCeEE
Confidence            54443332222334455 67766542          11123667777766533222222   23788999999 676665


Q ss_pred             EEEeC--CCeEEEEECCC-CCCC--eeeecccccceeEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCe
Q 035558          147 TIIMD--SAKVVVLDIRF-PTLP--VVELQRHQASVNAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPI  218 (253)
Q Consensus       147 ~~~~~--~~~i~~~d~~~-~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~  218 (253)
                      +-+..  ..++.+|-..+ ...+  +..+.  ....+.+.|+|.| ++++.+.   ..|.+.++|+.......       
T Consensus       462 vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k~-------  531 (698)
T KOG2314|consen  462 VISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLKD-------  531 (698)
T ss_pred             EEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhhh-------
Confidence            54432  23489998874 2222  33333  3567899999999 6776654   57999999998533221       


Q ss_pred             eeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558          219 LAYTAGAEIEQLQWSSSQPDWVAIAFST  246 (253)
Q Consensus       219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~  246 (253)
                      .........+.+.|.|.|++++++++..
T Consensus       532 ~~~~eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  532 TASPEHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ccCccccccccceECCCCCEEEEeeehh
Confidence            1222234567889999999988776543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=3.9e-07  Score=72.45  Aligned_cols=149  Identities=20%  Similarity=0.363  Sum_probs=102.8

Q ss_pred             EEEecCCCCCEEEEEe--CC---------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEE--EeCCCcEEEEE
Q 035558           47 SFDWNEAEPRRIGTSS--ID---------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFAS--VSADGSVRVFD  112 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~--~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~--~~~dg~i~i~d  112 (253)
                      .+.|++....+|+.++  -|         .++++.+++.....-.+. ..++|.++.|+ +++.|++  |-.=.++.+||
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn  300 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN  300 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence            5778843333443332  22         367787877444443343 47899999999 8776554  45677899999


Q ss_pred             cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeE
Q 035558          113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHI  190 (253)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  190 (253)
                      ++..-    +..  -.+++=+++-|+| .+++++.+|.++  +.+-+||..+.+ .+..+..-.  -+-..|+|+| .++
T Consensus       301 lr~~~----v~d--f~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K-~i~~~~a~~--tt~~eW~PdG-e~f  369 (566)
T KOG2315|consen  301 LRGKP----VFD--FPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRK-LIAKFKAAN--TTVFEWSPDG-EYF  369 (566)
T ss_pred             CCCCE----eEe--CCCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchh-hccccccCC--ceEEEEcCCC-cEE
Confidence            98653    332  2234667899999 999999888754  239999999844 466666433  3557999999 588


Q ss_pred             EEecC------CCcEEEEeccCC
Q 035558          191 CTAGD------DSQALIWDLSSM  207 (253)
Q Consensus       191 ~~~~~------dg~i~iwd~~~~  207 (253)
                      +|+..      |+.++||+....
T Consensus       370 lTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  370 LTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEeccccEEecCCeEEEEecCc
Confidence            87764      799999998653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=1.4e-06  Score=70.20  Aligned_cols=171  Identities=8%  Similarity=0.048  Sum_probs=100.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEE-EeCC--CeEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGT-SSID--TTCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|.++|+.++    +...... ..     +......|+ |+++.++. .+.+  ..|.++|+.+++... +..+......
T Consensus       214 ~Iyv~dl~tg----~~~~lt~-~~-----g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~  281 (419)
T PRK04043        214 TLYKYNLYTG----KKEKIAS-SQ-----GMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVN  281 (419)
T ss_pred             EEEEEECCCC----cEEEEec-CC-----CcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCc
Confidence            7889998775    3332222 22     445567899 78876654 3333  468888887776433 3333333345


Q ss_pred             EEec-CCCeEEEEeC-CC--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--------CeEEEE
Q 035558           91 IAWG-GVGVFASVSA-DG--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--------AKVVVL  158 (253)
Q Consensus        91 ~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--------~~i~~~  158 (253)
                      ..|+ +++.|+..+. .+  .|.+.|+.+++..+....  +.    ....|+| +++.++......        ..|.+.
T Consensus       282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~----~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~  354 (419)
T PRK04043        282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK----NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLI  354 (419)
T ss_pred             cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC----cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEE
Confidence            5799 8887776653 33  577778877664333221  11    1248999 888877766542        248888


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc--EEEEeccC
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ--ALIWDLSS  206 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~  206 (253)
                      |+.++.  ...+... .......|+|||..++++....+.  +.+.++..
T Consensus       355 d~~~g~--~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        355 STNSDY--IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             ECCCCC--eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            987654  3444332 233458899999533344433333  45555544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.93  E-value=9.8e-10  Score=88.28  Aligned_cols=217  Identities=18%  Similarity=0.307  Sum_probs=137.7

Q ss_pred             eEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----CCCeEEEEeccCc--eee
Q 035558            7 LLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----IDTTCTIWDIERE--AVD   78 (253)
Q Consensus         7 ~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~--~~~   78 (253)
                      +++.|..  .|-+-.+.....  .-.....+|.     .+.++++|++-+.+.||+|-    .|..+.|||+.++  .+.
T Consensus        72 IlavG~atG~I~l~s~r~~hd--Ss~E~tp~~a-----r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk  144 (783)
T KOG1008|consen   72 ILAVGSATGNISLLSVRHPHD--SSAEVTPGYA-----RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK  144 (783)
T ss_pred             hhhhccccCceEEeecCCccc--ccceeccccc-----ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc
Confidence            4555553  666666655311  1223344455     78999999977788888873    3567999999876  222


Q ss_pred             e--eeec-ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           79 T--QLIA-HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        79 ~--~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      .  .+.+ ......+++|. +..++++|.....+.++|++........    -....+..+...|..++++++.. ++. 
T Consensus       145 e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnTk~vqG~tVdp~~~nY~cs~~-dg~-  218 (783)
T KOG1008|consen  145 ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNTKYVQGITVDPFSPNYFCSNS-DGD-  218 (783)
T ss_pred             cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhhhhcccceecCCCCCceeccc-cCc-
Confidence            1  2222 23455688999 8999999999999999999954311111    11114555677777778887765 776 


Q ss_pred             EEEEE-CCCCCCCeeeeccccc----ceeEEEEecCCCCeEEEecC-CCcEEEEeccCCCCCCC---------CCCCCee
Q 035558          155 VVVLD-IRFPTLPVVELQRHQA----SVNAIAWAPHSSCHICTAGD-DSQALIWDLSSMGQPVE---------GGLDPIL  219 (253)
Q Consensus       155 i~~~d-~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~---------~~~~~~~  219 (253)
                      |.+|| .++.+.++..+...+.    .+..++|+|...-++++... .++|+.+|+..-..+.-         ....+..
T Consensus       219 iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q  298 (783)
T KOG1008|consen  219 IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQ  298 (783)
T ss_pred             eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeeccccccc
Confidence            99999 6666666555554333    38999999976557777775 58999999875432210         0001111


Q ss_pred             eccCCCceeEEEEcCCC
Q 035558          220 AYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~  236 (253)
                      ..+.-+.|....||+..
T Consensus       299 ~~~~~s~I~~f~wH~~s  315 (783)
T KOG1008|consen  299 PNSQCSGIDFFTWHTAS  315 (783)
T ss_pred             ccccccceeecCcCcCC
Confidence            11223567788888765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.92  E-value=6.8e-09  Score=53.91  Aligned_cols=38  Identities=21%  Similarity=0.525  Sum_probs=35.5

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD   71 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd   71 (253)
                      +++.++++|.     .+|++++|+ +++++|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~-----~~i~~i~~~-~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHS-----SSINSIAWS-PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSS-----SSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCC-----CcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence            5678899999     899999999 8899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=1.6e-09  Score=90.31  Aligned_cols=161  Identities=11%  Similarity=0.128  Sum_probs=115.3

Q ss_pred             cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558           27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD  105 (253)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  105 (253)
                      ++..+.++.|.     ...+|++|+ ...++|+.|+..|.|+++++.+|.......+|..+|+-+.=+ ++..+++.+.-
T Consensus      1091 Fr~w~~frd~~-----~~fTc~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1091 FRSWRSFRDET-----ALFTCIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             cccchhhhccc-----cceeeEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc
Confidence            45566777777     889999999 889999999999999999999999999999999999999999 88877765543


Q ss_pred             C--cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-ec---ccccceeE
Q 035558          106 G--SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-LQ---RHQASVNA  179 (253)
Q Consensus       106 g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~---~~~~~i~~  179 (253)
                      .  ...+|++.....  ....    -..-.++.|+. ....-+.|..... ..+||+.+... +.+ +.   +....-+.
T Consensus      1165 S~PlsaLW~~~s~~~--~~Hs----f~ed~~vkFsn-~~q~r~~gt~~d~-a~~YDvqT~~~-l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGG--PRHS----FDEDKAVKFSN-SLQFRALGTEADD-ALLYDVQTCSP-LQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred             cCchHHHhccccccC--cccc----ccccceeehhh-hHHHHHhcccccc-eEEEecccCcH-HHHhcCcchhhhhhccc
Confidence            3  477898876321  1111    11455788886 3333344444444 99999998764 333 22   12223477


Q ss_pred             EEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          180 IAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      ..|+|+. .+++   .||  .+||++..+
T Consensus      1236 a~FsP~D-~LIl---ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1236 AHFSPCD-TLIL---NDG--VLWDVRIPE 1258 (1516)
T ss_pred             cccCCCc-ceEe---eCc--eeeeeccHH
Confidence            8999987 4554   355  479998865

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.89  E-value=1.3e-06  Score=69.88  Aligned_cols=218  Identities=13%  Similarity=-0.015  Sum_probs=122.3

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      +.+++...+ .|..||..++    +.+...+............+....   +..++.+..+|.+..+|.++++.+.....
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG----~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~~  218 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATG----ERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQRV  218 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCC----ceeeEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence            444554455 8888888776    444444332200000000011111   24677888889999999999886654321


Q ss_pred             cc----cc---EE----EEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558           84 HD----KE---VY----DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus        84 ~~----~~---v~----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      ..    ..   ..    ...+ .+..++.++.+|.+..+|.++++..   ......  .......   .+..+++++.++
T Consensus       219 ~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~---W~~~~~--~~~~p~~---~~~~vyv~~~~G  289 (377)
T TIGR03300       219 ALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVL---WKRDAS--SYQGPAV---DDNRLYVTDADG  289 (377)
T ss_pred             ccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEE---EeeccC--CccCceE---eCCEEEEECCCC
Confidence            10    00   00    0111 3567888888999999999988632   221111  1112222   456777777788


Q ss_pred             CeEEEEECCCCCCCeeeeccc-ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce-eEE
Q 035558          153 AKVVVLDIRFPTLPVVELQRH-QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI-EQL  230 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~  230 (253)
                      . +..+|..+++. +...... .....+...  .+ ..+++++.+|.+.++|..+++...       ....+...+ .+.
T Consensus       290 ~-l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~~~-------~~~~~~~~~~~sp  357 (377)
T TIGR03300       290 V-VVALDRRSGSE-LWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSFVA-------RLKTDGSGIASPP  357 (377)
T ss_pred             e-EEEEECCCCcE-EEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCCEEE-------EEEcCCCccccCC
Confidence            7 99999987653 3333111 111222222  24 378899999999999998876432       222233222 222


Q ss_pred             EEcCCCCceEEEEcCCcEEEEE
Q 035558          231 QWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++. ++ .++.++.||.|..|+
T Consensus       358 ~~~-~~-~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       358 VVV-GD-GLLVQTRDGDLYAFR  377 (377)
T ss_pred             EEE-CC-EEEEEeCCceEEEeC
Confidence            333 33 488899999887763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.86  E-value=6.5e-07  Score=78.59  Aligned_cols=204  Identities=16%  Similarity=0.273  Sum_probs=133.3

Q ss_pred             CeeEEEecCCCCCEEEEEeC---C---CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC---CCcEEEEEc
Q 035558           44 PLTSFDWNEAEPRRIGTSSI---D---TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDL  113 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~  113 (253)
                      .-..++|- .||.++|+.+.   .   ..++||+.+ |+...+-..-.+--.+++|. .|+++|+...   ...|.+|.-
T Consensus       211 ~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr  288 (928)
T PF04762_consen  211 GRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER  288 (928)
T ss_pred             CceEEEEC-CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec
Confidence            44578998 99999998764   2   579999987 55443333223334568999 9999988765   345666665


Q ss_pred             CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe-eeecc-cccceeEEEEecCCCCeEE
Q 035558          114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQR-HQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~l~  191 (253)
                      +..+.-............|..++|++ ++..||+.-.+ . |.+|-..+..--+ +.+.. ....+..+.|+|..+..|.
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~-~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLED-R-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecC-C-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence            54433222222223445899999999 99999986644 4 9999987754212 22221 2234555999998887788


Q ss_pred             EecCCCcEEEEecc----CCCC--C------------------C--CCCCCCe--eeccCCCceeEEEEcCCCCceEEEE
Q 035558          192 TAGDDSQALIWDLS----SMGQ--P------------------V--EGGLDPI--LAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       192 ~~~~dg~i~iwd~~----~~~~--~------------------~--~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ....+|.+..++..    ....  +                  .  ...++|.  .......+|..++|++++..+++..
T Consensus       366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~  445 (928)
T PF04762_consen  366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLT  445 (928)
T ss_pred             EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEE
Confidence            88877877665542    2110  0                  0  0001121  2223478899999999988788999


Q ss_pred             cCCcEEEEE
Q 035558          244 FSTKLQILR  252 (253)
Q Consensus       244 ~~~~i~vw~  252 (253)
                      .|+.+.+|.
T Consensus       446 ~d~~l~~~~  454 (928)
T PF04762_consen  446 SDGSLSIYE  454 (928)
T ss_pred             CCCCEEEEE
Confidence            999999886

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=1e-06  Score=73.07  Aligned_cols=173  Identities=13%  Similarity=0.104  Sum_probs=116.1

Q ss_pred             CceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +..++-|.-  .|++.+.+..     . .+...|.     ..      . .+|.++++|+.||+|.|-.+-+.+....+.
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~-----~-~~~~~~s-----~~------~-~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGN-----P-KTNFDHS-----SS------I-LEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             cceeeeccccceEEEEecCCc-----c-ccccccc-----cc------c-cCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            345555553  6777776652     2 3333343     21      3 679999999999999999988887776655


Q ss_pred             cccccEEEEEec-C-----CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           83 AHDKEVYDIAWG-G-----VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        83 ~~~~~v~~~~~~-~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                       ...++.+++++ +     .+.+++|+..| +.++.-+--...... .....+++|.++.|   .+++||=++..|  |+
T Consensus       111 -f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W---~g~lIAWand~G--v~  182 (846)
T KOG2066|consen  111 -FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW---RGNLIAWANDDG--VK  182 (846)
T ss_pred             -cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe---cCcEEEEecCCC--cE
Confidence             45688899887 4     56899999999 777754322211122 23455679999999   578888887666  99


Q ss_pred             EEECCCCCCCeeeecc-c-----ccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          157 VLDIRFPTLPVVELQR-H-----QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~-~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      +||+.+.+. +..++. +     ......+.|.++.  .|+.|= ..+|+|..++..
T Consensus       183 vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW-~d~v~i~~I~~~  235 (846)
T KOG2066|consen  183 VYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDED--RLVIGW-GDSVKICSIKKR  235 (846)
T ss_pred             EEeccccce-eeccCCCCCCCCcccCCCceEecCCC--eEEEec-CCeEEEEEEecc
Confidence            999987553 333222 1     2234568888875  566665 447999988843

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=8.6e-07  Score=74.08  Aligned_cols=195  Identities=12%  Similarity=0.146  Sum_probs=124.5

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccccc-EEEEEec-CCCeEEEEeCCCc-----EEEEEcCCC
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKE-VYDIAWG-GVGVFASVSADGS-----VRVFDLRDK  116 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~-~~~~l~~~~~dg~-----i~i~d~~~~  116 (253)
                      .|.+  |+ +++..++.|+.+|.|.+.+-. .+.++.++.+... |..+-.. ..++|++.+.|+.     +++||++..
T Consensus        27 ~isc--~~-s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   27 AISC--CS-SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceeE--Ec-CCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            4444  44 778899999999998887653 4455777777766 4443333 4468888777654     999999754


Q ss_pred             CC---eeee-----ec--cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC---CCCCCeeeecccccceeEEEEe
Q 035558          117 EH---STII-----YE--SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR---FPTLPVVELQRHQASVNAIAWA  183 (253)
Q Consensus       117 ~~---~~~~-----~~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~  183 (253)
                      +.   +..+     ..  .+....++.+++.+. +-+.+|+|-.+|. |..+.-.   .......-......+|+.+++.
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~-V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGL-VICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcE-EEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            21   2222     22  222356889999998 6777777777776 8777432   1111122222345799999999


Q ss_pred             cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .++...++++ .-..|.+|.+.... |.     ......|+..+++.++++....+++++. ..+.+++
T Consensus       181 ~d~~s~lFv~-Tt~~V~~y~l~gr~-p~-----~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~  241 (933)
T KOG2114|consen  181 SDGKSVLFVA-TTEQVMLYSLSGRT-PS-----LKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYD  241 (933)
T ss_pred             cCCceeEEEE-ecceeEEEEecCCC-cc-----eeeeccCCccceeeecCCCCccEEEecC-ceEEEEc
Confidence            9984323333 34679999998544 43     2346678889999999887654555443 3455553

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.81  E-value=2.3e-09  Score=86.22  Aligned_cols=198  Identities=14%  Similarity=0.220  Sum_probs=130.3

Q ss_pred             CCeeEEEecC-CCCCEEEEEeCCCeEEEEeccCcee--eeeeecccccEEEEEec--CCCeEEEEeC----CCcEEEEEc
Q 035558           43 GPLTSFDWNE-AEPRRIGTSSIDTTCTIWDIEREAV--DTQLIAHDKEVYDIAWG--GVGVFASVSA----DGSVRVFDL  113 (253)
Q Consensus        43 ~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~~l~~~~~----dg~i~i~d~  113 (253)
                      ..+.|+++.- .+...++.|..+|.|-+-.++...-  -...+++..+.++++|+  |.+.||.|-.    |-.+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4566777652 2335788999999999988765432  23345678899999999  7888888743    667999999


Q ss_pred             CCCC--CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEE
Q 035558          114 RDKE--HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       114 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  191 (253)
                      .+.-  +...............+++|.. +.+++++|..... ++++|+|........+  .+..+..+...|-.+.+++
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~-~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS-VHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             ccccCCCccccccccccccCcccccccc-Ccchhhcccccch-hhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence            8762  1111111112233566888885 7788888887777 9999999543222222  3456777888885445777


Q ss_pred             EecCCCcEEEEe-ccCCCCCCCCCCCCeeeccC-----CCceeEEEEcCCCCceEEEEc--CCcEEEEE
Q 035558          192 TAGDDSQALIWD-LSSMGQPVEGGLDPILAYTA-----GAEIEQLQWSSSQPDWVAIAF--STKLQILR  252 (253)
Q Consensus       192 ~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~--~~~i~vw~  252 (253)
                      +-. ||.|.+|| .++.+.+.       ....|     ...+..++|.|....+++...  .+.|+.++
T Consensus       213 s~~-dg~iAiwD~~rnienpl-------~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  213 SNS-DGDIAIWDTYRNIENPL-------QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             ccc-cCceeeccchhhhccHH-------HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            666 99999999 55555443       22222     225899999998776665433  34455554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=4.4e-06  Score=70.03  Aligned_cols=188  Identities=13%  Similarity=0.150  Sum_probs=118.1

Q ss_pred             eEEeecCcEEEEEccCCccccceeeeecCCCCccccCC-eeEEEecCCCCCEEEEEeCCC-----eEEEEeccCce----
Q 035558            7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGP-LTSFDWNEAEPRRIGTSSIDT-----TCTIWDIEREA----   76 (253)
Q Consensus         7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~----   76 (253)
                      .+|.|+...+||-++..   .+....++.+.     .. |..+..- ...++|++.+.|+     .|++|+++..+    
T Consensus        37 ~vvigt~~G~V~~Ln~s---~~~~~~fqa~~-----~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   37 SVVIGTADGRVVILNSS---FQLIRGFQAYE-----QSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEEeeccccEEEeccc---ceeeehheecc-----hhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            44444433344444433   25557778777     45 4444333 4446788877665     48999987531    


Q ss_pred             --eee--eeec-----ccccEEEEEec-CCCeEEEEeCCCcEEEEEcC--CCCCeeeeeccCCCCCCeeEEEeeCCCCCE
Q 035558           77 --VDT--QLIA-----HDKEVYDIAWG-GVGVFASVSADGSVRVFDLR--DKEHSTIIYESSEPDTPLVRLGWNKQDPRY  144 (253)
Q Consensus        77 --~~~--~~~~-----~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  144 (253)
                        ++.  .+.+     ...++.+++.+ +-..++.|-.+|.|..+.-+  .....+..... ..+.+|+.+++.. ++..
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-~~~~pITgL~~~~-d~~s  185 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-RGKEPITGLALRS-DGKS  185 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-cCCCCceeeEEec-CCce
Confidence              221  1112     35678899999 98999999999999988432  22222233333 3345999999987 6655


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      ++.+..... |.+|.+.........+..|...++|..+++..+ .+++++ +..+.+|+....+
T Consensus       186 ~lFv~Tt~~-V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  186 VLFVATTEQ-VMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             eEEEEecce-eEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEec-CceEEEEcCCCcc
Confidence            333344455 999999854422445777888999999998764 344444 3568999887543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.80  E-value=8.2e-06  Score=65.35  Aligned_cols=219  Identities=12%  Similarity=-0.023  Sum_probs=117.9

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      +.+++.+.+ .+..+|..++    +.+.......      .+.+.-.  ..+..++.++.+|.|+.+|.++++.+..+..
T Consensus       106 ~~v~v~~~~g~l~ald~~tG----~~~W~~~~~~------~~~~~p~--v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDG----KELWRAKLSS------EVLSPPL--VANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCC----cEeeeeccCc------eeecCCE--EECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            334444445 8888888776    4444333221      1211100  1245677778899999999999987766653


Q ss_pred             ccccEE-----EEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-CCCCCCe---eEEEeeC-CCCCEEEEEEeCCC
Q 035558           84 HDKEVY-----DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES-SEPDTPL---VRLGWNK-QDPRYMATIIMDSA  153 (253)
Q Consensus        84 ~~~~v~-----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i---~~~~~~~-~~~~~l~~~~~~~~  153 (253)
                      ......     .... .+..++.+..+|.+..+|.++++..-..... ......+   ..+.-+| -.+..+++++.++.
T Consensus       174 ~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~  252 (377)
T TIGR03300       174 VTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR  252 (377)
T ss_pred             CCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE
Confidence            222111     1111 2456778888999999999888632211100 0000000   0000011 02456777777887


Q ss_pred             eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC-CCceeEEEE
Q 035558          154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA-GAEIEQLQW  232 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~  232 (253)
                       +..+|.++++. +..... . .......  .+ ..++.++.||.+..+|..+++..-       ..... .....+...
T Consensus       253 -l~a~d~~tG~~-~W~~~~-~-~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W-------~~~~~~~~~~ssp~i  318 (377)
T TIGR03300       253 -VAALDLRSGRV-LWKRDA-S-SYQGPAV--DD-NRLYVTDADGVVVALDRRSGSELW-------KNDELKYRQLTAPAV  318 (377)
T ss_pred             -EEEEECCCCcE-EEeecc-C-CccCceE--eC-CEEEEECCCCeEEEEECCCCcEEE-------ccccccCCccccCEE
Confidence             99999987653 333321 1 1122222  34 378888899999999998876332       00000 111111112


Q ss_pred             cCCCCceEEEEcCCcEEEEE
Q 035558          233 SSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~  252 (253)
                        .+..+++++.++.+.+++
T Consensus       319 --~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       319 --VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             --ECCEEEEEeCCCEEEEEE
Confidence              234577777788777775

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.80  E-value=7.2e-06  Score=61.17  Aligned_cols=215  Identities=14%  Similarity=0.032  Sum_probs=120.7

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW   93 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~   93 (253)
                      .|..||..++    +.+....-...  . ....+...  ..+..+++++.++.|..||..+++.+..... ..++.....
T Consensus         4 ~l~~~d~~tG----~~~W~~~~~~~--~-~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~   73 (238)
T PF13360_consen    4 TLSALDPRTG----KELWSYDLGPG--I-GGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV   73 (238)
T ss_dssp             EEEEEETTTT----EEEEEEECSSS--C-SSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE
T ss_pred             EEEEEECCCC----CEEEEEECCCC--C-CCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee
Confidence            6788888776    55555432110  0 22222222  2466777788999999999999998877663 222111112


Q ss_pred             cCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC-CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc
Q 035558           94 GGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD-TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR  172 (253)
Q Consensus        94 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  172 (253)
                      ..+..++.+..++.+..+|..+++..-......... .......... .+..++++..++. |..+|.++++. +.....
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-l~~~d~~tG~~-~w~~~~  150 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGK-LVALDPKTGKL-LWKYPV  150 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSE-EEEEETTTTEE-EEEEES
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCc-EEEEecCCCcE-EEEeec
Confidence            246666777788899999999988544422211111 1111222222 3677777777777 99999998764 444433


Q ss_pred             cccc----------eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          173 HQAS----------VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       173 ~~~~----------i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      ....          +..-....++  .++.++.++.+..+|+++++..        .... ...+..+ ....+..++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~~tg~~~--------w~~~-~~~~~~~-~~~~~~~l~~~  218 (238)
T PF13360_consen  151 GEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDLATGEKL--------WSKP-ISGIYSL-PSVDGGTLYVT  218 (238)
T ss_dssp             STT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEETTTTEEE--------EEEC-SS-ECEC-EECCCTEEEEE
T ss_pred             CCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEECCCCCEE--------EEec-CCCccCC-ceeeCCEEEEE
Confidence            2211          1122222233  6666777775444498887621        1111 2223332 23455566666


Q ss_pred             EcCCcEEEEEC
Q 035558          243 AFSTKLQILRV  253 (253)
Q Consensus       243 ~~~~~i~vw~l  253 (253)
                      +.++.+..|++
T Consensus       219 ~~~~~l~~~d~  229 (238)
T PF13360_consen  219 SSDGRLYALDL  229 (238)
T ss_dssp             ETTTEEEEEET
T ss_pred             eCCCEEEEEEC
Confidence            68888888874

...

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.80  E-value=5.3e-06  Score=66.87  Aligned_cols=112  Identities=14%  Similarity=0.206  Sum_probs=79.9

Q ss_pred             eeEEEecCCCCCEEEEE----eCCCeE----EEEeccCceee----eeeecccccEEEEEec-CCCeEEEEeCCCcEEEE
Q 035558           45 LTSFDWNEAEPRRIGTS----SIDTTC----TIWDIEREAVD----TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVF  111 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~----~~dg~i----~vwd~~~~~~~----~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~  111 (253)
                      ..++.|+-.++..+.+.    +.+|.+    .+|+....+..    ..+ ..+..|.+.+++ +.+.++.|+.||.|.+|
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            35777874455666554    334432    45666544321    122 467889999999 99999999999999999


Q ss_pred             EcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC
Q 035558          112 DLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT  164 (253)
Q Consensus       112 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  164 (253)
                      |...+.....     ...-..+.++|+| ++.++++|+..|. +.+||+.-..
T Consensus       287 D~~~~~t~~~-----ka~~~P~~iaWHp-~gai~~V~s~qGe-lQ~FD~ALsp  332 (545)
T PF11768_consen  287 DTTRGVTLLA-----KAEFIPTLIAWHP-DGAIFVVGSEQGE-LQCFDMALSP  332 (545)
T ss_pred             EcCCCeeeee-----eecccceEEEEcC-CCcEEEEEcCCce-EEEEEeecCc
Confidence            9987642211     2223678899999 9999999999998 9999987544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.76  E-value=1.7e-06  Score=69.57  Aligned_cols=145  Identities=11%  Similarity=0.219  Sum_probs=95.2

Q ss_pred             ccEEEEEec--CCCeEEEE----eCCCc----EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           86 KEVYDIAWG--GVGVFASV----SADGS----VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        86 ~~v~~~~~~--~~~~l~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ....++.|+  ++..+.+.    +.+|.    -.+|++..++...........++.+.+++++| +...++.|+.||. |
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgS-i  283 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGS-I  283 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCe-E
Confidence            344667777  55556554    23443    34566665543222222224455899999999 8999999999999 9


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC---CCCCCC------eeeccCCCc
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV---EGGLDP------ILAYTAGAE  226 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~------~~~~~~~~~  226 (253)
                      .+||.....   .......-.++.++|+|+| .++++|+.-|.+.+||+.-.....   .+...|      ...+.+...
T Consensus       284 iLyD~~~~~---t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~  359 (545)
T PF11768_consen  284 ILYDTTRGV---TLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSS  359 (545)
T ss_pred             EEEEcCCCe---eeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcch
Confidence            999987643   3333344567889999999 599999999999999997543211   111111      122345677


Q ss_pred             eeEEEEcCCC
Q 035558          227 IEQLQWSSSQ  236 (253)
Q Consensus       227 v~~~~~~~~~  236 (253)
                      +..+.|.+..
T Consensus       360 L~~iqW~~~~  369 (545)
T PF11768_consen  360 LVHIQWAPAP  369 (545)
T ss_pred             hheeEeccCC
Confidence            7888998543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=9.6e-08  Score=74.02  Aligned_cols=195  Identities=14%  Similarity=0.145  Sum_probs=136.5

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCceeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~   79 (253)
                      ...+++.+++ | .++.|.-..- ...+.+..+..|.     ..|.+++.+ .++.++.+.+. |..++++|+++-..+.
T Consensus        18 tka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL-----~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin   90 (558)
T KOG0882|consen   18 TKAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHL-----GVILSLAVS-YDGWLFRSVEDPDHSVKVFDVENFDMIN   90 (558)
T ss_pred             ehhheEEeeecchhhhhcCCCCc-cceeehhhhHHHH-----HHHHhhhcc-ccceeEeeccCcccceeEEEeeccchhh
Confidence            3455677777 5 9999986542 2235566677777     888999988 88999999777 9999999998776554


Q ss_pred             eeecccccEEEEEec--CCC---eEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           80 QLIAHDKEVYDIAWG--GVG---VFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~--~~~---~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      -++- ......+.|.  .+.   .++ +.-.++.+.++|-....+.... ....|..+|..+.++| .+..+++....|-
T Consensus        91 miKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-fkklH~sPV~~i~y~q-a~Ds~vSiD~~gm  167 (558)
T KOG0882|consen   91 MIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-FKKLHFSPVKKIRYNQ-AGDSAVSIDISGM  167 (558)
T ss_pred             hccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-ecccccCceEEEEeec-cccceeeccccce
Confidence            3331 1222333444  331   333 3446889999998877644333 3345667999999999 8888888877777


Q ss_pred             eEEEEECCC-CCCC-------------eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          154 KVVVLDIRF-PTLP-------------VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       154 ~i~~~d~~~-~~~~-------------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                       |.-|.... .+.|             +..+........++.|+|++ ..+.+-+.|..|+++++.+++.
T Consensus       168 -VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  168 -VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             -eEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchh
Confidence             99998773 1111             11122334567899999999 5899989999999999998873

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=6e-07  Score=74.28  Aligned_cols=195  Identities=9%  Similarity=0.086  Sum_probs=133.3

Q ss_pred             CCCCCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC--CCC-CEEEEEeCCCeEEEEeccC
Q 035558            1 ECQKPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEP-RRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         1 sp~~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~~l~~~~~dg~i~vwd~~~   74 (253)
                      ||+...++.+.+|   .|-+||....    ..+..++.|.     .++..++|-|  ++. ..|++-....+|.+|+..+
T Consensus        74 S~~~~~lliAsaD~~GrIil~d~~~~----s~~~~l~~~~-----~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt  144 (1062)
T KOG1912|consen   74 SPSSSQLLIASADISGRIILVDFVLA----SVINWLSHSN-----DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT  144 (1062)
T ss_pred             CccccceeEEeccccCcEEEEEehhh----hhhhhhcCCC-----cchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence            3454555555555   9999999887    6677788887     8899999864  223 5666667778999999999


Q ss_pred             ceeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCe----eeeeccCCC----------------CC--
Q 035558           75 EAVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHS----TIIYESSEP----------------DT--  130 (253)
Q Consensus        75 ~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~----------------~~--  130 (253)
                      |+.............|+.+.  +.+.+..-+..|.+.+.+.-...++    +.++....+                ..  
T Consensus       145 G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~  224 (1062)
T KOG1912|consen  145 GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP  224 (1062)
T ss_pred             CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence            99888877666677788888  8888888888888887766433211    111110010                00  


Q ss_pred             -------CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC-eEEEecCCCcEEEE
Q 035558          131 -------PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC-HICTAGDDSQALIW  202 (253)
Q Consensus       131 -------~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~iw  202 (253)
                             ....++|+| .-+.++....... +.++|++-.. ++....-..+.+.-+.+-|+..+ .|++...||.+.+|
T Consensus       225 ~sa~fity~a~faf~p-~~rn~lfi~~pre-llv~dle~~~-~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  225 ASAYFITYCAQFAFSP-HWRNILFITFPRE-LLVFDLEYEC-CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             cchhHHHHHHhhhcCh-hhhceEEEEeccc-eEEEcchhhc-eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence                   122367788 4444444455555 9999998744 46666656666677888887633 78889999999999


Q ss_pred             eccCC
Q 035558          203 DLSSM  207 (253)
Q Consensus       203 d~~~~  207 (253)
                      -.+..
T Consensus       302 vrk~~  306 (1062)
T KOG1912|consen  302 VRKEE  306 (1062)
T ss_pred             Eeecc
Confidence            76653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=4.2e-07  Score=69.58  Aligned_cols=163  Identities=13%  Similarity=0.162  Sum_probs=105.4

Q ss_pred             EEEEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCE
Q 035558           67 CTIWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRY  144 (253)
Q Consensus        67 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  144 (253)
                      +++.+..+.+..+-+..+...|.+++|+  +..++..++.+.+|++.|+++.......   ..+ ..+++++|+-++.++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy---~a~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY---IAY-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe---ecc-CCceeeeeccCCcce
Confidence            4444444444555566788899999999  5558999999999999999998643333   233 389999999977788


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCeeeeccc--ccceeEEEEe------cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558          145 MATIIMDSAKVVVLDIRFPTLPVVELQRH--QASVNAIAWA------PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD  216 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  216 (253)
                      |+.|-.+|. |.+||+|..+.++..+.+.  ..+|..++.-      +.+ .+|+..+.+  +..|++.....-.    .
T Consensus       251 IYaGl~nG~-VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~----p  322 (463)
T KOG1645|consen  251 IYAGLQNGM-VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECL----P  322 (463)
T ss_pred             eEEeccCce-EEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCC----C
Confidence            888888888 9999999988766666542  2344444332      334 255555544  4556655432111    1


Q ss_pred             CeeeccCCCceeEEEEcCCCCceEE
Q 035558          217 PILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       217 ~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      +....+..+...+++.++..+.++.
T Consensus       323 ~vlele~pG~cismqy~~~snh~l~  347 (463)
T KOG1645|consen  323 CVLELEPPGICISMQYHGVSNHLLL  347 (463)
T ss_pred             cccccCCCcceeeeeecCccceEEE
Confidence            1122233556667777665555554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.65  E-value=2.2e-05  Score=58.52  Aligned_cols=184  Identities=10%  Similarity=0.025  Sum_probs=110.3

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee-
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL-   81 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-   81 (253)
                      ++.++++..+ .|..||..++    +.+.......      ++.....  ..+..++.++.++.|+.+|.++++.+... 
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG----~~~W~~~~~~------~~~~~~~--~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~  103 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTG----KVLWRFDLPG------PISGAPV--VDGGRVYVGTSDGSLYALDAKTGKVLWSIY  103 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTS----EEEEEEECSS------CGGSGEE--EETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCC----CEEEEeeccc------cccceee--ecccccccccceeeeEecccCCcceeeeec
Confidence            4555555455 9999999887    6666555422      1111111  23566777778889999999999988774 


Q ss_pred             eccc---ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-CCCe-------eEEEeeCCCCCEEEEEE
Q 035558           82 IAHD---KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP-DTPL-------VRLGWNKQDPRYMATII  149 (253)
Q Consensus        82 ~~~~---~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~i-------~~~~~~~~~~~~l~~~~  149 (253)
                      ....   ......... .++.++.+..++.|..+|.++++..-........ ...+       ..+.+.  ++ .+..++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~  180 (238)
T PF13360_consen  104 LTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSS  180 (238)
T ss_dssp             E-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEEC
T ss_pred             cccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEc
Confidence            3221   111223333 5788888888999999999999743333221111 1111       223332  33 777777


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .++. +..+|+.+++. +....  ...+..+ ..+.+ ..|+.++.++.+..||+++++
T Consensus       181 ~~g~-~~~~d~~tg~~-~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  181 GDGR-VVAVDLATGEK-LWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             CTSS-EEEEETTTTEE-EEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTE
T ss_pred             CCCe-EEEEECCCCCE-EEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCC
Confidence            7776 44449988763 33222  2223331 34555 377777799999999999976

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.61  E-value=8.8e-05  Score=55.20  Aligned_cols=200  Identities=8%  Similarity=0.061  Sum_probs=111.0

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc-cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC--
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH-DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH--  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--  118 (253)
                      ..+..++|+|.++.++++....+.|..++.+ ++.+..+.-. .+..-.+++. ++.++++--.++.+.++++.....  
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            5699999995556677788888889888875 7777766532 3567888998 676666665689999999944321  


Q ss_pred             -ee---eee--ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC--CCCCee--ee------cccccceeEEEE
Q 035558          119 -ST---IIY--ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--PTLPVV--EL------QRHQASVNAIAW  182 (253)
Q Consensus       119 -~~---~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~~~~~~--~~------~~~~~~i~~~~~  182 (253)
                       ..   .+.  .....+..+-.++|+|..+.++ ++-...- ..+|.++.  ....+.  ..      ......+.++++
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCC-hhhEEEccccCccceeeccccccccccceeccccceEE
Confidence             11   111  1123445788999999444444 4455544 66666553  111111  11      112345788999


Q ss_pred             ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc-------CCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT-------AGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +|..+++++....+..|..+|.. ++...     ...+..       .-.+.-.|+|.++|. +..++.-+...+++
T Consensus       179 ~p~t~~lliLS~es~~l~~~d~~-G~~~~-----~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f~  248 (248)
T PF06977_consen  179 DPRTGHLLILSDESRLLLELDRQ-GRVVS-----SLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRFE  248 (248)
T ss_dssp             ETTTTEEEEEETTTTEEEEE-TT---EEE-----EEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEECCC-CCEEE-----EEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEeC
Confidence            99876788888889999999843 33111     011111       124577899999996 66677777666653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.60  E-value=3.4e-05  Score=61.22  Aligned_cols=205  Identities=15%  Similarity=0.226  Sum_probs=121.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCee-EEEecCCCCCEEEEEeCCCeEEEEeccCceee-eeeecc-cccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT-SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD-TQLIAH-DKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~-~~~v~~   90 (253)
                      .+.+||..++    ..+..+.+....   .... -+.|+ .+..++|-- ....++|+++ +.... ..+... ...|..
T Consensus       109 ~~~vwd~~sg----~iv~sf~~~~q~---~~~Wp~~k~s-~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~d  178 (561)
T COG5354         109 NVFVWDIASG----MIVFSFNGISQP---YLGWPVLKFS-IDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILD  178 (561)
T ss_pred             ceeEEeccCc----eeEeeccccCCc---ccccceeeee-ecchhhhhh-ccCeEEEEec-CCccccCchhhccccceee
Confidence            4899999998    777777776621   1133 56777 667666544 3457999997 33311 111111 245777


Q ss_pred             EEec---CCCeEEE-----EeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-----------C
Q 035558           91 IAWG---GVGVFAS-----VSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-----------D  151 (253)
Q Consensus        91 ~~~~---~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------~  151 (253)
                      ..|+   ++..|+.     .+.++.+++|.+..+...........   .-..+.|++ .++++++--.           .
T Consensus       179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~---~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfge  254 (561)
T COG5354         179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV---SGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGE  254 (561)
T ss_pred             EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee---cccEEEEec-CCceEEEEEEEeeecccceecc
Confidence            7777   3334443     45678899999986653332222111   234688888 6666554211           1


Q ss_pred             CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE-ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558          152 SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT-AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL  230 (253)
Q Consensus       152 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  230 (253)
                      .. +++++++....++.  ..-.++|...+|.|.+.++.+. |-.+-.+.++|++..-          .......+=+.+
T Consensus       255 sn-Lyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl----------~~~~Pe~~rNT~  321 (561)
T COG5354         255 SN-LYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL----------RFYFPEQKRNTI  321 (561)
T ss_pred             ce-EEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccce----------EEecCCcccccc
Confidence            23 88888885443332  2557899999999998544333 3578889999988742          222223333445


Q ss_pred             EEcCCCCceEEEEcC
Q 035558          231 QWSSSQPDWVAIAFS  245 (253)
Q Consensus       231 ~~~~~~~~~~~~~~~  245 (253)
                      .|+|.+++++.++.+
T Consensus       322 ~fsp~~r~il~agF~  336 (561)
T COG5354         322 FFSPHERYILFAGFD  336 (561)
T ss_pred             cccCcccEEEEecCC
Confidence            556665555554444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.60  E-value=3.9e-05  Score=59.92  Aligned_cols=103  Identities=18%  Similarity=0.033  Sum_probs=73.6

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC----------CCcEEEEEcCCCCCeeeeeccCCC----C
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA----------DGSVRVFDLRDKEHSTIIYESSEP----D  129 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~----~  129 (253)
                      ++|.+.|..+++.+..+..-..+- .+ ++ +++.++.+..          +..|.+||..+.+....+.....+    .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            799999999999888887433333 34 78 7777766654          789999999999866555432221    1


Q ss_pred             CCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCCeeeec
Q 035558          130 TPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLPVVELQ  171 (253)
Q Consensus       130 ~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~  171 (253)
                      .....++++| +++++++...+ ...|.+.|+.+.+. +.++.
T Consensus       105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~  145 (352)
T TIGR02658       105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMD  145 (352)
T ss_pred             CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcE-EEEEe
Confidence            1344789999 99999887755 55599999998663 44444

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.58  E-value=8.9e-05  Score=54.80  Aligned_cols=188  Identities=10%  Similarity=0.114  Sum_probs=100.3

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCC-CCccccCCeeEEEecCCC-----CCEEEEEeCCCeEEEEeccC
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGN-KNSEYCGPLTSFDWNEAE-----PRRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~   74 (253)
                      +++.+||.+..  +|++||+...    .+...-..+ ...+...+|-.+.|-+..     ...|+.-..+|.++-|-+..
T Consensus        53 pD~tlLa~a~S~G~i~vfdl~g~----~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~  128 (282)
T PF15492_consen   53 PDCTLLAYAESTGTIRVFDLMGS----ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV  128 (282)
T ss_pred             CCCcEEEEEcCCCeEEEEecccc----eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence            45567776654  9999999863    222221222 122333678888886432     22455566788887776532


Q ss_pred             c-----eeeeeee---cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558           75 E-----AVDTQLI---AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM  145 (253)
Q Consensus        75 ~-----~~~~~~~---~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  145 (253)
                      +     +....+.   .+...|.++.|+ ..++|+.|+....      +.+.       .......+++-..-...+.+.
T Consensus       129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------s~a~~~GLtaWRiL~~~Pyyk  195 (282)
T PF15492_consen  129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------SKASSCGLTAWRILSDSPYYK  195 (282)
T ss_pred             ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-------ccccccCceEEEEcCCCCcEE
Confidence            2     2333333   246789999999 7777777764322      0000       001111222222211112222


Q ss_pred             EEEEeCCC------eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          146 ATIIMDSA------KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       146 ~~~~~~~~------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      -+...+..      +-.++.+-+.+. ..........|..|..+||| .+|++...+|.|.+|++.+...
T Consensus       196 ~v~~~~~~~~~~~~~~~~~~~~~~~~-fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  196 QVTSSEDDITASSKRRGLLRIPSFKF-FSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             EccccCccccccccccceeeccceee-eeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence            22222111      012222221110 01112235679999999999 6999999999999999998764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.57  E-value=0.00014  Score=56.91  Aligned_cols=188  Identities=12%  Similarity=0.088  Sum_probs=109.3

Q ss_pred             CCEEEEEeC----------CCeEEEEeccCc----eeeeee--ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           55 PRRIGTSSI----------DTTCTIWDIERE----AVDTQL--IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        55 ~~~l~~~~~----------dg~i~vwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      ..+++.|+.          .|.|.++++...    ..+..+  ....++|++++-.++.++++.  .+.|.+|++...+.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~--g~~l~v~~l~~~~~  119 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV--GNKLYVYDLDNSKT  119 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE--TTEEEEEEEETTSS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee--cCEEEEEEccCccc
Confidence            567777753          289999999874    122211  235788999887744433333  47899999998872


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCC
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      .......... ..+.++...   ++++++|....+ +.++..+.....+..+..  ....++++.|-+++ ..++.+..+
T Consensus       120 l~~~~~~~~~-~~i~sl~~~---~~~I~vgD~~~s-v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~  193 (321)
T PF03178_consen  120 LLKKAFYDSP-FYITSLSVF---KNYILVGDAMKS-VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKD  193 (321)
T ss_dssp             EEEEEEE-BS-SSEEEEEEE---TTEEEEEESSSS-EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETT
T ss_pred             chhhheecce-EEEEEEecc---ccEEEEEEcccC-EEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCC
Confidence            3333222222 256666654   568999988887 888755542222333322  34568889998777 489999999


Q ss_pred             CcEEEEeccCCCCCCCCC---CCCeeeccCCCceeEE---EEcCC--CC------ceEEEEcCCcEEE
Q 035558          197 SQALIWDLSSMGQPVEGG---LDPILAYTAGAEIEQL---QWSSS--QP------DWVAIAFSTKLQI  250 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~v~~~---~~~~~--~~------~~~~~~~~~~i~v  250 (253)
                      |.+.++............   ......+..+..|+++   ++.|.  +.      .++.++.+|.|.+
T Consensus       194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            999999887432111111   1122333457788888   55552  22      2777888888764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.51  E-value=0.00011  Score=59.32  Aligned_cols=216  Identities=12%  Similarity=0.020  Sum_probs=118.1

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCc----cccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNS----EYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      +.+++..++ .+..+|..++    +.+.........    ....++    .   .+..++.++.+|.+..+|.++++.+.
T Consensus       161 ~~v~v~~~~g~l~ald~~tG----~~~W~~~~~~~~~~~~~~~sP~----v---~~~~v~~~~~~g~v~a~d~~~G~~~W  229 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDG----AVKWTVNLDVPSLTLRGESAPA----T---AFGGAIVGGDNGRVSAVLMEQGQLIW  229 (394)
T ss_pred             CEEEEECCCCEEEEEEccCC----CEeeeecCCCCcccccCCCCCE----E---ECCEEEEEcCCCEEEEEEccCChhhh
Confidence            444444445 7888888776    444444322100    000111    1   12356667788999999999888665


Q ss_pred             eeeccc----c---cEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           80 QLIAHD----K---EVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        80 ~~~~~~----~---~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      ......    .   ....+...   .+..++.++.+|.+..+|..+++.   +......  ....+..   .+..+++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~~--~~~~~~~---~~~~vy~~~  301 (394)
T PRK11138        230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI---VWKREYG--SVNDFAV---DGGRIYLVD  301 (394)
T ss_pred             eeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE---EEeecCC--CccCcEE---ECCEEEEEc
Confidence            433110    0   00011111   355677778899999999998863   2221111  1112222   455677777


Q ss_pred             eCCCeEEEEECCCCCCCeeeeccc-ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRH-QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      .++. +..+|..+++. +-....- .....+....  + ..|+.++.||.+.+.|..+++...       ...-....+.
T Consensus       302 ~~g~-l~ald~~tG~~-~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~~~~-------~~~~~~~~~~  369 (394)
T PRK11138        302 QNDR-VYALDTRGGVE-LWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGRFVA-------QQKVDSSGFL  369 (394)
T ss_pred             CCCe-EEEEECCCCcE-EEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCCEEE-------EEEcCCCcce
Confidence            7887 99999987653 2222110 1112222222  3 378889999999999998876432       1111112222


Q ss_pred             -EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          229 -QLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       229 -~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                       +... .++ .++.++.++.+..+++
T Consensus       370 s~P~~-~~~-~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        370 SEPVV-ADD-KLLIQARDGTVYAITR  393 (394)
T ss_pred             eCCEE-ECC-EEEEEeCCceEEEEeC
Confidence             1222 233 5888899999988764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.45  E-value=0.00029  Score=53.49  Aligned_cols=201  Identities=12%  Similarity=0.031  Sum_probs=122.1

Q ss_pred             CeeEEEecCCCCCEEEEEeCCC-eEEEEeccCceeeeeeecccccEE--EEEec-CCCeEEEEe-----CCCcEEEEEcC
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDT-TCTIWDIEREAVDTQLIAHDKEVY--DIAWG-GVGVFASVS-----ADGSVRVFDLR  114 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~-~~~~l~~~~-----~dg~i~i~d~~  114 (253)
                      ....++.+|..+..++.+-.-| ...+||..+++....+....+.-.  .-.|+ ++++|++.-     ..|.|-+||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            3446778855777777777766 467899999988777654333322  45788 999998864     35889999999


Q ss_pred             CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE------------------eCCCeEEEEECCCCCCCee--ee--cc
Q 035558          115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII------------------MDSAKVVVLDIRFPTLPVV--EL--QR  172 (253)
Q Consensus       115 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~~~~~i~~~d~~~~~~~~~--~~--~~  172 (253)
                      ..-  ..+.+...+.-....+.+.| ++..|+++.                  .+.+ +.+.|.++++. +.  .+  ..
T Consensus        86 ~~~--~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~ps-L~~ld~~sG~l-l~q~~Lp~~~  160 (305)
T PF07433_consen   86 RGY--RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPS-LVYLDARSGAL-LEQVELPPDL  160 (305)
T ss_pred             CCc--EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCc-eEEEecCCCce-eeeeecCccc
Confidence            332  34444444444566788999 786666652                  1122 44455555542 22  24  33


Q ss_pred             cccceeEEEEecCCCCeEEEecCCCc-------EEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEc
Q 035558          173 HQASVNAIAWAPHSSCHICTAGDDSQ-------ALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAF  244 (253)
Q Consensus       173 ~~~~i~~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~  244 (253)
                      |...|..+++.++| ..++..-..|.       +.+++....  +................+-+|++++++..++ ++-.
T Consensus       161 ~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr  237 (305)
T PF07433_consen  161 HQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR  237 (305)
T ss_pred             cccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence            67789999999998 34444333221       222222221  1100011112234467899999999997665 4446


Q ss_pred             CCcEEEEE
Q 035558          245 STKLQILR  252 (253)
Q Consensus       245 ~~~i~vw~  252 (253)
                      .+.+.+|+
T Consensus       238 Gg~~~~~d  245 (305)
T PF07433_consen  238 GGRVAVWD  245 (305)
T ss_pred             CCEEEEEE
Confidence            77888886

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=0.00015  Score=63.53  Aligned_cols=158  Identities=16%  Similarity=0.265  Sum_probs=99.1

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEec----cCc-------------------eeeeeeeccc--------------
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDI----ERE-------------------AVDTQLIAHD--------------   85 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~-------------------~~~~~~~~~~--------------   85 (253)
                      ..|.+++|+ +++..++..+..+++.+-.-    -..                   +....+++..              
T Consensus       110 ~GI~aaswS-~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  110 NGISAASWS-PDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             CceEEEeec-CCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            679999999 89999998888888766432    111                   1111122111              


Q ss_pred             -------ccEEEEEec-CCCeEEEE-----eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe--
Q 035558           86 -------KEVYDIAWG-GVGVFASV-----SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM--  150 (253)
Q Consensus        86 -------~~v~~~~~~-~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--  150 (253)
                             +.=+.+.|- +|+++++.     .....|++||-+ +.. ....  ....+--.+++|-| .|..+++-..  
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~s--e~~~~l~~~LsWkP-sgs~iA~iq~~~  263 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTS--EPVEGLQHSLSWKP-SGSLIAAIQCKT  263 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hccc--CcccccccceeecC-CCCeEeeeeecC
Confidence                   111348899 99999883     223789999987 321 1111  12222445799999 8888887643  


Q ss_pred             -CCCeEEEEECCCCCCC--eeeecccccceeEEEEecCCCCeEEE---ecCCCcEEEEeccCCC
Q 035558          151 -DSAKVVVLDIRFPTLP--VVELQRHQASVNAIAWAPHSSCHICT---AGDDSQALIWDLSSMG  208 (253)
Q Consensus       151 -~~~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~  208 (253)
                       ++. |.++.-.....-  ...+......+..++|+.+++ .|++   ......|++|-+.+..
T Consensus       264 sd~~-IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  264 SDSD-IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CCCc-EEEEecCCccccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence             334 888875432211  222333445599999999995 7776   4555569999888754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.37  E-value=0.00015  Score=63.41  Aligned_cols=199  Identities=15%  Similarity=0.217  Sum_probs=123.5

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEc----CCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDL----RDKE  117 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~----~~~~  117 (253)
                      ..|.++.|. .+.+.++.+..+|.|.+-|.++..... .-.-...|.+++|+ +++.++..+..+++.+-+-    -..+
T Consensus        69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             cceEEEEEe-cccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            589999999 888889999999999999888765322 22245789999999 9999998888777766432    1111


Q ss_pred             Ce-------------------eeeeccCC------------------CCCCeeEEEeeCCCCCEEEEEEe---CC-CeEE
Q 035558          118 HS-------------------TIIYESSE------------------PDTPLVRLGWNKQDPRYMATIIM---DS-AKVV  156 (253)
Q Consensus       118 ~~-------------------~~~~~~~~------------------~~~~i~~~~~~~~~~~~l~~~~~---~~-~~i~  156 (253)
                      ..                   ..+....+                  ....=+++.|-- +|.++|+...   .+ +.|+
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEE
Confidence            00                   00100000                  011223588876 8999998432   22 4599


Q ss_pred             EEECCCCCCCeeee-cccccceeEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          157 VLDIRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       157 ~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      +||.. +.  +... ....+.-.+++|-|.| .++++-.   .|+.|.+|.......-.    ..........++..++|
T Consensus       226 V~drE-g~--Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~----f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  226 VYDRE-GA--LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGE----FVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             Eeccc-ch--hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccc----cccCCcccccchheeee
Confidence            99977 22  1111 1122334579999998 4776543   56789999876544221    00111122334999999


Q ss_pred             cCCCCceEE---EEcCCcEEEEE
Q 035558          233 SSSQPDWVA---IAFSTKLQILR  252 (253)
Q Consensus       233 ~~~~~~~~~---~~~~~~i~vw~  252 (253)
                      +.++..++.   ......|++|-
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEE
Confidence            999874443   34444599995

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.36  E-value=1.6e-05  Score=65.40  Aligned_cols=157  Identities=10%  Similarity=0.091  Sum_probs=105.4

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      .|.--++. .++++++.|+.-|.+++|+...++....-. +-.+.+.....+ +..++|.|+..|.|.++-+....+...
T Consensus        35 ~v~lTc~d-st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVD-ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEee-cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            34333444 679999999999999999998776443222 334555666677 788899999999999998887654444


Q ss_pred             eecc---CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC---CCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558          122 IYES---SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP---TLPVVELQRHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       122 ~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      ++..   ..|...|++++|++ ++..+.+|...|. |..-.+...   ..+.+.+..-...|-.+.+...  .+|++...
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gk-v~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~--~LLVStl~  189 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGK-VVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS--YLLVSTLT  189 (726)
T ss_pred             eeeccccccCCceEEEEEecc-cccEEeecCCCce-EEEEEechhhhhccccceeeccCcceEEeecccc--eehHhhhh
Confidence            4322   23466999999999 9999999999998 887777651   1123444445667777776642  24444332


Q ss_pred             CCcEEEEeccCC
Q 035558          196 DSQALIWDLSSM  207 (253)
Q Consensus       196 dg~i~iwd~~~~  207 (253)
                        .-.+++++..
T Consensus       190 --r~~Lc~tE~e  199 (726)
T KOG3621|consen  190 --RCILCQTEAE  199 (726)
T ss_pred             --hhheeecchh
Confidence              2334555543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.34  E-value=0.00056  Score=55.30  Aligned_cols=194  Identities=12%  Similarity=0.132  Sum_probs=94.9

Q ss_pred             EEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce------eeeeeecccccE
Q 035558           15 LRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA------VDTQLIAHDKEV   88 (253)
Q Consensus        15 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~v   88 (253)
                      |++|+...     +++..+.-..     +.|.++.|. .+. .|+.-..||.++++|+....      .+....-....+
T Consensus        63 I~iys~sG-----~ll~~i~w~~-----~~iv~~~wt-~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i  130 (410)
T PF04841_consen   63 IQIYSSSG-----KLLSSIPWDS-----GRIVGMGWT-DDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRI  130 (410)
T ss_pred             EEEECCCC-----CEeEEEEECC-----CCEEEEEEC-CCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccc
Confidence            77777766     4444444333     578999998 544 45566789999999986333      011111111222


Q ss_pred             EEEEec-CCCeEEEEeCCCcEEEEEcCCCC-CeeeeeccCCCCC------CeeE-EEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           89 YDIAWG-GVGVFASVSADGSVRVFDLRDKE-HSTIIYESSEPDT------PLVR-LGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        89 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~------~i~~-~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ....+. +|-.++  ..++.+.+..--... ........+....      .... ..++. +....+....++. +.+.+
T Consensus       131 ~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~-i~~i~  206 (410)
T PF04841_consen  131 FAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGET-IYIID  206 (410)
T ss_pred             cccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCE-EEEEE
Confidence            222333 332223  334444443222211 1111111111000      0000 12333 3333333333333 55444


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      -....    .+. ..+++..|+.||++ +++|.-..+|.+.+....-.+...      ............+.|.-++
T Consensus       207 ~~~~~----~i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~------e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  207 ENSFK----QID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLC------EFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             ccccc----ccc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeE------EeecCcCCCCcEEEEECCC
Confidence            33211    122 24689999999999 699988899999888764433221      1111223455667776554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.31  E-value=0.00064  Score=54.89  Aligned_cols=184  Identities=14%  Similarity=0.010  Sum_probs=102.7

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +.+++.+.+ .+..+|..++    +.+...+...      .+.+ -..   .+..++.++.++.|..+|.++++.+....
T Consensus       121 ~~v~v~~~~g~l~ald~~tG----~~~W~~~~~~------~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDG----EVAWQTKVAG------EALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCC----CCcccccCCC------ceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            344444445 8999999887    5555444332      1111 111   24566777889999999999999877665


Q ss_pred             cccccE-----EEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-CCC---eeEEEeeC-CCCCEEEEEEeCC
Q 035558           83 AHDKEV-----YDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP-DTP---LVRLGWNK-QDPRYMATIIMDS  152 (253)
Q Consensus        83 ~~~~~v-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~---i~~~~~~~-~~~~~l~~~~~~~  152 (253)
                      .....+     ..-.. .+..++.++.+|.+..+|..+++..-........ ...   ...+.-+| -.+..+++++.++
T Consensus       188 ~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g  266 (394)
T PRK11138        188 LDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG  266 (394)
T ss_pred             CCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC
Confidence            321110     00011 2345677788999999999887632211100000 000   00111111 0234566667777


Q ss_pred             CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      . +..+|..+++. +.....  .....+..  .+ ..++.++.+|.+..+|..+++.
T Consensus       267 ~-l~ald~~tG~~-~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        267 N-LVALDLRSGQI-VWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             e-EEEEECCCCCE-EEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEECCCCcE
Confidence            7 99999988763 322221  11112222  24 3677788899999999988763

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.27  E-value=0.00021  Score=57.17  Aligned_cols=198  Identities=12%  Similarity=0.111  Sum_probs=102.6

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--c------ccccEEEEEec----C--C---CeEEEEeCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--A------HDKEVYDIAWG----G--V---GVFASVSAD  105 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~----~--~---~~l~~~~~d  105 (253)
                      ++|++++.+  +-.+++.|..+|.+.|.|++....+..-.  .      ....|+++.|.    .  +   -.+++|...
T Consensus        87 g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   87 GPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             -SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            789999986  67799999999999999998877655422  2      23467888887    2  2   268888999


Q ss_pred             CcEEEEEcCC-C-CCe--eeeeccCCCCCCeeEEE-eeCC--------------------CCCEEEEEEeCCCeEEEEEC
Q 035558          106 GSVRVFDLRD-K-EHS--TIIYESSEPDTPLVRLG-WNKQ--------------------DPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus       106 g~i~i~d~~~-~-~~~--~~~~~~~~~~~~i~~~~-~~~~--------------------~~~~l~~~~~~~~~i~~~d~  160 (253)
                      |.+.+|.+.- . ...  ........+.+++..+. ++..                    ...++++++ +.. ++++..
T Consensus       165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~-irv~~~  242 (395)
T PF08596_consen  165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESD-IRVFKP  242 (395)
T ss_dssp             SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE-EEEE-T
T ss_pred             CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccc-eEEEeC
Confidence            9999998852 1 111  11111112334554443 3221                    112444444 444 999998


Q ss_pred             CCCCCCeeeecccccceeEEEEe-----cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          161 RFPTLPVVELQRHQASVNAIAWA-----PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      .+.+...+.+ ........+.+-     ..+ ..|++-..+|.|++|.+...+......   .........+....++++
T Consensus       243 ~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~~~~---l~~~~d~~~~~~ssis~~  317 (395)
T PF08596_consen  243 PKSKGAHKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIKSVS---LPPPLDSRRLSSSSISRN  317 (395)
T ss_dssp             T---EEEEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEEEEE----SS---HHHHTT-EE-TT
T ss_pred             CCCcccceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhhccc---CCCccccccccccEECCC
Confidence            8766433333 222333444553     234 578888899999999999877443000   000112234456667888


Q ss_pred             CCceEEEEcCCcEEE
Q 035558          236 QPDWVAIAFSTKLQI  250 (253)
Q Consensus       236 ~~~~~~~~~~~~i~v  250 (253)
                      |. ++.-.....+.+
T Consensus       318 Gd-i~~~~gpsE~~l  331 (395)
T PF08596_consen  318 GD-IFYWTGPSEIQL  331 (395)
T ss_dssp             S--EEEE-SSSEEEE
T ss_pred             CC-EEEEeCcccEEE
Confidence            86 443333334433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.26  E-value=0.00048  Score=55.12  Aligned_cols=200  Identities=11%  Similarity=0.069  Sum_probs=108.4

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-------------------------------------------eee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV-------------------------------------------DTQ   80 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------------------------~~~   80 (253)
                      .|+.++|. ++..-|+.|...|.|-||.....+.                                           ...
T Consensus         3 ~v~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFA-PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEE-TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEec-CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            58899999 6667788899999999886543210                                           011


Q ss_pred             eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-----CCCCCCeeEEEeeC---C-CC---CEEEEE
Q 035558           81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES-----SEPDTPLVRLGWNK---Q-DP---RYMATI  148 (253)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~i~~~~~~~---~-~~---~~l~~~  148 (253)
                      +....++|++++.++-.+++.|.++|.+.+.|+|.+..+......     ......++++.|..   . ++   -.+++|
T Consensus        82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            122367899999988889999999999999999887633221111     12334678888862   1 22   356666


Q ss_pred             EeCCCeEEEEECCC-C-CC----CeeeecccccceeEEE-EecCC--------------------CCeEEEecCCCcEEE
Q 035558          149 IMDSAKVVVLDIRF-P-TL----PVVELQRHQASVNAIA-WAPHS--------------------SCHICTAGDDSQALI  201 (253)
Q Consensus       149 ~~~~~~i~~~d~~~-~-~~----~~~~~~~~~~~i~~~~-~~~~~--------------------~~~l~~~~~dg~i~i  201 (253)
                      ...|. +.+|.+-- . ..    .......+.++|..+. ++.+.                    +.++++++ +..+++
T Consensus       162 Tn~G~-v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~irv  239 (395)
T PF08596_consen  162 TNSGN-VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIRV  239 (395)
T ss_dssp             ETTSE-EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEE
T ss_pred             eCCCC-EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceEE
Confidence            66666 98887742 1 11    1111123445555554 32210                    12444444 678999


Q ss_pred             EeccCCCCCCCCCCCCeeeccCCCceeEEEEc-----CCCCceEEEEcCCcEEEEEC
Q 035558          202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS-----SSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +...+.+...       ..+........+.+-     ..+..|++...+|.++++.|
T Consensus       240 ~~~~~~k~~~-------K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  240 FKPPKSKGAH-------KSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             E-TT---EEE-------EE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             EeCCCCcccc-------eeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence            9888765432       223222233344442     24556778889999999864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.18  E-value=0.00046  Score=57.43  Aligned_cols=181  Identities=13%  Similarity=0.019  Sum_probs=103.7

Q ss_pred             CCCCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC----eEEEEeccC
Q 035558            2 CQKPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT----TCTIWDIER   74 (253)
Q Consensus         2 p~~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~   74 (253)
                      |++|..+...++   .+.+.|.++.    +....+.--.      ....+.++ +++.++++.+.+.    ++..-+..+
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etm----eV~~qV~Vdg------npd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e  269 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETM----EVAWQVMVDG------NLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAE  269 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccc----eEEEEEEeCC------CcccceEC-CCCCEEEEeccCcccCcceeeecccc
Confidence            345555544443   6777777764    4444443322      23456777 6788887775321    222222222


Q ss_pred             ceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC-----CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           75 EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD-----KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        75 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      ......+.-  ..+.  ++. ++++...  .++.|.+.|.++     .+....+...    .....+.++| ++++++++
T Consensus       270 ~d~~vvfni--~~ie--a~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG----KsPHGV~vSP-DGkylyVa  338 (635)
T PRK02888        270 RDWVVVFNI--ARIE--EAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP----KNPHGVNTSP-DGKYFIAN  338 (635)
T ss_pred             CceEEEEch--HHHH--HhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC----CCccceEECC-CCCEEEEe
Confidence            111111110  0000  222 4555444  367899999988     2222222221    2567799999 89988888


Q ss_pred             EeCCCeEEEEECCCCCCC-----------eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          149 IMDSAKVVVLDIRFPTLP-----------VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      +.-...+.++|+.+.+..           +.+..- .......+|.++| +...+..-|..|..|++..
T Consensus       339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence            775555999999875421           122222 2233457899998 5788888999999999986

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=0.00023  Score=60.43  Aligned_cols=70  Identities=16%  Similarity=0.260  Sum_probs=61.6

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR  114 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~  114 (253)
                      .+++++|+ |..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+ +|..++++..-|.+.+|...
T Consensus        61 hatSLCWH-pe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWH-PEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccC-hHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            35689999 777888999889999999998777666666899999999999 99999999999999999876

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.15  E-value=2.5e-05  Score=64.28  Aligned_cols=119  Identities=8%  Similarity=0.047  Sum_probs=83.5

Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      .+.--+++. ++.+++.|+..|. +++|+-..+........+-.+.+.....+++. .++|.|+..|.|.++.+.....+
T Consensus        35 ~v~lTc~ds-t~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   35 RVKLTCVDA-TEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             eEEEEEeec-CCceEEEecccce-EEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCC
Confidence            344444555 7899999999998 99999776543233333344556667788887 68889999999999998874332


Q ss_pred             CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ......+ .-..|...|++++|++++..+++|...|.|..-+|
T Consensus       112 ~~~~~t~-~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  112 DLDYVTP-CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             cceeecc-ccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            2100001 11237889999999999999999999998876543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.15  E-value=0.00016  Score=62.08  Aligned_cols=146  Identities=16%  Similarity=0.056  Sum_probs=99.7

Q ss_pred             CCCEEEEE-eCCCeEEEEeccCceeeeeeeccccc-EEEEEec------CCCeEEEEeCCCcEEEEEcCCCCCeeee--e
Q 035558           54 EPRRIGTS-SIDTTCTIWDIEREAVDTQLIAHDKE-VYDIAWG------GVGVFASVSADGSVRVFDLRDKEHSTII--Y  123 (253)
Q Consensus        54 ~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~  123 (253)
                      +.++|+.- .....|+-.|++.|+.+..+..+... |.+++-.      .+..-+.|-.+..+..||.|-.......  .
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            44454443 34578999999999999999877644 6666432      2445667777888999999975421111  1


Q ss_pred             ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEe
Q 035558          124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD  203 (253)
Q Consensus       124 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd  203 (253)
                      ..-.......|++-+  ...+||+|+.+|. |++||- .+......+.+-..+|..|..+.|| +++++.+ +..+.+++
T Consensus       572 k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~-IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  572 KQYSSKNNFSCFATT--EDGYIAVGSNKGD-IRLYDR-LGKRAKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLID  645 (794)
T ss_pred             cccccCCCceEEEec--CCceEEEEeCCCc-EEeecc-cchhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEE
Confidence            111223356666655  5678999999999 999994 3344455667778899999999999 4655444 56777887


Q ss_pred             cc
Q 035558          204 LS  205 (253)
Q Consensus       204 ~~  205 (253)
                      ..
T Consensus       646 t~  647 (794)
T PF08553_consen  646 TL  647 (794)
T ss_pred             Ee
Confidence            63

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=2e-05  Score=64.11  Aligned_cols=93  Identities=15%  Similarity=0.350  Sum_probs=74.6

Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee-EEEEecCCCCeEEEecCCCcEEEEeccCCCC
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN-AIAWAPHSSCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      .+..+.|+| .-.+||.+..+|. +.+..+.. + .+..+..+...++ +++|.||| ++|+.|-.||+|++.|++++..
T Consensus        22 ~i~~~ewnP-~~dLiA~~t~~ge-lli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   22 NIKRIEWNP-KMDLIATRTEKGE-LLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ceEEEEEcC-ccchhheeccCCc-EEEEEecc-c-eeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence            678899999 8899999999998 88888773 3 3777776777777 99999999 7999999999999999999875


Q ss_pred             CCCCCCCCeeeccCCCceeEEEEcC
Q 035558          210 PVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      ..      .....-...|.++-|.|
T Consensus        97 l~------~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LV------SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ee------ccccccccchheeeccc
Confidence            43      12334456777777764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.10  E-value=6.4e-06  Score=69.62  Aligned_cols=152  Identities=12%  Similarity=0.057  Sum_probs=104.6

Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-e
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-K  154 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~  154 (253)
                      ....++.|+...++++|+ +.++|+.|+..|.|+++++.++..   ......|...|+.+.=+. ++..+++.+.... .
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---cccccccccccccccccC-CcceeeeeccccCch
Confidence            445667788899999999 999999999999999999999873   233356777888888877 6666666554443 4


Q ss_pred             EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      ..+|++.....+.+.+..    -.++.|+... +.-+.|..-....+||+++.......   .....+....=+...|+|
T Consensus      1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~ty---lt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTY---LTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred             HHHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHh---cCcchhhhhhccccccCC
Confidence            679999876566666654    3467888765 45556666677899999998744300   000111122225667888


Q ss_pred             CCCceE
Q 035558          235 SQPDWV  240 (253)
Q Consensus       235 ~~~~~~  240 (253)
                      +...++
T Consensus      1241 ~D~LIl 1246 (1516)
T KOG1832|consen 1241 CDTLIL 1246 (1516)
T ss_pred             CcceEe
Confidence            876443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.09  E-value=0.00086  Score=52.54  Aligned_cols=174  Identities=10%  Similarity=0.081  Sum_probs=103.1

Q ss_pred             CeEEEEeccCceeeeeee-cccccEEEEEec----C----CCeEEEEeC----------CCcEEEEEcCCC----CCeee
Q 035558           65 TTCTIWDIEREAVDTQLI-AHDKEVYDIAWG----G----VGVFASVSA----------DGSVRVFDLRDK----EHSTI  121 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~----~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~  121 (253)
                      ..|++.|..+.+.+..+. .....+.+++..    +    ..+++.|..          .|.|.++++...    .....
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            357888888777665554 123344444433    2    356776643          288999999984    23333


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc--ceeEEEEecCCCCeEEEecCCCcE
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQA  199 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i  199 (253)
                      +... ..+++|++++--  .+. ++++. .+. |.+|++...+. +.....+..  .+.++...  + .+++.|.....+
T Consensus        82 i~~~-~~~g~V~ai~~~--~~~-lv~~~-g~~-l~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv  151 (321)
T PF03178_consen   82 IHST-EVKGPVTAICSF--NGR-LVVAV-GNK-LYVYDLDNSKT-LLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSV  151 (321)
T ss_dssp             EEEE-EESS-EEEEEEE--TTE-EEEEE-TTE-EEEEEEETTSS-EEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSE
T ss_pred             EEEE-eecCcceEhhhh--CCE-EEEee-cCE-EEEEEccCccc-chhhheecceEEEEEEecc--c-cEEEEEEcccCE
Confidence            3332 235588888765  344 44433 344 99999987662 333333333  45555444  5 489999988889


Q ss_pred             EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .++.........    ...........++++.+-+++..++++..++.+.+++
T Consensus       152 ~~~~~~~~~~~l----~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~  200 (321)
T PF03178_consen  152 SLLRYDEENNKL----ILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLR  200 (321)
T ss_dssp             EEEEEETTTE-E----EEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred             EEEEEEccCCEE----EEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence            988666532211    0112222456788999986666788999999998876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=3.4e-05  Score=62.82  Aligned_cols=93  Identities=15%  Similarity=0.224  Sum_probs=75.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEE-EEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVY-DIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      ..|.-+.|+ |.-.++|.+..+|.|.+..+. -+.+.++..+..+++ +++|. +|+.++.|-.||+|++.|+.++....
T Consensus        21 ~~i~~~ewn-P~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWN-PKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEc-CccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            457789999 889999999999999999988 666777876777777 99999 99999999999999999999987433


Q ss_pred             eeeccCCCCCCeeEEEeeC
Q 035558          121 IIYESSEPDTPLVRLGWNK  139 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~  139 (253)
                      ..  ....+..|.++-|.+
T Consensus        99 ~~--~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SF--LFSVETDISKGIWDR  115 (665)
T ss_pred             cc--ccccccchheeeccc
Confidence            21  223344777888864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.06  E-value=0.0028  Score=51.56  Aligned_cols=209  Identities=14%  Similarity=0.190  Sum_probs=105.9

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      |++++++.+++ .-.|+.....    +....          +.-....|. . .+.+|+-..++.|.++.--..+....+
T Consensus        42 pngr~v~V~g~geY~iyt~~~~----r~k~~----------G~g~~~vw~-~-~n~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   42 PNGRFVLVCGDGEYEIYTALAW----RNKAF----------GSGLSFVWS-S-RNRYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             TTSSEEEEEETTEEEEEETTTT----EEEEE----------EE-SEEEE--T-SSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred             CCCCEEEEEcCCEEEEEEccCC----ccccc----------CceeEEEEe-c-CccEEEEECCCeEEEEEcCccccceEE
Confidence            46777777776 7777764331    22221          233478888 5 555777777888999632223322233


Q ss_pred             ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      +. ...+..+-  .|.+|+..+.+ .|.+||+.+++....+   ...  +|..+.|++ ++++++..+.+.  +.+++..
T Consensus       106 ~~-~~~~~~If--~G~LL~~~~~~-~i~~yDw~~~~~i~~i---~v~--~vk~V~Ws~-~g~~val~t~~~--i~il~~~  173 (443)
T PF04053_consen  106 KL-PFSVEKIF--GGNLLGVKSSD-FICFYDWETGKLIRRI---DVS--AVKYVIWSD-DGELVALVTKDS--IYILKYN  173 (443)
T ss_dssp             ---SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEE---SS---E-EEEEE-T-TSSEEEEE-S-S--EEEEEE-
T ss_pred             cC-CcccceEE--cCcEEEEECCC-CEEEEEhhHcceeeEE---ecC--CCcEEEEEC-CCCEEEEEeCCe--EEEEEec
Confidence            31 11233332  37777776655 8999999999744444   221  478999999 899999887665  6666543


Q ss_pred             CC---------C-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558          162 FP---------T-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ  231 (253)
Q Consensus       162 ~~---------~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  231 (253)
                      ..         - .....+..-...|.+.+|..+  -++.|...  .++-  +-.+...        ....-..++.=+.
T Consensus       174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkY--l~~Ge~~--------~i~~ld~~~yllg  239 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKY--LVNGETG--------IIAHLDKPLYLLG  239 (443)
T ss_dssp             HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEE--EETTEEE--------EEEE-SS--EEEE
T ss_pred             chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEE--EEcCCcc--------eEEEcCCceEEEE
Confidence            22         0 013333333567889999876  25666543  6665  4444321        2222255666677


Q ss_pred             EcCCCCceEEEEcCCcEEEEEC
Q 035558          232 WSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..|....+.....+..+..+.+
T Consensus       240 y~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  240 YLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             EETTTTEEEEE-TT--EEEEE-
T ss_pred             EEccCCEEEEEECCCCEEEEEE
Confidence            7776667778888877776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.001  Score=53.82  Aligned_cols=156  Identities=16%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             CCeeEEEecCCCCCEEEEE---eCC-CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEE-eCCCc--EEEEEcC
Q 035558           43 GPLTSFDWNEAEPRRIGTS---SID-TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASV-SADGS--VRVFDLR  114 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~---~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~dg~--i~i~d~~  114 (253)
                      ..+..-+|+ +++..++-.   ... ..+.++++++++....+. ..+.-..-+|+ +++.|+.+ ..||.  |.+.|+.
T Consensus       193 ~~~~~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         193 SLILTPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             cceeccccC-cCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            456667788 666654433   222 469999999887544443 23333446888 77766654 45665  5566777


Q ss_pred             CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE
Q 035558          115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       115 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  192 (253)
                      +....+ +....+   .-..=.|+| +|+.++..+..++  .|.++|.....  ...+......-..-.|+|+|. +++.
T Consensus       271 ~~~~~~-Lt~~~g---i~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~~p~~SpdG~-~i~~  342 (425)
T COG0823         271 GKNLPR-LTNGFG---INTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPVWSPDGD-KIVF  342 (425)
T ss_pred             CCccee-cccCCc---cccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCcCccCCCCCC-EEEE
Confidence            666332 222222   223557899 8888887766554  35666666544  233333333333678999995 5554


Q ss_pred             ec-CCCc--EEEEeccCCC
Q 035558          193 AG-DDSQ--ALIWDLSSMG  208 (253)
Q Consensus       193 ~~-~dg~--i~iwd~~~~~  208 (253)
                      .+ .+|.  |.+.|+.+..
T Consensus       343 ~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EeccCCceeeEEeccCCCC
Confidence            44 3455  5556555544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.05  E-value=0.0003  Score=60.41  Aligned_cols=139  Identities=12%  Similarity=0.076  Sum_probs=87.5

Q ss_pred             CCCeEEEE-eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe----eCCCCCEEEEEEeCCCeEEEEECCCCCCCeee
Q 035558           95 GVGVFASV-SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW----NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE  169 (253)
Q Consensus        95 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~  169 (253)
                      +.++|+.- .....|+-.|++.++.+.......  ..+|..++=    ...++.....|-.++. +..||.|-....+..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~--~~~v~~~~p~~K~aqlt~e~tflGls~n~-lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHD--DIPVVDIAPDSKFAQLTNEQTFLGLSDNS-LFRIDPRLSGNKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCC--CcceeEecccccccccCCCceEEEECCCc-eEEeccCCCCCceee
Confidence            44444443 456789999999988443332211  123444432    1112334455555666 999999975432222


Q ss_pred             ecc----cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558          170 LQR----HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       170 ~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                      -..    ......|++-..+|  +||+|+.+|.||+||--. ....      ..+.+-+.+|..|..+.+|+++++.+..
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g-~~AK------T~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLG-KRAK------TALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             ccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccc-hhhh------hcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            111    23457788888887  899999999999999433 2221      3455678999999999999977766644

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.04  E-value=0.0009  Score=42.69  Aligned_cols=100  Identities=13%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             eeEEEecCCC---CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           45 LTSFDWNEAE---PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        45 v~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      |+++++...+   .+.|++|+.|..|++|+-+  +.+..+. ..+.|+++.-.....|+.+..+|+|-+|+-...     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-----   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-----   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce-----
Confidence            5666665433   3689999999999999864  4565565 356788888775688999999999999976432     


Q ss_pred             eeccCCCCCCeeEEEeeCCCC---CEEEEEEeCCC
Q 035558          122 IYESSEPDTPLVRLGWNKQDP---RYMATIIMDSA  153 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~~~  153 (253)
                      +...... ..+.++++..-++   ..|++|=.+|.
T Consensus        74 lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGk  107 (111)
T PF14783_consen   74 LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGK  107 (111)
T ss_pred             eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCe
Confidence            2221122 2466666543222   35677666665

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.97  E-value=0.0042  Score=51.94  Aligned_cols=109  Identities=10%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             CCCEEEEEEeCCCeEEEEECCC----CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558          141 DPRYMATIIMDSAKVVVLDIRF----PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD  216 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  216 (253)
                      ++++...+  ++. |.+.|.++    ... +...-.-......++++|||..+++++..+.++.|.|+.+.+........
T Consensus       287 dGK~~~V~--gn~-V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTIG--GSK-VPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEEC--CCE-EEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            56665552  344 99999987    232 33333345567899999999544456667999999999987643211111


Q ss_pred             Ce----eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          217 PI----LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       217 ~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +.    ....-+......+|.++|..+.+.-.|+.+..|++
T Consensus       363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence            11    11122445567889999887778888999999985

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.94  E-value=0.0071  Score=49.04  Aligned_cols=167  Identities=14%  Similarity=0.133  Sum_probs=85.5

Q ss_pred             eEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe-----eEEEeeCC
Q 035558           66 TCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL-----VRLGWNKQ  140 (253)
Q Consensus        66 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~  140 (253)
                      .|++|+.. |+.+..+.-..+.|.++.|.+...|+....||.++++|+....  ............|     ....+.. 
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~-  137 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK-  137 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC-
Confidence            58999886 5556665533489999999955667777899999999997443  1111111111122     2222222 


Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCCCCeeee---cc-----ccc-ceeE-EEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPTLPVVEL---QR-----HQA-SVNA-IAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~-----~~~-~i~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      +|  ++.-..++. +.+..--........+   ..     +.. .... ..++.+. ...+....++.+.+.+-...+. 
T Consensus       138 ~G--ivvLt~~~~-~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~-  212 (410)
T PF04841_consen  138 NG--IVVLTGNNR-FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ-  212 (410)
T ss_pred             CC--EEEECCCCe-EEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc-
Confidence            33  222233443 4333221111001111   10     000 0111 2234444 2444444555565444332210 


Q ss_pred             CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                                ....+++..++.||+++.++....++.+.+.
T Consensus       213 ----------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~  243 (410)
T PF04841_consen  213 ----------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVV  243 (410)
T ss_pred             ----------ccCCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence                      1234689999999999977767777777664

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.88  E-value=0.0052  Score=45.90  Aligned_cols=186  Identities=11%  Similarity=0.137  Sum_probs=98.0

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---   76 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---   76 (253)
                      |+++.++++..+  .|.-++.+.     +.++.+.-..-    +..-.|++. .++.++++--.++.+.++++....   
T Consensus        31 pd~~tLfaV~d~~~~i~els~~G-----~vlr~i~l~g~----~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   31 PDTGTLFAVQDEPGEIYELSLDG-----KVLRRIPLDGF----GDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEEETT-------EEEEEE-SS-----SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCCCeEEEEECCCCEEEEEcCCC-----CEEEEEeCCCC----CCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence            666777777775  776667653     44444432221    346688887 666666655568999999884321   


Q ss_pred             ---eeeeee-----cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC---CCCeeeeec-----cCCCCCCeeEEEeeC
Q 035558           77 ---VDTQLI-----AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD---KEHSTIIYE-----SSEPDTPLVRLGWNK  139 (253)
Q Consensus        77 ---~~~~~~-----~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~-----~~~~~~~i~~~~~~~  139 (253)
                         ....+.     .++..+-.++|. .++.|+.+-+.....++.++.   .........     .......+..++++|
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p  180 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP  180 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence               112221     244568899999 666666777777777887765   211111110     112233678899999


Q ss_pred             CCCCEEEEEEeCCCeEEEEECCCCCCCeee--ecc--c-----ccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          140 QDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQR--H-----QASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       140 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~--~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                      .++.+++.+..+.. |..+|.. ++ ++..  +..  |     -...-.|+|.++|  .|+..++-+..++|
T Consensus       181 ~t~~lliLS~es~~-l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  181 RTGHLLILSDESRL-LLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF  247 (248)
T ss_dssp             TTTEEEEEETTTTE-EEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred             CCCeEEEEECCCCe-EEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence            76777766555555 8888844 33 2332  222  1     1246789999998  45555666655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00320 WD40 WD40 repeats

Probab=97.87  E-value=5.5e-05  Score=38.03  Aligned_cols=38  Identities=34%  Similarity=0.662  Sum_probs=32.1

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD   71 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd   71 (253)
                      ++...+..|.     ..|.++.|+ +++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~-----~~i~~~~~~-~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHT-----GPVTSVAFS-PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecC-----CceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence            4456667777     789999999 6778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.86  E-value=6.3e-05  Score=37.80  Aligned_cols=37  Identities=27%  Similarity=0.434  Sum_probs=32.1

Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEE
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD  112 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d  112 (253)
                      +....+..|...|.++.|+ .+..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4456667788999999999 789999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.82  E-value=0.0074  Score=48.13  Aligned_cols=233  Identities=12%  Similarity=0.054  Sum_probs=100.4

Q ss_pred             CCceEEeec-C--cEEEEEccCCccccceeeeecC---CCCccccCCeeEEEecCCCCCEEEEEeC------CCeEEEEe
Q 035558            4 KPDLLATSS-D--FLRVWRISDEDRRVELKSLLNG---NKNSEYCGPLTSFDWNEAEPRRIGTSSI------DTTCTIWD   71 (253)
Q Consensus         4 ~~~~l~~~~-~--~v~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vwd   71 (253)
                      +.++|+..+ +  .|.|.|+.+....+++.++++.   +..... ..-..+-.- ++++.++++-.      -|-+.+.|
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~-s~PHT~Hcl-p~G~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGL-SRPHTVHCL-PDGRIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-E-EEEEEEEE--SS--EEEEEEEETTS-S--EEEEE-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCC-CCCceeeec-CCccEEEEeccCCCCCCCCcEEEEc
Confidence            345666655 4  9999999865455566666654   111111 111122222 67888887632      23577788


Q ss_pred             ccCceeeeeeecc---cccEEEEEec-CCCeEEEEe--------------------CCCcEEEEEcCCCCCeeeeeccCC
Q 035558           72 IEREAVDTQLIAH---DKEVYDIAWG-GVGVFASVS--------------------ADGSVRVFDLRDKEHSTIIYESSE  127 (253)
Q Consensus        72 ~~~~~~~~~~~~~---~~~v~~~~~~-~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~~  127 (253)
                      -++.+........   ...-.++-|. ..+.++|..                    ...++.+||+.+.+..+.+.....
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            8777666555432   1223455555 556666553                    246799999999886666554332


Q ss_pred             CCCCeeEEEee--CCCCCEEEEEE-eCCCeEEEEEC-CCCC---CCeeeecc-----------------cccceeEEEEe
Q 035558          128 PDTPLVRLGWN--KQDPRYMATII-MDSAKVVVLDI-RFPT---LPVVELQR-----------------HQASVNAIAWA  183 (253)
Q Consensus       128 ~~~~i~~~~~~--~~~~~~l~~~~-~~~~~i~~~d~-~~~~---~~~~~~~~-----------------~~~~i~~~~~~  183 (253)
                      + .....+.|.  | +..+=.+++ -..+ |..|-- ..+.   +.+..+..                 -..-|+.+..|
T Consensus       244 g-~~pLEvRflH~P-~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  244 G-QMPLEVRFLHDP-DANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             E-EEEEEEEE-SST-T--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             C-CceEEEEecCCC-CccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            1 134556654  4 334433333 3333 544433 3221   11222211                 13457899999


Q ss_pred             cCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCC-----------C-eeeccCCCceeEEEEcCCCCceEEE
Q 035558          184 PHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLD-----------P-ILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       184 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-----------~-~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      .|. ++|. ++-.+|.|+.||+.....|....+.           + ..-..-.+...-++.|.||+++...
T Consensus       321 lDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  321 LDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             cCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            998 6665 4557999999999998876511100           0 0000112344677888888876643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.82  E-value=0.01  Score=47.22  Aligned_cols=208  Identities=15%  Similarity=0.175  Sum_probs=108.9

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-c-------c-
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-A-------H-   84 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~-------~-   84 (253)
                      .+.++|+.++    +....... .     ..+....|+ |+++.++-.. ++.|.+++..+++..+.-. +       - 
T Consensus        24 ~y~i~d~~~~----~~~~l~~~-~-----~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~   91 (353)
T PF00930_consen   24 DYYIYDIETG----EITPLTPP-P-----PKLQDAKWS-PDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVP   91 (353)
T ss_dssp             EEEEEETTTT----EEEESS-E-E-----TTBSEEEE--SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB-
T ss_pred             eEEEEecCCC----ceEECcCC-c-----cccccceee-cCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCcc
Confidence            7888999884    33322222 3     578899999 8899988875 6789999987765332111 1       0 


Q ss_pred             --------cccEEEEEec-CCCeEEEEeCC-Cc-----------------------------------EEEEEcCCCCCe
Q 035558           85 --------DKEVYDIAWG-GVGVFASVSAD-GS-----------------------------------VRVFDLRDKEHS  119 (253)
Q Consensus        85 --------~~~v~~~~~~-~~~~l~~~~~d-g~-----------------------------------i~i~d~~~~~~~  119 (253)
                              -+.-..+-|+ ++++|+....| ..                                   +.++|+.+++..
T Consensus        92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~  171 (353)
T PF00930_consen   92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT  171 (353)
T ss_dssp             -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC
T ss_pred             ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE
Confidence                    0122456788 77777665432 11                                   223344333321


Q ss_pred             eeeec--cCCCCCCeeEEEeeCCCCC-EEEEE-EeCCC--eEEEEECCCCCCCeeeecccccc---eeEEEEe-cCCCCe
Q 035558          120 TIIYE--SSEPDTPLVRLGWNKQDPR-YMATI-IMDSA--KVVVLDIRFPTLPVVELQRHQAS---VNAIAWA-PHSSCH  189 (253)
Q Consensus       120 ~~~~~--~~~~~~~i~~~~~~~~~~~-~l~~~-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~---i~~~~~~-~~~~~~  189 (253)
                      .....  ......-+..+.|.+ ++. +++.- ..+..  .+.++|..++...+.........   -....|. +++..+
T Consensus       172 ~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~  250 (353)
T PF00930_consen  172 ELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEF  250 (353)
T ss_dssp             EE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEE
T ss_pred             EeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEE
Confidence            11111  012233677888988 666 33332 23332  35667776644322221112222   2345554 776567


Q ss_pred             EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE-EEEcCCCCceE
Q 035558          190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ-LQWSSSQPDWV  240 (253)
Q Consensus       190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~  240 (253)
                      |.....||.-+||-+.......      ..+....-.|.. +.|+++++.+.
T Consensus       251 l~~s~~~G~~hly~~~~~~~~~------~~lT~G~~~V~~i~~~d~~~~~iy  296 (353)
T PF00930_consen  251 LWISERDGYRHLYLYDLDGGKP------RQLTSGDWEVTSILGWDEDNNRIY  296 (353)
T ss_dssp             EEEEETTSSEEEEEEETTSSEE------EESS-SSS-EEEEEEEECTSSEEE
T ss_pred             EEEEEcCCCcEEEEEcccccce------eccccCceeecccceEcCCCCEEE
Confidence            7777788877777666544321      233444455644 66777766554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.81  E-value=0.0067  Score=44.78  Aligned_cols=63  Identities=11%  Similarity=-0.007  Sum_probs=50.0

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEE-ec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA-WG-GVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      +++++.|...|.+++.+.++++....+... +.|.+-+ .. ++.++..++.|+..+..|.++...
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence            678999999999999999999877777632 3333222 23 889999999999999999988753

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=4.6e-05  Score=54.57  Aligned_cols=141  Identities=15%  Similarity=0.045  Sum_probs=78.4

Q ss_pred             eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccce
Q 035558           98 VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASV  177 (253)
Q Consensus        98 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i  177 (253)
                      .+..-+.||.|+-++++..+....  ...    .+.+..-.+..+.-+++|+.++. |.+|..............-...|
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~r--se~----~~~e~~~v~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~~e~i  104 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCR--SER----FIDEGQRVVTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSGEESI  104 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhh--hhh----hhhcceeecccCceEEeecccce-EEEecCCccchHHHhhhcccccc
Confidence            444557789998888876542111  000    11111112225667888999998 99998763322111111122233


Q ss_pred             eEEE-EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC-CceeEEEEcCCCCceEEE--EcCCcEEEEEC
Q 035558          178 NAIA-WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG-AEIEQLQWSSSQPDWVAI--AFSTKLQILRV  253 (253)
Q Consensus       178 ~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~--~~~~~i~vw~l  253 (253)
                      .++- -..++ .+..+++.||.|+.|++...+...       ....|. .++..+..+..++.+..+  +.+..++.|+|
T Consensus       105 ~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~~g-------~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  105 DLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKVLG-------YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             eecccccccc-ceeEEeccCCceeeeccccCceee-------eeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            3322 22233 488899999999999998876543       344454 445444444444444444  56666666654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.0093  Score=44.87  Aligned_cols=201  Identities=9%  Similarity=0.090  Sum_probs=116.9

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec-ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA-HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      ..+.++.|+ |+.+.|++......-.|+=-..|+.+.++.- --...-.++|. ++.+.++--.++.+.++.+.......
T Consensus        86 ~nvS~LTyn-p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          86 ANVSSLTYN-PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccccceeeC-CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            568999999 6777777777777777776667888777651 12234567888 77777777778888888877653211


Q ss_pred             e-------eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC--CCeeeeccc-------ccceeEEEEec
Q 035558          121 I-------IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT--LPVVELQRH-------QASVNAIAWAP  184 (253)
Q Consensus       121 ~-------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~-------~~~i~~~~~~~  184 (253)
                      .       +......+...-.++|.|.+..++++--.+-  +.+|......  ..+.....+       -..|.++.|++
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            1       1112222557788999995555555544444  5555443222  111111111       23577889998


Q ss_pred             CCCCeEEEecCCCcEEEEeccCCCCCCCC-CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCc
Q 035558          185 HSSCHICTAGDDSQALIWDLSSMGQPVEG-GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTK  247 (253)
Q Consensus       185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  247 (253)
                      ..+.+|+-+.+++.+.-.|....-..... ......+...-...-.|+..++|. +..++.-+.
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnl  305 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNL  305 (316)
T ss_pred             CCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCc
Confidence            76668888888888888877654211100 000000011122345678888876 444554443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.75  E-value=0.0036  Score=40.01  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=66.7

Q ss_pred             eeEEEeeCC---CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          132 LVRLGWNKQ---DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       132 i~~~~~~~~---~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      |++|++...   ..+.|++|+.|.. |++|+-..   .+.++.. ...|++++-...+  .++.+..+|+|-+|+-....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGDE---IVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEeCCc---EEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCccee
Confidence            455555432   3368999999988 99998653   3555554 4567777766664  79999999999999764432


Q ss_pred             CCCCCCCCCeeeccCCCceeEEEEcCCC----CceEEEEcCCcEE
Q 035558          209 QPVEGGLDPILAYTAGAEIEQLQWSSSQ----PDWVAIAFSTKLQ  249 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~i~  249 (253)
                                ........+.++++..-.    +.++++-.+|.+-
T Consensus        75 ----------WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 ----------WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ----------eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                      233344456676655433    2477887787764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.00073  Score=58.77  Aligned_cols=96  Identities=17%  Similarity=0.275  Sum_probs=68.0

Q ss_pred             eEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc
Q 035558            7 LLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH   84 (253)
Q Consensus         7 ~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~   84 (253)
                      .++.|++  .+-..|...+      +..  .|.+....++|++++|+ .++.+++.|-.+|.|.+||...++..+.+..|
T Consensus       101 ~ivi~Ts~ghvl~~d~~~n------L~~--~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGN------LGP--LHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcc------cch--hhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            3444443  6666665542      111  23333344899999999 99999999999999999999999988888777


Q ss_pred             cccEEEEEec----CCCeEEEEeCCCcEEEEEc
Q 035558           85 DKEVYDIAWG----GVGVFASVSADGSVRVFDL  113 (253)
Q Consensus        85 ~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~  113 (253)
                      ..+.+.+-+.    ++..++++...|.  +|.+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            6666655544    5557888887886  5544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.62  E-value=0.0045  Score=50.23  Aligned_cols=164  Identities=16%  Similarity=0.176  Sum_probs=93.2

Q ss_pred             eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe---CC-CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558           66 TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS---AD-GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        66 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      .+.+-|.. +.....+......+..-+|+ ++..++...   .. ..+.++|+.+++.......    .+.-..-+|+| 
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~----~g~~~~P~fsp-  247 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF----NGNNGAPAFSP-  247 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc----CCccCCccCCC-
Confidence            34444443 43344444344556666777 666544332   22 3589999998876555432    22334568999 


Q ss_pred             CCCEEEEEE-eCCC-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558          141 DPRYMATII-MDSA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI  218 (253)
Q Consensus       141 ~~~~l~~~~-~~~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  218 (253)
                      +++.++.+. .++. .|.++|+....  +..+....+.-..-.|+|+|..+.++.+..|.-.||-........      .
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~------~  319 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV------T  319 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce------e
Confidence            666666554 4443 37777887755  333443333334678999996555677777877777555433211      1


Q ss_pred             eeccCCCceeEEEEcCCCCceEEEE
Q 035558          219 LAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       219 ~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ........-..-.|+|+|+.++..+
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEe
Confidence            2222222222678999999777554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.024  Score=45.58  Aligned_cols=191  Identities=15%  Similarity=0.094  Sum_probs=117.0

Q ss_pred             eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC---CCcEEEEEcCCCCCeee
Q 035558           46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~~~~~  121 (253)
                      ..++.++...+.++....++.|.+.|..+.+......--. ....+++. ++..+..+..   ++++.+.|-.+.+....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            3566773333455565567899999987777666655222 56778888 7766655544   68888888888775444


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-----ecccccceeEEEEecCCCCeEEEecCC
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-----LQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      ....   ..+ ..++++| +++.+++...+.+.|.+.|.....  +..     ...-......+.++|++.+..++...+
T Consensus       156 ~~vG---~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~--v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         156 IPVG---NTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNS--VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             EecC---CCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcc--eeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            2221   123 7899999 888777776555559999976543  221     111223446789999995333333333


Q ss_pred             --CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCCcEEE
Q 035558          197 --SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFSTKLQI  250 (253)
Q Consensus       197 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~v  250 (253)
                        +.+...|..+.....     .....+.. ....+..+|++..+... ...+.+.+
T Consensus       229 ~~~~v~~id~~~~~v~~-----~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         229 GSNNVLKIDTATGNVTA-----TDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             CCceEEEEeCCCceEEE-----eccccccC-CCCceeECCCCCEEEEEecCCCeEEE
Confidence              688888888765322     00111122 45677888888766544 22344444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.59  E-value=0.01  Score=48.41  Aligned_cols=139  Identities=12%  Similarity=0.114  Sum_probs=70.8

Q ss_pred             ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE-ECC
Q 035558           84 HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL-DIR  161 (253)
Q Consensus        84 ~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~-d~~  161 (253)
                      ....+..+.++ +++.++. +.||.-.++......   ...     .+....++|.+ .+ .+|+-..... |.++ ++.
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r---~k~-----~G~g~~~vw~~-~n-~yAv~~~~~~-I~I~kn~~   98 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR---NKA-----FGSGLSFVWSS-RN-RYAVLESSST-IKIYKNFK   98 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE---EEE-----EEE-SEEEE-T-SS-EEEEE-TTS--EEEEETTE
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc---ccc-----cCceeEEEEec-Cc-cEEEEECCCe-EEEEEcCc
Confidence            44567889999 8888877 557777777633222   111     12456788987 44 4666665666 9986 333


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      ...  ...+.. ...+..+..   | .+|+..+.+ .|.+||..+++..         ..-.-.+|..+.|++++. +++
T Consensus        99 ~~~--~k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i---------~~i~v~~vk~V~Ws~~g~-~va  160 (443)
T PF04053_consen   99 NEV--VKSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLI---------RRIDVSAVKYVIWSDDGE-LVA  160 (443)
T ss_dssp             E-T--T------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EE---------EEESS-E-EEEEE-TTSS-EEE
T ss_pred             ccc--ceEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHccee---------eEEecCCCcEEEEECCCC-EEE
Confidence            221  223322 123444433   6 577666644 8999999987632         122233589999999997 555


Q ss_pred             EEcCCcEEEEE
Q 035558          242 IAFSTKLQILR  252 (253)
Q Consensus       242 ~~~~~~i~vw~  252 (253)
                      ...+..+.|++
T Consensus       161 l~t~~~i~il~  171 (443)
T PF04053_consen  161 LVTKDSIYILK  171 (443)
T ss_dssp             EE-S-SEEEEE
T ss_pred             EEeCCeEEEEE
Confidence            55566777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.59  E-value=0.0003  Score=59.71  Aligned_cols=110  Identities=12%  Similarity=0.217  Sum_probs=79.9

Q ss_pred             eeEEEeeCCCCCEEEEEEe---CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          132 LVRLGWNKQDPRYMATIIM---DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       132 i~~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      -+-..|+| ...++++++.   .+++|.||--. ++ |..... ..-.+++++|+|.. ..|+.|-.-|.+.+|.....+
T Consensus        18 sti~SWHP-sePlfAVA~fS~er~GSVtIfadt-GE-Pqr~Vt-~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   18 STISSWHP-SEPLFAVASFSPERGGSVTIFADT-GE-PQRDVT-YPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             ccccccCC-CCceeEEEEecCCCCceEEEEecC-CC-CCcccc-cceehhhhccChHH-HHHhhccccceeEEEecCCce
Confidence            34467999 7777877764   23348777432 22 222111 22346779999987 588888899999999887755


Q ss_pred             CCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          209 QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .-       .....|..+|..+.||++|..++++..-+.+.+|+.
T Consensus        93 ~h-------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   93 TH-------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             ee-------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            33       256679999999999999999999999999999974

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.58  E-value=0.016  Score=42.82  Aligned_cols=144  Identities=11%  Similarity=-0.077  Sum_probs=93.1

Q ss_pred             CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558           53 AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL  132 (253)
Q Consensus        53 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i  132 (253)
                      ....+++.|+..+.+.-.|.++++.+..-. -...|.+-+.--+++++.|+..|.+++.+.+++...........   .-
T Consensus        21 dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~---vk   96 (354)
T KOG4649|consen   21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET---VK   96 (354)
T ss_pred             CCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh---hc
Confidence            456788999999999999999998765432 23344433333477899999999999999999963322222111   11


Q ss_pred             eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558          133 VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                      ......+ ++.++..++.|+. .+..|.++.. ++...+...+...+-+..|-. ..|+.+...|.+.--..
T Consensus        97 ~~a~~d~-~~glIycgshd~~-~yalD~~~~~-cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~  164 (354)
T KOG4649|consen   97 VRAQCDF-DGGLIYCGSHDGN-FYALDPKTYG-CVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTK  164 (354)
T ss_pred             cceEEcC-CCceEEEecCCCc-EEEecccccc-eEEecccCCceeccceecCCC-ceEEEEeccceEEEEcc
Confidence            1233445 8899999999999 9999998855 466655444444445555622 24555555555544333

>PHA02713 hypothetical protein; Provisional

Probab=97.49  E-value=0.01  Score=50.14  Aligned_cols=148  Identities=3%  Similarity=-0.055  Sum_probs=79.6

Q ss_pred             CCCEEEEEeCCC-----eEEEEeccCce--eeeeeecccccEEEEEecCCCeEEEEeCCC--------------------
Q 035558           54 EPRRIGTSSIDT-----TCTIWDIEREA--VDTQLIAHDKEVYDIAWGGVGVFASVSADG--------------------  106 (253)
Q Consensus        54 ~~~~l~~~~~dg-----~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg--------------------  106 (253)
                      ++.+.+.|+.++     .+..||..+.+  .+..+....... +++..++.+.+.|+.++                    
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence            577778887654     47889987664  222222111111 11212677888887653                    


Q ss_pred             ---cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-----CeEEEEECCC-CC-CCeeeecccccc
Q 035558          107 ---SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-----AKVVVLDIRF-PT-LPVVELQRHQAS  176 (253)
Q Consensus       107 ---~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~-~~-~~~~~~~~~~~~  176 (253)
                         .+..||.++.+-. .+.......... +++..  ++.+.+.|+.++     ..+..||..+ .+ ..+..+......
T Consensus       430 ~~~~ve~YDP~td~W~-~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        430 SSNKVIRYDTVNNIWE-TLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             ccceEEEECCCCCeEe-ecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence               4777888776421 111111111111 22222  567777777542     2267899886 33 223334333333


Q ss_pred             eeEEEEecCCCCeEEEecCCC--cEEEEeccCCCC
Q 035558          177 VNAIAWAPHSSCHICTAGDDS--QALIWDLSSMGQ  209 (253)
Q Consensus       177 i~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~  209 (253)
                      ...+.+  ++ ++.++|+.|+  .+..||..+.+-
T Consensus       506 ~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        506 LHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             ceeEEE--CC-EEEEEeeecceeehhhcCcccccc
Confidence            333333  34 6888999888  777888877664

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.031  Score=43.31  Aligned_cols=196  Identities=13%  Similarity=0.104  Sum_probs=101.9

Q ss_pred             EecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc--
Q 035558           49 DWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES--  125 (253)
Q Consensus        49 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--  125 (253)
                      .|.|..+.++.+--..+.|.-|+..+++.. .+. +.+.+.++... .+..|+++..  -+.+++.+++.....+...  
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            355333445666667788999988766422 222 23344555544 5555555532  3667777555432222221  


Q ss_pred             CCCCCCeeEEEeeCCCCCEEEEEEe-----C-----CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558          126 SEPDTPLVRLGWNKQDPRYMATIIM-----D-----SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~l~~~~~-----~-----~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      .......+.+...| ++.+.+....     .     .+.++.+|. ... .+..+..+-..-++|+|+|++..++++=+.
T Consensus       107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence            12223566778888 6666554433     1     112444443 222 244445445667899999999544455556


Q ss_pred             CCcEEEEeccCCCCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEEEcC-CcEEEEE
Q 035558          196 DSQALIWDLSSMGQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAIAFS-TKLQILR  252 (253)
Q Consensus       196 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~-~~i~vw~  252 (253)
                      .+.|.-|++......... ....... ...+..-.++...+|..++++..+ +.|.+|+
T Consensus       184 ~~~i~r~~~d~~~g~~~~-~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         184 ANRIHRYDLDPATGPIGG-RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             CCeEEEEecCcccCccCC-cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence            688888888742211100 1111122 234455566666677655433332 2555543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.44  E-value=0.034  Score=47.28  Aligned_cols=172  Identities=12%  Similarity=0.099  Sum_probs=90.9

Q ss_pred             CCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe------CCC--cEEEEEcCCCCCeeeeeccCCCCCCeeE
Q 035558           64 DTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS------ADG--SVRVFDLRDKEHSTIIYESSEPDTPLVR  134 (253)
Q Consensus        64 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~  134 (253)
                      +|.+.-.+-.....+.-..+....+.+.+.+ +++.++..-      .|.  .|.+++.  +.....+..  + . ....
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~--g-~-~~t~  401 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLE--G-H-SLTR  401 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeec--C-C-CCCC
Confidence            6666554432222222222333467788888 888777665      244  4444454  222233322  1 1 3677


Q ss_pred             EEeeCCCCCEEEEEEeCCC-----------eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE--
Q 035558          135 LGWNKQDPRYMATIIMDSA-----------KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI--  201 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~~~~~-----------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i--  201 (253)
                      -.|+| ++..+++......           .+.+.++..+.. ..   .....|..+.|+|||. .++... +|.|.+  
T Consensus       402 PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~  474 (591)
T PRK13616        402 PSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGV-RAAMII-GGKVYLAV  474 (591)
T ss_pred             ceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEE
Confidence            88999 7776666543222           133334433221 11   2345799999999995 555443 477777  


Q ss_pred             -EeccCCCCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          202 -WDLSSMGQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       202 -wd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                       -....+....   ..+..+. .-...+.++.|.+++. |+.+..+....+|.
T Consensus       475 Vvr~~~G~~~l---~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~  523 (591)
T PRK13616        475 VEQTEDGQYAL---TNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWY  523 (591)
T ss_pred             EEeCCCCceee---cccEEeecccCCccccceEecCCE-EEEEecCCCCceEE
Confidence             3323332111   2222232 2344568899999987 55555555555554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.043  Score=44.16  Aligned_cols=191  Identities=12%  Similarity=0.073  Sum_probs=118.5

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---CCeEEEEeccCcee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---DTTCTIWDIEREAV   77 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~   77 (253)
                      ......+...+  .|.+.|....    +.......-.      ....++++ +++..+..+..   ++++.+.|..+.+.
T Consensus        84 ~~~~vyv~~~~~~~v~vid~~~~----~~~~~~~vG~------~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          84 AGNKVYVTTGDSNTVSVIDTATN----TVLGSIPVGL------GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             CCCeEEEecCCCCeEEEEcCccc----ceeeEeeecc------CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            34445555533  8888886664    3333332221      34578888 66655555544   68999999998888


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEE-eCCCcEEEEEcCCCCCee-eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASV-SADGSVRVFDLRDKEHST-IIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--  152 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--  152 (253)
                      ......-..+ ..+++. ++..++.. ..++.|.+.|........ ..............+.++| ++..+.+.....  
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~  230 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCC
Confidence            8775543344 888999 88855554 478999999977665321 0000111222456788999 777666655544  


Q ss_pred             CeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeEEEe-cCCCcEEEEeccCCC
Q 035558          153 AKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHICTA-GDDSQALIWDLSSMG  208 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~  208 (253)
                      ..+...|..+... ... ..........+..+|++ ..+.+. +..+.+.+-|..+..
T Consensus       231 ~~v~~id~~~~~v-~~~~~~~~~~~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         231 NNVLKIDTATGNV-TATDLPVGSGAPRGVAVDPAG-KAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             ceEEEEeCCCceE-EEeccccccCCCCceeECCCC-CEEEEEecCCCeEEEEeCCCCc
Confidence            2388888887552 221 11111145678999999 466655 455888888887755

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.41  E-value=0.044  Score=43.67  Aligned_cols=150  Identities=13%  Similarity=0.102  Sum_probs=74.3

Q ss_pred             cccEEEEEec-CCCeEEEE--eCC---CcEEEEEcCCCCCeeeeeccC-CCCCCeeEEEee-CCCCCEEEEEEeCCC-eE
Q 035558           85 DKEVYDIAWG-GVGVFASV--SAD---GSVRVFDLRDKEHSTIIYESS-EPDTPLVRLGWN-KQDPRYMATIIMDSA-KV  155 (253)
Q Consensus        85 ~~~v~~~~~~-~~~~l~~~--~~d---g~i~i~d~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~l~~~~~~~~-~i  155 (253)
                      ...+..+.|. ++..|+..  ..+   ..+.++|..++.......... ..-..-....|. +.+..++.....+|- .|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            3456778888 66633332  222   236677877765433332211 111122345554 634455555555554 24


Q ss_pred             EEEECCCCCCCeeeecccccceeE-EEEecCCCCeEEEecCC--CcEEEEeccCC-CCCCCCCCCCeeeccCCCceeEEE
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNA-IAWAPHSSCHICTAGDD--SQALIWDLSSM-GQPVEGGLDPILAYTAGAEIEQLQ  231 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~d--g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~  231 (253)
                      .+++.....  ...+....-.|.. +.+++++..+.+++..+  +.-.+|.+.-. ....      ..+......-..+.
T Consensus       263 y~~~~~~~~--~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~------~~LT~~~~~~~~~~  334 (353)
T PF00930_consen  263 YLYDLDGGK--PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP------KCLTCEDGDHYSAS  334 (353)
T ss_dssp             EEEETTSSE--EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE------EESSTTSSTTEEEE
T ss_pred             EEEcccccc--eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe------EeccCCCCCceEEE
Confidence            444554432  4455544555644 77888875555677653  34445544433 1111      12222222226999


Q ss_pred             EcCCCCceEEE
Q 035558          232 WSSSQPDWVAI  242 (253)
Q Consensus       232 ~~~~~~~~~~~  242 (253)
                      |||++++++-.
T Consensus       335 ~Spdg~y~v~~  345 (353)
T PF00930_consen  335 FSPDGKYYVDT  345 (353)
T ss_dssp             E-TTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999987743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.40  E-value=0.056  Score=44.78  Aligned_cols=180  Identities=12%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             CCeeEEEecCCCCCEEEEEe---CCCeEEEEeccCceeeeeeecccccEEEEEec-----CCCeEEEEeCCCcEEEEEcC
Q 035558           43 GPLTSFDWNEAEPRRIGTSS---IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-----GVGVFASVSADGSVRVFDLR  114 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~~l~~~~~dg~i~i~d~~  114 (253)
                      -++..++|-  ||+.++-..   .+|.+++=|   .+.+.    .-.-|..+.|.     +...+++......|.+|.+.
T Consensus        20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec--CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            368899995  676665432   233333211   12232    33468889998     23356666778889999886


Q ss_pred             CC--CCeeeee----ccC-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCC
Q 035558          115 DK--EHSTIIY----ESS-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS  187 (253)
Q Consensus       115 ~~--~~~~~~~----~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  187 (253)
                      -.  +..+.+.    +.. ...---..+.|+| ....|++-...+. -.+++.+.....++.--...+.|.|.+|.+||.
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV-SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ  168 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce-eEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence            22  1111111    100 0000123478999 7777777666654 456666655544444334578899999999997


Q ss_pred             CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          188 CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       188 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      +++++.+..=.-++||-.......   ......+.-++.|.++.-.-+.
T Consensus       169 RLVVAvGSsLHSyiWd~~qKtL~~---CsfcPVFdv~~~Icsi~AT~ds  214 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSAQKTLHR---CSFCPVFDVGGYICSIEATVDS  214 (671)
T ss_pred             EEEEEeCCeEEEEEecCchhhhhh---CCcceeecCCCceEEEEEeccc
Confidence            666666666677888865432110   1112333445566666554443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0057  Score=49.58  Aligned_cols=134  Identities=10%  Similarity=0.042  Sum_probs=84.4

Q ss_pred             eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC------CCEEEEEEeCCCeEEEEECCCCCC-Ceeee
Q 035558           98 VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD------PRYMATIIMDSAKVVVLDIRFPTL-PVVEL  170 (253)
Q Consensus        98 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~  170 (253)
                      +|.++.....++-.|++.++.+..-..   +. .|.-+.+.|..      ...-++|-.+.+ |.-||.|-... .+...
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~---~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~-vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKF---ED-DINMVDITPDFKFAQLTSEQTLVGLSDNS-VFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeec---cC-CcceeeccCCcchhcccccccEEeecCCc-eEEecccccCcceeeee
Confidence            344556666788889988874332221   11 25555665521      112234445666 99999986543 22222


Q ss_pred             cccc----cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558          171 QRHQ----ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       171 ~~~~----~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                      +.|.    ....|.+-..+|  ++++||.+|.||+||. .+....      ..+.+-+.+|..|..+.+|+.+++.+..
T Consensus       423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK------TAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK------TALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             eccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhh------hcccccCCceeeEEeeccCcEEEEeccc
Confidence            3322    235566666666  8999999999999998 333222      3667789999999999999976665543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.0057  Score=49.57  Aligned_cols=146  Identities=12%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             CCCEE-EEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-C-------CCeEEEEeCCCcEEEEEcCCCCCeeeee-
Q 035558           54 EPRRI-GTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-G-------VGVFASVSADGSVRVFDLRDKEHSTIIY-  123 (253)
Q Consensus        54 ~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  123 (253)
                      +.++| .++.....|+-.|++.|+.+..++-+.. |.-+.+. +       ...-+.|-.|..|.-||.|-........ 
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            34444 4555556788889999999999987766 5444444 1       1223456678889999998554311111 


Q ss_pred             cc-C-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558          124 ES-S-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI  201 (253)
Q Consensus       124 ~~-~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  201 (253)
                      .. . .......|++-.  ...+|++|+.+|. |++||- .+......+++-..+|..+..+.+|. +++..+ +..+.+
T Consensus       423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~Gd-IRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK-wil~Tc-~tyLlL  496 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGD-IRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK-WILATC-KTYLLL  496 (644)
T ss_pred             eccccccccccceeeec--CCceEEEeecCCc-EEeehh-hhhhhhhcccccCCceeeEEeeccCc-EEEEec-ccEEEE
Confidence            11 1 111133444433  5678999999999 999997 44444566778888999999999994 544433 567777


Q ss_pred             EeccC
Q 035558          202 WDLSS  206 (253)
Q Consensus       202 wd~~~  206 (253)
                      -++.-
T Consensus       497 i~t~~  501 (644)
T KOG2395|consen  497 IDTLI  501 (644)
T ss_pred             EEEec
Confidence            76653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.0013  Score=57.27  Aligned_cols=99  Identities=16%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             CCCEEEEEeCCCeEEEEeccCc-eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCC
Q 035558           54 EPRRIGTSSIDTTCTIWDIERE-AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTP  131 (253)
Q Consensus        54 ~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  131 (253)
                      -+..++.|+..|.+...|.... .....=..-.++|++++|+ ++..++.|-.+|.|.+||+..++..+.+.....+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3567888998999988887643 1111111235799999999 9999999999999999999998877777766665556


Q ss_pred             eeEEEeeCCCCCEEEEEEeCCC
Q 035558          132 LVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus       132 i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      +..+.+.. ++..++++...|.
T Consensus       178 vi~v~~t~-~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTS-QNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeC-CCcEEEEccCCCc
Confidence            66666665 4455666655553

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.05  Score=41.16  Aligned_cols=156  Identities=14%  Similarity=0.143  Sum_probs=102.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee---eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT---QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                      .-+..+.++   +++...+..+.-++|.|+.+.....   .+.. .+--.++.. .|++...+..|.-+.+.|+.+...+
T Consensus        87 ~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          87 DLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCc
Confidence            345667766   6677777777889999998765332   2221 122233333 6888888886777889999998876


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc-ceeEEEEecCCCCeEEEecCCCc
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA-SVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      ...-......+....++.   .|++-.++..+++ +.+.|+.....|+..-.-..+ .+.++..+++. -+++...  --
T Consensus       162 ~lagrya~~~~d~~~v~I---SGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~vvy~--eg  234 (370)
T COG5276         162 QLAGRYALPGGDTHDVAI---SGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYLVVYD--EG  234 (370)
T ss_pred             eeeeeeccCCCCceeEEE---ecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEEEEcc--cc
Confidence            665555444444456666   5678888889999 999999998876544333333 68888888775 2444433  34


Q ss_pred             EEEEeccCCCCC
Q 035558          199 ALIWDLSSMGQP  210 (253)
Q Consensus       199 i~iwd~~~~~~~  210 (253)
                      +.+-|....+.+
T Consensus       235 vlivd~s~~ssp  246 (370)
T COG5276         235 VLIVDVSGPSSP  246 (370)
T ss_pred             eEEEecCCCCCc
Confidence            566666665533

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.22  E-value=0.096  Score=43.74  Aligned_cols=197  Identities=13%  Similarity=0.086  Sum_probs=103.4

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCC-ccccCCee--EEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKN-SEYCGPLT--SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ++.+++...+ .|.-.|..++    +.+..++.... ......+.  .+...  ++..++.++.+|.|+.+|.++++.+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG----~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATG----KVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCC----hhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEee
Confidence            3445555555 8888898887    44444433221 00000111  11221  22678888899999999999999887


Q ss_pred             eeeccccc-----EE-EEEecCCCeEEEEe---------CCCcEEEEEcCCCCCeeeeeccCCCC---------------
Q 035558           80 QLIAHDKE-----VY-DIAWGGVGVFASVS---------ADGSVRVFDLRDKEHSTIIYESSEPD---------------  129 (253)
Q Consensus        80 ~~~~~~~~-----v~-~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~---------------  129 (253)
                      ........     +. ...+ .+..++.++         .+|.+..+|..+++..-.........               
T Consensus       135 ~~~~~~~~~~~~~i~ssP~v-~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~  213 (488)
T cd00216         135 KFGNNDQVPPGYTMTGAPTI-VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP  213 (488)
T ss_pred             eecCCCCcCcceEecCCCEE-ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence            66532210     11 1111 234455553         36789999998887432221110000               


Q ss_pred             --CCe-eEEEeeCCCCCEEEEEEeCC-----------------CeEEEEECCCCCCCeeeec--cccc----ceeEEEEe
Q 035558          130 --TPL-VRLGWNKQDPRYMATIIMDS-----------------AKVVVLDIRFPTLPVVELQ--RHQA----SVNAIAWA  183 (253)
Q Consensus       130 --~~i-~~~~~~~~~~~~l~~~~~~~-----------------~~i~~~d~~~~~~~~~~~~--~~~~----~i~~~~~~  183 (253)
                        ..+ ...++.+ .+..+++++.++                 ..+.-+|..+++. +-.++  .|..    ......+.
T Consensus       214 ~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~~~~~~~~~s~p~~~  291 (488)
T cd00216         214 GGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPHDLWDYDGPNQPSLA  291 (488)
T ss_pred             CCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCCCCcccccCCCCeEE
Confidence              001 1234444 455666666544                 1388888888764 33332  1110    00011111


Q ss_pred             ----cCCC--CeEEEecCCCcEEEEeccCCCC
Q 035558          184 ----PHSS--CHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       184 ----~~~~--~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                          -++.  ..++.++.+|.+...|.++++.
T Consensus       292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             eccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence                1221  2577888899999999988763

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.21  E-value=0.066  Score=41.66  Aligned_cols=152  Identities=13%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             CCCEEEEEeCCCeEEEEecc-Cceeeeee----ecccccEE-EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC
Q 035558           54 EPRRIGTSSIDTTCTIWDIE-REAVDTQL----IAHDKEVY-DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS  126 (253)
Q Consensus        54 ~~~~l~~~~~dg~i~vwd~~-~~~~~~~~----~~~~~~v~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  126 (253)
                      ..+.+.+-+.||.+.-..+. .|+..+..    ..-..++. .-++. .+..++--+.+|.|+-.|+...... ......
T Consensus       146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~~~~~~  224 (342)
T PF06433_consen  146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-FGKPWS  224 (342)
T ss_dssp             ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-EEEEEE
T ss_pred             CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-ccCccc
Confidence            34567778889999888886 44433221    11122232 33444 5556666889999999999876521 111100


Q ss_pred             ---------C-CCCCeeEEEeeCCCCCEEEEEEeC---------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCC
Q 035558          127 ---------E-PDTPLVRLGWNKQDPRYMATIIMD---------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS  187 (253)
Q Consensus       127 ---------~-~~~~i~~~~~~~~~~~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  187 (253)
                               + ..+.-.-+++++ ..+.|.+.-..         +..|.++|+.+.+. +.++.. ..++.+|+.+.+..
T Consensus       225 ~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~  301 (342)
T PF06433_consen  225 LLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDK  301 (342)
T ss_dssp             SS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS
T ss_pred             ccCccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeC-CCccceEEEccCCC
Confidence                     0 012344578887 34343332211         12588889988664 666653 34688999998774


Q ss_pred             CeEEEe-cCCCcEEEEeccCCCC
Q 035558          188 CHICTA-GDDSQALIWDLSSMGQ  209 (253)
Q Consensus       188 ~~l~~~-~~dg~i~iwd~~~~~~  209 (253)
                      -+|++. ..++.+.+||..+++.
T Consensus       302 P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  302 PLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             -EEEEEETTTTEEEEEETTT--E
T ss_pred             cEEEEEcCCCCeEEEEeCcCCcE
Confidence            466554 5689999999999864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.16  E-value=0.15  Score=44.84  Aligned_cols=228  Identities=10%  Similarity=0.064  Sum_probs=134.0

Q ss_pred             CCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-----------C---Ce
Q 035558            2 CQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-----------D---TT   66 (253)
Q Consensus         2 p~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------d---g~   66 (253)
                      +.-++-|+.+.+ .+++..++.- +. -..+++.-+      .....+++. +....+++.+.           .   ..
T Consensus       681 ~a~~d~l~~~~~~~l~i~tid~i-qk-l~irtvpl~------~~prrI~~q-~~sl~~~v~s~r~e~~~~~~~ee~~~s~  751 (1096)
T KOG1897|consen  681 DAYPDSLASANGGALTIGTIDEI-QK-LHIRTVPLG------ESPRRICYQ-ESSLTFGVLSNRIESSAEYYGEEYEVSF  751 (1096)
T ss_pred             ccCCceEEEecCCceEEEEecch-hh-cceeeecCC------CChhheEec-ccceEEEEEecccccchhhcCCcceEEE
Confidence            445666777776 8888887663 11 223344444      345667776 32333332221           1   13


Q ss_pred             EEEEeccCceeeeeeec-cc---ccEEEEEec-C-CCeEEEEe----------CCCcEEEEEcCCCCCeeeeeccCCCCC
Q 035558           67 CTIWDIEREAVDTQLIA-HD---KEVYDIAWG-G-VGVFASVS----------ADGSVRVFDLRDKEHSTIIYESSEPDT  130 (253)
Q Consensus        67 i~vwd~~~~~~~~~~~~-~~---~~v~~~~~~-~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~  130 (253)
                      ++++|-++.+.+...+- ..   ..|.+..|. + +.+++.|.          ..|.|.++.+...+..+.+.+.. -.+
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~G  830 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKG  830 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-ecc
Confidence            66677666554433221 11   234455577 5 56666664          25788888887744444443322 233


Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      .+.++.--  +++++|.-  ... |++|++.+.++ ++.-..+..++..+...-.++ .++.|..-+++.+-..+..+..
T Consensus       831 av~aL~~f--ngkllA~I--n~~-vrLye~t~~~e-Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~  903 (1096)
T KOG1897|consen  831 AVYALVEF--NGKLLAGI--NQS-VRLYEWTTERE-LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGN  903 (1096)
T ss_pred             ceeehhhh--CCeEEEec--CcE-EEEEEccccce-ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCc
Confidence            55554432  67777653  333 99999987644 555566778899999988884 9999998888888777665533


Q ss_pred             CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      .    ......-+..+.+++.+-.+.. ++.+..++.+.+.
T Consensus       904 f----~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v  939 (1096)
T KOG1897|consen  904 F----EEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTV  939 (1096)
T ss_pred             e----EEeehhhCccceeeEEEecCce-EEeecccccEEEE
Confidence            2    0112223677888888876654 4555555555554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.16  E-value=0.0024  Score=34.11  Aligned_cols=30  Identities=10%  Similarity=0.312  Sum_probs=27.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEecc
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE   73 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~   73 (253)
                      ..|..++|+ |..++||.|+.+|.|.++.+.
T Consensus        12 ~~v~~~~w~-P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWC-PTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEEC-CCCCEEEEEECCCeEEEEECC
Confidence            579999999 889999999999999999983

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.11  E-value=0.043  Score=42.35  Aligned_cols=152  Identities=11%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC-CCCe-
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD-KEHS-  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~-  119 (253)
                      +.+..+.-+ +++++++++.......-||.....-...-+.....|..|.|. ++.+.+.+ ..|.|+.=+... .+.. 
T Consensus       145 gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  145 GSINDITRS-SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             --EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             ceeEeEEEC-CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            567888877 888888887665555677764332222222346789999999 77766654 888888877221 1111 


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee--ecccccceeEEEEecCCCCeEEEecCCC
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQRHQASVNAIAWAPHSSCHICTAGDDS  197 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg  197 (253)
                      ..+.......-.+..++|.+ +....++|+ .+.  .+.....++.-.+.  ...-...++.+.|.+..  .-+.-+.+|
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~--l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--~gf~lG~~G  296 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGT--LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--KGFVLGQDG  296 (302)
T ss_dssp             --B-TTSS--S-EEEEEESS-SS-EEEEES-TT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETT--EEEEE-STT
T ss_pred             cccCCcccCceeeEEEEecC-CCCEEEEeC-Ccc--EEEeCCCCccceECccccCCCCceEEEEEcCCC--ceEEECCCc
Confidence            11111112222588899998 666666554 443  34444444321121  11224457888887664  444555678


Q ss_pred             cEEEE
Q 035558          198 QALIW  202 (253)
Q Consensus       198 ~i~iw  202 (253)
                      .|.-|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.08  E-value=0.043  Score=45.43  Aligned_cols=148  Identities=15%  Similarity=0.167  Sum_probs=85.2

Q ss_pred             ccEEEEEecCCCeE-EEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC----CCCEEEEEEeCCCeEEEE
Q 035558           86 KEVYDIAWGGVGVF-ASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ----DPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        86 ~~v~~~~~~~~~~l-~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~~i~~~  158 (253)
                      .++..++|.||+.+ ++.-  .+|.+++=|-      .++..    -..|..+.|.|.    ...+||+-. ... |.+|
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGq----FEhV~GlsW~P~~~~~~paLLAVQH-kkh-VtVW   87 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQ----FEHVHGLSWAPPCTADTPALLAVQH-KKH-VTVW   87 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc------cEeec----cceeeeeeecCcccCCCCceEEEec-cce-EEEE
Confidence            58899999955544 3431  2333322111      12211    126888999884    235666543 444 9999


Q ss_pred             ECCCCC----CCeeeecc-cc----cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE
Q 035558          159 DIRFPT----LPVVELQR-HQ----ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ  229 (253)
Q Consensus       159 d~~~~~----~~~~~~~~-~~----~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  229 (253)
                      .+.-..    +.+..... ..    ---....|+|..+ .|+.-.....-.+++++......      ..-....+.|.+
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srV------kaDi~~~G~IhC  160 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRV------KADIKTSGLIHC  160 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceE------EEeccCCceEEE
Confidence            886321    11111111 11    1224578999985 66665555454567777655433      344466789999


Q ss_pred             EEEcCCCCceE-EEEcCCcEEEEE
Q 035558          230 LQWSSSQPDWV-AIAFSTKLQILR  252 (253)
Q Consensus       230 ~~~~~~~~~~~-~~~~~~~i~vw~  252 (253)
                      .+|.+||++++ |.++.=.-.+||
T Consensus       161 ACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  161 ACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             EEecCcCCEEEEEeCCeEEEEEec
Confidence            99999999877 455544556775

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.05  E-value=0.13  Score=42.03  Aligned_cols=160  Identities=17%  Similarity=0.201  Sum_probs=89.6

Q ss_pred             CeeEEEecCCCCCEEEEE-eCCC----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC-----------
Q 035558           44 PLTSFDWNEAEPRRIGTS-SIDT----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG-----------  106 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~-~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-----------  106 (253)
                      .+...+++ |+++++|-+ +..|    .|+++|+++++.+...-... ....+.|. +++.|+....+.           
T Consensus       125 ~~~~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            34467788 888887755 4444    59999999997655321111 12238999 767665554332           


Q ss_pred             cEEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC---eEEEEECCCC---CCCeeeecccccce-e
Q 035558          107 SVRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA---KVVVLDIRFP---TLPVVELQRHQASV-N  178 (253)
Q Consensus       107 ~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~---~~~~~~~~~~~~~i-~  178 (253)
                      .|+.|.+.+.... ..++...........+..++ ++++++.....+.   .+.+.|+...   ......+......+ .
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence            3788888776543 34444433332366788888 8888776655443   3788888774   22344444333333 3


Q ss_pred             EEEEecCCCCeEEEec---CCCcEEEEeccCCC
Q 035558          179 AIAWAPHSSCHICTAG---DDSQALIWDLSSMG  208 (253)
Q Consensus       179 ~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~  208 (253)
                      .+... .+ .+++...   ..+.|.-.++....
T Consensus       282 ~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  282 YVDHH-GD-RLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             EEEcc-CC-EEEEeeCCCCCCcEEEEecccccc
Confidence            34433 33 3444332   34667667776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.03  E-value=0.029  Score=47.51  Aligned_cols=107  Identities=14%  Similarity=0.235  Sum_probs=65.7

Q ss_pred             CEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEe--cCCCCeEEEecCCCcEEEEeccCCC----CCCCCCCC
Q 035558          143 RYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWA--PHSSCHICTAGDDSQALIWDLSSMG----QPVEGGLD  216 (253)
Q Consensus       143 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~  216 (253)
                      +.+++...++..+.|||.+.............+.|..+.|.  |++ +.+++.+..+.|.+|--....    .|.-....
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence            34555566676799999987652222222456789999986  577 577788888999998543221    11100001


Q ss_pred             CeeeccCC-CceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          217 PILAYTAG-AEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       217 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ......++ .+|.+..|.++|.  +.++.++.+.|++
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~--LvV~sGNqlfv~d  154 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGT--LVVGSGNQLFVFD  154 (631)
T ss_pred             EEEeecCCCCCccceeEecCCe--EEEEeCCEEEEEC
Confidence            12223443 6899999999985  3444456677653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.03  E-value=0.17  Score=43.08  Aligned_cols=177  Identities=9%  Similarity=0.010  Sum_probs=94.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-C-----eEEEEeccCceeee--eeeccc
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-T-----TCTIWDIEREAVDT--QLIAHD   85 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~vwd~~~~~~~~--~~~~~~   85 (253)
                      .+..||...+  .+.....+....      .-.+++..  ++...++|+.| |     .+..||....+-..  .+....
T Consensus       302 ~ve~yd~~~~--~w~~~a~m~~~r------~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R  371 (571)
T KOG4441|consen  302 SVECYDPKTN--EWSSLAPMPSPR------CRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR  371 (571)
T ss_pred             eeEEecCCcC--cEeecCCCCccc------ccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc
Confidence            5777777763  223333333222      23345553  56788889888 3     56778887765222  222111


Q ss_pred             ccEEEEEecCCCeEEEEeCCCc-----EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-----eE
Q 035558           86 KEVYDIAWGGVGVFASVSADGS-----VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-----KV  155 (253)
Q Consensus        86 ~~v~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-----~i  155 (253)
                      .. .+++..++.+.+.|+.||.     +-.||.++.+-. ..............+.+   ++.+.++||.++.     ++
T Consensus       372 ~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sv  446 (571)
T KOG4441|consen  372 SD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSV  446 (571)
T ss_pred             cc-ceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceE
Confidence            11 1222227889999999865     677787776521 11111111112222222   7888888886653     37


Q ss_pred             EEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCc-----EEEEeccCCC
Q 035558          156 VVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ-----ALIWDLSSMG  208 (253)
Q Consensus       156 ~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~  208 (253)
                      ..||..+.. ..+..+..-... ..++.-. + .+.+.|+.|+.     |..||..+.+
T Consensus       447 e~YDP~t~~W~~~~~M~~~R~~-~g~a~~~-~-~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  447 ECYDPETNTWTLIAPMNTRRSG-FGVAVLN-G-KIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             EEEcCCCCceeecCCccccccc-ceEEEEC-C-EEEEECCccCCCccceEEEEcCCCCc
Confidence            788887754 112222211111 1233333 3 57788887763     6678877755

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.01  E-value=0.0033  Score=33.54  Aligned_cols=30  Identities=23%  Similarity=0.616  Sum_probs=27.3

Q ss_pred             ccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558          174 QASVNAIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                      ...|..++|+|..+ +||.++.||.|.+|.+
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC
Confidence            35689999999995 9999999999999998

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.079  Score=38.06  Aligned_cols=178  Identities=11%  Similarity=0.086  Sum_probs=92.4

Q ss_pred             CCceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            4 KPDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ++.++.+.+.    .|++||+.++    +.+..-.-.....|...|+.+    .+ .+..-.-.+|.-..+|..+.+.+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~g----q~~~s~~l~~~~~FgEGit~~----gd-~~y~LTw~egvaf~~d~~t~~~lg  125 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTG----QEIFSEKLAPDTVFGEGITKL----GD-YFYQLTWKEGVAFKYDADTLEELG  125 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCc----eEEEEeecCCccccccceeec----cc-eEEEEEeccceeEEEChHHhhhhc
Confidence            5667777662    9999999976    433332222222222334322    12 222333467888999999888777


Q ss_pred             eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeee--ccCCCCCCeeEEEeeCCCCCEEEEEE--------
Q 035558           80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIY--ESSEPDTPLVRLGWNKQDPRYMATII--------  149 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~--------  149 (253)
                      .+. .++.=+.++.. +..|+.+....+++.-|.++-.....+.  ....+-..++.+.|-  +|.+.|-.=        
T Consensus       126 ~~~-y~GeGWgLt~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI  201 (262)
T COG3823         126 RFS-YEGEGWGLTSD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARI  201 (262)
T ss_pred             ccc-cCCcceeeecC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEE
Confidence            665 34555666654 4445555555566666655433222211  111111233344443  333322221        


Q ss_pred             --eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec
Q 035558          150 --MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       150 --~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                        ..|..+..+|+......+..-..|..-.+.+++.|++++++++|-
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence              223323334544332222233345667899999999877777774

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.93  E-value=0.11  Score=44.75  Aligned_cols=147  Identities=11%  Similarity=0.145  Sum_probs=90.5

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeee------eee----------------cccccEEEEEec---CCCeEEEEeCCCcEE
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDT------QLI----------------AHDKEVYDIAWG---GVGVFASVSADGSVR  109 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~------~~~----------------~~~~~v~~~~~~---~~~~l~~~~~dg~i~  109 (253)
                      .++++.|. .+.|.||++.......      .+.                .-...|+.|...   +...|+.|.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777765 6799999986432210      000                012346666555   677899999999999


Q ss_pred             EEEcCCC-----------C------CeeeeeccCCCCCCeeEEEee--CCCCCEEEEEEeCCCeEEEEECCCC--CCCee
Q 035558          110 VFDLRDK-----------E------HSTIIYESSEPDTPLVRLGWN--KQDPRYMATIIMDSAKVVVLDIRFP--TLPVV  168 (253)
Q Consensus       110 i~d~~~~-----------~------~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~--~~~~~  168 (253)
                      +|.++.-           +      .+.+.... .-...++.++++  . ..++||+++.... |.||-....  +....
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rlIAVSsNs~~-VTVFaf~l~~~r~~~~  204 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRLIAVSSNSQE-VTVFAFALVDERFYHV  204 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceEEEEecCCce-EEEEEEeccccccccc
Confidence            9976310           0      00111111 122378889998  5 6677777776666 777754432  21111


Q ss_pred             eecccccceeEEEEecCC--CC---eEEEecCCCcEEEEecc
Q 035558          169 ELQRHQASVNAIAWAPHS--SC---HICTAGDDSQALIWDLS  205 (253)
Q Consensus       169 ~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg~i~iwd~~  205 (253)
                      .-..+...|.++.|-++.  +.   .+++++-.|.+.+|++.
T Consensus       205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            122356678899998754  12   67888999999999983

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.93  E-value=0.14  Score=40.61  Aligned_cols=205  Identities=12%  Similarity=0.056  Sum_probs=94.6

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW   93 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~   93 (253)
                      .+.+.|+.++    + +..+.....    .......++ ++.+.++-...+..|+-.|+++.+....+......+-...|
T Consensus        61 nly~lDL~t~----~-i~QLTdg~g----~~~~g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~  130 (386)
T PF14583_consen   61 NLYLLDLATG----E-ITQLTDGPG----DNTFGGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTW  130 (386)
T ss_dssp             EEEEEETTT-----E-EEE---SS-----B-TTT-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEE
T ss_pred             ceEEEEcccC----E-EEECccCCC----CCccceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccce
Confidence            7888888884    3 333433321    222345566 55666655555568888999998765555555555544555


Q ss_pred             c---CCCeEEEEeC----------------------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           94 G---GVGVFASVSA----------------------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        94 ~---~~~~l~~~~~----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      .   ++..++-.-.                      ...|.-.|+.+++.. .+..   ....+..+.|+|.++.+|+.|
T Consensus       131 v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~---~~~wlgH~~fsP~dp~li~fC  206 (386)
T PF14583_consen  131 VANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFE---DTDWLGHVQFSPTDPTLIMFC  206 (386)
T ss_dssp             EE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEE---ESS-EEEEEEETTEEEEEEEE
T ss_pred             eeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEe---cCccccCcccCCCCCCEEEEe
Confidence            4   4444432211                      123444566665532 2222   123788999999888888887


Q ss_pred             EeCC--C-eEEEEECCCCCCCeeeecccc--cceeEEEEecCCCCeEEEec----CCCcEEEEeccCCCCCCCCCCCCee
Q 035558          149 IMDS--A-KVVVLDIRFPTLPVVELQRHQ--ASVNAIAWAPHSSCHICTAG----DDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       149 ~~~~--~-~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      -...  . .-++|-+++.......+..+.  ..+..=-|.|+|..+...+-    .+..|.-+|+.++...        .
T Consensus       207 HEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~--------~  278 (386)
T PF14583_consen  207 HEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR--------R  278 (386)
T ss_dssp             E-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE--------E
T ss_pred             ccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce--------E
Confidence            5422  1 124565544332233333332  23444578999964444222    3445666677665421        1


Q ss_pred             eccCCCceeEEEEcCCCCceEEE
Q 035558          220 AYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                       .....+...+--+++++ ++++
T Consensus       279 -~~~~p~~~H~~ss~Dg~-L~vG  299 (386)
T PF14583_consen  279 -LMEMPWCSHFMSSPDGK-LFVG  299 (386)
T ss_dssp             -EEEE-SEEEEEE-TTSS-EEEE
T ss_pred             -EEeCCceeeeEEcCCCC-EEEe
Confidence             11222344555677886 4443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.89  E-value=0.0035  Score=45.22  Aligned_cols=65  Identities=9%  Similarity=0.042  Sum_probs=50.0

Q ss_pred             CCCCEEEEEeCCCeEEEEeccCceeeeeeeccc-ccEEEEEec-CCCeEEEE--eCCCcEEEEEcCCCC
Q 035558           53 AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD-KEVYDIAWG-GVGVFASV--SADGSVRVFDLRDKE  117 (253)
Q Consensus        53 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~  117 (253)
                      .++.+..++..||.|+.|+.+..+.+.....|+ .++..+... .++.++.+  |.|..++.|++....
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence            345588899999999999999888777766777 566666666 77777777  788888888887554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.87  E-value=0.13  Score=39.28  Aligned_cols=143  Identities=14%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-----
Q 035558           95 GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-----  169 (253)
Q Consensus        95 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-----  169 (253)
                      .++.|+.|..+| +.++++........+...    ..|..+...| +-+.+++-+ |+. +.++++.........     
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~-~~~~llvLs-d~~-l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLP-ELNLLLVLS-DGQ-LYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEec-ccCEEEEEc-CCc-cEEEEchhhccccccccccc
Confidence            578899999999 999999433322222221    1499999998 555555544 366 999998765432210     


Q ss_pred             --------ecccccceeEEE--EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          170 --------LQRHQASVNAIA--WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       170 --------~~~~~~~i~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                              .......+...+  -.+.+...|+.+ ...+|.+|.........   ........-...+.+++|.++   .
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f---~~~~ke~~lp~~~~~i~~~~~---~  150 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSF---SKLLKEISLPDPPSSIAFLGN---K  150 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccc---cceeEEEEcCCCcEEEEEeCC---E
Confidence                    111223344444  123332344444 45599999887742110   011233445688899999843   3


Q ss_pred             EEEEcCCcEEEEE
Q 035558          240 VAIAFSTKLQILR  252 (253)
Q Consensus       240 ~~~~~~~~i~vw~  252 (253)
                      ++.+..+...+.+
T Consensus       151 i~v~~~~~f~~id  163 (275)
T PF00780_consen  151 ICVGTSKGFYLID  163 (275)
T ss_pred             EEEEeCCceEEEe
Confidence            3333344444444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA03098 kelch-like protein; Provisional

Probab=96.85  E-value=0.22  Score=42.19  Aligned_cols=147  Identities=11%  Similarity=0.010  Sum_probs=72.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCceee--eeeecccccEEEEEecCCCeEEEEeCC------CcEEEEEcCCCCCee
Q 035558           54 EPRRIGTSSID-----TTCTIWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSAD------GSVRVFDLRDKEHST  120 (253)
Q Consensus        54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  120 (253)
                      ++..++.|+.+     ..+..||..+.+-.  ..+...... .+++..++..++.|+.+      ..+..||..+.+-. 
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS-  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee-
Confidence            46777778765     24677888765422  112111111 12222267777777732      35888998876421 


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-------CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEE
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-------AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~  192 (253)
                      .....+..... .++...  ++.+++.||.+.       ..+.+||..+.+- .+..+.........+.+  ++ ++++.
T Consensus       420 ~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~  493 (534)
T PHA03098        420 KGSPLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN-KIYVV  493 (534)
T ss_pred             ecCCCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC-EEEEE
Confidence            11111111111 122222  566677776432       1278889876541 11111111111111222  44 56777


Q ss_pred             ecCC-----CcEEEEeccCCC
Q 035558          193 AGDD-----SQALIWDLSSMG  208 (253)
Q Consensus       193 ~~~d-----g~i~iwd~~~~~  208 (253)
                      |+.+     +.+.+||..+..
T Consensus       494 GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        494 GGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             cCCcCCcccceeEEEeCCCCE
Confidence            7754     467888877654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.80  E-value=0.15  Score=38.97  Aligned_cols=143  Identities=15%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee--
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ--   80 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--   80 (253)
                      .++.|+.|.+ .+.+++....   .......+.       .+|..+... ++-+.+++-+ |+.++++++........  
T Consensus         6 ~~~~L~vGt~~Gl~~~~~~~~---~~~~~i~~~-------~~I~ql~vl-~~~~~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    6 WGDRLLVGTEDGLYVYDLSDP---SKPTRILKL-------SSITQLSVL-PELNLLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             CCCEEEEEECCCEEEEEecCC---ccceeEeec-------ceEEEEEEe-cccCEEEEEc-CCccEEEEchhhccccccc
Confidence            3456666665 8999998332   122222222       358888888 5566665554 59999999876543331  


Q ss_pred             ------------eecccccEEEEE-ec--CCCeEEEEeCCCcEEEEEcCCCCC-e-eeeeccCCCCCCeeEEEeeCCCCC
Q 035558           81 ------------LIAHDKEVYDIA-WG--GVGVFASVSADGSVRVFDLRDKEH-S-TIIYESSEPDTPLVRLGWNKQDPR  143 (253)
Q Consensus        81 ------------~~~~~~~v~~~~-~~--~~~~l~~~~~dg~i~i~d~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~  143 (253)
                                  .......+...+ -.  .+...+.......|.+|....... . ....+..- ...+.+++|.   ++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~---~~  149 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL---GN  149 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe---CC
Confidence                        011223455555 11  344444444555899998876421 1 22222222 2488899997   45


Q ss_pred             EEEEEEeCCCeEEEEECCCCC
Q 035558          144 YMATIIMDSAKVVVLDIRFPT  164 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~  164 (253)
                      .++++..++  ..+.|+.+..
T Consensus       150 ~i~v~~~~~--f~~idl~~~~  168 (275)
T PF00780_consen  150 KICVGTSKG--FYLIDLNTGS  168 (275)
T ss_pred             EEEEEeCCc--eEEEecCCCC
Confidence            666666444  8889998644

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.15  Score=38.61  Aligned_cols=197  Identities=13%  Similarity=0.127  Sum_probs=108.9

Q ss_pred             CCCCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----CeEEEEecc
Q 035558            2 CQKPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----TTCTIWDIE   73 (253)
Q Consensus         2 p~~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~   73 (253)
                      |..+.-++.+-.   ...++|.+..    +...++...+...|   .-.=.|| +++.+|...-.|     |.|-|||.+
T Consensus        77 p~~~ravafARrPGtf~~vfD~~~~----~~pv~~~s~~~RHf---yGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          77 PALPRAVAFARRPGTFAMVFDPNGA----QEPVTLVSQEGRHF---YGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             CCCcceEEEEecCCceEEEECCCCC----cCcEEEecccCcee---ecccccC-CCCcEEEeecCCCCCCCceEEEEecc
Confidence            555566666654   6778888776    33333322221111   1122477 889988866433     689999987


Q ss_pred             Cc-eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEE--------EcCCCCCeeeeec-----------c--CCCCC
Q 035558           74 RE-AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVF--------DLRDKEHSTIIYE-----------S--SEPDT  130 (253)
Q Consensus        74 ~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~--------d~~~~~~~~~~~~-----------~--~~~~~  130 (253)
                      .+ +.+..+..|.-....+.+. |++.++.+.  |-|...        ++.+.++...+..           .  ..+.-
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l  226 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL  226 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence            44 3566777888778889999 999888764  333333        2222222111111           0  11223


Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCe---EEEEECCCCCCCeeeec-------ccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAK---VVVLDIRFPTLPVVELQ-------RHQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~---i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      .|..++..+ ++..+..+-+.|..   --+.-.....+++..+.       .-...|-+++.+.+.....+|+=..+...
T Consensus       227 SiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         227 SIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             ceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            677777776 66666655444320   00111111112222222       12346778888876543445555777888


Q ss_pred             EEeccCCCC
Q 035558          201 IWDLSSMGQ  209 (253)
Q Consensus       201 iwd~~~~~~  209 (253)
                      +||..++..
T Consensus       306 i~da~tG~v  314 (366)
T COG3490         306 IWDAATGAV  314 (366)
T ss_pred             EEEcCCCcE
Confidence            999999874

>PHA02713 hypothetical protein; Provisional

Probab=96.74  E-value=0.059  Score=45.71  Aligned_cols=93  Identities=6%  Similarity=0.002  Sum_probs=51.4

Q ss_pred             eEEEEeccCcee--eeeeecccccEEEEEecCCCeEEEEeCCC------cEEEEEcCC-CCCeeeeeccCCCCCCeeEEE
Q 035558           66 TCTIWDIEREAV--DTQLIAHDKEVYDIAWGGVGVFASVSADG------SVRVFDLRD-KEHSTIIYESSEPDTPLVRLG  136 (253)
Q Consensus        66 ~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~~~i~~~~  136 (253)
                      .+..||.++.+-  +..+...... .+++..++.+.+.|+.++      .+..||.++ ++ ...+...+........+.
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTESRLSALHTIL  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCcccccceeEE
Confidence            477788877652  2222211111 122222677777777542      467899887 43 233333333222222233


Q ss_pred             eeCCCCCEEEEEEeCC--CeEEEEECCCCC
Q 035558          137 WNKQDPRYMATIIMDS--AKVVVLDIRFPT  164 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~--~~i~~~d~~~~~  164 (253)
                      +   ++.+.++|+.++  . +..||..+.+
T Consensus       511 ~---~~~iyv~Gg~~~~~~-~e~yd~~~~~  536 (557)
T PHA02713        511 H---DNTIMMLHCYESYML-QDTFNVYTYE  536 (557)
T ss_pred             E---CCEEEEEeeecceee-hhhcCccccc
Confidence            3   778889998887  4 7778877654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.73  E-value=0.16  Score=38.22  Aligned_cols=175  Identities=12%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             CCceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            4 KPDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ++.++-+++.    .|+.+|+.++    +......-.. .-|..   .++..  +..+..-.=.++...+||..+.+.+.
T Consensus        55 ~g~LyESTG~yG~S~l~~~d~~tg----~~~~~~~l~~-~~FgE---Git~~--~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   55 DGTLYESTGLYGQSSLRKVDLETG----KVLQSVPLPP-RYFGE---GITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             TTEEEEEECSTTEEEEEEEETTTS----SEEEEEE-TT-T--EE---EEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CCEEEEeCCCCCcEEEEEEECCCC----cEEEEEECCc-cccce---eEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence            4556666552    8999999986    4443332221 11112   33443  34444455578999999999998888


Q ss_pred             eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeecc--CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYES--SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ++. ..+.=+.++. +++.|+.......++.+|..+-+....+...  ...-..++.+.|.  ++.+.|=.=.... |..
T Consensus       125 ~~~-y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~-I~~  199 (264)
T PF05096_consen  125 TFP-YPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDR-IVR  199 (264)
T ss_dssp             EEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSE-EEE
T ss_pred             EEe-cCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCe-EEE
Confidence            876 3456677775 4666666666778999998876644433321  1122356667775  3443333222333 555


Q ss_pred             EECCCCCCCeeee---------------cccccceeEEEEecCCCCeEEEec
Q 035558          158 LDIRFPTLPVVEL---------------QRHQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       158 ~d~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      .|..++.. +..+               .....-.+.+|+.|..+++++||-
T Consensus       200 Idp~tG~V-~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  200 IDPETGKV-VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EETTT-BE-EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EeCCCCeE-EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            56555431 1111               011356899999998877777775

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.73  E-value=0.13  Score=37.22  Aligned_cols=149  Identities=15%  Similarity=0.224  Sum_probs=85.7

Q ss_pred             CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-----eEEEE-ECCCC---CCCe
Q 035558           97 GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-----KVVVL-DIRFP---TLPV  167 (253)
Q Consensus        97 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-----~i~~~-d~~~~---~~~~  167 (253)
                      +.|..+...+.|.+|++.+.... .+..... -+.|..+.++. .|+++++--.+..     .+++| +.+..   ..++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~-~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECP-LLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCc-eeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            55555566788999999944432 2222222 24899999999 8999998765442     25655 22221   1222


Q ss_pred             e-eeccc---------------------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC-----CCCCCeee
Q 035558          168 V-ELQRH---------------------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE-----GGLDPILA  220 (253)
Q Consensus       168 ~-~~~~~---------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~  220 (253)
                      . ++.+|                     ..++.+++.+|-.+ -|+.|+ ++++.+|.+........     .-+.....
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~  183 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLID  183 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhh
Confidence            1 22221                     34677888888664 455555 56889998876443110     00000011


Q ss_pred             ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..-+-.+..+++..+   ++|..++..+++++|
T Consensus       184 ~~~~~~p~~v~ic~~---yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  184 HIDNFKPTQVAICEG---YIAVMSDLEVLVLKL  213 (215)
T ss_pred             eecCceEEEEEEEee---EEEEecCCEEEEEEE
Confidence            111334567777643   778888888998875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.72  E-value=0.19  Score=39.16  Aligned_cols=137  Identities=13%  Similarity=0.129  Sum_probs=81.5

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe----------CCCcEEEEEcCCCCCeeeeeccCCCC----
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS----------ADGSVRVFDLRDKEHSTIIYESSEPD----  129 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~----  129 (253)
                      +.++++|..+++.+..+..  +-.-.+..+ +++.+++++          ..-.|.+||..+-.....+..+.++.    
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4799999998887776653  222335566 777777643          34569999999886544443333211    


Q ss_pred             CCeeEEEeeCCCCCEEEEEEeCC-CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          130 TPLVRLGWNKQDPRYMATIIMDS-AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       130 ~~i~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .....++++. +++++++....- .+|.|.|+...+. +.++..  ..+..+  -|.++.-+.+-+.||++.-..+....
T Consensus        95 ~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kv-v~ei~~--PGC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~G  168 (342)
T PF06433_consen   95 PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKV-VGEIDT--PGCWLI--YPSGNRGFSMLCGDGSLLTVTLDADG  168 (342)
T ss_dssp             --GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEEG--TSEEEE--EEEETTEEEEEETTSCEEEEEETSTS
T ss_pred             ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCce-eeeecC--CCEEEE--EecCCCceEEEecCCceEEEEECCCC
Confidence            1334467777 777777665433 2488888887543 444432  122222  24443467777889999988887544


Q ss_pred             C
Q 035558          209 Q  209 (253)
Q Consensus       209 ~  209 (253)
                      +
T Consensus       169 k  169 (342)
T PF06433_consen  169 K  169 (342)
T ss_dssp             S
T ss_pred             C
Confidence            3

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.70  E-value=0.011  Score=30.59  Aligned_cols=32  Identities=13%  Similarity=0.076  Sum_probs=25.7

Q ss_pred             CCeeEEEeeCCCC--CEEEEEEeCCCeEEEEECCC
Q 035558          130 TPLVRLGWNKQDP--RYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus       130 ~~i~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~  162 (253)
                      +.+.+++|+|..+  ++|+.+...+. |.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence            3688999998555  67887777777 99999995

It contains a characteristic DLL sequence motif.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.70  E-value=0.29  Score=40.94  Aligned_cols=152  Identities=11%  Similarity=0.051  Sum_probs=79.9

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCee-EEEecCCCCCEEEEEe---------CCCeEEEEecc
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT-SFDWNEAEPRRIGTSS---------IDTTCTIWDIE   73 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~---------~dg~i~vwd~~   73 (253)
                      +.+++...+ .|..+|.+++    +.+...+..........+. +..+.   +..++.++         .+|.+..+|.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG----~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~  183 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETG----KQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVE  183 (488)
T ss_pred             CeEEEecCCCeEEEEECCCC----CEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECC
Confidence            344444445 8999999887    5555544332100000011 11121   24455554         36789999999


Q ss_pred             Cceeeeeeecccc--------------------cEE-EEEec-CCCeEEEEeCCC------------------cEEEEEc
Q 035558           74 REAVDTQLIAHDK--------------------EVY-DIAWG-GVGVFASVSADG------------------SVRVFDL  113 (253)
Q Consensus        74 ~~~~~~~~~~~~~--------------------~v~-~~~~~-~~~~l~~~~~dg------------------~i~i~d~  113 (253)
                      +++.+..++....                    .+. ..++. .+..++.++.++                  .|.-+|.
T Consensus       184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~  263 (488)
T cd00216         184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA  263 (488)
T ss_pred             CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence            9987776653211                    011 12333 356777777665                  6889999


Q ss_pred             CCCCCeeeeeccCCCCC----CeeEEEee---CCCCC---EEEEEEeCCCeEEEEECCCCCC
Q 035558          114 RDKEHSTIIYESSEPDT----PLVRLGWN---KQDPR---YMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus       114 ~~~~~~~~~~~~~~~~~----~i~~~~~~---~~~~~---~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                      ++++..-.... ..+..    ......+.   ..++.   .+++++.+|. +...|.++++.
T Consensus       264 ~tG~~~W~~~~-~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~  323 (488)
T cd00216         264 DTGKVKWFYQT-TPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGF-FYVLDRTTGKL  323 (488)
T ss_pred             CCCCEEEEeeC-CCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCce-EEEEECCCCcE
Confidence            98874322211 11100    00000111   11232   5677777887 99999998764

The alignment model contains an 8-bladed beta-propeller.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.07  Score=47.57  Aligned_cols=147  Identities=18%  Similarity=0.170  Sum_probs=88.5

Q ss_pred             cEEEEEec-CCCe--EEEEeCCCcEEEEEcCCCCCeee-----e---eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           87 EVYDIAWG-GVGV--FASVSADGSVRVFDLRDKEHSTI-----I---YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        87 ~v~~~~~~-~~~~--l~~~~~dg~i~i~d~~~~~~~~~-----~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ++..+... +...  ++..+.+-.|..||+++-.....     +   ...........++.|+|.-....++...|.. |
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-L  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-h
Confidence            34444444 5443  33344455799999986432110     0   0111122255678899865666777777777 8


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      .+..+......+..+. -....++++|+|.| +.++.|-..|++.-|...-..+.. ....| .  .....|.+|.|-..
T Consensus       181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~-ip~Pp-~--~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSE-IPEPP-V--EENYRVLSVTWLST  254 (1405)
T ss_pred             hhhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeecccceeec-ccCCC-c--CCCcceeEEEEecc
Confidence            8877765443233322 35678999999999 699999999999999665432111 00111 1  12678999999877


Q ss_pred             CCceE
Q 035558          236 QPDWV  240 (253)
Q Consensus       236 ~~~~~  240 (253)
                      ...++
T Consensus       255 ~eflv  259 (1405)
T KOG3630|consen  255 QEFLV  259 (1405)
T ss_pred             eeEEE
Confidence            65444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.53  E-value=0.27  Score=42.90  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=55.2

Q ss_pred             CCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC----------CC--Ceeee--------cccccceeEEEEecCC--C
Q 035558          130 TPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP----------TL--PVVEL--------QRHQASVNAIAWAPHS--S  187 (253)
Q Consensus       130 ~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~----------~~--~~~~~--------~~~~~~i~~~~~~~~~--~  187 (253)
                      -.|..+.++| +|.+++..|..+  |.|..+...          +.  ....+        ..+...|..+.|+|.+  +
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            3788999999 999999988866  555555321          10  01111        1234578899999974  2


Q ss_pred             CeEEEecCCCcEEEEeccCCCCCC
Q 035558          188 CHICTAGDDSQALIWDLSSMGQPV  211 (253)
Q Consensus       188 ~~l~~~~~dg~i~iwd~~~~~~~~  211 (253)
                      ..|+.-..|+++|+||+.....+.
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHPW  185 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCCe
Confidence            588888899999999998766543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.43  Score=40.97  Aligned_cols=179  Identities=11%  Similarity=0.156  Sum_probs=89.2

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee--e--ecccccEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ--L--IAHDKEVY   89 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~--~~~~~~v~   89 (253)
                      .|+||+...     +++..+.-..     .++..+.|+ .+. .|+....+|++++|++-... +..  .  ......|.
T Consensus        65 ~I~If~~sG-----~lL~~~~w~~-----~~lI~mgWs-~~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~  131 (829)
T KOG2280|consen   65 YIRIFNISG-----QLLGRILWKH-----GELIGMGWS-DDE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIV  131 (829)
T ss_pred             eEEEEeccc-----cchHHHHhcC-----CCeeeeccc-CCc-eEEEEeccceEEEeecchhh-hcccccccccccCcee
Confidence            477888776     4444433332     467899998 544 45566799999999986332 222  1  12223454


Q ss_pred             EEEec-CCCeEEEEeCCCcEEE-EEcCCCCCeeeeeccCCCCCCeeEEEe-eCCC-CCEEEEEEeCCCeEEEEECCCCCC
Q 035558           90 DIAWG-GVGVFASVSADGSVRV-FDLRDKEHSTIIYESSEPDTPLVRLGW-NKQD-PRYMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus        90 ~~~~~-~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~-~~~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                      ...+. +|=.+++.  +|.+.+ -+..... .......+....+..|-.. .|.. ...++-....-. ..++-......
T Consensus       132 ec~~f~~GVavlt~--~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~  207 (829)
T KOG2280|consen  132 ECRFFHNGVAVLTV--SGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV  207 (829)
T ss_pred             EEEEecCceEEEec--CCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc
Confidence            44444 44333333  344433 3333322 1111111122112122222 2211 112221111111 22333332222


Q ss_pred             CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      ....+......+..+..+|+. ++|+--..+|.|.+-+....+..
T Consensus       208 q~~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  208 QLHALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQIL  251 (829)
T ss_pred             cccccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecchhhhh
Confidence            223333334567889999998 69998889999999888765543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.44  E-value=0.22  Score=42.42  Aligned_cols=112  Identities=18%  Similarity=0.184  Sum_probs=68.8

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec---CCCeEEEEeCCCcEEEEEcCC-----
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRD-----  115 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~-----  115 (253)
                      ..-+.-+ ..+...++-+....+.|||.+.+.....-. ...+.|.++.|.   +++.+++.+....|.++--..     
T Consensus        32 ~~li~gs-s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   32 PSLISGS-SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             cceEeec-ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            3344444 333333333344579999999876443322 457899999998   888899999999999985421     


Q ss_pred             CC----CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558          116 KE----HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus       116 ~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      ..    ..+.+........+|.+..|.+ +|.+++.++  +. +.++|-.
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nq-lfv~dk~  156 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQ-LFVFDKW  156 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CE-EEEECCC
Confidence            11    1122211122224788999997 776655443  22 8888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.12  Score=41.61  Aligned_cols=141  Identities=8%  Similarity=0.086  Sum_probs=88.4

Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC---
Q 035558           89 YDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL---  165 (253)
Q Consensus        89 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~---  165 (253)
                      +.+-|.|.+..+.+-..|.+.-|-......-.++......+++|.++.|++ |.+.+|+--.+.. |.+++....+.   
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~-v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKT-VDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCce-EEEEecCCCchhhH
Confidence            334455444444555556677777665543333333344566999999999 8899998877777 99998743221   


Q ss_pred             CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      ...+-+..+..|.+..|..+.  -++.-+. .-+-+|.+.......      .....|...|+--.|.++.+.++
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s~--e~A~i~~-~G~e~y~v~pekrsl------RlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSST--EIAFITD-QGIEFYQVLPEKRSL------RLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             HHHHhccCcceeEEEEEecCe--eEEEEec-CCeEEEEEchhhhhh------hhhhhcccCccEEEEccccceEe
Confidence            112223334568899998875  4555443 346777766544332      35556778888888888876444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.38  E-value=0.29  Score=37.08  Aligned_cols=103  Identities=14%  Similarity=0.049  Sum_probs=72.0

Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecC-----CCcEEEEec
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGD-----DSQALIWDL  204 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~-----dg~i~iwd~  204 (253)
                      ....++|+|..+.-++.+-.-|+...++|.....+++..... .....-.-.|+|+| .+|+..-.     -|.|-|||.
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEec
Confidence            344688999778888888888888899999887764432211 11122234799999 57765543     388999999


Q ss_pred             cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          205 SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      +..-...      -....|.-....+.|.+||+.++
T Consensus       148 r~~fqrv------gE~~t~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         148 REGFQRV------GEFSTHGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             cccccee------cccccCCcCcceeEEecCCcEEE
Confidence            8654332      35567788888999999998544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.37  E-value=0.29  Score=37.01  Aligned_cols=150  Identities=17%  Similarity=0.133  Sum_probs=82.2

Q ss_pred             cEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE-CCCC
Q 035558           87 EVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD-IRFP  163 (253)
Q Consensus        87 ~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d-~~~~  163 (253)
                      .+.+.+.+ +++.++... .++.-.+|-...+.......    ....+..-.|++ ++...++...+.. ..++. ....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~-~g~~W~v~~~~~~-~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDP-DGWVWTVDDGSGG-VRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccC-CCCEEEEEcCCCc-eEEEEecCCC
Confidence            67888999 888776655 23333344334333222322    112677778999 6776666665555 56653 2332


Q ss_pred             CCCeeeeccc--ccceeEEEEecCCCCeEEEe--cCCCcEEEEeccCCCC--CCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          164 TLPVVELQRH--QASVNAIAWAPHSSCHICTA--GDDSQALIWDLSSMGQ--PVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       164 ~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ..........  ...|..+.++|||.+..+..  ..++.|.+=-+.....  +................+.+++|.+++.
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            2111222211  12899999999995443333  2457777776553321  1100011112223467899999999987


Q ss_pred             ceEEE
Q 035558          238 DWVAI  242 (253)
Q Consensus       238 ~~~~~  242 (253)
                      .++..
T Consensus       179 L~V~~  183 (253)
T PF10647_consen  179 LVVLG  183 (253)
T ss_pred             EEEEe
Confidence            44443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.24  E-value=0.032  Score=28.92  Aligned_cols=32  Identities=9%  Similarity=0.123  Sum_probs=26.9

Q ss_pred             CCeeEEEecCCCC--CEEEEEeCCCeEEEEeccC
Q 035558           43 GPLTSFDWNEAEP--RRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus        43 ~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~   74 (253)
                      ++|.++.|+|..+  ++|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999996566  7888888889999999985

It contains a characteristic DLL sequence motif.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.18  E-value=0.71  Score=39.56  Aligned_cols=184  Identities=14%  Similarity=0.162  Sum_probs=97.6

Q ss_pred             CCeeEEEecCCCCCEEEEEe------CCC--eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC--------
Q 035558           43 GPLTSFDWNEAEPRRIGTSS------IDT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD--------  105 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--------  105 (253)
                      ..+.+.+++ ++++.++...      .|.  .|.+++.. +.......+  ...+.-.|+ +++.+.+....        
T Consensus       350 ~~vsspaiS-pdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALS-RSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceEC-CCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            356788899 7888776654      233  45555542 222222222  236777888 87777766533        


Q ss_pred             ----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE---EECCCCCCCe---eeecc-cc
Q 035558          106 ----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV---LDIRFPTLPV---VELQR-HQ  174 (253)
Q Consensus       106 ----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~---~d~~~~~~~~---~~~~~-~~  174 (253)
                          +.+.+.+++.+....      ...+.|..+.|+| ++..++... ++. |++   -....+...+   ..+.. -.
T Consensus       426 ~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             cCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecccC
Confidence                223222333322110      2234799999999 888887765 354 766   3322222111   11222 22


Q ss_pred             cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCc
Q 035558          175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTK  247 (253)
Q Consensus       175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  247 (253)
                      ..+.++.|.+++ . |+++..++.-.+|.+.-.....    ..........++.+|+=++.  .++....++.
T Consensus       497 ~~~~~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~----~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        497 DTAVSLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNS----DALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             CccccceEecCC-E-EEEEecCCCCceEEEecCCccc----cccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            346889999998 4 4455555555666654332211    00011123567777877764  3555444543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.3  Score=39.49  Aligned_cols=155  Identities=9%  Similarity=0.124  Sum_probs=94.7

Q ss_pred             eEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeee-ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQL-IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~-~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      +.+-|.  +.+..+.+...|-+.-|-+....  ..-.+ ...+++|.++.|+ |.+.+|.--.|++|.+++....+....
T Consensus        26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            455565  33333333344556666654332  11122 2356799999999 999999999999999999854432222


Q ss_pred             e-eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCCcE
Q 035558          122 I-YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDSQA  199 (253)
Q Consensus       122 ~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i  199 (253)
                      . .........|..+.|..  ..-+|.....|  +-+|-.......+...+.|...|+=..|+++-.-.|++.+ ..+++
T Consensus       104 ~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G--~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l  179 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTS--STEIAFITDQG--IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL  179 (657)
T ss_pred             HHHHhccCcceeEEEEEec--CeeEEEEecCC--eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence            1 12222333588889985  35666655555  7777766555556777778888888889988732333333 45555


Q ss_pred             EEEeccC
Q 035558          200 LIWDLSS  206 (253)
Q Consensus       200 ~iwd~~~  206 (253)
                      .=+.++.
T Consensus       180 npf~~~~  186 (657)
T KOG2377|consen  180 NPFHFRA  186 (657)
T ss_pred             ccEEEee
Confidence            4444443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.11  E-value=0.46  Score=40.53  Aligned_cols=148  Identities=13%  Similarity=0.079  Sum_probs=83.3

Q ss_pred             CCCCEEEEEeCCC------eEEEEeccCceee--eeeecccccEEEEEecCCCeEEEEeCC------CcEEEEEcCCCCC
Q 035558           53 AEPRRIGTSSIDT------TCTIWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSAD------GSVRVFDLRDKEH  118 (253)
Q Consensus        53 ~~~~~l~~~~~dg------~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~  118 (253)
                      ..+.+++.|+.++      .+..+|..+++-.  ..+. ....-.+++..++.+.++|+.|      ..+..||.++++-
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence            3466777777763      6778888877422  2232 2223344444477889999998      3577888888762


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC----eEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEe
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA----KVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                       ..+..............+   ++.+.|+||.+|.    ++-.||.++.+- .+..+..   ...+.+...-+.++.++|
T Consensus       362 -~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  362 -TPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGGKLYIIG  434 (571)
T ss_pred             -eccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECCEEEEEc
Confidence             222222222111111222   7888999998863    377888876541 1222221   222222222222577778


Q ss_pred             cCC------CcEEEEeccCCC
Q 035558          194 GDD------SQALIWDLSSMG  208 (253)
Q Consensus       194 ~~d------g~i~iwd~~~~~  208 (253)
                      |.|      .++..||..+..
T Consensus       435 G~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CcCCCccccceEEEEcCCCCc
Confidence            755      356778887765

>PHA03098 kelch-like protein; Provisional

Probab=96.02  E-value=0.71  Score=39.15  Aligned_cols=147  Identities=6%  Similarity=-0.047  Sum_probs=70.9

Q ss_pred             CCCEEEEEeCCC------eEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCee
Q 035558           54 EPRRIGTSSIDT------TCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHST  120 (253)
Q Consensus        54 ~~~~l~~~~~dg------~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  120 (253)
                      ++..++.|+.++      .+..||..+.+-..  .+....... +++..++.+++.||.+     ..+..||..+.+-. 
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-
Confidence            355666666542      46778877665322  111111111 2222267788888865     34777888766421 


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEec
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      .....+...... +++..  ++.+.+.||...     ..+..||..+..- .+..+...... .+++. .++ ++++.|+
T Consensus       372 ~~~~lp~~r~~~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~-~iyv~GG  445 (534)
T PHA03098        372 EEPPLIFPRYNP-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDG-KIYVIGG  445 (534)
T ss_pred             eCCCcCcCCccc-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECC-EEEEECC
Confidence            111111111111 12222  567777777421     2388899876431 11111111111 12222 234 4666676


Q ss_pred             CC--------CcEEEEeccCCC
Q 035558          195 DD--------SQALIWDLSSMG  208 (253)
Q Consensus       195 ~d--------g~i~iwd~~~~~  208 (253)
                      .+        ..+.+||..+.+
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCc
Confidence            43        238888888765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.94  E-value=0.49  Score=35.66  Aligned_cols=188  Identities=9%  Similarity=-0.040  Sum_probs=101.0

Q ss_pred             eeEEEecCCCCCEEEEEeCCC--eEEEEeccCceeeeeeecc-cccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           45 LTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVDTQLIAH-DKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      ...+.|. .++.++-+.+.-|  .|+.+|+.+++......-. .----.++..++..+.-.=.++...+||..+-+....
T Consensus        47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence            4577885 5677777777666  7999999999866544311 1111223333344444445688899999988764443


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cc---cceeEEEEecCCCCeEEEecCC
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQ---ASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      +.- .   +.-+.++.   ++..|+.+..... ++++|..+.+. ...+.-  ..   ..++-+.|- +| ...|=.=..
T Consensus       126 ~~y-~---~EGWGLt~---dg~~Li~SDGS~~-L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~t  194 (264)
T PF05096_consen  126 FPY-P---GEGWGLTS---DGKRLIMSDGSSR-LYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQT  194 (264)
T ss_dssp             EE--S---SS--EEEE---CSSCEEEE-SSSE-EEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-TT-EEEEEETTS
T ss_pred             Eec-C---CcceEEEc---CCCEEEEECCccc-eEEECCcccce-EEEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCC
Confidence            322 1   23344552   6666776666666 99999877553 333321  11   235556665 34 344545555


Q ss_pred             CcEEEEeccCCCCCCCCC--------CCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          197 SQALIWDLSSMGQPVEGG--------LDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                      ..|...|..++.......        ...........-.+.|||.|....++..|.
T Consensus       195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            666666776665321000        000000112456899999998877766553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.85  E-value=0.64  Score=36.24  Aligned_cols=182  Identities=10%  Similarity=-0.026  Sum_probs=98.5

Q ss_pred             CCceEEeecCcEEEEEccCCccccceeeee-cCCCCccccCCeeEEEecCCCCCEEEEEeC-----------CCeEEEEe
Q 035558            4 KPDLLATSSDFLRVWRISDEDRRVELKSLL-NGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-----------DTTCTIWD   71 (253)
Q Consensus         4 ~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~vwd   71 (253)
                      .+..|+++...+.+++.+.+ ......... .+...    ...+.+... +++.+.++...           -|.|+.++
T Consensus        76 ~~g~Lv~~~~g~~~~~~~~~-~~~t~~~~~~~~~~~----~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~  149 (307)
T COG3386          76 AGGRLIACEHGVRLLDPDTG-GKITLLAEPEDGLPL----NRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVD  149 (307)
T ss_pred             CCCeEEEEccccEEEeccCC-ceeEEeccccCCCCc----CCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEc
Confidence            34456666667777777553 110111111 11111    345566777 67776654433           12344444


Q ss_pred             ccCceeeeeeecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCC--CCC--eeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558           72 IEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRD--KEH--STIIYESSEPDTPLVRLGWNKQDPRYM  145 (253)
Q Consensus        72 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~--~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l  145 (253)
                      . .+..+..+..+-..-+.|+|+ +++.++.+.. .+.|.-|++..  ...  ...........+..-.++... ++++.
T Consensus       150 p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw  227 (307)
T COG3386         150 P-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLW  227 (307)
T ss_pred             C-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEE
Confidence            3 355555555555566889999 8877666654 57888887763  110  011111112233445566666 77777


Q ss_pred             EEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec-CCCCeEEEecC
Q 035558          146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP-HSSCHICTAGD  195 (253)
Q Consensus       146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~  195 (253)
                      +++...+..|..|+.. ++ .+..+.-....+++++|-- +...+++|+..
T Consensus       228 ~~a~~~g~~v~~~~pd-G~-l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         228 VAAVWGGGRVVRFNPD-GK-LLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             EecccCCceEEEECCC-Cc-EEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence            6555554239999988 44 3555555446677777764 44334444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.83  E-value=0.64  Score=40.71  Aligned_cols=71  Identities=11%  Similarity=0.246  Sum_probs=42.6

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----------cee---eeee--------ecccccEEEEEec----CCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----------EAV---DTQL--------IAHDKEVYDIAWG----GVG   97 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~---~~~~--------~~~~~~v~~~~~~----~~~   97 (253)
                      -.|..|..| +++++++..+..|. .|..+-.          ++.   .+++        ..+...|..+.|+    ++.
T Consensus        85 f~v~~i~~n-~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLN-PTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEEC-CCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            367788899 89999988887664 3433321          110   0011        1223466677777    356


Q ss_pred             eEEEEeCCCcEEEEEcCC
Q 035558           98 VFASVSADGSVRVFDLRD  115 (253)
Q Consensus        98 ~l~~~~~dg~i~i~d~~~  115 (253)
                      .|+.-..|+++|+||+..
T Consensus       163 ~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             eEEEEecCCEEEEEecCC
Confidence            677777777777777753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.81  E-value=0.0039  Score=53.65  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=58.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC--CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDI   91 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~   91 (253)
                      .+.||+++--...+++...+  |....+...+.-+.|+|  ++..++..+..++.|++....+... ..+++|...+.++
T Consensus       154 ~lfVy~vd~l~G~iq~~l~v--~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  154 ELFVYDVDVLQGEIQPQLEV--TPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM  230 (1283)
T ss_pred             hhheeehHhhccccccceEE--eecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence            56778876432222222222  22112224556677775  4567788888889998877654432 3445677666665


Q ss_pred             Ee-----------c-CCCeEEEEeCCCcEEEEEcC
Q 035558           92 AW-----------G-GVGVFASVSADGSVRVFDLR  114 (253)
Q Consensus        92 ~~-----------~-~~~~l~~~~~dg~i~i~d~~  114 (253)
                      +|           + ||..|+.++.||.++.|.+.
T Consensus       231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             HHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            44           4 67777777888877777654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.76  E-value=0.79  Score=36.62  Aligned_cols=153  Identities=14%  Similarity=0.198  Sum_probs=74.6

Q ss_pred             EecCCCCCEEEE-EeCCC--eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558           49 DWNEAEPRRIGT-SSIDT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE  124 (253)
Q Consensus        49 ~~~~~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  124 (253)
                      +|. .+++.|+- +..||  .+++.|+++++..+--.+.........++ +++.++-......|+-.|+++.+.. .++.
T Consensus        42 ~ft-~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~vy~  119 (386)
T PF14583_consen   42 CFT-DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER-VVYE  119 (386)
T ss_dssp             -B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE-EEEE
T ss_pred             CcC-CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE-EEEE
Confidence            455 66755554 44444  67778898887665443322223344555 6666665656678899999998643 3443


Q ss_pred             cCCCCCCeeEEEee-CCCCCEEEEEEeC---------------------CCeEEEEECCCCCCCeeeecccccceeEEEE
Q 035558          125 SSEPDTPLVRLGWN-KQDPRYMATIIMD---------------------SAKVVVLDIRFPTLPVVELQRHQASVNAIAW  182 (253)
Q Consensus       125 ~~~~~~~i~~~~~~-~~~~~~l~~~~~~---------------------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  182 (253)
                      .+.  ..+-...|. +.++..++-.-..                     ...|.-.|+++++  ...+..-...+..+.|
T Consensus       120 ~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~~f  195 (386)
T PF14583_consen  120 VPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHVQF  195 (386)
T ss_dssp             --T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEE
T ss_pred             CCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccCccc
Confidence            332  244445554 2244444332110                     0125555666544  3444444556788999


Q ss_pred             ecCCCCeEEEecC---CCc-EEEEeccCC
Q 035558          183 APHSSCHICTAGD---DSQ-ALIWDLSSM  207 (253)
Q Consensus       183 ~~~~~~~l~~~~~---dg~-i~iwd~~~~  207 (253)
                      +|..+.+|+-|-+   |.. -|||-+...
T Consensus       196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~d  224 (386)
T PF14583_consen  196 SPTDPTLIMFCHEGPWDLVDQRIWTINTD  224 (386)
T ss_dssp             ETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred             CCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence            9988766666553   332 366766543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=0.12  Score=46.23  Aligned_cols=114  Identities=12%  Similarity=0.094  Sum_probs=75.9

Q ss_pred             CeeEEEeeCCCCCEEEEEE-eCCCeEEEEECCCCCCCe----eeec------ccccceeEEEEecCCCCeEEEecCCCcE
Q 035558          131 PLVRLGWNKQDPRYMATII-MDSAKVVVLDIRFPTLPV----VELQ------RHQASVNAIAWAPHSSCHICTAGDDSQA  199 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~-~~~~~i~~~d~~~~~~~~----~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i  199 (253)
                      ++..+...+ +....++.. .+|..|..||+++.....    .-+.      .......++.|+|.-+...+....|+.|
T Consensus       102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            556666666 555544433 334458999998654211    1111      1223567789999876667788899999


Q ss_pred             EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++..+.......       .........++++|+|.|+.++.+-..|.+.-|.
T Consensus       181 ~V~~~~~~~~~v-------~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  181 RVKSTKQLAQNV-------TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             hhhhhhhhhhhh-------cccCcccceeeEEeccccceeeEecCCCeEEEee
Confidence            998877654332       3345577889999999999888888888776553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.62  E-value=1.2  Score=37.73  Aligned_cols=196  Identities=9%  Similarity=-0.006  Sum_probs=104.2

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCe-------eEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPL-------TSFDWNEAEPRRIGTSSIDTTCTIWDIERE   75 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   75 (253)
                      ++.+++++.+ .|.-.|..++    +.+..+........ .+.       ..+++.   +..++.++.|+.|.-.|.+++
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TG----k~lW~~~~~~~~~~-~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TG  140 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTG----KELWKYDPKLPDDV-IPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTG  140 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCC----ceeeEecCCCCccc-ccccccccccccceEE---CCEEEEEcCCCEEEEEECCCC
Confidence            4445555555 8888898887    55544432110000 010       112222   356777888999999999999


Q ss_pred             eeeeeeec--cc--ccEEEEEecCCCeEEEEe------CCCcEEEEEcCCCCCeeeeeccCCC-----------------
Q 035558           76 AVDTQLIA--HD--KEVYDIAWGGVGVFASVS------ADGSVRVFDLRDKEHSTIIYESSEP-----------------  128 (253)
Q Consensus        76 ~~~~~~~~--~~--~~v~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~-----------------  128 (253)
                      +.+.....  +.  ..+.+--.-.+..++.+.      .+|.|..+|.++++..-........                 
T Consensus       141 k~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~  220 (527)
T TIGR03075       141 KVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA  220 (527)
T ss_pred             CEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence            98765542  11  112111111233444443      2689999999988743222111110                 


Q ss_pred             -----------CCCe-eEEEeeCCCCCEEEEEEeC-----C----------CeEEEEECCCCCCCeeeecc--ccc----
Q 035558          129 -----------DTPL-VRLGWNKQDPRYMATIIMD-----S----------AKVVVLDIRFPTLPVVELQR--HQA----  175 (253)
Q Consensus       129 -----------~~~i-~~~~~~~~~~~~l~~~~~~-----~----------~~i~~~d~~~~~~~~~~~~~--~~~----  175 (253)
                                 ...+ ..+++.| ...+++.+..+     +          .+|.-.|+++++. .-.++.  |..    
T Consensus       221 ~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~-~W~~Q~~~~D~wD~d  298 (527)
T TIGR03075       221 KTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI-KWHYQTTPHDEWDYD  298 (527)
T ss_pred             CCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE-EEeeeCCCCCCcccc
Confidence                       0011 1246666 45555555422     1          1366778877663 333332  211    


Q ss_pred             ---ceeEEEEecCCC--CeEEEecCCCcEEEEeccCCCC
Q 035558          176 ---SVNAIAWAPHSS--CHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       176 ---~i~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                         ...-+....+|.  ..++.+..+|.+.+.|.++++.
T Consensus       299 ~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       299 GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence               111122324552  3788999999999999998864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.57  E-value=0.82  Score=35.51  Aligned_cols=155  Identities=8%  Similarity=0.057  Sum_probs=73.2

Q ss_pred             cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           83 AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .-.+.+..+.-. ++.+++++.......-||--... ..+...  .....|..|.|.| ++.+.+++ ..+. |++=+..
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r--~~~~riq~~gf~~-~~~lw~~~-~Gg~-~~~s~~~  215 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNR--NSSRRIQSMGFSP-DGNLWMLA-RGGQ-IQFSDDP  215 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE----SSS-EEEEEE-T-TS-EEEEE-TTTE-EEEEE-T
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEcc--CccceehhceecC-CCCEEEEe-CCcE-EEEccCC
Confidence            345678888877 88888887766666677755432 112221  2234899999999 77776654 4444 7776622


Q ss_pred             CC----CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          162 FP----TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       162 ~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ..    .+++..+....-.+..++|.+++ ...++|+ .|.+ +.....++.=.    .......-...++.+.|.+..+
T Consensus       216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~----~~~~~~~~~~n~~~i~f~~~~~  288 (302)
T PF14870_consen  216 DDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQ----KDRVGENVPSNLYRIVFVNPDK  288 (302)
T ss_dssp             TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-E----E-GGGTTSSS---EEEEEETTE
T ss_pred             CCccccccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccce----ECccccCCCCceEEEEEcCCCc
Confidence            11    11122222223357899999987 4666555 4543 33344443211    0001112355688888876654


Q ss_pred             ceEEEEcCCcEEEE
Q 035558          238 DWVAIAFSTKLQIL  251 (253)
Q Consensus       238 ~~~~~~~~~~i~vw  251 (253)
                       -++.+.++.+--|
T Consensus       289 -gf~lG~~G~ll~~  301 (302)
T PF14870_consen  289 -GFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEE-STTEEEEE
T ss_pred             -eEEECCCcEEEEe
Confidence             5667777765433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.41  E-value=0.87  Score=36.90  Aligned_cols=173  Identities=12%  Similarity=0.067  Sum_probs=78.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe--------------------CCCeEEEEecc
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS--------------------IDTTCTIWDIE   73 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~dg~i~vwd~~   73 (253)
                      .+.+.|-++-    +.....+.....  ..--..+.|. +..+.++|..                    ...++.+||+.
T Consensus       158 gf~llD~~tf----~v~g~We~~~~~--~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~  230 (461)
T PF05694_consen  158 GFVLLDGETF----EVKGRWEKDRGP--QPFGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS  230 (461)
T ss_dssp             EEEEE-TTT------EEEE--SB-TT--------EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred             cEEEEcCccc----cccceeccCCCC--CCCCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence            5566665542    444443332210  0223466777 5666666653                    24579999999


Q ss_pred             Cceeeeeeecc-c-ccEEEEEec-CCC---eEEEEeCCCcEEEEEc-CCCC--CeeeeeccCC----------------C
Q 035558           74 REAVDTQLIAH-D-KEVYDIAWG-GVG---VFASVSADGSVRVFDL-RDKE--HSTIIYESSE----------------P  128 (253)
Q Consensus        74 ~~~~~~~~~~~-~-~~v~~~~~~-~~~---~l~~~~~dg~i~i~d~-~~~~--~~~~~~~~~~----------------~  128 (253)
                      +.+.++++.-- . ..+..+.|. +..   -|+.+-...+|..|-- +.++  ..+++.....                -
T Consensus       231 ~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~  310 (461)
T PF05694_consen  231 TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV  310 (461)
T ss_dssp             TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred             CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence            99999988732 2 346678887 332   2333334445555533 3222  0111111100                0


Q ss_pred             CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc------------------cccceeEEEEecCCCCeE
Q 035558          129 DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR------------------HQASVNAIAWAPHSSCHI  190 (253)
Q Consensus       129 ~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~l  190 (253)
                      ..-|+.+..+. +.++|.++..-.+.|+.||+.....|...-+-                  -.+....+..|-||.++.
T Consensus       311 P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY  389 (461)
T PF05694_consen  311 PPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY  389 (461)
T ss_dssp             ------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred             CCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence            23578899998 88888888876666999999987765433210                  112346678888885444


Q ss_pred             EEec
Q 035558          191 CTAG  194 (253)
Q Consensus       191 ~~~~  194 (253)
                      +|.|
T Consensus       390 vTnS  393 (461)
T PF05694_consen  390 VTNS  393 (461)
T ss_dssp             EE--
T ss_pred             EEee
Confidence            4544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.26  E-value=0.5  Score=38.33  Aligned_cols=75  Identities=12%  Similarity=0.029  Sum_probs=52.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEE-EEEec-C-C---------------C--eEEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVY-DIAWG-G-V---------------G--VFASV  102 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~-~-~---------------~--~l~~~  102 (253)
                      ..+.+++.+ |++++.++...-|.|.++|+.++..++.+++..+.=. -+... . .               .  +++-+
T Consensus       308 R~~~~i~~s-P~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  308 REGESICLS-PSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             ceEEEEEEC-CCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            457889999 7788888888889999999999988887776543211 11111 1 1               1  33455


Q ss_pred             eCCCcEEEEEcCCCCC
Q 035558          103 SADGSVRVFDLRDKEH  118 (253)
Q Consensus       103 ~~dg~i~i~d~~~~~~  118 (253)
                      -.-|.|.+|.++++..
T Consensus       387 prRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPR  402 (415)
T ss_pred             ccCCeEEEEecCCCCE
Confidence            6788899999888763

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.25  E-value=0.84  Score=33.68  Aligned_cols=100  Identities=11%  Similarity=0.162  Sum_probs=64.0

Q ss_pred             eEEEecCCCCCE-EEEEeCCCeEEEEe--ccCce-----eeeeeec----ccccEEEEEec-CCCeEEEEeCCCcEEEEE
Q 035558           46 TSFDWNEAEPRR-IGTSSIDTTCTIWD--IEREA-----VDTQLIA----HDKEVYDIAWG-GVGVFASVSADGSVRVFD  112 (253)
Q Consensus        46 ~~~~~~~~~~~~-l~~~~~dg~i~vwd--~~~~~-----~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d  112 (253)
                      +.++|+ .+.+. .++-+.+-.|.-||  ..++.     .+..++.    .....-.++.. +|++++++-..++|...|
T Consensus       161 Ngl~Wd-~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWD-SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             cccccc-ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            578888 55544 45556677787787  55553     2222221    11122345667 899999999999999999


Q ss_pred             cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558          113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      ..+++....+..   +...+++++|--.+-..+++..
T Consensus       240 p~tGK~L~eikl---Pt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  240 PTTGKILLEIKL---PTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCCcEEEEEEc---CCCceEEEEecCCCccEEEEEe
Confidence            999985554443   3448999999643334554433

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.17  E-value=1.1  Score=34.45  Aligned_cols=99  Identities=11%  Similarity=0.131  Sum_probs=61.0

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe------CCCcEEEEEcCCCCCeeeeecc-CCCCCCeeEEE
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS------ADGSVRVFDLRDKEHSTIIYES-SEPDTPLVRLG  136 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~~~~  136 (253)
                      ..|++||..+.+-...-.+-.+.|++|.|. +.++++.|.      ....+..||+.+..-...-... ....+++..+.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            468999988776444444566899999998 766766664      3556888998877521111111 12346888888


Q ss_pred             eeCCCCCEEE-EEEe-CC-CeEEEEECCCC
Q 035558          137 WNKQDPRYMA-TIIM-DS-AKVVVLDIRFP  163 (253)
Q Consensus       137 ~~~~~~~~l~-~~~~-~~-~~i~~~d~~~~  163 (253)
                      +...+...+. .|.. ++ ..|..||-.+.
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W  125 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDGSSW  125 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcCCce
Confidence            8654555444 3331 22 24777876543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.16  E-value=0.91  Score=37.56  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC--CC-------CCe---ee-------ec-ccccceeEEEEecCC--CC
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF--PT-------LPV---VE-------LQ-RHQASVNAIAWAPHS--SC  188 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~~-------~~~---~~-------~~-~~~~~i~~~~~~~~~--~~  188 (253)
                      .|..+..++ .|..++.+|.+|  |.+..+..  +.       ++.   .+       +. ...-.+..++|+|+.  +.
T Consensus       105 eV~~vl~s~-~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  105 EVYQVLLSP-TGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEecC-CCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence            566677777 788888777777  44444411  00       000   00       00 111246678999987  56


Q ss_pred             eEEEecCCCcEEEEeccCCCCC
Q 035558          189 HICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      .|..-+.|..||+||+......
T Consensus       182 hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eEEEEecCcEEEEEecCCcchh
Confidence            8888889999999999887644

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=1.1  Score=34.23  Aligned_cols=136  Identities=16%  Similarity=0.192  Sum_probs=83.1

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~   90 (253)
                      .++|.|+.++ ..+..+..+.-.      +--.++..   .+++...+..|.-+.+.|+.+.+   ....+.........
T Consensus       107 GL~IvDIS~P-~sP~~~~~lnt~------gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~  176 (370)
T COG5276         107 GLRIVDISTP-DSPTLIGFLNTD------GYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHD  176 (370)
T ss_pred             ceEEEeccCC-CCcceeccccCC------ceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCcee
Confidence            8999999886 333444444331      12234444   48888888855556778887654   22333333333455


Q ss_pred             EEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558           91 IAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus        91 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                      ++.+ |++-..+..|+-+.+.|+.....+..+.... ....+.++..++ +..+++.  .+.+ +.+-|....+.
T Consensus       177 v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsd-nr~y~vv--y~eg-vlivd~s~~ss  245 (370)
T COG5276         177 VAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSD-NRAYLVV--YDEG-VLIVDVSGPSS  245 (370)
T ss_pred             EEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecC-CeeEEEE--cccc-eEEEecCCCCC
Confidence            5554 7777777889999999999887665554332 222677777765 4444443  4445 88888776553

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.02  E-value=0.0028  Score=50.81  Aligned_cols=140  Identities=15%  Similarity=0.225  Sum_probs=92.0

Q ss_pred             EEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCe-EEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558           47 SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGV-FASVSADGSVRVFDLRDKEHSTIIYE  124 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~  124 (253)
                      ...|- +++.-++.++.+..+..||-.. +...... .++...+++|. ++.. ++.+-..+.+.+||+.+......-..
T Consensus        39 ~~~w~-~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   39 IHRWR-PEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             eeeEe-cCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            45677 4444477777788888888763 3333332 35566778888 5554 44566788999999987652222211


Q ss_pred             cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCC
Q 035558          125 SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDS  197 (253)
Q Consensus       125 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  197 (253)
                      . .+  .-.-+.|++ ....++.+...+. +.+|+.+..+. ......|...++++++.+.+  +.+.++.|.
T Consensus       116 g-~~--s~sll~wsK-g~~el~ig~~~gn-~viynhgtsR~-iiv~Gkh~RRgtq~av~lEd--~vil~dcd~  180 (615)
T KOG2247|consen  116 G-TS--SKSLLAWSK-GTPELVIGNNAGN-IVIYNHGTSRR-IIVMGKHQRRGTQIAVTLED--YVILCDCDN  180 (615)
T ss_pred             C-cc--hHHHHhhcc-CCccccccccccc-eEEEeccchhh-hhhhcccccceeEEEecccc--eeeecCcHH
Confidence            1 11  112267888 6777778878888 99999987664 44555588899999999986  455555543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.95  E-value=1.6  Score=35.15  Aligned_cols=143  Identities=8%  Similarity=-0.024  Sum_probs=74.2

Q ss_pred             CeeEEEecCCCCCEEEEEe-----------CCC-eEEEEeccC--ce--eeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558           44 PLTSFDWNEAEPRRIGTSS-----------IDT-TCTIWDIER--EA--VDTQLIAHDKEVYDIAWG-GVGVFASVSADG  106 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg  106 (253)
                      ....++|. ++++++++-.           ..+ .|.+++-..  ++  ....+...-.....+++. ++ +++ +....
T Consensus        15 ~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        15 NPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            45588998 7888777642           223 677776532  22  223333233456788888 66 444 44444


Q ss_pred             cEEEEEcCCCC----Ceeee-eccCC----CCCCeeEEEeeCCCCCEEEEEEeC-------------------CCeEEEE
Q 035558          107 SVRVFDLRDKE----HSTII-YESSE----PDTPLVRLGWNKQDPRYMATIIMD-------------------SAKVVVL  158 (253)
Q Consensus       107 ~i~i~d~~~~~----~~~~~-~~~~~----~~~~i~~~~~~~~~~~~l~~~~~~-------------------~~~i~~~  158 (253)
                      ..++.|.....    ....+ .....    +......++|.| ++.+.++-+..                   +. |.-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~r~  169 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LFRY  169 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCce-EEEE
Confidence            33444554321    11222 22211    123577899999 77766554421                   22 4444


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEec
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      |.....  ...+...-.....++|+|+| .++++-.
T Consensus       170 ~pdg~~--~e~~a~G~rnp~Gl~~d~~G-~l~~tdn  202 (367)
T TIGR02604       170 NPDGGK--LRVVAHGFQNPYGHSVDSWG-DVFFCDN  202 (367)
T ss_pred             ecCCCe--EEEEecCcCCCccceECCCC-CEEEEcc
Confidence            544322  22222222335689999998 4666544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.78  E-value=1.4  Score=33.73  Aligned_cols=152  Identities=10%  Similarity=0.112  Sum_probs=90.5

Q ss_pred             CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      +|++..++++... .--|+=...+    +.++++.-..-    ...-++.+. .++.+.++--.++.+.++.+.....+.
T Consensus        94 np~~rtLFav~n~p~~iVElt~~G----dlirtiPL~g~----~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          94 NPDTRTLFAVTNKPAAIVELTKEG----DLIRTIPLTGF----SDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             CCCcceEEEecCCCceEEEEecCC----ceEEEeccccc----CChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEE
Confidence            4777777777776 4444433333    55555432110    123367776 667777776778888888776553221


Q ss_pred             e-----ee----cc-cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-------CCCeeEEEeeCCC
Q 035558           80 Q-----LI----AH-DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP-------DTPLVRLGWNKQD  141 (253)
Q Consensus        80 ~-----~~----~~-~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~  141 (253)
                      .     ++    .+ +...-.++|. .+..|..+-+..-+.||................+       -..+..+.|++..
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence            1     11    12 4566789999 7778888888888888887754311111111111       1257788999866


Q ss_pred             CCEEEEEEeCCCeEEEEECCC
Q 035558          142 PRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus       142 ~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      +.+++-+..+.. +.-.|...
T Consensus       245 ~~LLVLS~ESr~-l~Evd~~G  264 (316)
T COG3204         245 NSLLVLSDESRR-LLEVDLSG  264 (316)
T ss_pred             CcEEEEecCCce-EEEEecCC
Confidence            666666665555 77777654

>PHA02790 Kelch-like protein; Provisional

Probab=94.77  E-value=2.1  Score=35.82  Aligned_cols=143  Identities=7%  Similarity=-0.046  Sum_probs=69.7

Q ss_pred             CCCEEEEEeCC--CeEEEEeccCce--eeeeeecccccEEEEEecCCCeEEEEeCCC---cEEEEEcCCCCCeeeeeccC
Q 035558           54 EPRRIGTSSID--TTCTIWDIEREA--VDTQLIAHDKEVYDIAWGGVGVFASVSADG---SVRVFDLRDKEHSTIIYESS  126 (253)
Q Consensus        54 ~~~~l~~~~~d--g~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~  126 (253)
                      ++...+.|+.+  ..+..||..+++  .+..+...... .+++..++.+.+.|+.++   .+..||.++..- .......
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W-~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASINNVIYVIGGHSETDTTTEYLLPNHDQW-QFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEECCEEEEecCcCCCCccEEEEeCCCCEE-EeCCCCC
Confidence            57777777754  357778876554  22222211111 122222788888887654   467888876642 1111111


Q ss_pred             CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEE
Q 035558          127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQAL  200 (253)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~  200 (253)
                      .+......+.+   ++.+.+.|+   . +.+||.++.+- .+..+....... +++.. ++ +..+.||.+     ..+.
T Consensus       396 ~~r~~~~~~~~---~~~IYv~GG---~-~e~ydp~~~~W~~~~~m~~~r~~~-~~~v~-~~-~IYviGG~~~~~~~~~ve  465 (480)
T PHA02790        396 YPHYKSCALVF---GRRLFLVGR---N-AEFYCESSNTWTLIDDPIYPRDNP-ELIIV-DN-KLLLIGGFYRGSYIDTIE  465 (480)
T ss_pred             CccccceEEEE---CCEEEEECC---c-eEEecCCCCcEeEcCCCCCCcccc-EEEEE-CC-EEEEECCcCCCcccceEE
Confidence            11111112222   555556553   3 77888876441 122222111122 23322 34 577777754     3566


Q ss_pred             EEeccCCC
Q 035558          201 IWDLSSMG  208 (253)
Q Consensus       201 iwd~~~~~  208 (253)
                      .||..+.+
T Consensus       466 ~Yd~~~~~  473 (480)
T PHA02790        466 VYNNRTYS  473 (480)
T ss_pred             EEECCCCe
Confidence            77766543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.71  E-value=1.4  Score=40.54  Aligned_cols=142  Identities=9%  Similarity=0.152  Sum_probs=83.5

Q ss_pred             eCCCeEEEEeccCceeeeeeecccccEEEEEec--CC-------CeEEEEeCCCcEEEEEcCCCCCee---ee---eccC
Q 035558           62 SIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GV-------GVFASVSADGSVRVFDLRDKEHST---II---YESS  126 (253)
Q Consensus        62 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-------~~l~~~~~dg~i~i~d~~~~~~~~---~~---~~~~  126 (253)
                      +.|..+.+|+.+++.....+.+-...|..+..-  ..       ++++....--.|.++-+.-.+...   ..   +...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            457899999999977666666666666665543  11       233333333345555443221100   00   1111


Q ss_pred             CCCCCeeEEEeeCCCCCEEEEEEeCCCeEE--EEECCCCCC-------------------Ceeeec-ccccceeEEEEec
Q 035558          127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVV--VLDIRFPTL-------------------PVVELQ-RHQASVNAIAWAP  184 (253)
Q Consensus       127 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~--~~d~~~~~~-------------------~~~~~~-~~~~~i~~~~~~~  184 (253)
                      .....|.++.... +|+.+++|- ||+ ++  +|....+..                   .+..+. .+..+|..+....
T Consensus       176 ~dg~~V~~I~~t~-nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTE-NGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEecc-CCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            2233688888554 777777654 445 43  333322110                   012223 5677999999998


Q ss_pred             CCCCeEEEecCCCcEEEEeccCC
Q 035558          185 HSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       185 ~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      .. ..+.+-++.|+|.+||+...
T Consensus       253 SR-~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  253 SR-NILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             cc-ceeeeeccCceEEEEEccCC
Confidence            87 69999999999999999873

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.60  E-value=1.3  Score=32.71  Aligned_cols=137  Identities=11%  Similarity=0.143  Sum_probs=72.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCC---------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeE-EEEeCCCcEEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSID---------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVF-ASVSADGSVRVF  111 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~dg~i~i~  111 (253)
                      ...+.-..+ |++++++-...|         |.++.|-..  ..+..+...-.--+.++|+ +...+ ++-+.+-.|.-|
T Consensus       109 nR~NDgkvd-P~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVD-PDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccC-CCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            345555566 788884432222         233333322  1122222222334578898 65544 455667778778


Q ss_pred             E--cCCCCC--eeeeeccCC----CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEe
Q 035558          112 D--LRDKEH--STIIYESSE----PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWA  183 (253)
Q Consensus       112 d--~~~~~~--~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~  183 (253)
                      |  ..++..  ...+.....    .....-.++... ++++.++. .++++|...|..+++. +.++.-....|++++|-
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~-~ng~~V~~~dp~tGK~-L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVAT-FNGGTVQKVDPTTGKI-LLEIKLPTPQITSCCFG  262 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEE-ecCcEEEEECCCCCcE-EEEEEcCCCceEEEEec
Confidence            7  444431  112221111    000112233443 55555554 4454599999999875 77777778899999997


Q ss_pred             cC
Q 035558          184 PH  185 (253)
Q Consensus       184 ~~  185 (253)
                      -.
T Consensus       263 Gk  264 (310)
T KOG4499|consen  263 GK  264 (310)
T ss_pred             CC
Confidence            54

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.59  E-value=3.2  Score=37.06  Aligned_cols=146  Identities=15%  Similarity=0.139  Sum_probs=85.2

Q ss_pred             cccccEEEEEec---C---CC-eEEEEeCCCcEEEEEcC------CCC---------CeeeeeccCCCCCCeeEEEeeCC
Q 035558           83 AHDKEVYDIAWG---G---VG-VFASVSADGSVRVFDLR------DKE---------HSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        83 ~~~~~v~~~~~~---~---~~-~l~~~~~dg~i~i~d~~------~~~---------~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      .-..+|..|+|.   .   .. .++..-....+.|+...      ...         ....+........+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            345688888876   1   11 23444445567777621      111         11112111223347888999999


Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCC----CCeeeeccccc----------ceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPT----LPVVELQRHQA----------SVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~----------~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      +...||+....|. ..|||+....    ........+.+          .-..+.|.++. ..|+.++ ...+.++|+++
T Consensus       157 ~~~q~AiVD~~G~-Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  157 DQRQFAIVDEKGN-WSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCN-RSKLMLIDFES  233 (765)
T ss_pred             ccceEEEEeccCc-EEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC-CEEEEEc-CCceEEEECCC
Confidence            9999999999998 9999992111    11111111112          23478888876 4666665 45788999987


Q ss_pred             CCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          207 MGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      .....     ..........|.++.-+|..
T Consensus       234 ~~~~~-----~l~~~~~~~~IlDv~~~~~~  258 (765)
T PF10214_consen  234 NWQTE-----YLVTAKTWSWILDVKRSPDN  258 (765)
T ss_pred             CCccc-----hhccCCChhheeeEEecCCc
Confidence            65421     02333456678888888773

These proteins are found in fungi.

>PHA02790 Kelch-like protein; Provisional

Probab=94.55  E-value=2.4  Score=35.50  Aligned_cols=141  Identities=10%  Similarity=-0.061  Sum_probs=67.8

Q ss_pred             CCceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---eEEEEeccCce
Q 035558            4 KPDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT---TCTIWDIEREA   76 (253)
Q Consensus         4 ~~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~   76 (253)
                      ++.+.+.|+.    .+..|+...+  .+.....+....     .....+.   .++.+.+.|+.++   .+..||.++.+
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~~~r-----~~~~~~~---~~g~IYviGG~~~~~~~ve~ydp~~~~  387 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLLKPR-----CNPAVAS---INNVIYVIGGHSETDTTTEYLLPNHDQ  387 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCC--eEEECCCCCCCC-----cccEEEE---ECCEEEEecCcCCCCccEEEEeCCCCE
Confidence            4455566652    6777876552  233332222111     1111222   3577778877654   46778887654


Q ss_pred             eee--eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-
Q 035558           77 VDT--QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-  153 (253)
Q Consensus        77 ~~~--~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-  153 (253)
                      -..  .+....... +++..++.+.+.|   |.+..||.++++- ..+........... ++..  ++.+.++||.++. 
T Consensus       388 W~~~~~m~~~r~~~-~~~~~~~~IYv~G---G~~e~ydp~~~~W-~~~~~m~~~r~~~~-~~v~--~~~IYviGG~~~~~  459 (480)
T PHA02790        388 WQFGPSTYYPHYKS-CALVFGRRLFLVG---RNAEFYCESSNTW-TLIDDPIYPRDNPE-LIIV--DNKLLLIGGFYRGS  459 (480)
T ss_pred             EEeCCCCCCccccc-eEEEECCEEEEEC---CceEEecCCCCcE-eEcCCCCCCccccE-EEEE--CCEEEEECCcCCCc
Confidence            221  222111111 2221266666666   4577899877642 22222222221222 2222  6677777775421 


Q ss_pred             ---eEEEEECCC
Q 035558          154 ---KVVVLDIRF  162 (253)
Q Consensus       154 ---~i~~~d~~~  162 (253)
                         .+..||..+
T Consensus       460 ~~~~ve~Yd~~~  471 (480)
T PHA02790        460 YIDTIEVYNNRT  471 (480)
T ss_pred             ccceEEEEECCC
Confidence               266666654

>PRK13684 Ycf48-like protein; Provisional

Probab=94.48  E-value=1.9  Score=34.11  Aligned_cols=151  Identities=9%  Similarity=0.054  Sum_probs=78.6

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEE-EeccCceeeeee-ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTI-WDIEREAVDTQL-IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~-~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                      ..+.++.+. +++.+++++ ..|.+.. ++- .++.-... ..-...++++.+. +++.++. +..|.+++=....+...
T Consensus       173 g~~~~i~~~-~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        173 GVVRNLRRS-PDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW  248 (334)
T ss_pred             ceEEEEEEC-CCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence            567888888 666666555 4565543 222 12211112 2334678888888 6666555 45676653223333322


Q ss_pred             eeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---ccccceeEEEEecCCCCeEEEecC
Q 035558          120 TIIYES-SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ---RHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       120 ~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      ...... ......+..+.+.| ++..+++ +.+|. +. .....++. -....   .-....+.+.|..++ +. +..+.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~-v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~-~~-~~~G~  321 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGT-LL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPE-KG-FVLGQ  321 (334)
T ss_pred             ccccCCccccccceeeEEEcC-CCCEEEE-cCCCe-EE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCC-ce-EEECC
Confidence            221111 11123578888988 6665554 44554 33 33333221 12221   122357778877665 34 55566


Q ss_pred             CCcEEEEec
Q 035558          196 DSQALIWDL  204 (253)
Q Consensus       196 dg~i~iwd~  204 (253)
                      .|.|.-|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            788877653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.41  E-value=2.3  Score=34.67  Aligned_cols=91  Identities=15%  Similarity=0.117  Sum_probs=52.4

Q ss_pred             CCCceEEeecC-c-EE---EEEccCCc-cccceeeeecCCCCccccCCeeEEEecC----------CCCCEEEEEeCCCe
Q 035558            3 QKPDLLATSSD-F-LR---VWRISDED-RRVELKSLLNGNKNSEYCGPLTSFDWNE----------AEPRRIGTSSIDTT   66 (253)
Q Consensus         3 ~~~~~l~~~~~-~-v~---iw~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~l~~~~~dg~   66 (253)
                      +++++||.+.+ . +.   -|+..... ..........+.-..+....|+++.|-|          ++...++.|..+|.
T Consensus        11 ~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~   90 (415)
T PF14655_consen   11 PDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGY   90 (415)
T ss_pred             CCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEecccE
Confidence            57778888764 2 22   35442210 1112222222222111114677776643          23578999999999


Q ss_pred             EEEEeccCceeeeeeecccccEEEEEec
Q 035558           67 CTIWDIEREAVDTQLIAHDKEVYDIAWG   94 (253)
Q Consensus        67 i~vwd~~~~~~~~~~~~~~~~v~~~~~~   94 (253)
                      |++|... |.++..-.-|..+|..+...
T Consensus        91 vrfyte~-G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   91 VRFYTEN-GVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             EEEEecc-chHHHHHhcCccceEEEEec
Confidence            9999874 66555445578888888775

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.33  E-value=1.4  Score=32.02  Aligned_cols=140  Identities=11%  Similarity=0.223  Sum_probs=78.7

Q ss_pred             CEEEEEeCCCeEEEEeccC--ceeeeeeecccccEEEEEec-CCCeEEEEeCCC------cEEEE-EcCCC----CCee-
Q 035558           56 RRIGTSSIDTTCTIWDIER--EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG------SVRVF-DLRDK----EHST-  120 (253)
Q Consensus        56 ~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg------~i~i~-d~~~~----~~~~-  120 (253)
                      +.|+.+.....|.+|+++.  .+....+.. -+.|..+.++ .|++++|--.+.      .+|+| +.+..    .+.. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            5555556678899999983  335556653 4789999999 999999874432      45664 22211    1111 


Q ss_pred             -------------------eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----Ceeeec-----
Q 035558          121 -------------------IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----PVVELQ-----  171 (253)
Q Consensus       121 -------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~-----  171 (253)
                                         .+.+.+. ..++.+++..|.+|++++.+  ++. +.+|.+.....     ....+.     
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~--~~~-l~lf~l~~~~~~~~~~~~lDFe~~l~~  183 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC--GNK-LVLFTLKYQTIQSEKFSFLDFERSLID  183 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc--CCE-EEEEEEEEEEEecccccEEechhhhhh
Confidence                               0111111 23677888888777776643  333 88887754221     111111     


Q ss_pred             cccc-ceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558          172 RHQA-SVNAIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       172 ~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                      -|.+ .+..+++..   .++|..+ +-.++++.+
T Consensus       184 ~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  184 HIDNFKPTQVAICE---GYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             eecCceEEEEEEEe---eEEEEec-CCEEEEEEE
Confidence            1111 245566653   3676665 455666654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.27  E-value=0.64  Score=38.28  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=85.3

Q ss_pred             CCCCEEE-EEeCCCeEEEEeccCceeeeeeecccccEEEEEec---------CCCeEEEEeCCCcEEEEEcCCCCC-eee
Q 035558           53 AEPRRIG-TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG---------GVGVFASVSADGSVRVFDLRDKEH-STI  121 (253)
Q Consensus        53 ~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---------~~~~l~~~~~dg~i~i~d~~~~~~-~~~  121 (253)
                      .+.++|+ .|..-..++-.|++.|+.+..+..|...+  +.|.         +.+.|+ |-.+..|.-.|.+-... +..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence            4455544 44555578888999999998888776553  4443         233444 44455555556664431 111


Q ss_pred             eeccC-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          122 IYESS-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       122 ~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      ..... .......+.. .. ...++|+++..|- |++||.-... ....+++-...|-.+..+.+|...|+||  ...+.
T Consensus       554 ~esKdY~tKn~Fss~~-tT-esGyIa~as~kGD-irLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTC--k~yll  627 (776)
T COG5167         554 VESKDYKTKNKFSSGM-TT-ESGYIAAASRKGD-IRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATC--KNYLL  627 (776)
T ss_pred             eeehhccccccccccc-cc-cCceEEEecCCCc-eeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEee--cceEE
Confidence            11111 0111122222 12 5679999999998 9999965422 2455666777899999999996444554  35677


Q ss_pred             EEeccC
Q 035558          201 IWDLSS  206 (253)
Q Consensus       201 iwd~~~  206 (253)
                      +-|++-
T Consensus       628 L~d~~i  633 (776)
T COG5167         628 LTDVPI  633 (776)
T ss_pred             EEeccc
Confidence            777653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.24  E-value=3.8  Score=36.46  Aligned_cols=151  Identities=13%  Similarity=0.069  Sum_probs=82.4

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeeeeecccccEE-------------EEEec---CCCeEEEEeC----------CCcE
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVY-------------DIAWG---GVGVFASVSA----------DGSV  108 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~---~~~~l~~~~~----------dg~i  108 (253)
                      +..++.++.|+.|.-.|.++++....+.. .+.|.             .+.-.   .+..++.|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45788889999999999999998866531 11110             01111   2455666643          6889


Q ss_pred             EEEEcCCCCCeeeeecc-CC-----CCC--------Ce-eEEEeeCCCCCEEEEEE------------------eCCCeE
Q 035558          109 RVFDLRDKEHSTIIYES-SE-----PDT--------PL-VRLGWNKQDPRYMATII------------------MDSAKV  155 (253)
Q Consensus       109 ~i~d~~~~~~~~~~~~~-~~-----~~~--------~i-~~~~~~~~~~~~l~~~~------------------~~~~~i  155 (253)
                      +-+|.++++..-..... ..     ..+        .+ ..++++| ...+++...                  ..+. |
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s-l  416 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSS-L  416 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccce-E
Confidence            99999999743222210 00     000        11 2345555 333333321                  1122 6


Q ss_pred             EEEECCCCCCCeeeecc--cc-------cceeEEEEec-CCC--CeEEEecCCCcEEEEeccCCCC
Q 035558          156 VVLDIRFPTLPVVELQR--HQ-------ASVNAIAWAP-HSS--CHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~--~~-------~~i~~~~~~~-~~~--~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      .-.|.++++. .-.++.  |.       ....-+.+.. +|.  ..++.++.+|.+.++|.++++.
T Consensus       417 vALD~~TGk~-~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       417 VALDATTGKE-RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             EEEeCCCCce-EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            6667776653 333332  21       0111122322 441  2788999999999999998873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.20  E-value=0.44  Score=35.13  Aligned_cols=69  Identities=10%  Similarity=0.167  Sum_probs=46.0

Q ss_pred             EecCCCCeEEEecCCCcEEEEeccCCCCCCCC-CCCCeeec------cCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          182 WAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-GLDPILAY------TAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +..++ .+|++-..+|.+++||+.+.+..... ...|....      .....|..+..+.+|.-+++-+ ++....|+
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            34455 58999999999999999998755422 11121111      4567889999998887555444 46667665

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.58  E-value=2.9  Score=34.71  Aligned_cols=136  Identities=10%  Similarity=0.045  Sum_probs=77.7

Q ss_pred             CCCeEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC------CCCEEEEEEeCCCeEEEEECCCCCCCe
Q 035558           95 GVGVFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ------DPRYMATIIMDSAKVVVLDIRFPTLPV  167 (253)
Q Consensus        95 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~~~d~~~~~~~~  167 (253)
                      +.++++ .|+....++--|++.++.+...   ..+. .+ -+.|.|.      ....-++|-.+.+ |.-.|.|-....+
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW---~~~d-dv-vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi  551 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEW---DLKD-DV-VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKI  551 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEe---ecCC-cc-eeecCCchhHHhcCccceEEeecccc-eEEecccccCCce
Confidence            444433 4555556666677766632221   1222 22 3455552      1222334445555 7777777554323


Q ss_pred             eeecc--c--ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          168 VELQR--H--QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       168 ~~~~~--~--~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      .....  .  .....+..-..+|  +++.+|..|-|++||.-.....       ..+.+.+..|..+..+.+|..++|.+
T Consensus       552 ~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAK-------talP~lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAK-------TALPGLGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             eeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcchhh-------hcCcccccceeeeEeecCCcEEEEee
Confidence            22211  1  1123333333444  8999999999999997654432       25566788999999999999888776


Q ss_pred             cC
Q 035558          244 FS  245 (253)
Q Consensus       244 ~~  245 (253)
                      ..
T Consensus       623 k~  624 (776)
T COG5167         623 KN  624 (776)
T ss_pred             cc
Confidence            54

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.55  E-value=0.85  Score=33.64  Aligned_cols=65  Identities=9%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCCCCeee------ec-------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPTLPVVE------LQ-------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~------~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      .+.++++.+.+|. +++||+.+.+..+..      +.       .....|..+.++.+| .-+++-+ +|..+.|+..-.
T Consensus        21 ~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   21 NGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccccc
Confidence            6788988899998 999999986532211      11       245678889999888 4566554 578899987654


Q ss_pred             C
Q 035558          208 G  208 (253)
Q Consensus       208 ~  208 (253)
                      .
T Consensus        98 ~   98 (219)
T PF07569_consen   98 C   98 (219)
T ss_pred             e
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=93.45  E-value=3.7  Score=33.72  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=25.0

Q ss_pred             cceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      ..|.+++..+.. +.|++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence            448899999988 6999999999999999986

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.29  E-value=5.2  Score=34.97  Aligned_cols=116  Identities=10%  Similarity=0.105  Sum_probs=72.4

Q ss_pred             CeeEEEeeCC-CCCEEEEEEeCCCeEEEEECCC-------C----C--------CCeeeecccccceeEEEEe--cCCCC
Q 035558          131 PLVRLGWNKQ-DPRYMATIIMDSAKVVVLDIRF-------P----T--------LPVVELQRHQASVNAIAWA--PHSSC  188 (253)
Q Consensus       131 ~i~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~-------~----~--------~~~~~~~~~~~~i~~~~~~--~~~~~  188 (253)
                      .|+.|....- +...|+++..||. |.+|.+..       .    .        .|...+. -...+++++++  ... +
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-r  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-R  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-e
Confidence            4555544332 3456666666776 99996521       0    0        1222222 24578999998  666 6


Q ss_pred             eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC---C---ceEEEEcCCcEEEEEC
Q 035558          189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ---P---DWVAIAFSTKLQILRV  253 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~~~~~~~~~~i~vw~l  253 (253)
                      ++|+++....|.||-.........    ......+...|.+|+|-++.   .   .+++++-.|.+-+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~----~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFY----HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccc----cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            899999999999987766432210    01123367788899997764   1   4557888898888764

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.20  E-value=5.3  Score=34.79  Aligned_cols=52  Identities=19%  Similarity=0.360  Sum_probs=39.0

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCC
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKE  117 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  117 (253)
                      -.|+|++.. |+.+..+.-..+++-.+.|++...|+....+|++++|++....
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~  115 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF  115 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence            458888875 5555544433447888999977788888999999999997654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.91  E-value=4.5  Score=33.13  Aligned_cols=148  Identities=11%  Similarity=0.143  Sum_probs=87.5

Q ss_pred             CCCCEEEEEeCCCeEEEEeccCce-----eeeeeecccccEEEEEec-----CCCeEEEEeCCCcEEEEEcCCCC-----
Q 035558           53 AEPRRIGTSSIDTTCTIWDIEREA-----VDTQLIAHDKEVYDIAWG-----GVGVFASVSADGSVRVFDLRDKE-----  117 (253)
Q Consensus        53 ~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~-----  117 (253)
                      .+...|+.|+.+|.++||+.....     .+... .-..+|..++.-     .....++.-.-..+.+|.+....     
T Consensus        35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CCccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence            356789999999999999986543     11111 245688877653     23333344556778888874322     


Q ss_pred             ----CeeeeeccCCCCCCeeEEEeeCC---C-CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCe
Q 035558          118 ----HSTIIYESSEPDTPLVRLGWNKQ---D-PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCH  189 (253)
Q Consensus       118 ----~~~~~~~~~~~~~~i~~~~~~~~---~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  189 (253)
                          ....++...-.. ....+..-|.   . ..+|.+=+.||. +.+|+-+.... ...+.. ---..-+.|.|.-+ .
T Consensus       114 g~~~~L~~~yeh~l~~-~a~nm~~G~Fgg~~~~~~IcVQS~DG~-L~~feqe~~~f-~~~lp~-~llPgPl~Y~~~tD-s  188 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQR-TAYNMCCGPFGGVKGRDFICVQSMDGS-LSFFEQESFAF-SRFLPD-FLLPGPLCYCPRTD-S  188 (418)
T ss_pred             CcEEEEEEEEEEeccc-ceeEEEEEECCCCCCceEEEEEecCce-EEEEeCCcEEE-EEEcCC-CCCCcCeEEeecCC-E
Confidence                112222222211 3333333222   2 467778888998 99999765321 112221 12223468888874 8


Q ss_pred             EEEecCCCcEEEEeccC
Q 035558          190 ICTAGDDSQALIWDLSS  206 (253)
Q Consensus       190 l~~~~~dg~i~iwd~~~  206 (253)
                      |++++.+..+..|....
T Consensus       189 fvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  189 FVTASSSWTLECYKYQD  205 (418)
T ss_pred             EEEecCceeEEEecHHH
Confidence            99999999999987643

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.54  E-value=3.9  Score=34.11  Aligned_cols=26  Identities=4%  Similarity=-0.059  Sum_probs=18.7

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEE
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIW   70 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vw   70 (253)
                      .|..+..+ +.|..++-.+.+|.+.++
T Consensus       105 eV~~vl~s-~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLS-PTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEec-CCCceEEEecCCeeEEEE
Confidence            45566677 788888888888866544

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.45  E-value=4  Score=31.44  Aligned_cols=112  Identities=15%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe------CCCeEEEEeccCceeeeeeec----
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS------IDTTCTIWDIEREAVDTQLIA----   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~----   83 (253)
                      .|.+||....    +-...-.+-.     +.|+++.|. .+.++++.|.      ....+..||+.+..-. .+.+    
T Consensus        17 ~lC~yd~~~~----qW~~~g~~i~-----G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~   85 (281)
T PF12768_consen   17 GLCLYDTDNS----QWSSPGNGIS-----GTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSN   85 (281)
T ss_pred             EEEEEECCCC----EeecCCCCce-----EEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccc
Confidence            8999999884    3222222333     789999997 6667777664      3457888998866522 2222    


Q ss_pred             -ccccEEEEEec--CCC-eEEEEe-CCCc--EEEEEcCCCCCeeeeec-cCCCCCCeeEEEeeC
Q 035558           84 -HDKEVYDIAWG--GVG-VFASVS-ADGS--VRVFDLRDKEHSTIIYE-SSEPDTPLVRLGWNK  139 (253)
Q Consensus        84 -~~~~v~~~~~~--~~~-~l~~~~-~dg~--i~i~d~~~~~~~~~~~~-~~~~~~~i~~~~~~~  139 (253)
                       -.++|..+.+.  +.. ..+.|. .+|.  |..||=.+-.   .+.. .......|..+.+-|
T Consensus        86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~---~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS---SIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE---eccccccCCCCEEEEEEEEe
Confidence             34788888886  444 444443 3343  5555433322   2221 122233566665544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.34  E-value=6.4  Score=33.50  Aligned_cols=53  Identities=11%  Similarity=0.151  Sum_probs=36.6

Q ss_pred             eEEEEeccCceeeeeeecccccEEE---------EEec-CCC---eEEEEeCCCcEEEEEcCCCCC
Q 035558           66 TCTIWDIEREAVDTQLIAHDKEVYD---------IAWG-GVG---VFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        66 ~i~vwd~~~~~~~~~~~~~~~~v~~---------~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      .|.-.|+++++....++.....+++         +... +++   .++.+..+|.+.+.|-++++.
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            5777789999987777642222221         2222 444   788999999999999998874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.33  E-value=0.75  Score=23.09  Aligned_cols=30  Identities=17%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             cccceeEEEEecCCCCeEEEecCC--CcEEEE
Q 035558          173 HQASVNAIAWAPHSSCHICTAGDD--SQALIW  202 (253)
Q Consensus       173 ~~~~i~~~~~~~~~~~~l~~~~~d--g~i~iw  202 (253)
                      ....-....|+|||..+++++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567789999996455566666  776666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.05  E-value=7.9  Score=36.00  Aligned_cols=143  Identities=11%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             ceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCC--------CEEEEEeCCCeEEEEeccCce-
Q 035558            6 DLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEP--------RRIGTSSIDTTCTIWDIEREA-   76 (253)
Q Consensus         6 ~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~vwd~~~~~-   76 (253)
                      +.=+|-++.+.+|+++++    .....+.+-.     ..|..+..-.|..        .+|+.++ --.|.++-+.-.+ 
T Consensus        92 RaWiTiDn~L~lWny~~~----~e~~~~d~~s-----htIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~  161 (1311)
T KOG1900|consen   92 RAWITIDNNLFLWNYESD----NELAEYDGLS-----HTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEF  161 (1311)
T ss_pred             ceEEEeCCeEEEEEcCCC----Cccccccchh-----hhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccc
Confidence            333444449999999986    4444555544     4566665432332        2344443 3456665443221 


Q ss_pred             ------ee--eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC--CCC------C-------------eeeeeccC
Q 035558           77 ------VD--TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR--DKE------H-------------STIIYESS  126 (253)
Q Consensus        77 ------~~--~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~------~-------------~~~~~~~~  126 (253)
                            ..  ..+......|.++... +|+.|.+|- ||  .+|.+.  ...      +             ...+....
T Consensus       162 ~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~  238 (1311)
T KOG1900|consen  162 TGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP  238 (1311)
T ss_pred             cCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence                  11  1122234578888866 777777655 55  455442  110      0             00111122


Q ss_pred             -CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558          127 -EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP  163 (253)
Q Consensus       127 -~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  163 (253)
                       .+..+|..+.... ..+.+.+-+..+. |.+||+...
T Consensus       239 ~~~~dpI~qi~ID~-SR~IlY~lsek~~-v~~Y~i~~~  274 (1311)
T KOG1900|consen  239 GSSKDPIRQITIDN-SRNILYVLSEKGT-VSAYDIGGN  274 (1311)
T ss_pred             CCCCCcceeeEecc-ccceeeeeccCce-EEEEEccCC
Confidence             3455899999987 7788888888888 999999874

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.98  E-value=0.023  Score=45.88  Aligned_cols=139  Identities=13%  Similarity=0.188  Sum_probs=90.5

Q ss_pred             EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE-EEEeCCCeEEEEECCCCCCCe
Q 035558           90 DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA-TIIMDSAKVVVLDIRFPTLPV  167 (253)
Q Consensus        90 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~~i~~~d~~~~~~~~  167 (253)
                      ...|- .+.-++.++.+-.+..||-....    +.. ....+....++|+. ++..++ .+...+. +.+||+.+.....
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~----~le-~n~tg~aldm~wDk-egdvlavlAek~~p-iylwd~n~eytqq  111 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQV----ILE-LNPTGKALDMAWDK-EGDVLAVLAEKTGP-IYLWDVNSEYTQQ  111 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcce----ecc-cCCchhHhhhhhcc-ccchhhhhhhcCCC-eeechhhhhhHHH
Confidence            34455 45558888888888888866543    211 12333666788888 555544 4455566 9999998754211


Q ss_pred             eeec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558          168 VELQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST  246 (253)
Q Consensus       168 ~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  246 (253)
                      ..+. .|....  +.|++-. ..++.+...|.+.|++........       ..-.|..+++.++|.+.+. .+.++.|.
T Consensus       112 LE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~ii-------v~Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  112 LESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRRII-------VMGKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             HhccCcchHHH--HhhccCC-ccccccccccceEEEeccchhhhh-------hhcccccceeEEEecccce-eeecCcHH
Confidence            2222 233333  7899988 488999999999999988765432       3344899999999999875 44444443

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.95  E-value=8.8  Score=34.29  Aligned_cols=192  Identities=12%  Similarity=0.061  Sum_probs=104.9

Q ss_pred             EEEEEeCCCeEEEEeccCceeeee--------eecccccEEE--EEec-CCCeEEEEeCC---CcEEEEEcCCCC-----
Q 035558           57 RIGTSSIDTTCTIWDIEREAVDTQ--------LIAHDKEVYD--IAWG-GVGVFASVSAD---GSVRVFDLRDKE-----  117 (253)
Q Consensus        57 ~l~~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~--~~~~-~~~~l~~~~~d---g~i~i~d~~~~~-----  117 (253)
                      -+++-..+|.+++|-.+.......        +......|+.  +++. +++.++.+..+   +.|++|.+.-.-     
T Consensus        64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~  143 (753)
T PF11635_consen   64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ  143 (753)
T ss_pred             EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence            355567889999997743221111        1112344554  4544 56555555544   788887653110     


Q ss_pred             ---C---eeeeec----c--C--C-----------CCCCeeEEEeeC----C--CCCEEEEEE-eC--CCeEEEEECCCC
Q 035558          118 ---H---STIIYE----S--S--E-----------PDTPLVRLGWNK----Q--DPRYMATII-MD--SAKVVVLDIRFP  163 (253)
Q Consensus       118 ---~---~~~~~~----~--~--~-----------~~~~i~~~~~~~----~--~~~~l~~~~-~~--~~~i~~~d~~~~  163 (253)
                         .   +.....    .  .  .           .-..++.+.|-+    .  ....+++.+ .+  ++.|.-|.++..
T Consensus       144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~  223 (753)
T PF11635_consen  144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE  223 (753)
T ss_pred             cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence               0   111100    0  0  0           113666777765    2  233444443 33  445899988764


Q ss_pred             CCCeeeec-------------------------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC----C
Q 035558          164 TLPVVELQ-------------------------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG----G  214 (253)
Q Consensus       164 ~~~~~~~~-------------------------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~  214 (253)
                      ...++...                         ...+.|.+++...-+ .+++..-.||+|.++|..+.+.....    .
T Consensus       224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~  302 (753)
T PF11635_consen  224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGE  302 (753)
T ss_pred             CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence            43222211                         012456677766666 58899999999999999887543311    0


Q ss_pred             CC--------CeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558          215 LD--------PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ  249 (253)
Q Consensus       215 ~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~  249 (253)
                      ..        .-..+....++.-++|||.+-.++....++.+.
T Consensus       303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence            00        011122233555689999998888888888754

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.89  E-value=6  Score=32.25  Aligned_cols=148  Identities=10%  Similarity=0.120  Sum_probs=72.8

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee--e
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST--I  121 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~--~  121 (253)
                      ...+..+ +++.+++.+.....++-||-....-...-......+..+.+. ++..++++ .+|.+.. ....++...  .
T Consensus       241 f~~v~~~-~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~  317 (398)
T PLN00033        241 FSTVNRS-PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD  317 (398)
T ss_pred             eeeEEEc-CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence            3444555 566666665433222334432110011111234568889998 77777655 5565443 233332110  1


Q ss_pred             eeccC--CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee---cccccceeEEEEecCCCCeEEEecCC
Q 035558          122 IYESS--EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL---QRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       122 ~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      +....  .....+..+.|.+ ++..+++ +..|. +..- ...++. -...   ..-...++.+.|.+++  ..+..+.+
T Consensus       318 f~~~~~~~~~~~l~~v~~~~-d~~~~a~-G~~G~-v~~s-~D~G~t-W~~~~~~~~~~~~ly~v~f~~~~--~g~~~G~~  390 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRS-KKEAWAA-GGSGI-LLRS-TDGGKS-WKRDKGADNIAANLYSVKFFDDK--KGFVLGND  390 (398)
T ss_pred             eeecccCCCCcceEEEEEcC-CCcEEEE-ECCCc-EEEe-CCCCcc-eeEccccCCCCcceeEEEEcCCC--ceEEEeCC
Confidence            11111  1223588898886 6665555 45554 3333 332221 1221   2224568899998776  35555667


Q ss_pred             CcEEEE
Q 035558          197 SQALIW  202 (253)
Q Consensus       197 g~i~iw  202 (253)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            877654

>PRK10115 protease 2; Provisional

Probab=91.48  E-value=9.5  Score=33.70  Aligned_cols=114  Identities=11%  Similarity=0.166  Sum_probs=64.3

Q ss_pred             CCeeEEEecCCCCCEEEEEeC-CC----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC------CcEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSI-DT----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD------GSVRV  110 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------g~i~i  110 (253)
                      -.+..+.|+ +++++|+.+.. +|    .|++.|+.+++.+........  ..++|. +++.|+....+      ..|..
T Consensus       127 ~~l~~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            346778898 78888776532 22    688999988764322211111  458999 77766554432      35778


Q ss_pred             EEcCCCC-CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECC
Q 035558          111 FDLRDKE-HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIR  161 (253)
Q Consensus       111 ~d~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~  161 (253)
                      +++.++. ....+......  ...-..+.+.++.+++..+..+  ..+.+++..
T Consensus       204 h~lgt~~~~d~lv~~e~~~--~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDD--TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EECCCChhHCeEEEeeCCC--CEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            8888773 12233332221  2222233343666655544433  248888854

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.38  E-value=7.1  Score=32.08  Aligned_cols=151  Identities=11%  Similarity=0.014  Sum_probs=76.8

Q ss_pred             EEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee--eeccCC-CCCCee-EEEeeCCCCCEEEEEEeCCCeEE-EEECCCC
Q 035558           90 DIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI--IYESSE-PDTPLV-RLGWNKQDPRYMATIIMDSAKVV-VLDIRFP  163 (253)
Q Consensus        90 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~-~~~~i~-~~~~~~~~~~~l~~~~~~~~~i~-~~d~~~~  163 (253)
                      .+-.. +++.+..-+. ..+.++++.+......  ....++ ....|+ ++..-. .+.-+.+++.||. |. .+|.+..
T Consensus       225 qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~-vsQWFdvr~~  301 (733)
T COG4590         225 QLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGL-VSQWFDVRRD  301 (733)
T ss_pred             hhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCc-eeeeeeeecC
Confidence            33444 5665555443 5677777765532111  111011 001122 112122 5667788888998 55 4577765


Q ss_pred             CCCe----eeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          164 TLPV----VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       164 ~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ..+.    ..++-...++..+.-..+. +-+++-+..|++.++.....+..        ....--..+.-+++||.+.++
T Consensus       302 ~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~l--------L~~~~~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         302 GQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLL--------LFERAYQAPQLVAMSPNQAYL  372 (733)
T ss_pred             CCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeecccCcce--------ehhhhhcCcceeeeCcccchh
Confidence            4331    1111122333333322232 46778888899988866553321        222223356678899998755


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++ -..+.++++.+
T Consensus       373 l~-e~~gki~~~~l  385 (733)
T COG4590         373 LS-EDQGKIRLAQL  385 (733)
T ss_pred             ee-ecCCceEEEEe
Confidence            53 44556776653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.32  E-value=2.6  Score=34.39  Aligned_cols=151  Identities=13%  Similarity=0.156  Sum_probs=83.9

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCee-EEEecCCCCCEEEEEeCCCeEEEE-eccCce---
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT-SFDWNEAEPRRIGTSSIDTTCTIW-DIEREA---   76 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vw-d~~~~~---   76 (253)
                      ++++.|..-++ .+.++++.+.  ..+..+....... +....|+ .+..- ..+..++.++.||.|.-| |++.+.   
T Consensus       230 Pdg~~LYv~~g~~~~v~~L~~r--~l~~rkl~~dspg-~~~~~Vte~l~lL-~Gg~SLLv~~~dG~vsQWFdvr~~~~p~  305 (733)
T COG4590         230 PDGKTLYVRTGSELVVALLDKR--SLQIRKLVDDSPG-DSRHQVTEQLYLL-SGGFSLLVVHEDGLVSQWFDVRRDGQPH  305 (733)
T ss_pred             CCCCEEEEecCCeEEEEeeccc--ccchhhhhhcCCC-chHHHHHHHHHHH-hCceeEEEEcCCCceeeeeeeecCCCCc
Confidence            45666666555 8888888773  1222222222110 0001222 22222 356668888999999877 443321   


Q ss_pred             --eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           77 --VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        77 --~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                        .++.++-...++..+.-. +.+-+++-...|++..+.....+.  .+... ..+ .+..++++| .++++++-  +++
T Consensus       306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~--lL~~~-~~~-~~~~~~~Sp-~~~~Ll~e--~~g  378 (733)
T COG4590         306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL--LLFER-AYQ-APQLVAMSP-NQAYLLSE--DQG  378 (733)
T ss_pred             ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc--eehhh-hhc-CcceeeeCc-ccchheee--cCC
Confidence              222333223445544444 566788888999999886655542  12111 111 566789999 77777753  333


Q ss_pred             eEEEEECCCCC
Q 035558          154 KVVVLDIRFPT  164 (253)
Q Consensus       154 ~i~~~d~~~~~  164 (253)
                      .++++.+.+..
T Consensus       379 ki~~~~l~Nr~  389 (733)
T COG4590         379 KIRLAQLENRN  389 (733)
T ss_pred             ceEEEEecCCC
Confidence            39999887643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.79  E-value=7.5  Score=31.33  Aligned_cols=187  Identities=14%  Similarity=0.107  Sum_probs=98.1

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec---CCCCCE--EEEEe-CC---CeEEEEeccC
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN---EAEPRR--IGTSS-ID---TTCTIWDIER   74 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~--l~~~~-~d---g~i~vwd~~~   74 (253)
                      .++++.. + -+.+||++.     +.++.+..       +.++.+..-   +-+++.  |+.++ .+   ..|++|.+..
T Consensus        69 SlIigTdK~~GL~VYdL~G-----k~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~  136 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDG-----KELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP  136 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS------EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred             ceEEEEeCCCCEEEEcCCC-----cEEEeecC-------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence            3444444 4 999999998     44555532       223332221   012332  34443 32   4699997753


Q ss_pred             --ceeeeeee-------cccccEEEEEec----CCC-eEEEEeCCCcEEEEEcCCCCC--e--eeeeccCCCCCCeeEEE
Q 035558           75 --EAVDTQLI-------AHDKEVYDIAWG----GVG-VFASVSADGSVRVFDLRDKEH--S--TIIYESSEPDTPLVRLG  136 (253)
Q Consensus        75 --~~~~~~~~-------~~~~~v~~~~~~----~~~-~l~~~~~dg~i~i~d~~~~~~--~--~~~~~~~~~~~~i~~~~  136 (253)
                        +. +..+.       .....+..+|+-    ++. +.+....+|.+..|.+.....  +  ..+..... .+.+..|.
T Consensus       137 ~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCV  214 (381)
T PF02333_consen  137 DTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCV  214 (381)
T ss_dssp             TTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred             CCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEE
Confidence              32 22221       112346777764    333 566677899999998863221  1  12222222 23778888


Q ss_pred             eeCCCCCEEEEEEeCCCeEEEEECCCCCCC----eeeecc--cccceeEEEEe--cCCCCeEEE-ecCCCcEEEEeccCC
Q 035558          137 WNKQDPRYMATIIMDSAKVVVLDIRFPTLP----VVELQR--HQASVNAIAWA--PHSSCHICT-AGDDSQALIWDLSSM  207 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~--~~~~i~~~~~~--~~~~~~l~~-~~~dg~i~iwd~~~~  207 (253)
                      ... ....|..+-.+-+ |.-|+.+-....    +....+  ....|-.|++-  +++..||+. .-.+++..||+.+..
T Consensus       215 VDD-e~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  215 VDD-ETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EET-TTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             Eec-ccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            887 6678888888877 888888643211    111211  23466777764  343235554 446889999998864


Q ss_pred             C
Q 035558          208 G  208 (253)
Q Consensus       208 ~  208 (253)
                      .
T Consensus       293 ~  293 (381)
T PF02333_consen  293 N  293 (381)
T ss_dssp             -
T ss_pred             C
Confidence            3

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.70  E-value=0.14  Score=44.81  Aligned_cols=136  Identities=13%  Similarity=0.109  Sum_probs=73.4

Q ss_pred             CeEEEEeccCcee-eeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCC--CCCe--eeeeccCCCCCCeeEEEe
Q 035558           65 TTCTIWDIEREAV-DTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRD--KEHS--TIIYESSEPDTPLVRLGW  137 (253)
Q Consensus        65 g~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~--~~~~--~~~~~~~~~~~~i~~~~~  137 (253)
                      +.+++-+.++... ...+++..+.+-.+.|-  +...+.  -.-|.+.+||+..  ++..  ..+.........+.-+.|
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w  188 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW  188 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence            4466655543321 12345667788888886  333333  3446788998864  2211  111111122224455666


Q ss_pred             eCC--CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEE-----------EecCCCCeEEEecCCCcEEEEec
Q 035558          138 NKQ--DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIA-----------WAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       138 ~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                      .|.  +.-++-.+-.++. +++.......  ...+..|...+..++           .+||| +.++.++.||.+++|.+
T Consensus       189 cp~~~~~~~ic~~~~~~~-i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  189 CPIAVNKVYICYGLKGGE-IRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             cccccccceeeeccCCCc-eeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeee
Confidence            653  2233333333444 7776665432  234445655444433           57888 68899999999988876


Q ss_pred             cC
Q 035558          205 SS  206 (253)
Q Consensus       205 ~~  206 (253)
                      .-
T Consensus       265 yi  266 (1283)
T KOG1916|consen  265 YI  266 (1283)
T ss_pred             ee
Confidence            53

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.64  E-value=1.8  Score=36.94  Aligned_cols=67  Identities=13%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             CCCEEEEEEeCCCeEEEEECCC---CCCCeeee--c--------------------ccccceeEEEEec----CCCCeEE
Q 035558          141 DPRYMATIIMDSAKVVVLDIRF---PTLPVVEL--Q--------------------RHQASVNAIAWAP----HSSCHIC  191 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~--~--------------------~~~~~i~~~~~~~----~~~~~l~  191 (253)
                      +...++++..||+ +.......   ........  .                    ........++.++    +. .+|+
T Consensus       157 ~~~~l~v~~~dG~-ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  234 (547)
T PF11715_consen  157 SEANLVVSLQDGG-LLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF  234 (547)
T ss_dssp             SSSBEEEEESSS--EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred             CCCEEEEEECCCC-eEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence            5678888888998 77666654   11101100  0                    0112345555555    44 5999


Q ss_pred             EecCCCcEEEEeccCCCC
Q 035558          192 TAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       192 ~~~~dg~i~iwd~~~~~~  209 (253)
                      +.+.|+++|+||+.++..
T Consensus       235 tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  235 TLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EEETTSEEEEEETTTTCE
T ss_pred             EEeCCCeEEEEECCCCeE
Confidence            999999999999999876

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.59  E-value=4.3  Score=28.70  Aligned_cols=27  Identities=15%  Similarity=0.290  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCC-----C-ceEEEEcCCcEEEEE
Q 035558          226 EIEQLQWSSSQ-----P-DWVAIAFSTKLQILR  252 (253)
Q Consensus       226 ~v~~~~~~~~~-----~-~~~~~~~~~~i~vw~  252 (253)
                      .+.+++|||.|     + .|++...++.+.||.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            78999999954     2 355678889999885

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.54  E-value=7.2  Score=30.68  Aligned_cols=108  Identities=4%  Similarity=-0.103  Sum_probs=53.0

Q ss_pred             CCCEEEEEeCCC-----eEEEEeccCcee---eeeeecccccE--EEEEecCCCeEEEEeC-----CCcEEEEEcCCCCC
Q 035558           54 EPRRIGTSSIDT-----TCTIWDIEREAV---DTQLIAHDKEV--YDIAWGGVGVFASVSA-----DGSVRVFDLRDKEH  118 (253)
Q Consensus        54 ~~~~l~~~~~dg-----~i~vwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~  118 (253)
                      ++.+++.|+.++     .+..+|+.+.+-   ...+..-..+.  .+++..++.+++.|+.     ...+..||+.+.+-
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            356667776543     566677765542   11111111111  1222226677777764     23588888887652


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC---eEEEEECCCCC
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA---KVVVLDIRFPT  164 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~  164 (253)
                      . .+....... .....+... ++.+.+.|+.++.   .+..||.++.+
T Consensus       152 ~-~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       152 F-ELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             e-ECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence            2 221111111 111122222 5677777776542   25688887644

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.35  E-value=8.3  Score=31.10  Aligned_cols=197  Identities=13%  Similarity=0.063  Sum_probs=99.1

Q ss_pred             EEEecC--CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEE--EEEec---CCCe--EEEEe-CC---CcEEEEEc
Q 035558           47 SFDWNE--AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVY--DIAWG---GVGV--FASVS-AD---GSVRVFDL  113 (253)
Q Consensus        47 ~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~---~~~~--l~~~~-~d---g~i~i~d~  113 (253)
                      +|-.+|  |..++++....++-+.+||++ |+.++.+..  +.++  ++.+.   .++.  |+.++ .+   .+|++|.+
T Consensus        58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i  134 (381)
T PF02333_consen   58 AIWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI  134 (381)
T ss_dssp             EEE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred             cEecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence            454554  445678888888999999997 566666642  2333  33322   3332  34443 32   46999988


Q ss_pred             CCCCC-eeeeeccC----CCCCCeeEEEe--eCCCCCEEEE-EEeCCCeEEEEECCCCC------CCeeeecccccceeE
Q 035558          114 RDKEH-STIIYESS----EPDTPLVRLGW--NKQDPRYMAT-IIMDSAKVVVLDIRFPT------LPVVELQRHQASVNA  179 (253)
Q Consensus       114 ~~~~~-~~~~~~~~----~~~~~i~~~~~--~~~~~~~l~~-~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~i~~  179 (253)
                      ..... ...+....    .....++.+++  +|.++.+.+. ...+|. +..|-+....      ..++++.. ...+-.
T Consensus       135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~-~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EG  212 (381)
T PF02333_consen  135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGR-VEQYELTDDGDGKVSATLVREFKV-GSQPEG  212 (381)
T ss_dssp             ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSE-EEEEEEEE-TTSSEEEEEEEEEE--SS-EEE
T ss_pred             cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCce-EEEEEEEeCCCCcEeeEEEEEecC-CCcceE
Confidence            64321 11111100    11124667776  4445655554 444554 8777765322      12445543 346778


Q ss_pred             EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec---cCCCceeEEEEc--CCCC-ceEEEE-cCCcEEEEE
Q 035558          180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY---TAGAEIEQLQWS--SSQP-DWVAIA-FSTKLQILR  252 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--~~~~-~~~~~~-~~~~i~vw~  252 (253)
                      +...... ..|+.+-++--|.-|+.+......   .......   .....|-.|+.-  +++. +|++++ .++...||+
T Consensus       213 CVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~---~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  213 CVVDDET-GRLYVGEEDVGIWRYDAEPEGGND---RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             EEEETTT-TEEEEEETTTEEEEEESSCCC-S-----EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred             EEEeccc-CCEEEecCccEEEEEecCCCCCCc---ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence            8888877 489999999877777776433221   0011111   134567777763  3443 555544 455677775

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.21  E-value=4.1  Score=27.32  Aligned_cols=106  Identities=11%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             Eec-CCCeEEEEeCCCcEEEEEcCCCCC--------eeeeeccCCCCCCeeEEE---eeCC-CCCEEEEEEeCCCeEEEE
Q 035558           92 AWG-GVGVFASVSADGSVRVFDLRDKEH--------STIIYESSEPDTPLVRLG---WNKQ-DPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        92 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~i~~~~---~~~~-~~~~l~~~~~~~~~i~~~  158 (253)
                      .|. ....|+.++.-|+|.+++......        ...+    .....|++++   |.|. +...|+.|+.. . +..|
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L----Nin~~italaaG~l~~~~~~D~LliGt~t-~-llaY   78 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL----NINQEITALAAGRLKPDDGRDCLLIGTQT-S-LLAY   78 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE----ECCCceEEEEEEecCCCCCcCEEEEeccc-e-EEEE
Confidence            455 455788888889999998764431        1111    1222566664   4432 34566666554 4 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecC---CCCeEEEecCCCcEEEEeccC
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPH---SSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      |...... +. .+.-...++++.+-.-   ...++++|+ +..|.-||.+.
T Consensus        79 DV~~N~d-~F-yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G  126 (136)
T PF14781_consen   79 DVENNSD-LF-YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG  126 (136)
T ss_pred             EcccCch-hh-hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence            9987664 22 2223456777766431   112444444 56677666554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.74  E-value=7.3  Score=29.52  Aligned_cols=152  Identities=14%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             CeeEEEecCCCCCEEEEEe---CCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEE-cCCCCC
Q 035558           44 PLTSFDWNEAEPRRIGTSS---IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFD-LRDKEH  118 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~~~  118 (253)
                      .+.+.+++ ++++.++...   ....++++...  ....... ....+..-.|. ++...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS-~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVS-PDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEEC-CCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            67889999 7888776655   33355555443  2222221 22367777888 877776666666666664 233332


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC--CCeEEEEECCCCC--------CCeeeecccccceeEEEEecCCCC
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMD--SAKVVVLDIRFPT--------LPVVELQRHQASVNAIAWAPHSSC  188 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~~i~~~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~  188 (253)
                      .............|..+.++| ++..++....+  +..|.+--+....        .+..........+..+.|.+++ .
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~  178 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-T  178 (253)
T ss_pred             eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-E
Confidence            222222222222899999999 88877766532  2236655432111        1122222334678999999998 4


Q ss_pred             eEEEecC-CCcEEE
Q 035558          189 HICTAGD-DSQALI  201 (253)
Q Consensus       189 ~l~~~~~-dg~i~i  201 (253)
                      +++.+.. ++.+..
T Consensus       179 L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  179 LVVLGRSAGGPVVR  192 (253)
T ss_pred             EEEEeCCCCCceeE
Confidence            6555543 443444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=89.61  E-value=9.1  Score=30.44  Aligned_cols=52  Identities=4%  Similarity=-0.033  Sum_probs=26.3

Q ss_pred             CCCEEEEEeCC-----------CeEEEEeccCceeeeeeecccc---cEEEEEecCCCeEEEEeCC
Q 035558           54 EPRRIGTSSID-----------TTCTIWDIEREAVDTQLIAHDK---EVYDIAWGGVGVFASVSAD  105 (253)
Q Consensus        54 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~~~~~d  105 (253)
                      ++.+.+.|+.+           ..+..||..+.+-.........   ....+...++.+.+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            46777777753           2467788876652221101111   1111212277788887764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.39  E-value=3.8  Score=28.98  Aligned_cols=31  Identities=16%  Similarity=0.478  Sum_probs=25.8

Q ss_pred             ceeEEEEecCC-----CCeEEEecCCCcEEEEeccC
Q 035558          176 SVNAIAWAPHS-----SCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       176 ~i~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~  206 (253)
                      .+.+++|+|.|     ..+|++...++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999943     23889999999999998774

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN02193 nitrile-specifier protein

Probab=89.08  E-value=12  Score=31.28  Aligned_cols=150  Identities=11%  Similarity=-0.002  Sum_probs=70.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCceeee--eeecccccE--EEEEecCCCeEEEEeCCC-----cEEEEEcCCCCCe
Q 035558           54 EPRRIGTSSID-----TTCTIWDIEREAVDT--QLIAHDKEV--YDIAWGGVGVFASVSADG-----SVRVFDLRDKEHS  119 (253)
Q Consensus        54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v--~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  119 (253)
                      ++.+++.|+.+     ..+.++|+.+.+-..  .+.....+.  .+++..++.+++.|+.++     .+..||+.+.+-.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            45666667654     357788887765222  111001111  122222667777777543     3677887765421


Q ss_pred             eeeec--cCCCCCCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCCC-Ceeeec--ccccceeEEEEecCCCCeEE
Q 035558          120 TIIYE--SSEPDTPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPTL-PVVELQ--RHQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       120 ~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~~-~~~~~~--~~~~~i~~~~~~~~~~~~l~  191 (253)
                      .....  ....... ..++..  ++++++.++.++   ..+.+||+.+.+- .+....  .......+++. -++ ++++
T Consensus       308 ~~~~~~~~~~~R~~-~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~-~iyv  382 (470)
T PLN02193        308 HCSTPGDSFSIRGG-AGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGK-HIVI  382 (470)
T ss_pred             eCCCCCCCCCCCCC-cEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECC-EEEE
Confidence            11100  0011111 122222  566777776543   2389999887541 111110  00111122222 233 5777


Q ss_pred             EecCC--------------CcEEEEeccCCC
Q 035558          192 TAGDD--------------SQALIWDLSSMG  208 (253)
Q Consensus       192 ~~~~d--------------g~i~iwd~~~~~  208 (253)
                      .|+.+              ..+.+||+.+..
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcCE
Confidence            77753              247888887654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.07  E-value=8  Score=29.09  Aligned_cols=137  Identities=13%  Similarity=0.064  Sum_probs=69.8

Q ss_pred             EEEEeccCceeeeeeec-ccccEEEEEec-CCCeEEEEeC-C--CcEEEEEcCCCCCe-eeeec--cCCCCCCeeEEEee
Q 035558           67 CTIWDIEREAVDTQLIA-HDKEVYDIAWG-GVGVFASVSA-D--GSVRVFDLRDKEHS-TIIYE--SSEPDTPLVRLGWN  138 (253)
Q Consensus        67 i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~-d--g~i~i~d~~~~~~~-~~~~~--~~~~~~~i~~~~~~  138 (253)
                      -.+||+.+++... +.. ......+-.+. +|+++.+|+. +  ..+++++....... .....  ......+--+..--
T Consensus        48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            3478888776332 221 11122222344 8889988875 2  34777776541100 01100  01111122333444


Q ss_pred             CCCCCEEEEEEeCCCeEEEEECCCCC-CCee--eecc-----cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          139 KQDPRYMATIIMDSAKVVVLDIRFPT-LPVV--ELQR-----HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       139 ~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~--~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      | +|+.|+.|+.......+|.-+... ....  .+..     ...---.+...|+| ++++.+..+.  .|||..+.+
T Consensus       127 ~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~~~n~  200 (243)
T PF07250_consen  127 P-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDYKTNT  200 (243)
T ss_pred             C-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc--EEEeCCCCe
Confidence            5 899999998887646666653221 1111  1110     01112346678999 6888887654  456777664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.61  E-value=11  Score=30.28  Aligned_cols=98  Identities=7%  Similarity=0.021  Sum_probs=50.0

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----e---eeeeeec----ccccEEEEEec-CCCeEEEEeCC-----
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----A---VDTQLIA----HDKEVYDIAWG-GVGVFASVSAD-----  105 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~---~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~d-----  105 (253)
                      ....+++. +++ +++ +......++.|....     +   .+..+..    +......++|. ++.+.++-+..     
T Consensus        73 ~p~Gi~~~-~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        73 MVTGLAVA-VGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             CccceeEe-cCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            45688887 666 444 444433334354321     1   1122222    13446788888 87766654421     


Q ss_pred             --------------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558          106 --------------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus       106 --------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                                    |.|.-+|..+.+. ..+.  .+. .....++|+| +++++++-.
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a--~G~-rnp~Gl~~d~-~G~l~~tdn  202 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKL-RVVA--HGF-QNPYGHSVDS-WGDVFFCDN  202 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeE-EEEe--cCc-CCCccceECC-CCCEEEEcc
Confidence                          3344444444331 1121  111 2456789999 888876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.93  E-value=14  Score=30.66  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=34.4

Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-Ceeeec-----ccccceeEEEEecCC
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQ-----RHQASVNAIAWAPHS  186 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~  186 (253)
                      ..+.|+|.| ++++|++--..|. |++++...... .+..+.     ........|+++|+-
T Consensus        31 ~Pw~maflP-DG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGP-DNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcC-CCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            567899999 7876665433576 98887654321 121111     135678899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.89  E-value=2.3  Score=21.47  Aligned_cols=30  Identities=13%  Similarity=0.138  Sum_probs=21.4

Q ss_pred             CCCEEEE-EeCCCeEEEEeccCceeeeeeec
Q 035558           54 EPRRIGT-SSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus        54 ~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      ++++|++ ...++.|.++|..+++.+..+..
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4454444 44578999999988887777664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.57  E-value=22  Score=32.35  Aligned_cols=148  Identities=9%  Similarity=0.013  Sum_probs=82.6

Q ss_pred             CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558           54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL  132 (253)
Q Consensus        54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i  132 (253)
                      .++.|+-... ..||+++-.  .....+.. .+.++....+ +...++.++.++.+...++..... .. .....-+..|
T Consensus       460 ~g~~lvQvTs-~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e-~~~~~~e~ev  533 (1096)
T KOG1897|consen  460 NGNQLVQVTS-NSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-RE-VSHKEFEYEV  533 (1096)
T ss_pred             CCceEEEEec-ccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccce-ee-eeeheeccee
Confidence            3444444433 346666654  22333442 3334444444 666777888788787777776651 11 1222334589


Q ss_pred             eEEEeeCC--CCC---EEEEEEeCCCeEEEEECCCCCCCeee-ecc--cccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558          133 VRLGWNKQ--DPR---YMATIIMDSAKVVVLDIRFPTLPVVE-LQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       133 ~~~~~~~~--~~~---~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                      .|+.++|-  +.+   ++++|..+...+.+.-+.......+. +..  -...|.-.++-.+. .+|.++..||.+.-|-+
T Consensus       534 aCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~  612 (1096)
T KOG1897|consen  534 ACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVL  612 (1096)
T ss_pred             EEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEE
Confidence            99999874  333   78888888874444444332221121 111  11234445555555 69999999999987766


Q ss_pred             cCCC
Q 035558          205 SSMG  208 (253)
Q Consensus       205 ~~~~  208 (253)
                      ....
T Consensus       613 d~~t  616 (1096)
T KOG1897|consen  613 DINT  616 (1096)
T ss_pred             Eccc
Confidence            5443

>smart00564 PQQ beta-propeller repeat

Probab=87.15  E-value=1.9  Score=20.48  Aligned_cols=26  Identities=15%  Similarity=0.004  Sum_probs=20.7

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeee
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +..++.++.+|.+..+|.++++.+..
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence            33677788899999999998886654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.05  E-value=14  Score=29.39  Aligned_cols=106  Identities=15%  Similarity=0.241  Sum_probs=53.9

Q ss_pred             cEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec----cCCCCCCeeEEEeeCC--CCCEEEEEEeCC-------
Q 035558           87 EVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE----SSEPDTPLVRLGWNKQ--DPRYMATIIMDS-------  152 (253)
Q Consensus        87 ~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~i~~~~~~~~--~~~~l~~~~~~~-------  152 (253)
                      ..++|+|. +++++++ ...|.|++++ ..+.....+..    ....+.....++++|.  ...+|.+.....       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            45789999 8776665 6699999999 33322112211    2234457899999982  223443333311       


Q ss_pred             -CeEEEEECCCCCC-------Ceeeecc---cccceeEEEEecCCCCeEEEecC
Q 035558          153 -AKVVVLDIRFPTL-------PVVELQR---HQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       153 -~~i~~~d~~~~~~-------~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                       ..|.-|.......       .+..+..   ....-..|.|.|+| .+.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCC
Confidence             1244444433210       0111121   23345679999999 55555543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.72  E-value=23  Score=31.81  Aligned_cols=160  Identities=16%  Similarity=0.229  Sum_probs=93.8

Q ss_pred             CCeeEEEec---C---CCCCEEEEEeCCCeEEEEeccCc---------------eeeeeeec---ccccEEEEEec--CC
Q 035558           43 GPLTSFDWN---E---AEPRRIGTSSIDTTCTIWDIERE---------------AVDTQLIA---HDKEVYDIAWG--GV   96 (253)
Q Consensus        43 ~~v~~~~~~---~---~~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~---~~~~v~~~~~~--~~   96 (253)
                      .+|..|+|.   .   ...++|++-. ...+.|+..+-.               .++..+..   -..+..+++|+  +.
T Consensus        80 ~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~  158 (765)
T PF10214_consen   80 SPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ  158 (765)
T ss_pred             CCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence            789999987   2   1234565544 456777772211               12333331   23467789999  77


Q ss_pred             CeEEEEeCCCcEEEEEcCCCC--CeeeeeccCC----------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC
Q 035558           97 GVFASVSADGSVRVFDLRDKE--HSTIIYESSE----------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT  164 (253)
Q Consensus        97 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  164 (253)
                      ..||.....|...+||+....  ..........          ....-..+.|.+ +.+.|++++...  +.++|+++..
T Consensus       159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r~~--l~~~d~~~~~  235 (765)
T PF10214_consen  159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNRSK--LMLIDFESNW  235 (765)
T ss_pred             ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcCCc--eEEEECCCCC
Confidence            899999999999999992211  1011110000          112334678877 666777766554  9999998765


Q ss_pred             CCe-eeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          165 LPV-VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       165 ~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      ... .........|..+.-+|..+.+++.-. ...|...++...
T Consensus       236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~  278 (765)
T PF10214_consen  236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS  278 (765)
T ss_pred             ccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence            311 122223457888888887433333332 256777777763

These proteins are found in fungi.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=86.35  E-value=29  Score=32.46  Aligned_cols=112  Identities=7%  Similarity=0.002  Sum_probs=64.0

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      ++|..++=-  .| +|+++ ....|.+|+++.. ..+.. .--.-++.-.... -.++++.|.--..|.+.-........
T Consensus      1098 GtVsavceV--~G-~l~~~-~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rl 1172 (1366)
T KOG1896|consen 1098 GTVSAVCEV--RG-HLLSS-QGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRL 1172 (1366)
T ss_pred             cceEEEEEe--cc-EEEEc-cCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEE
Confidence            788877643  44 45554 3468999999544 33221 1122334433444 46677777766777777665443222


Q ss_pred             eeeccCCCCCCeeEEEeeCCCC-CEEEEEEeCCCeEEEEEC
Q 035558          121 IIYESSEPDTPLVRLGWNKQDP-RYMATIIMDSAKVVVLDI  160 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~i~~~d~  160 (253)
                      .+.......-.++++.|--+.+ -.++++..+++ |++|-.
T Consensus      1173 sL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN-i~vy~Y 1212 (1366)
T KOG1896|consen 1173 SLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN-IHVYMY 1212 (1366)
T ss_pred             EEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc-EEEEEe
Confidence            2222222333677888866333 35777778888 888754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=86.16  E-value=15  Score=28.94  Aligned_cols=63  Identities=3%  Similarity=0.013  Sum_probs=35.1

Q ss_pred             CCCEEEEEeC-----CCeEEEEeccCcee--eeeeecccccEEEEEec-CCCeEEEEeCCCc----EEEEEcCCCC
Q 035558           54 EPRRIGTSSI-----DTTCTIWDIEREAV--DTQLIAHDKEVYDIAWG-GVGVFASVSADGS----VRVFDLRDKE  117 (253)
Q Consensus        54 ~~~~l~~~~~-----dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~----i~i~d~~~~~  117 (253)
                      ++.+.+.|+.     ...+..||+.+.+-  +..+... ......+.. ++.+++.|+.++.    +..||.++.+
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            4666677664     23578888876642  2222211 111222223 6778888877643    5678888765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.80  E-value=3.2  Score=20.94  Aligned_cols=30  Identities=17%  Similarity=0.172  Sum_probs=19.1

Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCCCCeeeec
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQ  171 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~  171 (253)
                      +++.++++......|.++|..+... +..+.
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~-~~~i~   31 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKV-IATIP   31 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeE-EEEEE
Confidence            5666666666555599999976542 44443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.51  E-value=25  Score=32.63  Aligned_cols=32  Identities=3%  Similarity=0.089  Sum_probs=25.8

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      ....++|. +...+++.|+..|.|+++-...-+
T Consensus        37 ~~~~~afD-~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   37 TPSALAFD-PTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCcceeec-cccceEEEEEecccEEEecccceE
Confidence            45578888 788999999999999998765433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.43  E-value=16  Score=28.55  Aligned_cols=116  Identities=10%  Similarity=0.086  Sum_probs=68.0

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccC------c-eeeeeeec-----ccccEEEEEec-CCC------------eE
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIER------E-AVDTQLIA-----HDKEVYDIAWG-GVG------------VF   99 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~-~~~~~~~~-----~~~~v~~~~~~-~~~------------~l   99 (253)
                      -..|+++ |.+.+-++....+...+||...      . .++-.+..     .....+.+.|+ ...            .+
T Consensus        25 ~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            4689999 6677777777778999999861      1 12223321     12456777776 322            36


Q ss_pred             EEEeCCCcEEEEEcCCCCC---e-eeeeccCCCCCCe-eEEEeeCC-CCCEEEEEEeCCCeEEEEECCC
Q 035558          100 ASVSADGSVRVFDLRDKEH---S-TIIYESSEPDTPL-VRLGWNKQ-DPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus       100 ~~~~~dg~i~i~d~~~~~~---~-~~~~~~~~~~~~i-~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      +.+++||+|.-|...-...   . ..+... ...+.+ .-+++-.. .+++|..+....+.|.++|-.-
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence            8889999999998543322   1 122211 111223 33555431 3567776666555599998654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.07  E-value=2.6  Score=35.99  Aligned_cols=37  Identities=22%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             CeeEEEecCC----CCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558           44 PLTSFDWNEA----EPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus        44 ~v~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ....++.+ .    +..++++.+.|+.+|+||+.+++++...
T Consensus       216 ~~~~~~~~-~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVS-SSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE------ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEe-cceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            44555665 4    6789999999999999999999885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02153 epithiospecifier protein

Probab=85.02  E-value=18  Score=28.80  Aligned_cols=64  Identities=11%  Similarity=0.123  Sum_probs=33.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCceee--eeeec---cccc-EEEEEecCCCeEEEEeCC-----------CcEEEE
Q 035558           54 EPRRIGTSSID-----TTCTIWDIEREAVD--TQLIA---HDKE-VYDIAWGGVGVFASVSAD-----------GSVRVF  111 (253)
Q Consensus        54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~---~~~~-v~~~~~~~~~~l~~~~~d-----------g~i~i~  111 (253)
                      ++.+++.|+.+     ..+.+||+.+.+-.  ..+..   .... -.+++..++.+++.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            45666777643     25778888765422  22210   0111 112222266777777754           247788


Q ss_pred             EcCCCC
Q 035558          112 DLRDKE  117 (253)
Q Consensus       112 d~~~~~  117 (253)
                      |..+.+
T Consensus       165 d~~~~~  170 (341)
T PLN02153        165 NIADGK  170 (341)
T ss_pred             ECCCCe
Confidence            887764

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.80  E-value=9.6  Score=25.61  Aligned_cols=105  Identities=10%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             EecCCCCCEEEEEeCCCeEEEEeccCce--------eeeeeecccccEEEEEec------CCCeEEEEeCCCcEEEEEcC
Q 035558           49 DWNEAEPRRIGTSSIDTTCTIWDIEREA--------VDTQLIAHDKEVYDIAWG------GVGVFASVSADGSVRVFDLR  114 (253)
Q Consensus        49 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~------~~~~l~~~~~dg~i~i~d~~  114 (253)
                      .|. .....|+.++.-|.|.|++.....        .+..+. -...|++|+-.      ..+.|+.|+. ..+..||+.
T Consensus         5 kfD-G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    5 KFD-GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EeC-CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            444 344567888888999999876432        233333 34567776543      3456777664 469999999


Q ss_pred             CCCCeeeeeccCCCCCCeeEEEee---CCCCCEEEEEEeCCCeEEEEECCC
Q 035558          115 DKEHSTIIYESSEPDTPLVRLGWN---KQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus       115 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      .+..  .+++  .-...+.++.+-   .....++++|+ +.. |.-||...
T Consensus        82 ~N~d--~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGG-ncs-i~Gfd~~G  126 (136)
T PF14781_consen   82 NNSD--LFYK--EVPDGVNAIVIGKLGDIPSPLVIVGG-NCS-IQGFDYEG  126 (136)
T ss_pred             cCch--hhhh--hCccceeEEEEEecCCCCCcEEEECc-eEE-EEEeCCCC
Confidence            8763  2222  112256666552   21234444443 333 66666543

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.71  E-value=3.4  Score=20.63  Aligned_cols=26  Identities=15%  Similarity=0.017  Sum_probs=21.9

Q ss_pred             EEEEEeCCCeEEEEeccCceeeeeee
Q 035558           57 RIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus        57 ~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      .++.++.+|.|+-.|.++|+.+..++
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~   27 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQ   27 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeee
Confidence            45667899999999999999887776

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.29  E-value=21  Score=29.16  Aligned_cols=174  Identities=13%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             cEEEEEccCCccccceee-eecCCCCccccCCeeEEEecCCCCCEEEEEeCCC-----------eEEEEeccCceee--e
Q 035558           14 FLRVWRISDEDRRVELKS-LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT-----------TCTIWDIEREAVD--T   79 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~--~   79 (253)
                      .++++|+.++    +.+. .+....       ...+.|. ++++.|+....+.           .|+.|.+.+....  .
T Consensus       151 ~l~v~Dl~tg----~~l~d~i~~~~-------~~~~~W~-~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~l  218 (414)
T PF02897_consen  151 TLRVFDLETG----KFLPDGIENPK-------FSSVSWS-DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDEL  218 (414)
T ss_dssp             EEEEEETTTT----EEEEEEEEEEE-------SEEEEEC-TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EE
T ss_pred             EEEEEECCCC----cCcCCcccccc-------cceEEEe-CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCee
Confidence            8999999986    4332 222211       2249999 6766655444322           3778887665422  3


Q ss_pred             eeeccccc--EEEEEec-CCCeEEEEeC-C---CcEEEEEcCCC----CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           80 QLIAHDKE--VYDIAWG-GVGVFASVSA-D---GSVRVFDLRDK----EHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        80 ~~~~~~~~--v~~~~~~-~~~~l~~~~~-d---g~i~i~d~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      .+......  ...+..+ ++++++.... .   ..+.+.|+...    .....+...  ..+....+...  .+.+++..
T Consensus       219 vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~--~~~~~~~v~~~--~~~~yi~T  294 (414)
T PF02897_consen  219 VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR--EDGVEYYVDHH--GDRLYILT  294 (414)
T ss_dssp             EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES--SSS-EEEEEEE--TTEEEEEE
T ss_pred             EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC--CCceEEEEEcc--CCEEEEee
Confidence            33333322  5567777 8887665433 2   34788888774    223333321  12233333333  34444433


Q ss_pred             EeCC--CeEEEEECCCCCC--Ceeeeccccc--ceeEEEEecCCCCeEEEecCCC--cEEEEecc
Q 035558          149 IMDS--AKVVVLDIRFPTL--PVVELQRHQA--SVNAIAWAPHSSCHICTAGDDS--QALIWDLS  205 (253)
Q Consensus       149 ~~~~--~~i~~~d~~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg--~i~iwd~~  205 (253)
                      ..+.  ..|...++.....  ....+..+..  .+..+...  +..+++.-..++  .|+++++.
T Consensus       295 n~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  295 NDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             -TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred             CCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence            3221  2366777776552  1224555555  45555444  434555555554  56777777

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.90  E-value=17  Score=27.86  Aligned_cols=156  Identities=12%  Similarity=-0.042  Sum_probs=90.6

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY  123 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  123 (253)
                      -..++-. +++..-+++...+.|--.|..+++....--+.......+..- ++...++-+.. -|.-.|-++.+......
T Consensus        64 p~dvapa-pdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          64 PFDVAPA-PDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             ccccccC-CCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            3455555 667667777777777777888887655444444555666666 66665554333 34444555544333222


Q ss_pred             ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       124 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                      .............|.+ .+++..++.. |- ---.|-.  ...+..+.. .....+.|+..|+|+ .-++.-.+..|...
T Consensus       142 p~~~a~~nlet~vfD~-~G~lWFt~q~-G~-yGrLdPa--~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiari  215 (353)
T COG4257         142 PLEHADANLETAVFDP-WGNLWFTGQI-GA-YGRLDPA--RNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARI  215 (353)
T ss_pred             ccccCCCcccceeeCC-CccEEEeecc-cc-ceecCcc--cCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEc
Confidence            3334445778888998 8888877652 21 0001111  111333322 234567899999995 66666677778777


Q ss_pred             eccCCC
Q 035558          203 DLSSMG  208 (253)
Q Consensus       203 d~~~~~  208 (253)
                      |...+.
T Consensus       216 dp~~~~  221 (353)
T COG4257         216 DPFAGH  221 (353)
T ss_pred             ccccCC
Confidence            776653

>PLN02153 epithiospecifier protein

Probab=83.83  E-value=20  Score=28.48  Aligned_cols=63  Identities=11%  Similarity=0.036  Sum_probs=32.6

Q ss_pred             CCCEEEEEeCC-----------CeEEEEeccCceeee--eee---cccccEEEEEecCCCeEEEEeCC------------
Q 035558           54 EPRRIGTSSID-----------TTCTIWDIEREAVDT--QLI---AHDKEVYDIAWGGVGVFASVSAD------------  105 (253)
Q Consensus        54 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~--~~~---~~~~~v~~~~~~~~~~l~~~~~d------------  105 (253)
                      ++.+++.|+.+           ..+.+||.++.+-..  ...   ...... +++..++++++.++.+            
T Consensus       137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~gG~~~~~  215 (341)
T PLN02153        137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-GFAVVQGKIWVVYGFATSILPGGKSDYE  215 (341)
T ss_pred             CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-eEEEECCeEEEEeccccccccCCcccee
Confidence            45666777653           247788887664221  111   001111 1222256666655432            


Q ss_pred             -CcEEEEEcCCCC
Q 035558          106 -GSVRVFDLRDKE  117 (253)
Q Consensus       106 -g~i~i~d~~~~~  117 (253)
                       ..+.+||+.+.+
T Consensus       216 ~~~v~~yd~~~~~  228 (341)
T PLN02153        216 SNAVQFFDPASGK  228 (341)
T ss_pred             cCceEEEEcCCCc
Confidence             458889988775

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.48  E-value=24  Score=29.09  Aligned_cols=58  Identities=14%  Similarity=0.112  Sum_probs=41.7

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEc
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDL  113 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~  113 (253)
                      ..+++.-+.||.+.+++-+.......+.. ---...+.|. ..+.|++++.+..+.-|..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            47888899999999999876554443432 1122335677 7788999998888888866

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=83.32  E-value=3.3  Score=19.09  Aligned_cols=26  Identities=4%  Similarity=0.067  Sum_probs=20.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWD   71 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd   71 (253)
                      ..|.+++..   ..+++.+...+.+|+|.
T Consensus         2 E~i~aia~g---~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAG---DSWVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEcc---CCEEEEEeCCCeEEecC
Confidence            457888865   67899999889999873

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=82.22  E-value=23  Score=28.08  Aligned_cols=77  Identities=12%  Similarity=0.065  Sum_probs=43.8

Q ss_pred             eeeecccccceeEEEEec-------CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          167 VVELQRHQASVNAIAWAP-------HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       167 ~~~~~~~~~~i~~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      +..+..| ..+..+.|-+       .+ .+|++.-..+.|....+.......   ...........++..+++.|+|..+
T Consensus       246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g-~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~r~~~v~~~pDG~Ly  320 (331)
T PF07995_consen  246 VFAYPPH-SAPTGIIFYRGSAFPEYRG-DLFVADYGGGRIWRLDLDEDGSVT---EEEEFLGGFGGRPRDVAQGPDGALY  320 (331)
T ss_dssp             SEEETTT---EEEEEEE-SSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEE---EEEEECTTSSS-EEEEEEETTSEEE
T ss_pred             ceeecCc-cccCceEEECCccCccccC-cEEEecCCCCEEEEEeeecCCCcc---ceEEccccCCCCceEEEEcCCCeEE
Confidence            3334434 4566677764       23 366666667788888876443221   1111233455689999999999877


Q ss_pred             EEEEcCCcE
Q 035558          240 VAIAFSTKL  248 (253)
Q Consensus       240 ~~~~~~~~i  248 (253)
                      ++...++.|
T Consensus       321 v~~d~~G~i  329 (331)
T PF07995_consen  321 VSDDSDGKI  329 (331)
T ss_dssp             EEE-TTTTE
T ss_pred             EEECCCCeE
Confidence            776666655

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=81.37  E-value=25  Score=27.85  Aligned_cols=162  Identities=14%  Similarity=0.165  Sum_probs=0.0

Q ss_pred             ccEEEEEec-CCCeEEEEeCCCc------EEEEEcCC------CCCeeeeeccCCCCCCee--------EEEeeCCCCCE
Q 035558           86 KEVYDIAWG-GVGVFASVSADGS------VRVFDLRD------KEHSTIIYESSEPDTPLV--------RLGWNKQDPRY  144 (253)
Q Consensus        86 ~~v~~~~~~-~~~~l~~~~~dg~------i~i~d~~~------~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~  144 (253)
                      +.+..|.+. ++..+++.+.+|.      +..+++..      .-............+...        +|++.+ ++.+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCE


Q ss_pred             EEEEEeC------CCeEEEEECCCCCCCeeeecc-------------cccceeEEEEecCCCCeEEEecCCC--------
Q 035558          145 MATIIMD------SAKVVVLDIRFPTLPVVELQR-------------HQASVNAIAWAPHSSCHICTAGDDS--------  197 (253)
Q Consensus       145 l~~~~~~------~~~i~~~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~~dg--------  197 (253)
                      +++.-.+      .. |..++..........+..             .+...-+|+++|+| +.|+++.+..        
T Consensus        99 ~is~E~~~~~~~~p~-I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   99 WISSEGGRTGGIPPR-IRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEeCCccCCCCCCE-EEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCccc


Q ss_pred             --------cEEEEeccCCCCCCCCCCCCeeecc------CCCceeEEEEcCCCCceE-----EEEcCCcEEEEEC
Q 035558          198 --------QALIWDLSSMGQPVEGGLDPILAYT------AGAEIEQLQWSSSQPDWV-----AIAFSTKLQILRV  253 (253)
Q Consensus       198 --------~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~-----~~~~~~~i~vw~l  253 (253)
                              .|..||..+...+.   .+......      ....|..+.+-++++.++     ..+....++|+.+
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~---~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPV---AEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             ccccCceEEEEEecCCCCCccc---eEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=81.12  E-value=32  Score=31.22  Aligned_cols=84  Identities=13%  Similarity=0.121  Sum_probs=57.3

Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE-EEeCC---C-eEEEEECCCCCCCeeeecccccceeEE
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT-IIMDS---A-KVVVLDIRFPTLPVVELQRHQASVNAI  180 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~---~-~i~~~d~~~~~~~~~~~~~~~~~i~~~  180 (253)
                      +.|.+-|........+-.   ....+|.+-+|+| +++.|+- .+.++   . .|++-|+++....+..+.-....|..-
T Consensus       329 ~~L~~~D~dG~n~~~ve~---~~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprw  404 (912)
T TIGR02171       329 GNLAYIDYTKGASRAVEI---EDTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRW  404 (912)
T ss_pred             CeEEEEecCCCCceEEEe---cCCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccce
Confidence            578888887665332201   2234888899999 8888887 55555   2 388999988765456666667788888


Q ss_pred             EEecCCCCeEEEe
Q 035558          181 AWAPHSSCHICTA  193 (253)
Q Consensus       181 ~~~~~~~~~l~~~  193 (253)
                      ...++|+..++-.
T Consensus       405 rv~e~gdt~ivyv  417 (912)
T TIGR02171       405 RVLENGDTVIVYV  417 (912)
T ss_pred             EecCCCCeEEEEE
Confidence            8888887655433

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=80.97  E-value=47  Score=30.73  Aligned_cols=179  Identities=10%  Similarity=0.015  Sum_probs=93.8

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEe-----------CCCeEEEEecc-Cceeeee
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSS-----------IDTTCTIWDIE-REAVDTQ   80 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~vwd~~-~~~~~~~   80 (253)
                      .|++.|...+    +.+..+.... ++-.-.+.++.|+..+.. ++++|.           .+|.++.|++- .++.+.-
T Consensus       854 ~I~~~d~~s~----~~~~~~~l~~-ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel  928 (1205)
T KOG1898|consen  854 SIRVFDPKSG----KIICLVELGQ-NEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL  928 (1205)
T ss_pred             eEEEEcCCCC----ceEEEEeecC-CcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee
Confidence            4777777764    3222222111 111245667777633333 333332           23446666543 2332221


Q ss_pred             ee--cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           81 LI--AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        81 ~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      +.  .-.++|.+++=..+ .+++ +....+++||+..++..+.... ......|..+.+   .+..+++|....+ +.++
T Consensus       929 lh~T~~~~~v~Ai~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~-k~~p~~Is~iqt---~~~RI~VgD~qeS-V~~~ 1001 (1205)
T KOG1898|consen  929 LHKTEIPGPVGAICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCEL-KFIPNRISSIQT---YGARIVVGDIQES-VHFV 1001 (1205)
T ss_pred             eeccCCCccceEEeccCC-EEEE-ecccEEEEeeCChHHHHhhhhh-ccCceEEEEEee---cceEEEEeeccce-EEEE
Confidence            21  12345555544334 3333 4456899999987763322211 122336777776   5677888877666 7766


Q ss_pred             ECCCCCCCeeeeccc--ccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          159 DIRFPTLPVVELQRH--QASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       159 d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      -.+.....+..+...  ...|+++.+-..+  .++.+..=|.+.+-.+..
T Consensus      1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             EEecCCCeEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEECCC
Confidence            655544434444432  2346666665554  688887778887776654

>PLN02193 nitrile-specifier protein

Probab=80.48  E-value=33  Score=28.77  Aligned_cols=107  Identities=7%  Similarity=-0.057  Sum_probs=53.5

Q ss_pred             CCCEEEEEeCCC-----eEEEEeccCceeeeee-----ecccccEEEEEecCCCeEEEEeCC----CcEEEEEcCCCCCe
Q 035558           54 EPRRIGTSSIDT-----TCTIWDIEREAVDTQL-----IAHDKEVYDIAWGGVGVFASVSAD----GSVRVFDLRDKEHS  119 (253)
Q Consensus        54 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~  119 (253)
                      ++.+++.|+.++     .+..||+.+.+-...-     ...... ..++..++.+++.++.+    ..+.+||+.+.+-.
T Consensus       278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~  356 (470)
T PLN02193        278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT  356 (470)
T ss_pred             CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEEECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence            456667776543     4667887765422110     001111 11222266777777755    45889999877532


Q ss_pred             eeeec--cCCCCCCeeEEEeeCCCCCEEEEEEeCC-------------CeEEEEECCCCC
Q 035558          120 TIIYE--SSEPDTPLVRLGWNKQDPRYMATIIMDS-------------AKVVVLDIRFPT  164 (253)
Q Consensus       120 ~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------------~~i~~~d~~~~~  164 (253)
                      .....  .+.......++.+   ++++++.|+...             ..+.+||+.+..
T Consensus       357 ~~~~~g~~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        357 QVETFGVRPSERSVFASAAV---GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             EeccCCCCCCCcceeEEEEE---CCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence            22111  1111111222222   567777777531             127888887653

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=80.36  E-value=29  Score=28.05  Aligned_cols=52  Identities=4%  Similarity=-0.084  Sum_probs=25.7

Q ss_pred             CCCEEEEEeCCC-----------eEEEEeccCceeeeeeecccccE--EEEEe-cCCCeEEEEeCC
Q 035558           54 EPRRIGTSSIDT-----------TCTIWDIEREAVDTQLIAHDKEV--YDIAW-GGVGVFASVSAD  105 (253)
Q Consensus        54 ~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~v--~~~~~-~~~~~l~~~~~d  105 (253)
                      ++.+++.|+.+.           .+..||..+.+-...-.......  .+... .++.+.+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            466777776432           46778887654222111001111  12222 267777777754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-10
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-10
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-10
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-10
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-10
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-10
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		8e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		9e-04

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 50  WNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHDKEVYDIAWGGV--GVFA 100
           WN      + ++S D T  +WDI     E   +D + I   H   V D+AW  +   +F 
Sbjct: 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248
Query: 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160
           SV+ D  + ++D R+   S   +        +  L +N      +AT   D   V + D+
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 307
Query: 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG--QPVEGGLD-- 216
           R   L +   + H+  +  + W+PH+   + ++G D +  +WDLS +G  Q  E   D  
Sbjct: 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367
Query: 217 PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
           P L +  G   A+I    W+ ++P W+  + S
Sbjct: 368 PELLFIHGGHTAKISDFSWNPNEP-WIICSVS 398

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 50  WNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHDKEVYDIAWGGV--GVFA 100
           WN      + ++S D T  +WDI     E   +D + I   H   V D+AW  +   +F 
Sbjct: 191 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 250
Query: 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160
           SV+ D  + ++D R+   S   +        +  L +N      +AT   D   V + D+
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 309
Query: 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG--QPVEGGLD-- 216
           R   L +   + H+  +  + W+PH+   + ++G D +  +WDLS +G  Q  E   D  
Sbjct: 310 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 369
Query: 217 PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
           P L +  G   A+I    W+ ++P W+  + S
Sbjct: 370 PELLFIHGGHTAKISDFSWNPNEP-WIICSVS 400

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 50  WNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHDKEVYDIAWGGV--GVFA 100
           WN      + ++S D T  +WDI     E   +D + I   H   V D+AW  +   +F 
Sbjct: 193 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 252
Query: 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160
           SV+ D  + ++D R+   S   +        +  L +N      +AT   D   V + D+
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 311
Query: 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG--QPVEGGLD-- 216
           R   L +   + H+  +  + W+PH+   + ++G D +  +WDLS +G  Q  E   D  
Sbjct: 312 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 371
Query: 217 PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
           P L +  G   A+I    W+ ++P W+  + S
Sbjct: 372 PELLFIHGGHTAKISDFSWNPNEP-WIICSVS 402

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 33  LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHD 85
           L G++   Y        WN      + ++S D T  +WDI     E + VD + I   H 
Sbjct: 175 LRGHQKEGY-----GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 86  KEVYDIAWGGV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143
             V D+AW  +   +F SV+ D  + ++D R    S   +        +  L +N     
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
            +AT   D   V + D+R   L +   + H+  +  + W+PH+   + ++G D +  +WD
Sbjct: 290 ILATGSADKT-VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 204 LSSMG--QPVEGGLD--PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
           LS +G  Q  E   D  P L +  G   A+I    W+ ++P WV  + S
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVS 396

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 33  LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHD 85
           L G++   Y        WN      + ++S D T  +WDI     E + VD + I   H 
Sbjct: 175 LRGHQKEGY-----GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 86  KEVYDIAWGGV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143
             V D+AW  +   +F SV+ D  + ++D R    S   +        +  L +N     
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
            +AT   D   V + D+R   L +   + H+  +  + W+PH+   + ++G D +  +WD
Sbjct: 290 ILATGSADKT-VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 204 LSSMG--QPVEGGLD--PILAYTAG---AEIEQLQWSSSQPDWVAIAFS 245
           LS +G  Q  E   D  P L +  G   A+I    W+ ++P WV  + S
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVS 396

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 23/229 (10%)
Query: 33  LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI-----EREAVDTQLI--AHD 85
           L G++   Y        WN      + ++S D T  +WDI     E + VD + I   H 
Sbjct: 173 LRGHQKEGY-----GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 86  KEVYDIAWGGV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR 143
             V D++W  +   +F SV+ D  + ++D R    S   +        +  L +N     
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
            +AT   D   V + D+R   L +   + H+  +  + W+PH+   + ++G D +  +WD
Sbjct: 288 ILATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Query: 204 LSSMGQP-----VEGGLDPILAYTAG--AEIEQLQWSSSQPDWVAIAFS 245
           LS +G+       E G   +L    G  A+I    W+ ++P WV  + S
Sbjct: 347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVS 394

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 19/123 (15%)
Query: 7   LLATSS--DFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEP-RRIGTSSI 63
           LLA+SS  D +R+W+  D+D   E  ++LNG++     G + S D+++ E   R+ + S 
Sbjct: 167 LLASSSYDDTVRIWKDYDDDW--ECVAVLNGHE-----GTVWSSDFDKTEGVFRLCSGSD 219
Query: 64  DTTCTIW-------DIEREAVDTQLI--AHDKEVYDIAWGGVGVFASVSADGSVRVFDLR 114
           D+T  +W       D ++E V   ++   H ++VY++AWG  G+ ASV ADG + V++  
Sbjct: 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279
Query: 115 DKE 117
           D E
Sbjct: 280 DGE 282

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 94/204 (46%), Gaps = 23/204 (11%)
Query: 60  TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEH 118
           +SS D T  +WD+       + + H  EVY +A+        S  A+  ++++++  +  
Sbjct: 93  SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 119 STIIYESSEPD-------TPLVRLGWNKQDPR--YMATIIMDSAKVVVLDIRFPTLPVVE 169
            +   + +  D       +P+++   NK  P   Y A++  D  ++ V +  F       
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSA-NKVQPFAPYFASVGWD-GRLKVWNTNFQIR--YT 208
Query: 170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
            + H+++VN ++ +P+   +I T G D + LIWD+ ++  P          + AG+ I Q
Sbjct: 209 FKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQR-------EFDAGSTINQ 260
Query: 230 LQWSSSQPDWVAIAFSTKLQILRV 253
           + + + +  WVA+     ++I  +
Sbjct: 261 IAF-NPKLQWVAVGTDQGVKIFNL 283

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 29/212 (13%)
Query: 6   DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDW-NEAEPRRIGTSSI 63
           ++LA + D  + +W  S  D    +  LL   +  EY   ++S  W  E     +GTSS 
Sbjct: 37  NVLAVALDNSVYLWSASSGD----ILQLLQMEQPGEY---ISSVAWIKEGNYLAVGTSSA 89
Query: 64  DTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIY 123
           +    +WD++++     + +H   V  ++W    + +S S  G +   D+R  EH     
Sbjct: 90  EVQ--LWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 124 ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-------LPVVELQRHQAS 176
                +   +R      D R++A+   D+   V     +P+       +P+    +HQ +
Sbjct: 147 SGHSQEVCGLRWA---PDGRHLASGGNDNLVNV-----WPSAPGEGGWVPLQTFTQHQGA 198
Query: 177 VNAIAWAPHSSCHICTAG--DDSQALIWDLSS 206
           V A+AW P  S  + T G   D    IW++ S
Sbjct: 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 6   DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDW-NEAEPRRIGTSSI 63
           ++LA + D  + +W  S  D    +  LL   +  EY   ++S  W  E     +GTSS 
Sbjct: 128 NVLAVALDNSVYLWSASSGD----ILQLLQMEQPGEY---ISSVAWIKEGNYLAVGTSSA 180
Query: 64  DTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH--STI 121
           +    +WD++++     + +H   V  ++W    + +S S  G +   D+R  EH  +T+
Sbjct: 181 EVQ--LWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-------LPVVELQRHQ 174
              S E    +  L W   D R++A+   D+   V     +P+       +P+    +HQ
Sbjct: 238 SGHSQE----VCGLRW-APDGRHLASGGNDNLVNV-----WPSAPGEGGWVPLQTFTQHQ 287
Query: 175 ASVNAIAWAPHSSCHICTAG--DDSQALIWDLSS 206
            +V A+AW P  S  + T G   D    IW++ S
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 321

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 6   DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDW-NEAEPRRIGTSSI 63
           ++LA + D  + +W  S  D    +  LL   +  EY   ++S  W  E     +GTSS 
Sbjct: 117 NVLAVALDNSVYLWSASSGD----ILQLLQMEQPGEY---ISSVAWIKEGNYLAVGTSSA 169
Query: 64  DTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH--STI 121
           +    +WD++++     + +H   V  ++W    + +S S  G +   D+R  EH  +T+
Sbjct: 170 EVQ--LWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-------LPVVELQRHQ 174
              S E    +  L W   D R++A+   D+   V     +P+       +P+    +HQ
Sbjct: 227 SGHSQE----VCGLRW-APDGRHLASGGNDNLVNV-----WPSAPGEGGWVPLQTFTQHQ 276
Query: 175 ASVNAIAWAPHSSCHICTAG--DDSQALIWDLSS 206
            +V A+AW P  S  + T G   D    IW++ S
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 69  IWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH--STIIYESS 126
           I+D+E +     +  H   V  ++W    V +S S  G++   D+R   H   T+   SS
Sbjct: 160 IYDVESQTKLRTMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218
Query: 127 EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS 186
           E    +  L W + D   +A+   D+  V + D R  ++P      H A+V A+AW P  
Sbjct: 219 E----VCGLAW-RSDGLQLASGGNDNV-VQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 187 SCHICTAGD--DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS 233
           S  + T G   D Q   W+ ++  +        +    AG+++  L WS
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGAR--------VNTVDAGSQVTSLIWS 312

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 56  RRIGTSSIDTTCTIWDIEREA---VDTQLIAHDKEVYDIAWGGVG---VFASVSADGSVR 109
           +R+ T S D T  I+++E E    +DT L  H+  V+ + W       + AS S DG V 
Sbjct: 22  KRMATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 110 VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR--FPTLPV 167
           ++   +   S I   +      +  + W   +   M  +     KV V++ +    T P+
Sbjct: 81  IWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139
Query: 168 VELQRHQASVNAIAWAPHS------------SCHICTAGDDSQALIWDLSSMGQ 209
           + +  H   VN+ +WAP +            S    T G D+   IW  +S  Q
Sbjct: 140 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.48
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.47
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.46
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.43
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.43
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.36
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.35
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.17
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.15
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.15
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.12
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.11
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.1
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.1
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.07
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.97
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.96
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.96
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.91
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.9
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.89
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.89
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.87
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.87
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.85
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.85
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.83
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.75
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.71
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.69
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.66
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.53
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.53
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.52
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.51
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.5
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.5
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.49
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.43
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.43
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.4
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.4
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.38
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.34
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.32
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.32
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.32
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.31
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.29
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.21
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.21
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.2
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.15
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.01
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.95
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.9
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.87
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.86
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.85
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.81
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.69
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.69
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.68
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.65
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.6
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.6
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.53
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.45
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.45
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.44
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.44
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.42
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.37
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.36
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.25
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.09
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.08
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.06
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.96
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.73
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.62
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.58
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.47
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.43
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.38
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.38
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.32
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.26
3ott_A	758	Two-component system sensor histidine kinase; beta	96.01
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.96
3ott_A	758	Two-component system sensor histidine kinase; beta	95.9
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.87
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.65
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.2
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.07
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.64
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.45
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.17
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.52
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.57
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.41
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.35
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.28
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.86
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.55
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.18
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.88
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.1
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	82.64
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	81.68

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.6e-45  Score=284.97  Aligned_cols=233  Identities=17%  Similarity=0.255  Sum_probs=194.2

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      ++.+++++.+ +|+|||+.+++........+.+|.     ..|++++|+ +++++|++|+.|++|++||+++++.+..+.
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~-----~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~  166 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHD-----DIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYR  166 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCeEEEEECCCEEEEEeccCCCceeEeeccccCCC-----CCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            3444444446 999999988622222334456888     899999999 899999999999999999999999999999


Q ss_pred             cccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           83 AHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      +|...|.+++|+ ++ .+|++++.|++|++||+++++....+.. ..+...+.+++|+|.+++++++|+.|+. |++||+
T Consensus       167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~  244 (344)
T 4gqb_B          167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDT  244 (344)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSE-EEEEES
T ss_pred             CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCc-EEEEEC
Confidence            999999999999 55 5789999999999999999876544432 2344478999999977889999999998 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      ++.+ ++..+.+|...|++++|+|++.++|++|+.|++|+|||+++++.        ....+|...|++++|+|+++.++
T Consensus       245 ~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--------~~~~~H~~~V~~v~~sp~~~~ll  315 (344)
T 4gqb_B          245 KSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--------FRSQAHRDFVRDATWSPLNHSLL  315 (344)
T ss_dssp             CC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--------EEECCCSSCEEEEEECSSSTTEE
T ss_pred             CCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--------EEEcCCCCCEEEEEEeCCCCeEE
Confidence            9866 48899999999999999999866899999999999999987642        35678999999999999998766


Q ss_pred             -EEEcCCcEEEEEC
Q 035558          241 -AIAFSTKLQILRV  253 (253)
Q Consensus       241 -~~~~~~~i~vw~l  253 (253)
                       +++.|+.|++|++
T Consensus       316 as~s~D~~v~~w~v  329 (344)
T 4gqb_B          316 TTVGWDHQVVHHVV  329 (344)
T ss_dssp             EEEETTSCEEEEEC
T ss_pred             EEEcCCCeEEEEEC
Confidence             6889999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.6e-43  Score=268.87  Aligned_cols=230  Identities=16%  Similarity=0.143  Sum_probs=201.2

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ | .|++||+.++    +....+..|.     .+|.+++|+ +++++|++|+.|+.|++||+++++.+..
T Consensus        23 p~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~-----~~v~~~~~~-~~~~~l~s~s~d~~i~vwd~~~~~~~~~   92 (304)
T 2ynn_A           23 PTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTE-----TPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (304)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTT----EEEEEEECCS-----SCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccC-----CcEEEEEEe-CCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence            3566777776 5 9999999987    7788899998     899999999 8999999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|...|.+++|+ ++.+|++|+.|++|++||++++...  ......|...|.+++|+|.++.+|++++.|+. |++||
T Consensus        93 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-v~iwd  169 (304)
T 2ynn_A           93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWS  169 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE--EEEECCCCSCEEEEEECTTCTTEEEEEETTSE-EEEEE
T ss_pred             EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch--hhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-EEEEE
Confidence            99999999999999 9999999999999999999887532  23345677799999999977899999999998 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEec--CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAP--HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ++...........|...+..++|+|  ++ .+|++|+.|++|++||+++++..       ..+.+|...|..++|+|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~~-------~~~~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          170 LGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCV-------ATLEGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             TTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTEEE-------EEEECCSSCEEEEEECSSSS
T ss_pred             CCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCccc-------eeeCCCCCCEEEEEECCCCC
Confidence            9886654444456778899999987  55 59999999999999999987644       36778999999999999999


Q ss_pred             ceEEEEcCCcEEEEEC
Q 035558          238 DWVAIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~l  253 (253)
                      .+++++.|+.|++|++
T Consensus       242 ~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          242 IIISGSEDGTLKIWNS  257 (304)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             EEEEEcCCCeEEEEEC
Confidence            8999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4e-43  Score=276.11  Aligned_cols=233  Identities=18%  Similarity=0.286  Sum_probs=192.8

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      ++.+++++.+ +|+|||+.++...........+|.     ..|++++|+ |++++|++|+.|+.|++||+++++.+..+.
T Consensus       105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-----~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~  178 (357)
T 4g56_B          105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHD-----DIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYN  178 (357)
T ss_dssp             TTEEEEEETTSCEEEC--------CCCCEEECCCS-----SCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEECCCEEEEeeccccceeEEEeeccCCCC-----CCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            4567777777 999999988622222233445777     899999999 899999999999999999999999999999


Q ss_pred             cccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           83 AHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      +|...|++++|+ ++ .++++++.||+|++||+++++....+. ...+...+.+++|+|..+.+|++++.++. |++||+
T Consensus       179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~  256 (357)
T 4g56_B          179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNI  256 (357)
T ss_dssp             CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEES
T ss_pred             CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-eccccccccchhhhhcccceEEEeecccc-eeEEEC
Confidence            999999999999 54 589999999999999999887544332 23455689999999966789999999998 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCCce
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQPDW  239 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  239 (253)
                      ++.+ ++..+..|...|++++|+|++.++|++|+.|++|+|||+++++.        ....+|...|++++|+| ++..|
T Consensus       257 ~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--------~~~~~H~~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          257 KNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV--------FRDLSHRDFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             SCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE--------EEECCCSSCEEEEEECSSSTTEE
T ss_pred             CCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--------eEECCCCCCEEEEEEeCCCCCEE
Confidence            9866 47889999999999999999866899999999999999987652        35568999999999998 67778


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.|+.|++|++
T Consensus       328 ~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          328 TTVGWDHKVLHHHL  341 (357)
T ss_dssp             EEEETTSCEEEEEC
T ss_pred             EEEcCCCeEEEEEC
Confidence            89999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-42  Score=267.62  Aligned_cols=226  Identities=16%  Similarity=0.299  Sum_probs=203.2

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.++++++ | +|++||+.++    +....+..|.     ..+.+++|+ |++++|++|+.||.|++|++++++....+
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~----~~~~~~~~~~-----~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~  160 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENG----KQIKSIDAGP-----VDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSL  160 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTT----EEEEEEECCT-----TCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCC----CEEEEEeCCC-----ccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence            456777777 5 9999999987    7788888887     789999999 89999999999999999999999988888


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      ..|...|.+++|+ ++++|++++.||.|++||+++++.   +.....+..+|.+++|+| ++++|++++.|+. |++||+
T Consensus       161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~-i~iwd~  235 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL---LHTLEGHAMPIRSLTFSP-DSQLLVTASDDGY-IKIYDV  235 (321)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCCCEEEECT-TSCEEEEECTTSC-EEEEET
T ss_pred             cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---EEEEcccCCceeEEEEcC-CCCEEEEEcCCCe-EEEEEC
Confidence            8899999999999 999999999999999999998863   333456777999999999 9999999999999 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      +... ....+.+|...|.+++|+|++ .+|++++.|++|++||++++....       .+.+|...|.+++|+|+++.++
T Consensus       236 ~~~~-~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~-------~~~~h~~~v~~v~~s~~g~~l~  306 (321)
T 3ow8_A          236 QHAN-LAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCVH-------TFFDHQDQVWGVKYNGNGSKIV  306 (321)
T ss_dssp             TTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEE
T ss_pred             CCcc-eeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEEE-------EEcCCCCcEEEEEECCCCCEEE
Confidence            9765 478889999999999999999 699999999999999998876443       6678999999999999999999


Q ss_pred             EEEcCCcEEEEEC
Q 035558          241 AIAFSTKLQILRV  253 (253)
Q Consensus       241 ~~~~~~~i~vw~l  253 (253)
                      +++.|+.|++|++
T Consensus       307 s~~~d~~i~vwd~  319 (321)
T 3ow8_A          307 SVGDDQEIHIYDC  319 (321)
T ss_dssp             EEETTCCEEEEEC
T ss_pred             EEeCCCeEEEEeC
Confidence            9999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-42  Score=266.76  Aligned_cols=229  Identities=19%  Similarity=0.349  Sum_probs=201.4

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++|+ | +|++|++..+  .......+.+|.     ..|.+++|+ +++.++++++.|++|++||+++++.+..
T Consensus        46 ~~~~~l~tgs~D~~v~vW~~~~~--~~~~~~~l~gh~-----~~v~~~~~~-~~~~~l~s~s~D~~i~lWd~~~~~~~~~  117 (321)
T 3ow8_A           46 ENSETVVTGSLDDLVKVWKWRDE--RLDLQWSLEGHQ-----LGVVSVDIS-HTLPIAASSSLDAHIRLWDLENGKQIKS  117 (321)
T ss_dssp             ---CEEEEEETTSCEEEEEEETT--EEEEEEEECCCS-----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEECCCC--CeeeeeeeccCC-----CCEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCEEEE
Confidence            3577889888 5 9999999874  233456788999     899999999 8899999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +..|...+.+++|+ ++++|++++.||.|++||+++++....+   ..+...+.+++|+| ++++|++++.|+. |++||
T Consensus       118 ~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~---~~~~~~v~~~~~sp-dg~~lasg~~dg~-i~iwd  192 (321)
T 3ow8_A          118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL---DTRGKFILSIAYSP-DGKYLASGAIDGI-INIFD  192 (321)
T ss_dssp             EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE---ECSSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred             EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe---cCCCceEEEEEECC-CCCEEEEEcCCCe-EEEEE
Confidence            99999999999999 9999999999999999999988744333   34455899999999 9999999999999 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      +++.+ .+..+.+|..+|.+++|+|++ ++|++|+.|+.|++||++.....       ..+.+|...|.+++|+|+++.+
T Consensus       193 ~~~~~-~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~-------~~~~~h~~~v~~~~~sp~~~~l  263 (321)
T 3ow8_A          193 IATGK-LLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLA-------GTLSGHASWVLNVAFCPDDTHF  263 (321)
T ss_dssp             TTTTE-EEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEE-------EEECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCc-EEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCccee-------EEEcCCCCceEEEEECCCCCEE
Confidence            99865 478889999999999999999 69999999999999999886643       3677899999999999999999


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.|+.|++|++
T Consensus       264 ~s~s~D~~v~iwd~  277 (321)
T 3ow8_A          264 VSSSSDKSVKVWDV  277 (321)
T ss_dssp             EEEETTSCEEEEET
T ss_pred             EEEeCCCcEEEEeC
Confidence            99999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.7e-42  Score=274.31  Aligned_cols=228  Identities=18%  Similarity=0.263  Sum_probs=203.5

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++|+ | +|++||+...    +++..+.+|.     ..|.+++|+ |++++|++|+.|++|++||+++++.+..
T Consensus       160 ~~~~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~-----~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~  229 (410)
T 1vyh_C          160 HSGKLLASCSADMTIKLWDFQGF----ECIRTMHGHD-----HNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKT  229 (410)
T ss_dssp             TTSSEEEEEETTSCCCEEETTSS----CEEECCCCCS-----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCC----ceeEEEcCCC-----CCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            3567888877 5 9999999887    7888999998     899999999 8899999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC------------------
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD------------------  141 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------  141 (253)
                      +.+|...|.++.++ ++.+|++|+.|++|++||+++.+...   ....|...|.+++|+|..                  
T Consensus       230 ~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (410)
T 1vyh_C          230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGK  306 (410)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred             EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee---EecCCCceEEEEEEcCcccccchhhhccccccccCC
Confidence            99999999999999 99999999999999999999887433   334667799999999832                  


Q ss_pred             -CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558          142 -PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       142 -~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                       +.++++++.|+. |++||++++. ++..+.+|...|.+++|+|++ .+|++|+.||+|++||+.+++..       ..+
T Consensus       307 ~g~~l~sgs~D~~-i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~-------~~~  376 (410)
T 1vyh_C          307 PGPFLLSGSRDKT-IKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCM-------KTL  376 (410)
T ss_dssp             -CCEEEEEETTSE-EEEEETTTTE-EEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCC-------EEE
T ss_pred             CCCEEEEEeCCCe-EEEEECCCCc-eEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceE-------EEE
Confidence             668999999998 9999999865 478889999999999999999 69999999999999999876644       367


Q ss_pred             ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .+|...|++++|+|+++++++++.|+.|++|++
T Consensus       377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            789999999999999999999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-41  Score=272.47  Aligned_cols=227  Identities=17%  Similarity=0.267  Sum_probs=203.7

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.+|++|+ | .|++||+.++    +....+++|.     ..|.+++|+ +++++|++|+.|++|++||+.+++.+..+
T Consensus       119 ~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~-----~~V~~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~~~~  188 (410)
T 1vyh_C          119 VFSVMVSASEDATIKVWDYETG----DFERTLKGHT-----DSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECIRTM  188 (410)
T ss_dssp             SSSEEEEEESSSCEEEEETTTC----CCCEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred             CCCEEEEEeCCCeEEEEECCCC----cEEEEEeccC-----CcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence            466777777 5 9999999987    7888999999     899999999 88999999999999999999999999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      .+|...|.+++|+ ++++|++|+.|++|++||++++.....+   ..|...|.+++|+| ++.++++++.|+. |++||+
T Consensus       189 ~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~~~-~g~~l~s~s~D~~-v~vwd~  263 (410)
T 1vyh_C          189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---TGHREWVRMVRPNQ-DGTLIASCSNDQT-VRVWVV  263 (410)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECT-TSSEEEEEETTSC-EEEEET
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---eCCCccEEEEEECC-CCCEEEEEcCCCe-EEEEEC
Confidence            9999999999999 9999999999999999999998754433   46667899999999 9999999999999 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCC-------------------CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHS-------------------SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY  221 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  221 (253)
                      ++.. +...+..|...|.+++|+|++                   +.+|++|+.|+.|++||++++....       .+.
T Consensus       264 ~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~-------~~~  335 (410)
T 1vyh_C          264 ATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM-------TLV  335 (410)
T ss_dssp             TTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE-------EEE
T ss_pred             CCCc-eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE-------EEE
Confidence            8865 477888999999999999962                   1489999999999999999876443       677


Q ss_pred             cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          222 TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       222 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|...|.+++|+|+++++++++.|+.|++|++
T Consensus       336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            89999999999999999999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.3e-40  Score=254.17  Aligned_cols=238  Identities=19%  Similarity=0.292  Sum_probs=193.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCce--e
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREA--V   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~--~   77 (253)
                      +++++|++++ | +|+||++...  ..+...++.+|.     ++|.+++|+|+ ++++|++|+.|++|++||+++++  .
T Consensus        19 ~~g~~las~s~D~~v~iw~~~~~--~~~~~~~l~gH~-----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~   91 (297)
T 2pm7_B           19 YYGKRMATCSSDKTIKIFEVEGE--THKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ   91 (297)
T ss_dssp             TTSSEEEEEETTSCEEEEEBCSS--CBCCCEEECCCS-----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred             CCCCEEEEEeCCCEEEEEecCCC--CcEEEEEEcccc-----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence            4577888887 5 9999999752  225678899999     89999999844 48999999999999999998774  5


Q ss_pred             eeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC------------C
Q 035558           78 DTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD------------P  142 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~  142 (253)
                      +..+.+|...|.+++|+ +  +.+|++++.|+.|++||+++...... .....|...|.+++|+|..            +
T Consensus        92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~  170 (297)
T 2pm7_B           92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC------------C
T ss_pred             EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCcccccccCCCCCCc
Confidence            55677899999999999 5  78999999999999999987642211 2234566799999999931            5


Q ss_pred             CEEEEEEeCCCeEEEEECCCCCC---CeeeecccccceeEEEEecCC--CCeEEEecCCCcEEEEeccCCCCCCCCCCCC
Q 035558          143 RYMATIIMDSAKVVVLDIRFPTL---PVVELQRHQASVNAIAWAPHS--SCHICTAGDDSQALIWDLSSMGQPVEGGLDP  217 (253)
Q Consensus       143 ~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  217 (253)
                      ++|++++.|+. |++||+++...   ....+.+|...|.+++|+|++  ..+|++++.|++|++||++....+.    ..
T Consensus       171 ~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~----~~  245 (297)
T 2pm7_B          171 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW----KK  245 (297)
T ss_dssp             CEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----EE
T ss_pred             ceEEEEcCCCc-EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc----ce
Confidence            79999999999 99999987552   346788999999999999985  3699999999999999998754221    00


Q ss_pred             eee--ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          218 ILA--YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       218 ~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...  ..|...|.+++|+|+++.|++++.|+.|++|++
T Consensus       246 ~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            112  467889999999999999999999999999973

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=258.93  Aligned_cols=240  Identities=18%  Similarity=0.337  Sum_probs=196.7

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--eee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--AVD   78 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~   78 (253)
                      +++.+||+++ | .|+||++..+ ..........+|.     ..|.+++|+ |++++|++|+.|+.|++|++..+  +.+
T Consensus        26 p~g~~las~~~D~~i~iw~~~~~-~~~~~~~~~~~h~-----~~v~~~~~s-p~g~~l~s~s~D~~v~iw~~~~~~~~~~   98 (345)
T 3fm0_A           26 PAGTLLASCGGDRRIRIWGTEGD-SWICKSVLSEGHQ-----RTVRKVAWS-PCGNYLASASFDATTCIWKKNQDDFECV   98 (345)
T ss_dssp             TTSSCEEEEETTSCEEEEEEETT-EEEEEEEECSSCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred             CCCCEEEEEcCCCeEEEEEcCCC-cceeeeeeccccC-----CcEEEEEEC-CCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence            3577888877 5 9999999875 1111122346788     899999999 89999999999999999999876  456


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ..+.+|...|.+++|+ ++++|++++.|++|++||+++......+.....|...|.+++|+| ++.+|++++.|+. |++
T Consensus        99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~-i~~  176 (345)
T 3fm0_A           99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDT-VKL  176 (345)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSC-EEE
T ss_pred             EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCc-EEE
Confidence            7888999999999999 999999999999999999998765555555667778999999999 8999999999999 999


Q ss_pred             EECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC---CC-----Ceeec-cCCCce
Q 035558          158 LDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG---LD-----PILAY-TAGAEI  227 (253)
Q Consensus       158 ~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~-----~~~~~-~~~~~v  227 (253)
                      ||.+... .+...+.+|...|++++|+|++ ++|++++.|++|++||...........   ..     ..... .|...|
T Consensus       177 w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  255 (345)
T 3fm0_A          177 YREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI  255 (345)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred             EEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence            9998754 2356788999999999999999 699999999999999975443221000   00     01122 388899


Q ss_pred             eEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          228 EQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .+++|+|++..+++++.|+.+++|+
T Consensus       256 ~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          256 YDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             EEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EEEEEecCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.6e-40  Score=256.96  Aligned_cols=232  Identities=20%  Similarity=0.374  Sum_probs=193.1

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCcc---ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDR---RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      |+++.+|++|+ | +|++||+.....   ...+...+.+|.     ..|.+++|+ +++.++++|+.|++|++||+++++
T Consensus        36 ~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~-----~~V~~~~~~-~~~~~l~s~s~D~~v~lwd~~~~~  109 (343)
T 2xzm_R           36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN-----HFVSDLALS-QENCFAISSSWDKTLRLWDLRTGT  109 (343)
T ss_dssp             TCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS-----SCEEEEEEC-SSTTEEEEEETTSEEEEEETTSSC
T ss_pred             CCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC-----CceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCc
Confidence            44788999988 4 999999975311   124566788998     899999999 889999999999999999999999


Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC----------CEE
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP----------RYM  145 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~l  145 (253)
                      .+..+.+|...|.+++|+ ++++|++++.|++|++||+.... .........+...|.+++|+| ++          .++
T Consensus       110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l  187 (343)
T 2xzm_R          110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYF  187 (343)
T ss_dssp             EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEE
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeecc-ccccccccCCCCCEE
Confidence            999999999999999999 99999999999999999998432 222223335667899999999 54          789


Q ss_pred             EEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC
Q 035558          146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA  225 (253)
Q Consensus       146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (253)
                      ++++.|+. |++||.+  ......+.+|...|.+++|+|++ ++|++|+.||.|++||+.....+.       ....+..
T Consensus       188 ~s~~~d~~-i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~-------~~~~~~~  256 (343)
T 2xzm_R          188 ASVGWDGR-LKVWNTN--FQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQ-------REFDAGS  256 (343)
T ss_dssp             EEEETTSE-EEEEETT--TEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCS-------EEEECSS
T ss_pred             EEEcCCCE-EEEEcCC--CceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccc-------eeecCCC
Confidence            99999998 9999954  23467788999999999999999 699999999999999996554333       3444567


Q ss_pred             ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          226 EIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       226 ~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .|.+++|+|+++ +++++.|+.+++|++
T Consensus       257 ~v~~v~~sp~~~-~la~~~d~~v~iw~~  283 (343)
T 2xzm_R          257 TINQIAFNPKLQ-WVAVGTDQGVKIFNL  283 (343)
T ss_dssp             CEEEEEECSSSC-EEEEEESSCEEEEES
T ss_pred             cEEEEEECCCCC-EEEEECCCCEEEEEe
Confidence            799999999986 677888999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.3e-40  Score=257.29  Aligned_cols=229  Identities=17%  Similarity=0.283  Sum_probs=196.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ + .|++|++............+.+|.     ..|.++.|+ +++ .+++++.|+.|++||+++++.+..
T Consensus       107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~-~~~-~l~s~s~d~~i~~wd~~~~~~~~~  179 (340)
T 1got_B          107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFL-DDN-QIVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----SCEEEEEEE-ETT-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC-----ccEEEEEEC-CCC-cEEEEECCCcEEEEECCCCcEEEE
Confidence            3567778777 5 999999987534445677788998     899999998 544 588999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|...|.+++|+ +++++++|+.|+.|++||++++...   .....|...|.+++|+| ++++|++++.|+. |++||
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~---~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~-v~iwd  254 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATGSDDAT-CRLFD  254 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE---EEECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE---EEEcCCcCCEEEEEEcC-CCCEEEEEcCCCc-EEEEE
Confidence            99999999999999 9999999999999999999988743   33356777999999999 9999999999999 99999


Q ss_pred             CCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          160 IRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       160 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ++.... +..+.  .+...|.+++|+|++ ++|++|+.||.|++||+.+....       ..+.+|..+|.+++|+|++.
T Consensus       255 ~~~~~~-~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~-------~~~~~h~~~v~~~~~s~dg~  325 (340)
T 1got_B          255 LRADQE-LMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             TTTTEE-EEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE-------EEEECCSSCEEEEEECTTSS
T ss_pred             CCCCcE-EEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEe-------eEeecCCCcEEEEEEcCCCC
Confidence            987553 44443  233579999999999 69999999999999999886643       36778999999999999999


Q ss_pred             ceEEEEcCCcEEEEE
Q 035558          238 DWVAIAFSTKLQILR  252 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~  252 (253)
                      .+++++.|+.|++|+
T Consensus       326 ~l~s~s~D~~i~iWd  340 (340)
T 1got_B          326 AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEcCCccEEecC
Confidence            999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.2e-41  Score=259.98  Aligned_cols=240  Identities=18%  Similarity=0.286  Sum_probs=195.3

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCce--e
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREA--V   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~--~   77 (253)
                      +++++|++++ | +|++||+..+  .......+++|.     .+|.+++|+|+ ++++|++|+.|++|++||+++++  .
T Consensus        23 ~~g~~lasgs~D~~v~lwd~~~~--~~~~~~~l~gH~-----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~   95 (316)
T 3bg1_A           23 YYGTRLATCSSDRSVKIFDVRNG--GQILIADLRGHE-----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK   95 (316)
T ss_dssp             GGGCEEEEEETTTEEEEEEEETT--EEEEEEEEECCS-----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred             CCCCEEEEEeCCCeEEEEEecCC--CcEEEEEEcCCC-----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence            3567888887 5 9999999874  123567789999     89999999844 58999999999999999998874  5


Q ss_pred             eeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-------------
Q 035558           78 DTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-------------  141 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------  141 (253)
                      ...+.+|...|.+++|+ +  +.+|++++.|++|++||++.............|...+.+++|+|..             
T Consensus        96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  175 (316)
T 3bg1_A           96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK  175 (316)
T ss_dssp             EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCC
T ss_pred             EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccC
Confidence            56677899999999999 5  7899999999999999998765333334445677789999999831             


Q ss_pred             ---CCEEEEEEeCCCeEEEEECCCCC--CCeeeecccccceeEEEEecCC---CCeEEEecCCCcEEEEeccCCCCCCCC
Q 035558          142 ---PRYMATIIMDSAKVVVLDIRFPT--LPVVELQRHQASVNAIAWAPHS---SCHICTAGDDSQALIWDLSSMGQPVEG  213 (253)
Q Consensus       142 ---~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~  213 (253)
                         +.+|++++.|+. |++||++...  .++..+.+|...|.+++|+|++   ..+|++++.|++|++|+++......  
T Consensus       176 ~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~--  252 (316)
T 3bg1_A          176 PNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT--  252 (316)
T ss_dssp             CCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC--
T ss_pred             ccccceEEEecCCCe-EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc--
Confidence               468999999998 9999997543  2466788999999999999985   2589999999999999998742110  


Q ss_pred             CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          214 GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                       ........|...|.+++|+|+++.+++++.|+.|++|++
T Consensus       253 -~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          253 -WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             -CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             -hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence             011245678899999999999999999999999999973

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.1e-40  Score=259.11  Aligned_cols=232  Identities=16%  Similarity=0.162  Sum_probs=183.3

Q ss_pred             CCCceEEeecC-cEEEEEccCC-------ccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558            3 QKPDLLATSSD-FLRVWRISDE-------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~   74 (253)
                      ++|.+|+++++ ++|+||....       ............+.     ..|.+++|+ ++ +.|++|+.||+|++||+++
T Consensus        40 ~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s-~d-~~l~~~s~dg~v~lWd~~~  112 (344)
T 4gqb_B           40 SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE-----AGVADLTWV-GE-RGILVASDSGAVELWELDE  112 (344)
T ss_dssp             TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEES-----SCEEEEEEE-TT-TEEEEEETTSEEEEEEECT
T ss_pred             CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccC-----CCEEEEEEe-CC-CeEEEEECCCEEEEEeccC
Confidence            46788999888 8898874321       00001111112233     689999999 55 5788999999999999998


Q ss_pred             ceeeee----eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           75 EAVDTQ----LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        75 ~~~~~~----~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      ++....    +.+|...|++++|+ ++++|++|+.|++|++||+++++.   +.....|...|.+++|+|.+..+|++++
T Consensus       113 ~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~---~~~~~~h~~~V~~~~~~~~~~~~l~s~s  189 (344)
T 4gqb_B          113 NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV---LSSYRAHAAQVTCVAASPHKDSVFLSCS  189 (344)
T ss_dssp             TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE---EEEEcCcCCceEEEEecCCCCCceeeec
Confidence            875443    34899999999999 999999999999999999998864   4444577889999999995557889999


Q ss_pred             eCCCeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      .|+. |++||+++.+. ...+.  .|...+.+++|+|++.++|++|+.||+|++||+++++...       .+.+|...|
T Consensus       190 ~D~~-v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-------~~~~h~~~v  260 (344)
T 4gqb_B          190 EDNR-ILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-------SSAVHSQCV  260 (344)
T ss_dssp             TTSC-EEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE-------EEECCSSCE
T ss_pred             cccc-cccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE-------EEcCCCCCE
Confidence            9998 99999998664 55553  4556799999999776789999999999999999876543       778899999


Q ss_pred             eEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558          228 EQLQWSSSQP-DWVAIAFSTKLQILRV  253 (253)
Q Consensus       228 ~~~~~~~~~~-~~~~~~~~~~i~vw~l  253 (253)
                      ++++|+|++. ++++++.|+.|+||++
T Consensus       261 ~~v~fsp~g~~~lasgs~D~~i~vwd~  287 (344)
T 4gqb_B          261 TGLVFSPHSVPFLASLSEDCSLAVLDS  287 (344)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence            9999999985 5678999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-39  Score=254.56  Aligned_cols=229  Identities=15%  Similarity=0.213  Sum_probs=194.9

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----e
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----A   76 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~   76 (253)
                      +++.+|++++ | .|++||+.++    +....+..|.     ..|.+++|+ +++++|++|+.|+.|++|++.+.    +
T Consensus        65 ~d~~~l~s~s~Dg~v~iWd~~~~----~~~~~~~~~~-----~~v~~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~~~~~  134 (340)
T 1got_B           65 TDSRLLLSASQDGKLIIWDSYTT----NKVHAIPLRS-----SWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVR  134 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTC----CEEEEEECSS-----SCEEEEEEC-TTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCC----CcceEeecCC-----ccEEEEEEC-CCCCEEEEEeCCCeEEEEECccCCCcce
Confidence            4567888877 5 9999999887    7778888888     899999999 89999999999999999999765    3


Q ss_pred             eeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           77 VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ....+.+|...|.++.|+++..+++++.|++|++||+++++..   .....|...|.+++|+| ++.++++++.|+. |+
T Consensus       135 ~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~-v~  209 (340)
T 1got_B          135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT---TTFTGHTGDVMSLSLAP-DTRLFVSGACDAS-AK  209 (340)
T ss_dssp             EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECT-TSSEEEEEETTSC-EE
T ss_pred             eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEE---EEEcCCCCceEEEEECC-CCCEEEEEeCCCc-EE
Confidence            5566789999999999994445899999999999999988643   33456777999999999 8999999999999 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      +||+++.. ++..+.+|...|++++|+|++ .+|++|+.||+|++||++......     ......+...|.+++|+|++
T Consensus       210 ~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~s~~g  282 (340)
T 1got_B          210 LWDVREGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELM-----TYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             EEETTTCS-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE-----EECCTTCCSCEEEEEECTTS
T ss_pred             EEECCCCe-eEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEE-----EEccCCcccceEEEEECCCC
Confidence            99999865 478899999999999999999 699999999999999998765322     01111234579999999999


Q ss_pred             CceEEEEcCCcEEEEEC
Q 035558          237 PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~~~~~i~vw~l  253 (253)
                      +.+++++.|+.|++|++
T Consensus       283 ~~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             SEEEEEETTSEEEEEET
T ss_pred             CEEEEECCCCeEEEEEc
Confidence            99999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-39  Score=250.66  Aligned_cols=229  Identities=18%  Similarity=0.252  Sum_probs=195.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~   79 (253)
                      +++++|++++ | .|++||+.++    +.+..+.+|.     ..|.+++|+ |++.+|++|+.|++|++||++++ ....
T Consensus        65 ~~~~~l~s~s~d~~i~vwd~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~~  134 (304)
T 2ynn_A           65 ARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHP-----DYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (304)
T ss_dssp             GGGTEEEEEETTSEEEEEETTTC----CEEEEEECCS-----SCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred             CCCCEEEEECCCCEEEEEECCCC----cEEEEEeCCC-----CcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchhh
Confidence            3566777777 5 9999999987    7888999999     899999999 88999999999999999999877 4566


Q ss_pred             eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC-CCCEEEEEEeCCCeEE
Q 035558           80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ-DPRYMATIIMDSAKVV  156 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~i~  156 (253)
                      .+.+|...|.+++|+  ++..|++|+.|++|++||+++......+.  ..+...+..+.|+|. ++.+|++++.|+. |+
T Consensus       135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~  211 (304)
T 2ynn_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLT-IK  211 (304)
T ss_dssp             EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSE-EE
T ss_pred             hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EE
Confidence            788999999999999  57899999999999999998876543333  244458899999873 5679999999998 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      +||+++.. ++..+.+|...|.+++|+|++ .+|++|+.||+|++||+++.+...       .+..|...+.+++|+|++
T Consensus       212 iWd~~~~~-~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~-------~~~~~~~~~~~~~~~~~~  282 (304)
T 2ynn_A          212 IWDYQTKS-CVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEK-------TLNVGLERSWCIATHPTG  282 (304)
T ss_dssp             EEETTTTE-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEE-------EECCSSSSEEEEEECTTC
T ss_pred             EEeCCCCc-cceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceee-------eccCCCccEEEEEECCCC
Confidence            99999865 488899999999999999999 599999999999999999876443       566788999999999988


Q ss_pred             Cc-eEEEEcCCcEEEEEC
Q 035558          237 PD-WVAIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~-~~~~~~~~~i~vw~l  253 (253)
                      .. +++++.++.+.+|++
T Consensus       283 ~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          283 RKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             GGGCEEEEETTEEEEEEC
T ss_pred             CceEEEEecCCceEEEEe
Confidence            64 477778888888875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.7e-39  Score=250.65  Aligned_cols=231  Identities=18%  Similarity=0.331  Sum_probs=193.7

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      +|.++++|++++ | +|++|++...... ..+...+++|.     ..|.+++|+ +++++|++|+.|++|++||+++++.
T Consensus        26 ~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~s-~dg~~l~s~s~D~~v~~wd~~~~~~   99 (319)
T 3frx_A           26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-----HIVQDCTLT-ADGAYALSASWDKTLRLWDVATGET   99 (319)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc-----ccEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCCe
Confidence            366778888888 5 9999999753111 24567889999     899999999 8999999999999999999999999


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC-----CCCEEEEEEeC
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ-----DPRYMATIIMD  151 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~~  151 (253)
                      +..+.+|...|.+++|+ ++.+|++++.|++|++||++...    +.....|...+.+++|.|.     ++..+++++.|
T Consensus       100 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d  175 (319)
T 3frx_A          100 YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC----LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND  175 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE----EEEECCCSSCEEEEEECCC------CCEEEEEETT
T ss_pred             eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC
Confidence            99999999999999999 99999999999999999997542    3334467779999999983     24489999999


Q ss_pred             CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558          152 SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ  231 (253)
Q Consensus       152 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  231 (253)
                      +. |++||+++.. ....+.+|...|.+++|+|++ ++|++++.||.|++||+.+.+..        ....+..+|.+++
T Consensus       176 ~~-i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~v~~~~  244 (319)
T 3frx_A          176 KM-VKAWNLNQFQ-IEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM--------YTLSAQDEVFSLA  244 (319)
T ss_dssp             SC-EEEEETTTTE-EEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE--------EEEECCSCEEEEE
T ss_pred             CE-EEEEECCcch-hheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE--------EEecCCCcEEEEE
Confidence            98 9999998755 367788999999999999999 69999999999999999886533        2333567899999


Q ss_pred             EcCCCCceEEEEcCCcEEEEEC
Q 035558          232 WSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |+|++. +++++.++.+++|++
T Consensus       245 ~sp~~~-~la~~~~~~i~v~~~  265 (319)
T 3frx_A          245 FSPNRY-WLAAATATGIKVFSL  265 (319)
T ss_dssp             ECSSSS-EEEEEETTEEEEEEE
T ss_pred             EcCCCC-EEEEEcCCCcEEEEe
Confidence            999997 555566777999973

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.3e-39  Score=251.28  Aligned_cols=230  Identities=14%  Similarity=0.206  Sum_probs=195.3

Q ss_pred             CCCceEEeec-C-cEEEEEccCCc--cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDED--RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +++.+|++++ + .+++|++....  ........+.+|.     ..|.+++|+ +++..|++++.|++|++||+++++.+
T Consensus       116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~  189 (354)
T 2pbi_B          116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----NYLSACSFT-NSDMQILTASGDGTCALWDVESGQLL  189 (354)
T ss_dssp             TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC-----CcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEE
Confidence            4567788877 5 99999986531  1124456677888     899999999 88899999999999999999999999


Q ss_pred             eeeecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           79 TQLIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ..+.+|...|.+++|+   ++++|++|+.||+|++||+++++...   ....|...|.+++|+| ++.+|++++.|+. |
T Consensus       190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~-v  264 (354)
T 2pbi_B          190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ---AFETHESDVNSVRYYP-SGDAFASGSDDAT-C  264 (354)
T ss_dssp             EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSC-E
T ss_pred             EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCCeEEEEEeC-CCCEEEEEeCCCe-E
Confidence            9999999999999997   46899999999999999999987433   3356777999999999 8999999999999 9


Q ss_pred             EEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          156 VVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                      ++||++.... +..+..  +...+.+++|+|++ .+|++|+.|+.|++||+.++...       ..+.+|..+|++++|+
T Consensus       265 ~lwd~~~~~~-~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~-------~~l~~h~~~v~~l~~s  335 (354)
T 2pbi_B          265 RLYDLRADRE-VAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRV-------SILFGHENRVSTLRVS  335 (354)
T ss_dssp             EEEETTTTEE-EEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE-------EEECCCSSCEEEEEEC
T ss_pred             EEEECCCCcE-EEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceE-------EEEECCCCcEEEEEEC
Confidence            9999987543 444433  33478999999999 69999999999999999887643       3677899999999999


Q ss_pred             CCCCceEEEEcCCcEEEEE
Q 035558          234 SSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       234 ~~~~~~~~~~~~~~i~vw~  252 (253)
                      |+++++++++.|+.|++|+
T Consensus       336 pdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          336 PDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEcCCCCEEecC
Confidence            9999999999999999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.9e-39  Score=255.57  Aligned_cols=239  Identities=20%  Similarity=0.277  Sum_probs=193.3

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCc-------------cccCCeeEEEecCCCCCEEEEEeCCCeEE
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNS-------------EYCGPLTSFDWNEAEPRRIGTSSIDTTCT   68 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   68 (253)
                      +++++||++++ .+++|++..+    +....+..|...             .....|.+++|+ +++++|++|+.|+.|+
T Consensus        74 pdg~~la~g~~~~v~i~~~~~g----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~s~~~d~~i~  148 (393)
T 1erj_A           74 NDGEYLATGCNKTTQVYRVSDG----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIR  148 (393)
T ss_dssp             TTSSEEEEECBSCEEEEETTTC----CEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred             CCCCEEEEEcCCcEEEEEecCC----CEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEEEEcCCCeEE
Confidence            46789999888 9999999887    556666554311             011348999999 8999999999999999


Q ss_pred             EEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558           69 IWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT  147 (253)
Q Consensus        69 vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  147 (253)
                      +||+++++.+..+.+|...|.+++|+ ++++|++++.|++|++||+++++....+.    +...+.+++|+|.++.++++
T Consensus       149 iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~  224 (393)
T 1erj_A          149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAA  224 (393)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSTTCCEEEE
T ss_pred             EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCCcEEEEEECCCCCEEEE
Confidence            99999999999999999999999999 99999999999999999999886443332    33479999999988999999


Q ss_pred             EEeCCCeEEEEECCCCCCCeeee-------cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC-----CC
Q 035558          148 IIMDSAKVVVLDIRFPTLPVVEL-------QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-----GL  215 (253)
Q Consensus       148 ~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~  215 (253)
                      ++.|+. |++||+++... +..+       .+|...|.+++|+|++ ++|++|+.|+.|++||++........     ..
T Consensus       225 ~s~d~~-v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~  301 (393)
T 1erj_A          225 GSLDRA-VRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  301 (393)
T ss_dssp             EETTSC-EEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------C
T ss_pred             EcCCCc-EEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence            999999 99999987653 4444       5788999999999999 69999999999999999875432100     01


Q ss_pred             CCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ......+|...|.+++|+|+++++++++.|+.|++|++
T Consensus       302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            12355689999999999999999999999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.6e-39  Score=254.62  Aligned_cols=230  Identities=18%  Similarity=0.251  Sum_probs=195.1

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ | .|++||+.++    +....+.+|.     ..|.+++|+ +++++|++|+.|++|++||+++++....
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~-----~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIENR----KIVMILQGHE-----QDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTT----EEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCC----cEEEEEccCC-----CCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence            3667888877 5 9999999987    7888899999     899999999 8899999999999999999999988777


Q ss_pred             eecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeee----ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           81 LIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIY----ESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        81 ~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      +. +...+.+++|+  ++++|++++.|+.|++||++++.....+.    ....|...|.+++|+| ++++|++++.|+. 
T Consensus       203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~-  279 (393)
T 1erj_A          203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRS-  279 (393)
T ss_dssp             EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSE-
T ss_pred             EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCE-
Confidence            66 66789999998  78899999999999999999887544332    1145677999999999 9999999999998 


Q ss_pred             EEEEECCCCC-----------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558          155 VVVLDIRFPT-----------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA  223 (253)
Q Consensus       155 i~~~d~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (253)
                      |++||+++..           .+...+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++..       ..+.+|
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~-------~~l~~h  351 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPL-------LMLQGH  351 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEE-------EEEECC
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEE-------EEECCC
Confidence            9999997642           1245677899999999999999 69999999999999999987643       367789


Q ss_pred             CCceeEEEEcC------CCCceEEEEcCCcEEEEEC
Q 035558          224 GAEIEQLQWSS------SQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~------~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...|.+++|++      +++.+++++.|+.|++|++
T Consensus       352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence            99999999986      5677889999999999984

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-39  Score=249.70  Aligned_cols=235  Identities=19%  Similarity=0.298  Sum_probs=184.1

Q ss_pred             eEEeec-C-cEEEEEccCCccccceeeee-cC-CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-------c
Q 035558            7 LLATSS-D-FLRVWRISDEDRRVELKSLL-NG-NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-------E   75 (253)
Q Consensus         7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-------~   75 (253)
                      +|++++ | .|++|++..+  .......+ .+ |.     ..|.+++|+ |++++|++|+.|++|++||++.       .
T Consensus        26 ~las~~~D~~i~lw~~~~~--~~~~~~~~~~~~h~-----~~v~~v~~s-p~~~~las~s~D~~v~iw~~~~~~~~~~~~   97 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYD--DFTLIDVLDETAHK-----KAIRSVAWR-PHTSLLAAGSFDSTVSIWAKEESADRTFEM   97 (330)
T ss_dssp             EEEEEESSSCEEEEECSSS--CCEEEEEECTTCCC-----SCEEEEEEC-TTSSEEEEEETTSCEEEEEC-------CCC
T ss_pred             EEEEEcCCCEEEEEEecCC--CeEEEEEEecCCcc-----CCEEEEEEC-CCCCEEEEEeCCCcEEEEEcccCcCccccc
Confidence            788877 5 9999999863  12334444 34 77     899999999 8899999999999999999853       3


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC-CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK-EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      +.+..+.+|...|.+++|+ ++++|++|+.|++|++||++.. .....+.....|...|.+++|+| ++.+|++++.|+.
T Consensus        98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~  176 (330)
T 2hes_X           98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT  176 (330)
T ss_dssp             EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred             eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence            4566788999999999999 9999999999999999999543 33334444567778999999999 8999999999999


Q ss_pred             eEEEEECCCCC-CCeeeecccccceeEEEEecC--CCCeEEEecCCCcEEEEeccCCCCCCCCC-CCCeeec-cCCCcee
Q 035558          154 KVVVLDIRFPT-LPVVELQRHQASVNAIAWAPH--SSCHICTAGDDSQALIWDLSSMGQPVEGG-LDPILAY-TAGAEIE  228 (253)
Q Consensus       154 ~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~-~~~~~v~  228 (253)
                       |++||.+... .++..+.+|...|.+++|+|+  + .+|++|+.|++|++||++......... .....+. .|...|.
T Consensus       177 -i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~  254 (330)
T 2hes_X          177 -VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY  254 (330)
T ss_dssp             -EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEE
T ss_pred             -EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceE
Confidence             9999987643 357788999999999999998  5 589999999999999997653211000 0011222 3899999


Q ss_pred             EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          229 QLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +++|++++ .+++++.|+.|++|++
T Consensus       255 ~v~~s~~~-~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          255 NVAWGFNG-LIASVGADGVLAVYEE  278 (330)
T ss_dssp             EEEECTTS-CEEEEETTSCEEEEEE
T ss_pred             EEEEcCCC-EEEEEeCCCEEEEEEc
Confidence            99999776 6899999999999973

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.8e-39  Score=256.30  Aligned_cols=237  Identities=19%  Similarity=0.267  Sum_probs=193.2

Q ss_pred             CCCceEEeec-C-cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      +++.+|++++ | .+++|++....   ........+.+|.     ..|.++.|+|..+..|++|+.|++|++||+++++.
T Consensus       118 ~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-----~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~  192 (380)
T 3iz6_a          118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK-----GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR  192 (380)
T ss_dssp             TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS-----SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred             CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC-----cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence            4677888887 5 99999997531   1234556788898     88999999966677899999999999999999987


Q ss_pred             eeee-----ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           78 DTQL-----IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        78 ~~~~-----~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      +..+     .+|...|.+++|+  ++++|++|+.|++|++||++....  .+.....|...|.+++|+| ++.+|++++.
T Consensus       193 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~  269 (380)
T 3iz6_a          193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR--AVRTYHGHEGDINSVKFFP-DGQRFGTGSD  269 (380)
T ss_dssp             EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--CCEEECCCSSCCCEEEECT-TSSEEEEECS
T ss_pred             EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--ceEEECCcCCCeEEEEEec-CCCeEEEEcC
Confidence            7766     5789999999997  789999999999999999985432  2333456778999999999 9999999999


Q ss_pred             CCCeEEEEECCCCCCCeeeeccc-------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRH-------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA  223 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (253)
                      |+. |++||++++.. +..+..+       ...|++++|+|++ .+|++|+.||.|++||+...+...   .......+|
T Consensus       270 D~~-i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~h  343 (380)
T 3iz6_a          270 DGT-CRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVL---NLGTLQNSH  343 (380)
T ss_dssp             SSC-EEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEE---EECCSCSSC
T ss_pred             CCe-EEEEECCCCcE-EEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEE---EEecccCCC
Confidence            999 99999998653 4444432       2348999999999 699999999999999998766432   000112579


Q ss_pred             CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...|++++|+|+++.+++++.|+.|++|++
T Consensus       344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          344 EGRISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             CCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             CCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence            999999999999999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-39  Score=258.27  Aligned_cols=238  Identities=15%  Similarity=0.207  Sum_probs=197.3

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----   76 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----   76 (253)
                      ++.+|++|+ | +|++||+.++    +....+..|.     ..|.+++|+ |++++|++|+.|+.+++||+.+..     
T Consensus        77 ~~~~l~s~s~D~~v~iWd~~~~----~~~~~~~~h~-----~~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~  146 (380)
T 3iz6_a           77 EKNWIVSASQDGRLIVWNALTS----QKTHAIKLHC-----PWVMECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGN  146 (380)
T ss_dssp             TSSCEEEEETTSEEEEEETTTT----EEEEEEECCC-----TTCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCC----ccceEEecCC-----CCEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence            567788877 5 9999999887    7788899998     889999999 899999999999999999987532     


Q ss_pred             --eeeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeec--cCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           77 --VDTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYE--SSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        77 --~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                        ....+.+|.+.|.++.|.  ++..|++|+.|++|++||+++++....+..  ...|...|.+++|+|.+++++++++.
T Consensus       147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~  226 (380)
T 3iz6_a          147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC  226 (380)
T ss_dssp             STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred             ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence              345677899999999999  466899999999999999999875544321  24577799999998878899999999


Q ss_pred             CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL  230 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  230 (253)
                      |+. |++||++....++..+.+|...|++++|+|++ .+|++|+.||+|++||++++.........+.....+...|+++
T Consensus       227 D~~-v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  304 (380)
T 3iz6_a          227 DTT-VRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV  304 (380)
T ss_dssp             TSC-EEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred             CCe-EEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence            999 99999997666688999999999999999999 6999999999999999998754320000011111233458999


Q ss_pred             EEcCCCCceEEEEcCCcEEEEEC
Q 035558          231 QWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|+|+++.+++++.|+.|++|++
T Consensus       305 ~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          305 AFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             EECSSSSEEEEECTTSCEEEEET
T ss_pred             EECCCCCEEEEEECCCCEEEEEC
Confidence            99999999999999999999984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.4e-38  Score=245.46  Aligned_cols=239  Identities=17%  Similarity=0.340  Sum_probs=192.3

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---e
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---V   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~   77 (253)
                      +++.+|++++ | .+++|++..+  ..+....+.+|.     ..|.+++|+ |++++|++|+.|+.|++||+..+.   .
T Consensus        71 p~g~~l~s~s~D~~v~iw~~~~~--~~~~~~~~~~h~-----~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A           71 PCGNYLASASFDATTCIWKKNQD--DFECVTTLEGHE-----NEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECCC---EEEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred             CCCCEEEEEECCCcEEEEEccCC--CeEEEEEccCCC-----CCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence            3567888877 5 9999999763  234677889998     899999999 899999999999999999998653   4


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      +..+.+|...|.+++|+ ++++|++++.|+.|++||+++.+.. .......|...|.+++|+| ++++|++++.|+. |+
T Consensus       143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~-~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~-v~  219 (345)
T 3fm0_A          143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDP-SGQRLASCSDDRT-VR  219 (345)
T ss_dssp             EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECT-TSSEEEEEETTSC-EE
T ss_pred             EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE-EEEEecCCCCceEEEEECC-CCCEEEEEeCCCe-EE
Confidence            56677899999999999 9999999999999999999876422 2334457778999999999 9999999999999 99


Q ss_pred             EEECCCCCC--------------Ceeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC--Cee
Q 035558          157 VLDIRFPTL--------------PVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD--PIL  219 (253)
Q Consensus       157 ~~d~~~~~~--------------~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~  219 (253)
                      +||......              ++..+.+ |...|++++|+|++ ..|++++.|+.|++|+......+......  ...
T Consensus       220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  298 (345)
T 3fm0_A          220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL  298 (345)
T ss_dssp             EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred             EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence            999754321              1223333 88899999999999 59999999999999999865433200000  012


Q ss_pred             eccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558          220 AYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV  253 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l  253 (253)
                      ..+|...|++++|+|+++ .+++++.|+.|++|++
T Consensus       299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred             cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence            247899999999999985 6778999999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-37  Score=239.93  Aligned_cols=234  Identities=18%  Similarity=0.266  Sum_probs=195.7

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++++|++++ + .|++|++..+    +....+.+|.     ..|.+++|+ +++++|++|+.|+.|++||+++++.+..
T Consensus        33 ~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~  102 (312)
T 4ery_A           33 PNGEWLASSSADKLIKIWGAYDG----KFEKTISGHK-----LGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT  102 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTC----CEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCEEEEeeCCCeEEEEeCCCc----ccchhhccCC-----CceEEEEEc-CCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence            3567777777 5 9999999887    7788889998     899999999 8999999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|...|.+++|+ ++++|++++.|+.|++||+++++...   ....+..+|.+++|+| +++++++++.|+. |++||
T Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-i~~wd  177 (312)
T 4ery_A          103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNR-DGSLIVSSSYDGL-CRIWD  177 (312)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEcC-CCCEEEEEeCCCc-EEEEE
Confidence            99999999999999 99999999999999999999887433   3345667999999999 8999999999998 99999


Q ss_pred             CCCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC---------------------------
Q 035558          160 IRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV---------------------------  211 (253)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------------  211 (253)
                      +++.+. +..+ ..+...+..++|+|++ ++|++++.|+.|++||+++++...                           
T Consensus       178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  255 (312)
T 4ery_A          178 TASGQC-LKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG  255 (312)
T ss_dssp             TTTCCE-EEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred             CCCCce-eeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence            998654 4443 4566789999999998 699999999999999987643100                           


Q ss_pred             -----------CCCCCCeeeccCCCceeEEEEcCCCCceEEEE--cCCcEEEEEC
Q 035558          212 -----------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA--FSTKLQILRV  253 (253)
Q Consensus       212 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~i~vw~l  253 (253)
                                 ........+.+|...|.+++|+|+++.+++++  .|+.|++|+.
T Consensus       256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence                       00011234557889999999999998777776  5899999984

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-38  Score=250.57  Aligned_cols=233  Identities=15%  Similarity=0.169  Sum_probs=180.2

Q ss_pred             CCCceEEeec-------C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558            3 QKPDLLATSS-------D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         3 ~~~~~l~~~~-------~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~   74 (253)
                      ++|.+|++++       + .|++|+...+...........+|.     ..|++++|+ +++. +++++.||+|++||+.+
T Consensus        52 pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~-----~~V~~~~~s-~d~~-~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           52 RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE-----AGVTDVAWV-SEKG-ILVASDSGAVELWEILE  124 (357)
T ss_dssp             SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS-----SCEEEEEEE-TTTE-EEEEETTSCEEEC----
T ss_pred             CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC-----CCEEEEEEc-CCCC-EEEEECCCEEEEeeccc
Confidence            4778898887       3 578887766522233344455677     789999999 6665 55678899999999988


Q ss_pred             ceeee----eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           75 EAVDT----QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        75 ~~~~~----~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      ++...    ...+|...|++++|+ ++++|++++.|+.|++||+++++.   +.....|...|.+++|+|....++++++
T Consensus       125 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~---~~~~~~h~~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          125 KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV---LKSYNAHSSEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             ----CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTCSSCEEEEE
T ss_pred             cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE---EEEEcCCCCCEEEEEEccCCCceeeeec
Confidence            76443    234799999999999 999999999999999999998863   3344567779999999995556899999


Q ss_pred             eCCCeEEEEECCCCCCC-eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          150 MDSAKVVVLDIRFPTLP-VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      .|+. |++||+++.+.. ...+..|...+.+++|+|+++.+|++|+.|+.|++||+++++..       ..+.+|...|+
T Consensus       202 ~dg~-v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~-------~~~~~~~~~v~  273 (357)
T 4g56_B          202 EDGR-ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-------QTSAVHSQNIT  273 (357)
T ss_dssp             TTSC-EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC-------EEECCCSSCEE
T ss_pred             cCCc-eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe-------EEEeccceeEE
Confidence            9998 999999986632 22344577789999999987678999999999999999987644       36778999999


Q ss_pred             EEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558          229 QLQWSSSQP-DWVAIAFSTKLQILRV  253 (253)
Q Consensus       229 ~~~~~~~~~-~~~~~~~~~~i~vw~l  253 (253)
                      +++|+|++. ++++++.|+.|+||++
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            999999975 5667899999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.5e-38  Score=245.85  Aligned_cols=230  Identities=14%  Similarity=0.168  Sum_probs=193.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----   75 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----   75 (253)
                      +++.+|++++ | +|++||....    +....+..|.     ..|.+++|+ |++..+++|+.|+.+++|++...     
T Consensus        74 ~d~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~~-----~~v~~~~~s-p~g~~lasg~~d~~i~v~~~~~~~~~~~  143 (354)
T 2pbi_B           74 KDKRRIVSSSQDGKVIVWDSFTT----NKEHAVTMPC-----TWVMACAYA-PSGCAIACGGLDNKCSVYPLTFDKNENM  143 (354)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTC----CEEEEEECSS-----SCCCEEEEC-TTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred             CCCCEEEEEeCCCeEEEEECCCC----CcceEEecCC-----CCEEEEEEC-CCCCEEEEeeCCCCEEEEEEeccccccc
Confidence            3567888887 5 9999999886    6677777887     789999999 89999999999999999998643     


Q ss_pred             -eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC-CCCEEEEEEeCC
Q 035558           76 -AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ-DPRYMATIIMDS  152 (253)
Q Consensus        76 -~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~  152 (253)
                       .....+.+|...|.+++|+ ++..|++++.|++|++||+++++....   ...|...|.+++|+|. ++++|++++.|+
T Consensus       144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg  220 (354)
T 2pbi_B          144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS---FHGHGADVLCLDLAPSETGNTFVSGGCDK  220 (354)
T ss_dssp             GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE---EECCSSCEEEEEECCCSSCCEEEEEETTS
T ss_pred             cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE---EcCCCCCeEEEEEEeCCCCCEEEEEeCCC
Confidence             2445667899999999999 999999999999999999999874433   3466678999999884 468999999999


Q ss_pred             CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          153 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      . |++||+++.. ++..+..|...|++++|+|++ .+|++|+.|++|++||++......     ......+...+.+++|
T Consensus       221 ~-v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          221 K-AMVWDMRSGQ-CVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVA-----IYSKESIIFGASSVDF  292 (354)
T ss_dssp             C-EEEEETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE-----EECCTTCCSCEEEEEE
T ss_pred             e-EEEEECCCCc-EEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEE-----EEcCCCcccceeEEEE
Confidence            9 9999999865 488889999999999999999 699999999999999998764322     0111223457899999


Q ss_pred             cCCCCceEEEEcCCcEEEEEC
Q 035558          233 SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|+++.+++++.|+.|++|++
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEET
T ss_pred             eCCCCEEEEEECCCcEEEEEC
Confidence            999998999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.3e-38  Score=264.41  Aligned_cols=232  Identities=13%  Similarity=0.159  Sum_probs=193.0

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDT   79 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~   79 (253)
                      +++++|+++++ .|++|++..+    +....+.+|.     ..|++++|+ |++++|++|+.||+|+|||+.+++  ...
T Consensus        28 pdg~~l~~~~~~~v~l~~~~~~----~~~~~~~~h~-----~~v~~~~~s-pdg~~lasg~~d~~v~lWd~~~~~~~~~~   97 (611)
T 1nr0_A           28 PAGDKIQYCNGTSVYTVPVGSL----TDTEIYTEHS-----HQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKT   97 (611)
T ss_dssp             TTSSEEEEEETTEEEEEETTCS----SCCEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CCCCEEEeCCCCEEEEecCCCc----ccCeEecCCC-----CceEEEEEC-CCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence            46778888887 9999999876    7788899999     899999999 899999999999999999997543  455


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCC----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC-CEEEEEEeCCC
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSAD----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP-RYMATIIMDSA  153 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~  153 (253)
                      .+.+|.++|.+++|+ +++.|++++.+    +.|++||..  +.   .....+|...|.+++|+| ++ ..|++++.|+.
T Consensus        98 ~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~~---~~~l~gh~~~v~~v~f~p-~~~~~l~s~s~D~~  171 (611)
T 1nr0_A           98 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TS---NGNLTGQARAMNSVDFKP-SRPFRIISGSDDNT  171 (611)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CB---CBCCCCCSSCEEEEEECS-SSSCEEEEEETTSC
T ss_pred             eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--CC---cceecCCCCCceEEEECC-CCCeEEEEEeCCCe
Confidence            678899999999999 99999998875    478888853  32   223457778999999999 55 46999999998


Q ss_pred             eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                       |++||.+..+ ....+.+|...|++++|+|++ ++|++++.|++|++||+.+++.............+|...|.+++|+
T Consensus       172 -v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s  248 (611)
T 1nr0_A          172 -VAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS  248 (611)
T ss_dssp             -EEEEETTTBE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred             -EEEEECCCCe-EeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence             9999987654 477889999999999999999 6999999999999999987764320000001122799999999999


Q ss_pred             CCCCceEEEEcCCcEEEEEC
Q 035558          234 SSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       234 ~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |+++.+++++.|+.|++|++
T Consensus       249 pdg~~l~s~s~D~~v~lWd~  268 (611)
T 1nr0_A          249 PDGTKIASASADKTIKIWNV  268 (611)
T ss_dssp             TTSSEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEeCCCeEEEEeC
Confidence            99999999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.8e-38  Score=265.13  Aligned_cols=235  Identities=17%  Similarity=0.306  Sum_probs=197.6

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      +|+++++|++|+ | +|++|++...... ......+.+|.     ..|.+++|+ +++++|++|+.||.|++||+.+++.
T Consensus       391 ~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~s-~~g~~l~sgs~Dg~v~vwd~~~~~~  464 (694)
T 3dm0_A          391 PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS-----HFVEDVVLS-SDGQFALSGSWDGELRLWDLAAGVS  464 (694)
T ss_dssp             CTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC-----CcEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCcc
Confidence            366778999988 5 9999999764221 13456788998     899999999 8999999999999999999999999


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeE
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKV  155 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i  155 (253)
                      ...+.+|...|.+++|+ ++++|++++.|++|++||+..............|...|.+++|+|.. ...+++++.|+. |
T Consensus       465 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-v  543 (694)
T 3dm0_A          465 TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT-V  543 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC-E
T ss_pred             eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe-E
Confidence            99999999999999999 99999999999999999987654333333334677789999999933 258999999998 9


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      ++||+++.. ....+.+|...|++++|+|++ ++|++|+.||+|++||+++++..        ....+...|.+++|+|+
T Consensus       544 ~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~--------~~~~~~~~v~~~~~sp~  613 (694)
T 3dm0_A          544 KVWNLSNCK-LRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL--------YSLEANSVIHALCFSPN  613 (694)
T ss_dssp             EEEETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE--------ECCBCSSCEEEEEECSS
T ss_pred             EEEECCCCc-EEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE--------EEecCCCcEEEEEEcCC
Confidence            999999865 477889999999999999999 69999999999999999887633        23345678999999999


Q ss_pred             CCceEEEEcCCcEEEEEC
Q 035558          236 QPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw~l  253 (253)
                      +. +++++.++.|++|++
T Consensus       614 ~~-~l~~~~~~~i~iwd~  630 (694)
T 3dm0_A          614 RY-WLCAATEHGIKIWDL  630 (694)
T ss_dssp             SS-EEEEEETTEEEEEET
T ss_pred             Cc-EEEEEcCCCEEEEEC
Confidence            85 677777888999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5.4e-38  Score=252.80  Aligned_cols=245  Identities=21%  Similarity=0.358  Sum_probs=196.6

Q ss_pred             CCCCceEEeecC--cEEEEEccCC------ccccceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEeCCCeEEEEec
Q 035558            2 CQKPDLLATSSD--FLRVWRISDE------DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSSIDTTCTIWDI   72 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~   72 (253)
                      |+++.+|++++.  .|++|++...      .........+.+|.     ..|++++|+ +++. +|++|+.||.|++|++
T Consensus       138 p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~  211 (430)
T 2xyi_A          138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----KEGYGLSWN-PNLNGYLLSASDDHTICLWDI  211 (430)
T ss_dssp             TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----SCCCCEEEC-TTSTTEEEEECTTSCEEEEET
T ss_pred             CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----CCeEEEEeC-CCCCCeEEEEeCCCeEEEEeC
Confidence            556788998884  9999999761      01136677788898     899999999 5655 9999999999999999


Q ss_pred             cCcee-------eeeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558           73 EREAV-------DTQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR  143 (253)
Q Consensus        73 ~~~~~-------~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  143 (253)
                      ..+..       ...+.+|...|.+++|+  ++.+|++++.||.|++||+++............+...|++++|+|....
T Consensus       212 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  291 (430)
T 2xyi_A          212 NATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF  291 (430)
T ss_dssp             TSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT
T ss_pred             CCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC
Confidence            87321       44566899999999999  6789999999999999999987422233333466679999999994445


Q ss_pred             EEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC-------CCC
Q 035558          144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-------GLD  216 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~  216 (253)
                      ++++++.++. |++||+++...++..+..|...|.+++|+|++..+|++++.||.|++||+.........       ...
T Consensus       292 ~l~tg~~dg~-v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  370 (430)
T 2xyi_A          292 ILATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL  370 (430)
T ss_dssp             EEEEEETTSE-EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred             EEEEEeCCCe-EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence            7889999988 99999998777788999999999999999998667999999999999999874321100       011


Q ss_pred             CeeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558          217 PILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV  253 (253)
Q Consensus       217 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l  253 (253)
                      .....+|...|++++|+|+++ .+++++.|+.|++|++
T Consensus       371 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             EEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             EEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            234457889999999999998 6778999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-38  Score=243.19  Aligned_cols=236  Identities=19%  Similarity=0.294  Sum_probs=180.5

Q ss_pred             CCceEEeec-C-cEEEEEccCCc---cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc---
Q 035558            4 KPDLLATSS-D-FLRVWRISDED---RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE---   75 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---   75 (253)
                      ++.+|++++ | +|++|++....   ...+....+.+|.     ..|.+++|+ |++++|++|+.|++|++||+...   
T Consensus        69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----NEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred             CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----CcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCC
Confidence            567788877 5 99999986421   1235667788998     899999999 88999999999999999999432   


Q ss_pred             -eeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCC
Q 035558           76 -AVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDS  152 (253)
Q Consensus        76 -~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~  152 (253)
                       +.+..+.+|...|.+++|+ ++.+|++++.|++|++||.+++.. ..+.....|...|.+++|+|.. +.+|++++.|+
T Consensus       143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~  221 (330)
T 2hes_X          143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS  221 (330)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred             eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence             4567788999999999999 999999999999999999876531 2334445777899999999932 56899999999


Q ss_pred             CeEEEEECCCCC-------CCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          153 AKVVVLDIRFPT-------LPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       153 ~~i~~~d~~~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      . |++||++...       .....+.. |...|.+++|++++  +|++++.||.|++||...+....    ......+|.
T Consensus       222 ~-v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~h~  294 (330)
T 2hes_X          222 T-VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKV----FAKRALCHG  294 (330)
T ss_dssp             C-EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEE----EEEESCTTT
T ss_pred             e-EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEE----Eeccccccc
Confidence            8 9999997542       12333444 88999999999764  89999999999999987653111    001234677


Q ss_pred             C-ceeEEEEcC--CCCceEEEEcCCcEEEEEC
Q 035558          225 A-EIEQLQWSS--SQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       225 ~-~v~~~~~~~--~~~~~~~~~~~~~i~vw~l  253 (253)
                      . .|.+++|+|  +++.|++++.|+.|++|++
T Consensus       295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          295 VYEINVVKWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             TSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred             cceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence            6 899999999  6778889999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-37  Score=249.82  Aligned_cols=233  Identities=16%  Similarity=0.203  Sum_probs=194.9

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ++++.+|++++ + .|++||+..+    +....+.+|.     ..|++++|+ +++++|++|+.|+.|++||+++++.+.
T Consensus       106 ~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~  175 (420)
T 3vl1_A          106 KLQMRRFILGTTEGDIKVLDSNFN----LQREIDQAHV-----SEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPR  175 (420)
T ss_dssp             CSSSCEEEEEETTSCEEEECTTSC----EEEEETTSSS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred             ecCCCEEEEEECCCCEEEEeCCCc----ceeeeccccc-----CccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence            35677888877 4 9999999986    7777788998     899999999 789999999999999999999999999


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC---------------------CCeeEEEe
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD---------------------TPLVRLGW  137 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------------~~i~~~~~  137 (253)
                      .+.+|...|.+++|+ ++++|++++.||.|++||+++++....+.....+.                     ..+.+++|
T Consensus       176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (420)
T 3vl1_A          176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF  255 (420)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred             EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence            999999999999999 99999999999999999999887555544333333                     34555566


Q ss_pred             eCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC
Q 035558          138 NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP  217 (253)
Q Consensus       138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  217 (253)
                      +| +++++++++.++. |++||+++..........|...|.+++|+|++..+|++|+.||.|++||++++..+.      
T Consensus       256 s~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~------  327 (420)
T 3vl1_A          256 GT-YGKYVIAGHVSGV-ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV------  327 (420)
T ss_dssp             SC-TTEEEEEEETTSC-EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS------
T ss_pred             cC-CCCEEEEEcCCCe-EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch------
Confidence            77 8899999999999 999999987653444456889999999999994499999999999999999876543      


Q ss_pred             eeecc-CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          218 ILAYT-AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       218 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..... |...|..+.|. +++.+++++.|+.+++|++
T Consensus       328 ~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          328 GEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             EEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEE
T ss_pred             hhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEec
Confidence            34444 77888888665 6667889999999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-37  Score=260.08  Aligned_cols=232  Identities=16%  Similarity=0.197  Sum_probs=191.4

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |..+.+|++++ | +|++||....    +....+.+|.     ..|.+++|+ |++++|++|+.|++|++||+.+++.+.
T Consensus       157 p~~~~~l~s~s~D~~v~lwd~~~~----~~~~~l~~H~-----~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~  226 (611)
T 1nr0_A          157 PSRPFRIISGSDDNTVAIFEGPPF----KFKSTFGEHT-----KFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTG  226 (611)
T ss_dssp             SSSSCEEEEEETTSCEEEEETTTB----EEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCCeEEEEEeCCCeEEEEECCCC----eEeeeecccc-----CceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEee
Confidence            55555678777 5 9999998876    7788899999     899999999 899999999999999999999988877


Q ss_pred             eee-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee-----------------------------
Q 035558           80 QLI-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII-----------------------------  122 (253)
Q Consensus        80 ~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------------------------  122 (253)
                      .+.       +|.+.|.+++|+ ++++|++++.|++|++||+++++....+                             
T Consensus       227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence            774       799999999999 9999999999999999999876533221                             


Q ss_pred             -----------eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee-c-------------------
Q 035558          123 -----------YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL-Q-------------------  171 (253)
Q Consensus       123 -----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~-------------------  171 (253)
                                 ....+|...|.+++|+| ++++|++++.|+. |++||+.+... ...+ .                   
T Consensus       307 ~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~-v~~Wd~~~~~~-~~~~~~~h~~~v~~~~~s~~~~l~s  383 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGH-INSWDISTGIS-NRVFPDVHATMITGIKTTSKGDLFT  383 (611)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTTCCE-EECSSCSCSSCEEEEEECTTSCEEE
T ss_pred             EEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCc-EEEEECCCCce-eeecccCCcceEEEEEECCCCcEEE
Confidence                       12235777999999999 9999999999998 99999875431 0000 0                   


Q ss_pred             --------------------------------------------------------------ccccceeEEEEecCCCCe
Q 035558          172 --------------------------------------------------------------RHQASVNAIAWAPHSSCH  189 (253)
Q Consensus       172 --------------------------------------------------------------~~~~~i~~~~~~~~~~~~  189 (253)
                                                                                    .|...+.+++|+|++ ++
T Consensus       384 ~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg-~~  462 (611)
T 1nr0_A          384 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK-QF  462 (611)
T ss_dssp             EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS-CE
T ss_pred             EEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC-CE
Confidence                                                                          123457789999999 69


Q ss_pred             EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |++|+.|++|++||+.......      ....+|...|++++|+|+++++++++.|+.+++|++
T Consensus       463 lasgs~D~~v~lwd~~~~~~~~------~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~  520 (611)
T 1nr0_A          463 VAVGGQDSKVHVYKLSGASVSE------VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV  520 (611)
T ss_dssp             EEEEETTSEEEEEEEETTEEEE------EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred             EEEeCCCCeEEEEEccCCceee------eeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence            9999999999999998753211      123679999999999999999999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.7e-37  Score=239.45  Aligned_cols=210  Identities=18%  Similarity=0.221  Sum_probs=182.4

Q ss_pred             cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-----eeeeeeecccccEEEEEec-CCCe
Q 035558           25 RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-----AVDTQLIAHDKEVYDIAWG-GVGV   98 (253)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~-~~~~   98 (253)
                      +.+.+..++++|.     ++|++++|+|.++++|++|+.|++|++|++...     ..+..+.+|...|.+++|+ ++++
T Consensus         5 ~~~~l~~~l~gH~-----~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~   79 (319)
T 3frx_A            5 EVLVLRGTLEGHN-----GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY   79 (319)
T ss_dssp             EEEEEEEEECCCS-----SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             eEEEEEEEEcccc-----ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE
Confidence            3456778899999     999999999556689999999999999998642     3567788999999999999 9999


Q ss_pred             EEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee
Q 035558           99 FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN  178 (253)
Q Consensus        99 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~  178 (253)
                      |++++.|++|++||+++++..   .....|...|.+++|+| ++.++++++.|+. |++||++.  .++..+.+|...|.
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~---~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~-i~vwd~~~--~~~~~~~~h~~~v~  152 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETY---QRFVGHKSDVMSVDIDK-KASMIISGSRDKT-IKVWTIKG--QCLATLLGHNDWVS  152 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEECT-TSCEEEEEETTSC-EEEEETTS--CEEEEECCCSSCEE
T ss_pred             EEEEeCCCEEEEEECCCCCee---EEEccCCCcEEEEEEcC-CCCEEEEEeCCCe-EEEEECCC--CeEEEEeccCCcEE
Confidence            999999999999999988743   33446777999999999 9999999999999 99999974  34788889999999


Q ss_pred             EEEEecCC-----CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          179 AIAWAPHS-----SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       179 ~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +++|.|..     ..+|++++.|+.|++||++.....       ..+.+|...|.+++|+|+++++++++.|+.|++|++
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL  225 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTTTEEE-------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            99999853     148999999999999999876533       366789999999999999999999999999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-38  Score=250.23  Aligned_cols=234  Identities=16%  Similarity=0.225  Sum_probs=182.1

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---e
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---V   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~   77 (253)
                      +++.+|++++ + .|++|++..+  ..+....+.+|.     ..|.+++|+ +++++|++++.|+.|++||+++++   .
T Consensus        21 ~~g~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~h~-----~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           21 SQRTEFVTTTATNQVELYEQDGN--GWKHARTFSDHD-----KIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             SSSSEEECCCSSSCBCEEEEETT--EEEECCCBCCCS-----SCEEEEEEC-TTTCCEEEEETTSSEEEC------CCCC
T ss_pred             CCCCEEEEecCCCEEEEEEccCC--ceEEEEEEecCC-----ceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence            3677888886 5 9999999873  235677788898     899999999 889999999999999999999877   5


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC-CCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE-PDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ...+..|...|.+++|+ ++++|++++.|+.|++||+++.+.......... |...|.+++|+| ++++|++++.|+. |
T Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~-i  170 (377)
T 3dwl_C           93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRK-A  170 (377)
T ss_dssp             EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSC-E
T ss_pred             eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCE-E
Confidence            66677899999999999 999999999999999999998764222333333 677999999999 8999999999999 9


Q ss_pred             EEEECCCCC-----------------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558          156 VVLDIRFPT-----------------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI  218 (253)
Q Consensus       156 ~~~d~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  218 (253)
                      ++||++...                 .++..+ .|...|.+++|+|++ ++|++++.||.|++||+++...+.   ....
T Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~---~~~~  245 (377)
T 3dwl_C          171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPP---RALI  245 (377)
T ss_dssp             EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCE---EECC
T ss_pred             EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcc---eeeE
Confidence            999986321                 123444 889999999999999 699999999999999999887521   0013


Q ss_pred             eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          219 LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ...+|..+|.+++|+|+++.+ +++.++.+.+|+
T Consensus       246 ~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~  278 (377)
T 3dwl_C          246 TVKLSQLPLRSLLWANESAIV-AAGYNYSPILLQ  278 (377)
T ss_dssp             CEECSSSCEEEEEEEETTEEE-EEESSSSEEEEC
T ss_pred             eecCCCCceEEEEEcCCCCEE-EEEcCCcEEEEE
Confidence            667899999999999999754 555566666775

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-37  Score=244.49  Aligned_cols=238  Identities=11%  Similarity=0.153  Sum_probs=192.3

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC----CCEEEEEeCCCeEEEEeccCceeee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE----PRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ..+++++++ .|++|++..+    +....+..|....+...|++++|+ ++    +.+|++|+.||.|++||+++++.+.
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  109 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQ----GEIRLLQSYVDADADENFYTCAWT-YDSNTSHPLLAVAGSRGIIRIINPITMQCIK  109 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGG----GCEEEEEEEECSCTTCCEEEEEEE-ECTTTCCEEEEEEETTCEEEEECTTTCCEEE
T ss_pred             ceEEEECCCCEEEEEEcCCC----cEEEeeeeccccCCCCcEEEEEec-cCCCCCCCEEEEecCCCEEEEEEchhceEee
Confidence            346666767 9999999976    555566655443344789999999 55    5799999999999999999999999


Q ss_pred             eeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+.+|...|.+++|+  ++++|++++.||.|++||+++++....+.....+...|.+++|+| ++++|++++.|+. |++
T Consensus       110 ~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~-i~i  187 (366)
T 3k26_A          110 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHS-LKL  187 (366)
T ss_dssp             EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSC-EEE
T ss_pred             eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCC-EEE
Confidence            999999999999999  688999999999999999998875544433356778999999999 8999999999988 999


Q ss_pred             EECCCCCC------------------------------------------------------------------------
Q 035558          158 LDIRFPTL------------------------------------------------------------------------  165 (253)
Q Consensus       158 ~d~~~~~~------------------------------------------------------------------------  165 (253)
                      ||+++...                                                                        
T Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  267 (366)
T 3k26_A          188 WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDK  267 (366)
T ss_dssp             EESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred             EECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccc
Confidence            99874310                                                                        


Q ss_pred             ---------CeeeecccccceeEEEEecC--CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC--CCceeEEEE
Q 035558          166 ---------PVVELQRHQASVNAIAWAPH--SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA--GAEIEQLQW  232 (253)
Q Consensus       166 ---------~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~  232 (253)
                               .+..+..|...|++++|+|+  + ++|++++.||.|++||+..++...   .....+..|  ...|++++|
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHK---AKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             CCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGG---CEEEEECCTTCCSCEEEEEE
T ss_pred             cccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCcc---ccceEEcccccCCceEEEEe
Confidence                     02333446667888889998  7 699999999999999998865321   111244455  799999999


Q ss_pred             cCCCCceEEEEcCCcEEEEEC
Q 035558          233 SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|+++.+++++.|+.|++|++
T Consensus       344 s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          344 SRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCCCeEEEEeCCCEEEEEEe
Confidence            999999999999999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.7e-37  Score=256.24  Aligned_cols=221  Identities=17%  Similarity=0.315  Sum_probs=192.5

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ + .|++|+...     +....+.+|.     ..|.+++|+ +++++|++++.|+.|++||. +++.+..
T Consensus       354 ~~g~~l~~~~~dg~v~~~~~~~-----~~~~~~~~~~-----~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~-~~~~~~~  421 (577)
T 2ymu_A          354 PDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHS-----SSVRGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQT  421 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEETTC-----CEEEEEECCS-----SCEEEEEEC-TTSSCEEEEETTSEEEEECT-TCCEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEcCCC-----CEEEEecCCC-----CCeEEEEEC-CCCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence            4677888877 4 999999765     6778888998     899999999 89999999999999999996 4677888


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|...|++++|+ ++++|++++.|+.|++||... +   .+.....+...|.+++|+| ++++|++++.|+. |++||
T Consensus       422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~---~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~-i~iw~  495 (577)
T 2ymu_A          422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q---LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT-VKLWN  495 (577)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C---EEEEEECCSSCEEEEEECT-TSCEEEEEETTSE-EEEEE
T ss_pred             ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C---EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCE-EEEEc
Confidence            89999999999999 999999999999999999754 3   2333346677999999999 9999999999998 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ..  ...+..+.+|...|++++|+|++ ++|++++.||.|++||.. ++.       ...+.+|..+|++++|+|++++|
T Consensus       496 ~~--~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~-~~~-------~~~~~~h~~~v~~~~fs~dg~~l  564 (577)
T 2ymu_A          496 RN--GQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL-------LQTLTGHSSSVWGVAFSPDGQTI  564 (577)
T ss_dssp             TT--SCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-SCE-------EEEEECCSSCEEEEEECTTSSCE
T ss_pred             CC--CCEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC-CCE-------EEEEcCCCCCEEEEEEcCCCCEE
Confidence            64  33578899999999999999999 699999999999999964 332       24677899999999999999999


Q ss_pred             EEEEcCCcEEEEE
Q 035558          240 VAIAFSTKLQILR  252 (253)
Q Consensus       240 ~~~~~~~~i~vw~  252 (253)
                      ++++.|+.|++|+
T Consensus       565 ~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          565 ASASSDKTVKLWN  577 (577)
T ss_dssp             EEEETTSCEEEEC
T ss_pred             EEEeCCCEEEEeC
Confidence            9999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-38  Score=257.41  Aligned_cols=231  Identities=12%  Similarity=0.109  Sum_probs=179.2

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-----CCCEEEEEeCCCeEEEEeccCcee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-----EPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      +.++++++ | +|+||++..+.........+.+|.     +.|.+++|+|.     ++.+||+++.||+|++||+..++.
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~-----~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~  247 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF-----GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT  247 (524)
T ss_dssp             ---------CEEEEEEEEETTTCCEEEEEEEEECC-----CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred             hhhhccCCCCceEEEEEccCCCCCceEEEEEEecC-----CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence            44556666 4 999999987511112234466777     78999999953     257999999999999999976542


Q ss_pred             -----------eeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEE--EeeCCCC-C
Q 035558           78 -----------DTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRL--GWNKQDP-R  143 (253)
Q Consensus        78 -----------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~-~  143 (253)
                                 ...+.+|...|++++|+.+..|++|+.||+|++||++++..+..  ....|...|.++  +|+| ++ .
T Consensus       248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~--~~~~H~~~V~sv~~~~s~-~g~~  324 (524)
T 2j04_B          248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSF--YDQVHDSYILSVSTAYSD-FEDT  324 (524)
T ss_dssp             SSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSE--EEECSSSCEEEEEEECCT-TSCC
T ss_pred             ccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceE--EeecccccEEEEEEEcCC-CCCe
Confidence                       23567899999999999445899999999999999997643222  223567799999  5666 76 8


Q ss_pred             EEEEEEeCCCeEEEEECCCCCCCeeeeccccc--ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558          144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY  221 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  221 (253)
                      +|++++.|+. |++||+++.+. ...+.+|..  .|.+++|+|++ +.|++++.|++|++||++.+....       .+.
T Consensus       325 ~laS~S~D~t-vklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~-------~l~  394 (524)
T 2j04_B          325 VVSTVAVDGY-FYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVH-------PLV  394 (524)
T ss_dssp             EEEEEETTSE-EEEECGGGHHH-HCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCE-------EEE
T ss_pred             EEEEeccCCe-EEEEECCCCCc-ccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccce-------eee
Confidence            9999999998 99999987553 455556653  48899999998 589999999999999999876443       667


Q ss_pred             cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          222 TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       222 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|...|++|+|+|+++.+++++.|+.|++|++
T Consensus       395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          395 SRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             ECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             cCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            89999999999999999999999999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-37  Score=241.89  Aligned_cols=238  Identities=19%  Similarity=0.301  Sum_probs=197.1

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC--CCEEEEEeCCCeEEEEeccCce--
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE--PRRIGTSSIDTTCTIWDIEREA--   76 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--   76 (253)
                      +++.+|++++ + .|++|++...  ..+....+.+|.     .+|++++|+ ++  +++|++|+.||.|++||+++++  
T Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h~-----~~v~~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~   92 (379)
T 3jrp_A           21 YYGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHE-----GPVWRVDWA-HPKFGTILASCSYDGKVLIWKEENGRWS   92 (379)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCS-----SCEEEEEEC-CGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCCEEEEEECCCcEEEEecCCC--cceeeeEecCCC-----CcEEEEEeC-CCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence            3567788876 5 9999999842  236777888998     899999998 44  8999999999999999999887  


Q ss_pred             eeeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC------------C
Q 035558           77 VDTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ------------D  141 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~  141 (253)
                      .+..+..|...|.+++|+ +  +.+|++++.|+.|++||+++....... ....+...|.+++|+|.            +
T Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (379)
T 3jrp_A           93 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE  171 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEEEEEECCCC----------CT
T ss_pred             EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceEEEEEcCccccccccccCCCC
Confidence            677778899999999999 7  899999999999999999987543332 22356669999999995            5


Q ss_pred             CCEEEEEEeCCCeEEEEECCCCCC---CeeeecccccceeEEEEecC---CCCeEEEecCCCcEEEEeccCCCCCCCCCC
Q 035558          142 PRYMATIIMDSAKVVVLDIRFPTL---PVVELQRHQASVNAIAWAPH---SSCHICTAGDDSQALIWDLSSMGQPVEGGL  215 (253)
Q Consensus       142 ~~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  215 (253)
                      +.++++++.|+. |++||++....   ....+..|...|.+++|+|+   + .+|++++.||.|++||++....+..  .
T Consensus       172 ~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~--~  247 (379)
T 3jrp_A          172 SRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK--K  247 (379)
T ss_dssp             TCEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSCCE--E
T ss_pred             CCEEEEEeCCCe-EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCccce--e
Confidence            899999999998 99999987653   24567789999999999999   6 7999999999999999998753320  0


Q ss_pred             CCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          216 DPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       216 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .......|...|.+++|+|+++++++++.|+.+++|++
T Consensus       248 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          248 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            01122348889999999999999999999999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-36  Score=234.67  Aligned_cols=208  Identities=17%  Similarity=0.296  Sum_probs=185.1

Q ss_pred             cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558           27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD  105 (253)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  105 (253)
                      ......+.+|.     .+|++++|+ +++++|++|+.||.|++|++.+++....+.+|...|.+++|+ ++++|++++.|
T Consensus        13 ~~~~~~~~gh~-----~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           13 YALKFTLAGHT-----KAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD   86 (312)
T ss_dssp             CEEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeEEEEcccC-----CcEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC
Confidence            35667788998     899999999 899999999999999999999999999999999999999999 99999999999


Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH  185 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  185 (253)
                      +.|++||+++++....+   ..+...|.+++|+| +++++++++.|+. |++||+++.+ .+..+..|..+|.+++|+|+
T Consensus        87 ~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~l~s~~~d~~-i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTL---KGHSNYVFCCNFNP-QSNLIVSGSFDES-VRIWDVKTGK-CLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             SEEEEEETTTCCEEEEE---ECCSSCEEEEEECS-SSSEEEEEETTSC-EEEEETTTCC-EEEEECCCSSCEEEEEECTT
T ss_pred             CEEEEEECCCCcEEEEE---cCCCCCEEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCE-EEEEecCCCCcEEEEEEcCC
Confidence            99999999988744333   45667899999999 8999999999999 9999999865 47888899999999999999


Q ss_pred             CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      + .+|++++.||.|++||+++.+...      .....+..++..++|+|+++++++++.|+.|++|++
T Consensus       161 ~-~~l~~~~~d~~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          161 G-SLIVSSSYDGLCRIWDTASGQCLK------TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCCEEE------EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             C-CEEEEEeCCCcEEEEECCCCceee------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            9 699999999999999999876432      233456778999999999999999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.9e-36  Score=236.93  Aligned_cols=232  Identities=20%  Similarity=0.290  Sum_probs=183.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.++++++ | +|++||+.++    +....+.+|.     ..|.+++|+ |++++|++|+.|+.|++||+........
T Consensus        86 ~~~~~l~s~s~D~~v~lwd~~~~----~~~~~~~~h~-----~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~~~~~~  155 (343)
T 2xzm_R           86 QENCFAISSSWDKTLRLWDLRTG----TTYKRFVGHQ-----SEVYSVAFS-PDNRQILSAGAEREIKLWNILGECKFSS  155 (343)
T ss_dssp             SSTTEEEEEETTSEEEEEETTSS----CEEEEEECCC-----SCEEEEEEC-SSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEECCCC----cEEEEEcCCC-----CcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCCceeee
Confidence            3566777877 5 9999999987    7888899999     899999999 8999999999999999999974432221


Q ss_pred             --eecccccEEEEEec-CC----------CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEE
Q 035558           81 --LIAHDKEVYDIAWG-GV----------GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT  147 (253)
Q Consensus        81 --~~~~~~~v~~~~~~-~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  147 (253)
                        ...|...|.+++|+ ++          .+|++++.||.|++||... +   .......|...|.+++|+| ++++|++
T Consensus       156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~~~h~~~v~~~~~s~-~g~~l~s  230 (343)
T 2xzm_R          156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q---IRYTFKAHESNVNHLSISP-NGKYIAT  230 (343)
T ss_dssp             CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E---EEEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred             ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c---eeEEEcCccccceEEEECC-CCCEEEE
Confidence              22688999999999 54          6899999999999999432 2   2333446777999999999 9999999


Q ss_pred             EEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC--CCCCCC----eeec
Q 035558          148 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV--EGGLDP----ILAY  221 (253)
Q Consensus       148 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~----~~~~  221 (253)
                      ++.|+. |++||++....+...+ .+...|.+++|+|++ .+++ ++.|+.|++||+.+.....  .....+    ....
T Consensus       231 gs~dg~-v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  306 (343)
T 2xzm_R          231 GGKDKK-LLIWDILNLTYPQREF-DAGSTINQIAFNPKL-QWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK  306 (343)
T ss_dssp             EETTCE-EEEEESSCCSSCSEEE-ECSSCEEEEEECSSS-CEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred             EcCCCe-EEEEECCCCcccceee-cCCCcEEEEEECCCC-CEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence            999998 9999996655444444 345679999999998 4665 4568899999998765321  000000    0123


Q ss_pred             cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          222 TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       222 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|...|.+++|+|+++.+++++.|+.|++|++
T Consensus       307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             CSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             CCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence            68889999999999999999999999999984

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.2e-37  Score=244.07  Aligned_cols=228  Identities=11%  Similarity=0.120  Sum_probs=179.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe--CCCeEEEEeccCceeeeeeecccccEEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS--IDTTCTIWDIEREAVDTQLIAHDKEVYDI   91 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~   91 (253)
                      .+|+|++.......+.....+..........+.+++|+ |+++++++++  .|++|++||+++++.+..+. |...|.++
T Consensus       105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v  182 (365)
T 4h5i_A          105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDL  182 (365)
T ss_dssp             CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEE
T ss_pred             cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEE
Confidence            89999987753333333333333222222568999999 8999877554  78999999999999888876 78899999


Q ss_pred             Eec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC---eEEEEECCCCCC--
Q 035558           92 AWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA---KVVVLDIRFPTL--  165 (253)
Q Consensus        92 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~~--  165 (253)
                      +|+ +++++++++.+ .+++|+..+++.... .....+...+.+++|+| ++.++++++.++.   .++.||+.....  
T Consensus       183 ~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~  259 (365)
T 4h5i_A          183 HFSTDGKVVAYITGS-SLEVISTVTGSCIAR-KTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSV  259 (365)
T ss_dssp             EECTTSSEEEEECSS-CEEEEETTTCCEEEE-ECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEE
T ss_pred             EEccCCceEEeccce-eEEEEEeccCcceee-eecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecc
Confidence            999 99999999855 567777776653322 23345666899999999 9999999998873   478888876542  


Q ss_pred             -CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          166 -PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       166 -~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                       ....+..|...|++++|+|++ ++|++|+.|++|+|||+++++...      ....+|..+|++|+|+|++++|++++.
T Consensus       260 ~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~~~------~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          260 LRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSMSK------IFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             EEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEE------EETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             eeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcEEE------EecCcccCCEEEEEECCCCCEEEEEeC
Confidence             134567889999999999999 699999999999999999876433      234689999999999999999999999


Q ss_pred             CCcEEEEEC
Q 035558          245 STKLQILRV  253 (253)
Q Consensus       245 ~~~i~vw~l  253 (253)
                      |+.|+||+|
T Consensus       333 D~tvrvw~i  341 (365)
T 4h5i_A          333 ANTIHIIKL  341 (365)
T ss_dssp             TSEEEEEEC
T ss_pred             CCeEEEEEc
Confidence            999999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.5e-36  Score=236.70  Aligned_cols=244  Identities=17%  Similarity=0.279  Sum_probs=196.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCc-----
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIERE-----   75 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-----   75 (253)
                      ++.+|++++ + .|++|++..+....+....+.+|.     .+|++++|+|. ++++|++|+.||.|++||++++     
T Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~   96 (351)
T 3f3f_A           22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS   96 (351)
T ss_dssp             SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred             CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC-----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence            567778777 5 999999987534446777888998     89999999943 6899999999999999999876     


Q ss_pred             ----eeeeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeee----------ccCCCCCCeeEEEee
Q 035558           76 ----AVDTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIY----------ESSEPDTPLVRLGWN  138 (253)
Q Consensus        76 ----~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~i~~~~~~  138 (253)
                          +.+..+..|...|.+++|+ +  +.++++++.||.|++||+++.+......          ....+...+.+++|+
T Consensus        97 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (351)
T 3f3f_A           97 GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC  176 (351)
T ss_dssp             SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEEC
T ss_pred             ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEec
Confidence                4577778899999999999 7  9999999999999999999876433221          122456689999999


Q ss_pred             CC--CCCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEEEecCCC---CeEEEecCCCcEEEEeccCCCCCCC
Q 035558          139 KQ--DPRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSS---CHICTAGDDSQALIWDLSSMGQPVE  212 (253)
Q Consensus       139 ~~--~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~  212 (253)
                      |.  ++.++++++.++. +.+|+..... ..+..+.+|...|++++|+|+++   .+|++++.||.|++||++....+..
T Consensus       177 p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  255 (351)
T 3f3f_A          177 PSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA  255 (351)
T ss_dssp             CCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred             cCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence            93  3889999999887 8777766544 23667788999999999999973   4899999999999999987532110


Q ss_pred             C---------------------------------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          213 G---------------------------------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       213 ~---------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .                                       ........+|...|++++|+|+++++++++.|+.|++|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             -----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence            0                                       0112334578999999999999999999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.3e-37  Score=234.13  Aligned_cols=213  Identities=19%  Similarity=0.298  Sum_probs=175.8

Q ss_pred             eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC--ceeeeeeecccccEEEEEec-C--CCeEEEEeC
Q 035558           30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER--EAVDTQLIAHDKEVYDIAWG-G--VGVFASVSA  104 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~  104 (253)
                      +..+.+|.     ..|++++|+ +++++|++|+.|++|++||+..  .+.+..+.+|.++|.+++|+ +  +++|++|+.
T Consensus         2 ~~~~~~h~-----~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B            2 VVIANAHN-----EMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             CEECCSCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             ceeccCCc-----CceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence            34567888     899999999 8999999999999999999974  35778889999999999997 3  789999999


Q ss_pred             CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCCC-CeeeecccccceeEEEE
Q 035558          105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQASVNAIAW  182 (253)
Q Consensus       105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~  182 (253)
                      |++|++||+++++.. .+.....|...|.+++|+|.. +.+|++++.|+. |++||++.... ....+.+|...|.+++|
T Consensus        76 D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~-v~~wd~~~~~~~~~~~~~~h~~~v~~~~~  153 (297)
T 2pm7_B           76 DGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK-VSVVEFKENGTTSPIIIDAHAIGVNSASW  153 (297)
T ss_dssp             TTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE-EEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred             CCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc-EEEEEecCCCceeeeeeecccCccceEee
Confidence            999999999876421 122234567799999999932 789999999998 99999987542 24567789999999999


Q ss_pred             ecCC------------CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC---CceEEEEcCCc
Q 035558          183 APHS------------SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ---PDWVAIAFSTK  247 (253)
Q Consensus       183 ~~~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~  247 (253)
                      +|++            .++|++|+.|++|++||++......   .....+.+|...|.+++|+|++   .++++++.|+.
T Consensus       154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~---~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY---VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             CCCC------------CCEEEEEETTSCEEEEEEETTTTEE---EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE---EEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence            9973            2589999999999999998765321   0113566899999999999985   67889999999


Q ss_pred             EEEEEC
Q 035558          248 LQILRV  253 (253)
Q Consensus       248 i~vw~l  253 (253)
                      |++|++
T Consensus       231 v~iWd~  236 (297)
T 2pm7_B          231 CIIWTQ  236 (297)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.7e-36  Score=232.46  Aligned_cols=225  Identities=16%  Similarity=0.227  Sum_probs=195.9

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++++|++++ + .|++|++..+  .......+..|.     ..|.+++|+ ++++++++++.||.|++||+++++.+..+
T Consensus       108 ~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~-----~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          108 DGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSA-----PACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC----EEEEEEECSS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCC--CcceeeecccCC-----CceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence            566677766 5 9999999885  123566777888     889999999 79999999999999999999999999999


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      ..|...|.+++|+ +++.|++++.||.|++||+++++.....    .+...+.+++|+| +++++++++.++. |++||+
T Consensus       180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~-~~~~l~~~~~~~~-i~~~~~  253 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCP-TGEWLAVGMESSN-VEVLHV  253 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECT-TSSEEEEEETTSC-EEEEET
T ss_pred             ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----cCCCceEEEEECC-CCCEEEEEcCCCc-EEEEEC
Confidence            9999999999999 9999999999999999999988644333    2445899999999 8999999999998 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      ++..  ...+..|...|.+++|+|++ ++|++++.||.|++||+++++.        .....|...+.+++|+|+++.++
T Consensus       254 ~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~  322 (337)
T 1gxr_A          254 NKPD--KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS--------IFQSKESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             TSSC--EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--------EEEEECSSCEEEEEECTTSCEEE
T ss_pred             CCCC--eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeE--------EEEecCCCcEEEEEECCCCCEEE
Confidence            8754  56778899999999999999 6999999999999999988663        24456889999999999999999


Q ss_pred             EEEcCCcEEEEEC
Q 035558          241 AIAFSTKLQILRV  253 (253)
Q Consensus       241 ~~~~~~~i~vw~l  253 (253)
                      +++.|+.+++|++
T Consensus       323 ~~~~dg~i~iw~~  335 (337)
T 1gxr_A          323 TGSGDKKATVYEV  335 (337)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EecCCCeEEEEEE
Confidence            9999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-37  Score=248.58  Aligned_cols=239  Identities=16%  Similarity=0.198  Sum_probs=183.9

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +|.++.+||+|+ | .|+|||+..+  .......+.+|.     ++|++++|+|.++++|++|+.||+|++||++++...
T Consensus       128 ~P~~~~~lasGs~dg~i~lWd~~~~--~~~~~~~~~gH~-----~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          128 HPTHPSTVAVGSKGGDIMLWNFGIK--DKPTFIKGIGAG-----GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CSSCTTCEEEEETTSCEEEECSSCC--SCCEEECCCSSS-----CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             eCCCCCEEEEEeCCCEEEEEECCCC--CceeEEEccCCC-----CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            477888999988 4 9999999874  123344567888     899999999668899999999999999999876543


Q ss_pred             eeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           79 TQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        79 ~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ....  .+...+.+++|+ ++.+|++|+.||.|++||++...    +.....|...|.+++|+|....++++++.|+. |
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v  275 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVALNPCCDWFLATASVDQT-V  275 (435)
T ss_dssp             EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-C
T ss_pred             EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce----eEEEecccceEEeeeecCCCceEEEEecCcce-e
Confidence            3332  234567899999 99999999999999999997643    33445677899999999955568889999998 9


Q ss_pred             EEEECCCCCC--CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC--------------------
Q 035558          156 VVLDIRFPTL--PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG--------------------  213 (253)
Q Consensus       156 ~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------  213 (253)
                      ++||+++...  ......+|...|++++|+|++ .+|++++.||.|++||++++..+...                    
T Consensus       276 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (435)
T 4e54_B          276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP  354 (435)
T ss_dssp             CEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred             eEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence            9999987653  233446799999999999999 69999999999999999865421100                    


Q ss_pred             ---------------------CCCC------------ee-eccCCCceeEE-EEcCCCCceEEEEcCCcEEEEEC
Q 035558          214 ---------------------GLDP------------IL-AYTAGAEIEQL-QWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       214 ---------------------~~~~------------~~-~~~~~~~v~~~-~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                                           ....            .. ..+|...|.++ +|+|+++.| +++.|+.|+||++
T Consensus       355 ~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l-asg~d~~i~iW~~  428 (435)
T 4e54_B          355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL-ASAMGYHILIWSQ  428 (435)
T ss_dssp             SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE-EEECSSEEEECCC
T ss_pred             CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE-EEEcCCcEEEEEC
Confidence                                 0000            01 12466677777 699999855 5566899999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.3e-36  Score=237.42  Aligned_cols=232  Identities=12%  Similarity=0.185  Sum_probs=195.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ + .|++|++..+  ..+....+.+|.     ..|.+++|+ +++++|++++.||.|++||+++++....
T Consensus        18 ~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~h~-----~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~   89 (372)
T 1k8k_C           18 KDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHN-----GQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPT   89 (372)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETT--EEEEEEEEECCS-----SCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCC--cEEeeeeecCCC-----CcccEEEEe-CCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence            3567888875 5 9999999885  122788888998     899999999 7999999999999999999988875443


Q ss_pred             --eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           81 --LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        81 --~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                        +..|...|.+++|+ ++++|++++.|+.|++||++......... ....+...|.+++|+| +++++++++.++. |+
T Consensus        90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~-i~  167 (372)
T 1k8k_C           90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFK-CR  167 (372)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSC-EE
T ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCC-EE
Confidence              35789999999999 99999999999999999999887433322 2245567999999999 8999999999998 99


Q ss_pred             EEECCC-----------------CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558          157 VLDIRF-----------------PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       157 ~~d~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      +||++.                 ...++..+..|...|.+++|+|++ .+|++++.||.|++||+++++...       .
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~-------~  239 (372)
T 1k8k_C          168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVA-------T  239 (372)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEE-------E
T ss_pred             EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeE-------E
Confidence            999742                 123467778899999999999999 699999999999999999876443       6


Q ss_pred             eccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...|..+|.+++|+|++. +++++.|+.+++|++
T Consensus       240 ~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~~~  272 (372)
T 1k8k_C          240 LASETLPLLAVTFITESS-LVAAGHDCFPVLFTY  272 (372)
T ss_dssp             EECSSCCEEEEEEEETTE-EEEEETTSSCEEEEE
T ss_pred             EccCCCCeEEEEEecCCC-EEEEEeCCeEEEEEc
Confidence            668889999999999997 555669999999984

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.9e-37  Score=248.14  Aligned_cols=210  Identities=15%  Similarity=0.228  Sum_probs=176.2

Q ss_pred             eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeeeecccccEEEEEec--CCCeEEEEeCC
Q 035558           30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQLIAHDKEVYDIAWG--GVGVFASVSAD  105 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~~l~~~~~d  105 (253)
                      .....+|.     ..|++|+|+|.++++||+|+.||.|+|||+.+++.  ...+.+|.+.|++|+|+  ++++|++++.|
T Consensus       112 ~~~~~~~~-----~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          112 LQKAAPFD-----RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             CCEEEECS-----SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             cccCCCCC-----CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            33444565     78999999976788999999999999999987653  34456899999999999  68899999999


Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH  185 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  185 (253)
                      |+|++||+++.. ...+.........+.+++|+| ++.+|++|+.++. |++||++..  .+..+.+|...|++++|+|+
T Consensus       187 ~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~-i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          187 GTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGN-VILLNMDGK--ELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             SCEEEEETTSCE-EEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSB-EEEEESSSC--BCCCSBCCSSCEEEEEECTT
T ss_pred             CEEEEeeccCCc-eeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCc-EeeeccCcc--eeEEEecccceEEeeeecCC
Confidence            999999998654 233444444555788999999 9999999999998 999999753  46788899999999999999


Q ss_pred             CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++.+|++|+.|+.|++||++......    ......+|..+|++++|+|++.+|++++.|+.|++|++
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~----~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKA----SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSS----CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred             CceEEEEecCcceeeEEecccccccc----eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence            86688999999999999998876432    12244679999999999999999999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=242.60  Aligned_cols=237  Identities=17%  Similarity=0.303  Sum_probs=195.5

Q ss_pred             CCCCCceEEee----------c-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEE
Q 035558            1 ECQKPDLLATS----------S-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCT   68 (253)
Q Consensus         1 sp~~~~~l~~~----------~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   68 (253)
                      +|+...+|+++          + + .|++|++..+ ...+....+ .|.     ..|++++|+ +++++|++|+.||.|+
T Consensus        21 sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~-~~~~~~~~~-~~~-----~~v~~~~~s-~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           21 SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA-DSEKPIASL-QVD-----SKFNDLDWS-HNNKIIAGALDNGSLE   92 (416)
T ss_dssp             CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG-GGCSCSCCC-CCS-----SCEEEEEEC-SSSSCEEEEESSSCEE
T ss_pred             CCCCCCEEEEEecCcccccccCCCCeEEEEEccCC-CCCcEEEEE-ecC-----CceEEEEEC-CCCCeEEEEccCCeEE
Confidence            45555588888          5 4 9999999875 111233333 455     789999999 8999999999999999


Q ss_pred             EEeccC----ceeeeeeecccccEEEEEec-C-CCeEEEEeCCCcEEEEEcCCCC------CeeeeeccCCCCCCeeEEE
Q 035558           69 IWDIER----EAVDTQLIAHDKEVYDIAWG-G-VGVFASVSADGSVRVFDLRDKE------HSTIIYESSEPDTPLVRLG  136 (253)
Q Consensus        69 vwd~~~----~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~i~~~~  136 (253)
                      +||+..    .+.+..+.+|...|.+++|+ + +++|++++.||.|++||+++.+      ..........+...|.+++
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            999987    35777888999999999999 6 8999999999999999999876      3333333456777999999


Q ss_pred             eeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc------ccceeEEEEecCCCCeEEEecCCC---cEEEEeccCC
Q 035558          137 WNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH------QASVNAIAWAPHSSCHICTAGDDS---QALIWDLSSM  207 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~  207 (253)
                      |+|..+.++++++.++. |++||+++.+ ++..+..+      ...|.+++|+|++..+|++++.|+   .|++||+++.
T Consensus       173 ~~~~~~~~l~~~~~dg~-v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNF-ASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             ECSSCTTEEEEESSSSC-EEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             eCCCCCcEEEEEcCCCC-EEEEECCCCC-cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            99944889999999998 9999999865 36666655      788999999999866899999999   9999999987


Q ss_pred             CCCCCCCCCCeeec-cCCCceeEEEEcC-CCCceEEEEcCCcEEEEEC
Q 035558          208 GQPVEGGLDPILAY-TAGAEIEQLQWSS-SQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       208 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..+.      .... +|...|.+++|+| ++..+++++.|+.|++|++
T Consensus       251 ~~~~------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          251 NTPL------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             TSCS------BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             CCCc------EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence            5443      3455 7999999999999 8888899999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.2e-36  Score=241.38  Aligned_cols=233  Identities=18%  Similarity=0.286  Sum_probs=191.0

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-------e
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-------A   76 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~   76 (253)
                      .++++++ + .|+||++............+.+|.     ..|++++|+|.++++|++|+.||.|++||+.++       +
T Consensus        48 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~-----~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~  122 (402)
T 2aq5_A           48 ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT-----APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE  122 (402)
T ss_dssp             EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS-----SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS
T ss_pred             EEEEEEcCCCEEEEEECccCCCCCCCCceEecCC-----CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCC
Confidence            3444444 5 999999976423334566778898     899999999438999999999999999999887       5


Q ss_pred             eeeeeecccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           77 VDTQLIAHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      .+..+.+|...|.+++|+ ++ ++|++++.||.|++||+++++....+. ...+...|.+++|+| ++.+|++++.|+. 
T Consensus       123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-  199 (402)
T 2aq5_A          123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSR-DGALICTSCRDKR-  199 (402)
T ss_dssp             CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-TTTCCSCEEEEEECT-TSSCEEEEETTSE-
T ss_pred             ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-cCCCCCceEEEEECC-CCCEEEEEecCCc-
Confidence            677888999999999999 76 699999999999999999886433221 145677999999999 9999999999998 


Q ss_pred             EEEEECCCCCCCeeee-cccccc-eeEEEEecCCCCeEEEe---cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE
Q 035558          155 VVVLDIRFPTLPVVEL-QRHQAS-VNAIAWAPHSSCHICTA---GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ  229 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  229 (253)
                      |++||+++... +..+ ..|... +.+++|+|++ .+|++|   +.|+.|++||+++...+.     ......|...+.+
T Consensus       200 i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~v~~  272 (402)
T 2aq5_A          200 VRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPL-----SLQELDTSSGVLL  272 (402)
T ss_dssp             EEEEETTTTEE-EEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCS-----EEEECCCCSSCEE
T ss_pred             EEEEeCCCCce-eeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCc-----eEEeccCCCceeE
Confidence            99999998653 6666 677765 8999999998 689998   899999999999877543     1233467888999


Q ss_pred             EEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          230 LQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       230 ~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      ++|+|+++.+++++ .|+.|++|++
T Consensus       273 ~~~s~~~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          273 PFFDPDTNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             EEEETTTTEEEEEETTCSCEEEEEE
T ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEe
Confidence            99999999876555 6999999984

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=227.87  Aligned_cols=225  Identities=20%  Similarity=0.326  Sum_probs=183.6

Q ss_pred             ceEEeecC-cEEEEEccCCccccceeeeec--CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            6 DLLATSSD-FLRVWRISDEDRRVELKSLLN--GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      ++||+|.| +|+|||+.++    ++...++  +|.     ..|++++|+ +++++|++|+.||+|++||+++++.+..+.
T Consensus        37 ~~lAvg~D~tV~iWd~~tg----~~~~~~~~~~~~-----~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           37 NVLAVALDNSVYLWSASSG----DILQLLQMEQPG-----EYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             SEEEEEETTEEEEEETTTC----CEEEEEECCSTT-----CCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEeCCEEEEEECCCC----CEEEEEEecCCC-----CeEEEEEEC-CCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            47888888 9999999987    6666655  455     789999999 899999999999999999999999999999


Q ss_pred             cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558           83 AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus        83 ~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      +|...+.++.+ ++..+++++.++.+++|+.......  +.....+...+..+.+++ +++++++++.|+. |++||+++
T Consensus       107 ~h~~~~~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~-i~iwd~~~  181 (318)
T 4ggc_A          107 SHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAP-DGRHLASGGNDNL-VNVWPSAP  181 (318)
T ss_dssp             CCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECT-TSSEEEEEETTSC-EEEEESSC
T ss_pred             CccceEEEeec-CCCEEEEEecCCceEeeecCCCcee--EEEEcCccCceEEEEEcC-CCCEEEEEecCcc-eeEEECCC
Confidence            99998877665 5789999999999999999877643  333346667899999999 8999999999998 99999976


Q ss_pred             CCCC---eeee--------------------------------------------cccccceeEEEEecCCCCeEEE--e
Q 035558          163 PTLP---VVEL--------------------------------------------QRHQASVNAIAWAPHSSCHICT--A  193 (253)
Q Consensus       163 ~~~~---~~~~--------------------------------------------~~~~~~i~~~~~~~~~~~~l~~--~  193 (253)
                      .+..   ....                                            ..+...+..+.|+|++. .+++  |
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~sg  260 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHG  260 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT-EEEEEEC
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc-ceEEEEE
Confidence            4310   1111                                            11234566777888774 5544  4


Q ss_pred             cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          194 GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       194 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +.|+.|++||+++++...       .+.+|..+|++++|+|++++|++++.|+.|+||++
T Consensus       261 ~~d~~i~iwd~~~~~~~~-------~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVA-------ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             TTTCCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             cCCCEEEEEECCCCcEEE-------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            479999999999876543       67789999999999999999999999999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-35  Score=238.12  Aligned_cols=234  Identities=21%  Similarity=0.322  Sum_probs=192.6

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeec--CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLN--GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +++||+|.| +|+|||..++    +....++  +|.     ..|++|+|+ +++++|++|+.||.|++||+++++.+..+
T Consensus       116 ~n~lAvgld~tV~lWd~~tg----~~~~~~~~~~~~-----~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          116 GNVLAVALDNSVYLWSASSG----DILQLLQMEQPG-----EYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             TSEEEEEETTEEEEEETTTC----CEEEEEECCSTT-----CCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCEEEEEECCCC----CEEEEEEecCCC-----CcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            458888888 9999999987    6665554  555     789999999 89999999999999999999999999999


Q ss_pred             ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .+|...+.++++ ++..+++|+.|+.+++||.+.....  +.....|...+..+.|+| ++.++++++.|+. +++||..
T Consensus       186 ~~h~~~v~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~~--~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~-v~i~~~~  260 (420)
T 4gga_A          186 TSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAP-DGRHLASGGNDNL-VNVWPSA  260 (420)
T ss_dssp             CCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECT-TSSEEEEEETTSC-EEEEESS
T ss_pred             eCCCCceEEEee-CCCEEEEEeCCCceeEeeeccccee--eEEecccccceeeeeecC-CCCeeeeeecccc-ceEEeec
Confidence            999999998888 5789999999999999999876643  333346677999999999 9999999999999 9999998


Q ss_pred             CCCC---CeeeecccccceeEEEEecCCCCeEEE--ecCCCcEEEEeccCCCCCC-------------------------
Q 035558          162 FPTL---PVVELQRHQASVNAIAWAPHSSCHICT--AGDDSQALIWDLSSMGQPV-------------------------  211 (253)
Q Consensus       162 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~-------------------------  211 (253)
                      ....   .+.....|...|.+++|+|.+..++++  |+.|++|++||+.++....                         
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEe
Confidence            7542   355667788889999999987666655  4578888888887654110                         


Q ss_pred             -----------CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          212 -----------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       212 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                                 ........+.+|..+|++++|+|+++.|++++.|+.|++|++
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence                       000112345689999999999999999999999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=243.67  Aligned_cols=237  Identities=16%  Similarity=0.345  Sum_probs=195.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----   76 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----   76 (253)
                      +++.+|++++ + .|++|++.......+....+.+|.     ..|.+++|+|.++++|++++.||.|++||+.+++    
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS-----SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS-----SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred             CCCCeEEEEccCCeEEEeecccccccccchhhccCCc-----cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence            3566777776 5 999999987322235778888898     8999999993338999999999999999998876    


Q ss_pred             --eeee---eecccccEEEEEec-C-CCeEEEEeCCCcEEEEEcCCCCCeeeeeccC---CCCCCeeEEEeeCCCCCEEE
Q 035558           77 --VDTQ---LIAHDKEVYDIAWG-G-VGVFASVSADGSVRVFDLRDKEHSTIIYESS---EPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        77 --~~~~---~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~  146 (253)
                        ....   +..|...|.+++|+ + +.+|++++.||.|++||+++.+....+....   .+...+.+++|+|....+++
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence              3322   35789999999999 6 7899999999999999999886444333221   12568999999994457899


Q ss_pred             EEEeCC---CeEEEEECCCCCCCeeeec-ccccceeEEEEec-CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558          147 TIIMDS---AKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAP-HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY  221 (253)
Q Consensus       147 ~~~~~~---~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  221 (253)
                      +++.++   . |++||+++...++..+. +|...|.+++|+| ++ .+|++++.||.|++||+++++..       ..+.
T Consensus       232 ~~~~d~~~~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~-------~~~~  302 (416)
T 2pm9_A          232 TATGSDNDPS-ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQL-------SQFP  302 (416)
T ss_dssp             EEECCSSSCC-CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEE-------EEEE
T ss_pred             EEECCCCCce-EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccc-------eeec
Confidence            999887   7 99999998766678888 8999999999999 66 79999999999999999987643       3667


Q ss_pred             cCCCceeEEEEcCCC-CceEEEEcCCcEEEEEC
Q 035558          222 TAGAEIEQLQWSSSQ-PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       222 ~~~~~v~~~~~~~~~-~~~~~~~~~~~i~vw~l  253 (253)
                      .|...|.+++|+|++ ..+++++.|+.|++|++
T Consensus       303 ~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          303 ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL  335 (416)
T ss_dssp             CSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred             CCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence            899999999999998 67778899999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-37  Score=250.01  Aligned_cols=238  Identities=13%  Similarity=0.099  Sum_probs=181.5

Q ss_pred             CCceEEeec-C-cEEEEEccCCccc-------cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRR-------VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~   74 (253)
                      ++.+||+++ | +|++||+..+...       .++...+.+|.     ..|++++|+ ++ ..|++|+.||+|++||+++
T Consensus       224 ~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-----~~v~sv~~s-~~-~~lasgs~DgtV~lWD~~~  296 (524)
T 2j04_B          224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-----SLITTFDFL-SP-TTVVCGFKNGFVAEFDLTD  296 (524)
T ss_dssp             SSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-----TCEEEEEES-SS-SEEEEEETTSEEEEEETTB
T ss_pred             CCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC-----CCEEEEEec-CC-CeEEEEeCCCEEEEEECCC
Confidence            467888887 5 9999999764111       11234677888     899999999 43 5899999999999999987


Q ss_pred             ce-eeeeeecccccEEEE--Eec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           75 EA-VDTQLIAHDKEVYDI--AWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        75 ~~-~~~~~~~~~~~v~~~--~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      ++ ....+.+|...|.++  .|+ ++ .+|++++.|++|++||+++.+....+.... ....|.+++|+| ++..+++++
T Consensus       297 ~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp-~~~~l~s~~  374 (524)
T 2j04_B          297 PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCP-QIYSYIYSD  374 (524)
T ss_dssp             CSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEET-TTTEEEEEC
T ss_pred             CCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc-ccCcccceEeCC-CcCeEEEeC
Confidence            64 455688999999999  456 66 899999999999999999876544333211 112578999999 888999999


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC------------------
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV------------------  211 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------  211 (253)
                      .++. |++||+++... +..+.+|...|++++|+|++ .+|++|+.||+|++||+.......                  
T Consensus       375 ~d~t-v~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~  451 (524)
T 2j04_B          375 GASS-LRAVPSRAAFA-VHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDY  451 (524)
T ss_dssp             SSSE-EEEEETTCTTC-CEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBC
T ss_pred             CCCc-EEEEECccccc-ceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEecc
Confidence            8887 99999998664 67788899999999999999 599999999999999975321000                  


Q ss_pred             -C------------------CCCCCeeeccCCCceeEEEEcCCCC---ceEEEEcCCcEEEEEC
Q 035558          212 -E------------------GGLDPILAYTAGAEIEQLQWSSSQP---DWVAIAFSTKLQILRV  253 (253)
Q Consensus       212 -~------------------~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~i~vw~l  253 (253)
                       .                  .......+.+|..+|.+|+|+|+++   .+++++.++.|+||++
T Consensus       452 sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          452 SIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             CSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             CCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence             0                  0111234557889999999999964   5667777899999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.9e-35  Score=228.89  Aligned_cols=228  Identities=15%  Similarity=0.196  Sum_probs=192.6

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeec--CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--e
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLN--GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--V   77 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~   77 (253)
                      +++.+|+++++ .|++|++..+ ........+.  +|.     ..|.+++|+ +++++|++++.||.|++||+++++  .
T Consensus        61 ~~~~~l~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~  133 (337)
T 1gxr_A           61 NPTRHVYTGGKGCVKVWDISHP-GNKSPVSQLDCLNRD-----NYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             SSSSEEEEECBSEEEEEETTST-TCCSCSEEEECSCTT-----SBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred             cCCcEEEEcCCCeEEEEECCCC-CceeeeecccccCCC-----CcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCcce
Confidence            46778888888 9999999875 2222333333  566     899999999 799999999999999999999877  5


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ...+..|...|.+++|+ +++++++++.||.|++||+++++...   ....+...+.+++|+| +++++++++.++. |+
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~-i~  208 (337)
T 1gxr_A          134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDISN-DGTKLWTGGLDNT-VR  208 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSE-EE
T ss_pred             eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee---eeecccCceEEEEECC-CCCEEEEEecCCc-EE
Confidence            66777899999999999 99999999999999999999876333   3345667999999999 8999999999998 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      +||+++.+. +..+ .+...+.+++|+|++ .+|++++.|+.|++||++....        .....|..+|.+++|+|++
T Consensus       209 ~~d~~~~~~-~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~  277 (337)
T 1gxr_A          209 SWDLREGRQ-LQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK--------YQLHLHESCVLSLKFAYCG  277 (337)
T ss_dssp             EEETTTTEE-EEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE--------EEECCCSSCEEEEEECTTS
T ss_pred             EEECCCCce-Eeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe--------EEEcCCccceeEEEECCCC
Confidence            999987653 4444 477889999999999 6999999999999999988652        3567899999999999999


Q ss_pred             CceEEEEcCCcEEEEEC
Q 035558          237 PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~~~~~i~vw~l  253 (253)
                      +.+++++.|+.+++|++
T Consensus       278 ~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          278 KWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             SEEEEEETTSEEEEEET
T ss_pred             CEEEEecCCCcEEEEEC
Confidence            99999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-35  Score=236.16  Aligned_cols=226  Identities=22%  Similarity=0.363  Sum_probs=191.7

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecC-CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNG-NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      .+.+++++.+ .|++|++.++    +....+.. |.     ..|++++|+ +++++|++|+.||.|++||+++++.+..+
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~----~~~~~~~~~~~-----~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  172 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSG----SVSALAETDES-----TYVASVKWS-HDGSFLSVGLGNGLVDIYDVESQTKLRTM  172 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTC----CEEEEEECCTT-----CCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCCEEEEECCCeEEEeeCCCC----cEeEeeecCCC-----CCEEEEEEC-CCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence            3456666667 9999999987    55555554 56     789999999 79999999999999999999999999999


Q ss_pred             ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .+|...|.+++| +++.+++++.||.|++||++....  .......+...|.+++|+| ++.+|++++.|+. |++||++
T Consensus       173 ~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~-v~iwd~~  247 (401)
T 4aez_A          173 AGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNV-VQIWDAR  247 (401)
T ss_dssp             CCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETT
T ss_pred             cCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcc--eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCe-EEEccCC
Confidence            999999999999 578999999999999999996543  2333345677999999999 9999999999998 9999999


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEec--CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAG--DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      +.. ++..+..|...|.+++|+|++..++++++  .|+.|++||++++...        ....+...|.+++|+|+++.+
T Consensus       248 ~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l  318 (401)
T 4aez_A          248 SSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV--------NTVDAGSQVTSLIWSPHSKEI  318 (401)
T ss_dssp             CSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE--------EEEECSSCEEEEEECSSSSEE
T ss_pred             CCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE--------EEEeCCCcEEEEEECCCCCeE
Confidence            855 47788889999999999998866778765  8999999999986532        344577899999999999988


Q ss_pred             EEEE--cCCcEEEEEC
Q 035558          240 VAIA--FSTKLQILRV  253 (253)
Q Consensus       240 ~~~~--~~~~i~vw~l  253 (253)
                      ++++  .|+.+++|++
T Consensus       319 ~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          319 MSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             EEEECTTTCEEEEEEE
T ss_pred             EEEeecCCCcEEEEec
Confidence            8754  7999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.4e-35  Score=232.98  Aligned_cols=237  Identities=16%  Similarity=0.259  Sum_probs=192.1

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccccceeeee-------------cCCCCccccCCeeEEEecCCCCCEEEEEeCCC
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRRVELKSLL-------------NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT   65 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   65 (253)
                      +|.++.+|++++ + .|++|++...    .....+             .+|.     ..|.+++|+|.++.+|++++.||
T Consensus        52 s~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           52 EPVEGRYMLSGGSDGVIVLYDLENS----SRQSYYTCKAVCSIGRDHPDVHR-----YSVETVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             CTTTCCEEEEEETTSCEEEEECCCC----SSSSCEEECEEEEECTTCTTCCS-----SCEEEEEECTTCTTCEEEEETTS
T ss_pred             ecCCCCEEEEEcCCCeEEEEECCCC----cccceEeccccccccccccccCC-----CcEEEEEEccCCCcEEEEEeCCC
Confidence            354788888887 5 9999999886    222222             2466     89999999954888999999999


Q ss_pred             eEEEEeccCceeeeeeecccccEEEEEec-C---CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC
Q 035558           66 TCTIWDIEREAVDTQLIAHDKEVYDIAWG-G---VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD  141 (253)
Q Consensus        66 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  141 (253)
                      .|++||+.+++....+. +...+.++.++ .   +.++++++.||.|++||+++++....+   ..+...|.+++|+| +
T Consensus       123 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---~~~~~~v~~~~~~~-~  197 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL---QGHRQEILAVSWSP-R  197 (408)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE---CCCCSCEEEEEECS-S
T ss_pred             eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee---cCCCCcEEEEEECC-C
Confidence            99999999998887776 77889999998 3   349999999999999999988754433   45667999999999 5


Q ss_pred             CC-EEEEEEeCCCeEEEEECCCCCCCeeee---------------cccccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558          142 PR-YMATIIMDSAKVVVLDIRFPTLPVVEL---------------QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS  205 (253)
Q Consensus       142 ~~-~l~~~~~~~~~i~~~d~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~  205 (253)
                      +. ++++++.++. |++||+++...++..+               ..|...|.+++|+|++ .+|++++.||.|++||+.
T Consensus       198 ~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          198 YDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             CTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred             CCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECC
Confidence            55 6889999998 9999998866444444               5788999999999998 699999999999999998


Q ss_pred             CCCCCCCC----------------------------------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558          206 SMGQPVEG----------------------------------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       206 ~~~~~~~~----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                      ++......                                        ......+.+|...|++++|+|+++.+++++.|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  355 (408)
T 4a11_B          276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD  355 (408)
T ss_dssp             TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence            86532210                                        01122345689999999999999999999999


Q ss_pred             CcEEEEEC
Q 035558          246 TKLQILRV  253 (253)
Q Consensus       246 ~~i~vw~l  253 (253)
                      +.|++|++
T Consensus       356 g~i~iw~~  363 (408)
T 4a11_B          356 CNILAWVP  363 (408)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEeC
Confidence            99999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=230.56  Aligned_cols=236  Identities=15%  Similarity=0.224  Sum_probs=197.9

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.+|++++ + .|++||+.++    +....+.+|.     ..|.+++|+ +++++|++++.||.|++||+.+++.+..+
T Consensus        43 ~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  112 (369)
T 3zwl_B           43 EGDLLFSCSKDSSASVWYSLNG----ERLGTLDGHT-----GTIWSIDVD-CFTKYCVTGSADYSIKLWDVSNGQCVATW  112 (369)
T ss_dssp             TSCEEEEEESSSCEEEEETTTC----CEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCc----hhhhhhhhcC-----CcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            567777776 5 9999999887    8888999998     899999999 79999999999999999999999988888


Q ss_pred             ecccccEEEEEec-CCCeEEEEeCC-----CcEEEEEcCCCCCeeeee--------ccCCCCC--CeeEEEeeCCCCCEE
Q 035558           82 IAHDKEVYDIAWG-GVGVFASVSAD-----GSVRVFDLRDKEHSTIIY--------ESSEPDT--PLVRLGWNKQDPRYM  145 (253)
Q Consensus        82 ~~~~~~v~~~~~~-~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~--------~~~~~~~--~i~~~~~~~~~~~~l  145 (253)
                      . +...|.+++|+ ++.++++++.+     +.|++||++.......+.        ....+..  .+.+++|+| +++++
T Consensus       113 ~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  190 (369)
T 3zwl_B          113 K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYI  190 (369)
T ss_dssp             E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEE
T ss_pred             e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEE
Confidence            7 88999999999 99999999999     999999998765322111        1112223  899999999 89999


Q ss_pred             EEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC------------
Q 035558          146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG------------  213 (253)
Q Consensus       146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------  213 (253)
                      ++++.++. |++||+++...++..+..|...|.+++|+|++ .+|++++.||.|++||+++.......            
T Consensus       191 ~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  268 (369)
T 3zwl_B          191 IAGHKDGK-ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVIT  268 (369)
T ss_dssp             EEEETTSE-EEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred             EEEcCCCE-EEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeecCCCCceeEEec
Confidence            99999998 99999998555688888899999999999998 69999999999999999876522100            


Q ss_pred             ------------------------------------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          214 ------------------------------------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       214 ------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                                                          ........+|...|.+++|+|+++.+++++.|+.|++|++
T Consensus       269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             SSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence                                                0001233468899999999999999999999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.9e-36  Score=236.81  Aligned_cols=232  Identities=13%  Similarity=0.195  Sum_probs=189.3

Q ss_pred             ceEEeec-C-cEEEEEccCCccccce-----eeeecCCCCccccCCeeEEEecC---CCCCE-EEEEeCCCeEEEEeccC
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVEL-----KSLLNGNKNSEYCGPLTSFDWNE---AEPRR-IGTSSIDTTCTIWDIER   74 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~---~~~~~-l~~~~~dg~i~vwd~~~   74 (253)
                      .+|++++ + .|++|++..+    +.     ...+..|........|.+++|++   +++++ |++++.||.|++||+++
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEEC----TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             cEEEEEcCCCCEEEEEccCC----cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence            7888877 5 9999999886    44     67777772100017899999993   36778 99999999999999998


Q ss_pred             ------ceeee-----eee-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC---CCCe
Q 035558           75 ------EAVDT-----QLI-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP---DTPL  132 (253)
Q Consensus        75 ------~~~~~-----~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~i  132 (253)
                            ++.+.     .+.       .|...|.+++|+ ++ ++++++.||.|++||+++.+....+.....|   ...|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence                  66665     664       388999999999 88 9999999999999999987644444331225   6799


Q ss_pred             eEEEeeCCCCCEEEEEEeC---CCeEEEEECCCCCCCeeeecc-------------cccceeEEEEecCCCCeEEEecCC
Q 035558          133 VRLGWNKQDPRYMATIIMD---SAKVVVLDIRFPTLPVVELQR-------------HQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       133 ~~~~~~~~~~~~l~~~~~~---~~~i~~~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      .+++|+| ++.+|++++.+   +. |++||+++.+ ++..+..             |...|.+++|+|++ .+|++++.|
T Consensus       237 ~~i~~~~-~~~~l~~~~~d~~~g~-i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  312 (397)
T 1sq9_A          237 RSVKFSP-QGSLLAIAHDSNSFGC-ITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD  312 (397)
T ss_dssp             EEEEECS-STTEEEEEEEETTEEE-EEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred             ceEEECC-CCCEEEEEecCCCCce-EEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence            9999999 89999999999   77 9999999865 4778887             99999999999999 699999999


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeec------cC---------------CCceeEEEEcCCC----------CceEEEEcC
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAY------TA---------------GAEIEQLQWSSSQ----------PDWVAIAFS  245 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~~~~~~~~  245 (253)
                      |.|++||+++.+...       ...      .|               ..+|.+++|+|++          +.+++++.|
T Consensus       313 g~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d  385 (397)
T 1sq9_A          313 GKLRFWDVKTKERIT-------TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD  385 (397)
T ss_dssp             SEEEEEETTTTEEEE-------EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred             CeEEEEEcCCCceeE-------EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC
Confidence            999999998876433       333      55               8999999999998          678899999


Q ss_pred             CcEEEEEC
Q 035558          246 TKLQILRV  253 (253)
Q Consensus       246 ~~i~vw~l  253 (253)
                      +.|++|++
T Consensus       386 g~i~iw~~  393 (397)
T 1sq9_A          386 RSIRWFRE  393 (397)
T ss_dssp             TEEEEEEE
T ss_pred             CcEEEEEc
Confidence            99999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=233.33  Aligned_cols=234  Identities=18%  Similarity=0.279  Sum_probs=189.8

Q ss_pred             CceEEeec-C-cEEEEEccCCccccc-eeeeecCCCCccccCCeeEEEecC-----CCCCEEEEEeCCCeEEEEeccCce
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVE-LKSLLNGNKNSEYCGPLTSFDWNE-----AEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      +.+|++++ + .|++||+..+    + ....+.+|.     ..|.+++|.|     +++++|++++.||.|++||+++++
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-----~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~  150 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAP----EMPVYSVKGHK-----EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD  150 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSC----SSCSEEECCCS-----SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred             CceEEEecCCCeEEEEeCCCC----CccEEEEEecc-----cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence            67888877 5 9999999986    4 678888998     8999996532     788999999999999999999886


Q ss_pred             -eeeeeecccc----cEEEEE----ec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC--CCCE
Q 035558           77 -VDTQLIAHDK----EVYDIA----WG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ--DPRY  144 (253)
Q Consensus        77 -~~~~~~~~~~----~v~~~~----~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~  144 (253)
                       .+..+..|.+    .+.+++    |+ +++++++++.||.|++||+++.+....    ..+...|.+++|+|.  ++.+
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~  226 (357)
T 3i2n_A          151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----TNIKNGVCSLEFDRKDISMNK  226 (357)
T ss_dssp             SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEESCSSSSCCE
T ss_pred             CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee----cCCCCceEEEEcCCCCCCCCE
Confidence             6777765554    899998    67 899999999999999999998864222    244568999999985  6789


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCeeee-----cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC-----
Q 035558          145 MATIIMDSAKVVVLDIRFPTLPVVEL-----QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG-----  214 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----  214 (253)
                      +++++.++. |++||+++... ...+     ..|...|++++|+|++..+|++++.||.|++||++.........     
T Consensus       227 l~~~~~dg~-i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~  304 (357)
T 3i2n_A          227 LVATSLEGK-FHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE  304 (357)
T ss_dssp             EEEEESTTE-EEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred             EEEECCCCe-EEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence            999999998 99999987543 3333     38999999999999983389999999999999998765331000     


Q ss_pred             -------CCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          215 -------LDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       215 -------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                             .......+|..+|++++|+|+++.++ +++.|+.|++|++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          305 MGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             CCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             cccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence                   11234567999999999999999888 7999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.5e-35  Score=243.72  Aligned_cols=222  Identities=16%  Similarity=0.286  Sum_probs=191.5

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ + .|++|+...     .....+.+|.     ..|.+++|+ +++++|++|+.||.|++||. +++.+..
T Consensus       313 ~~~~~l~t~~~d~~i~~w~~~~-----~~~~~~~~~~-----~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~-~~~~~~~  380 (577)
T 2ymu_A          313 PDGQTIASASDDKTVKLWNRNG-----QHLQTLTGHS-----SSVWGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQT  380 (577)
T ss_dssp             TTSSEEEEEETTSCEEEEETTS-----CEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCC-----CeeEEEeCCC-----CCEEEEEEC-CCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence            4566777776 4 999999876     5567788888     899999999 89999999999999999996 4677888


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|...|.+++|+ ++++|++++.|+.|++||... +   .+.....+...|.+++|+| +++++++++.|+. |++||
T Consensus       381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~---~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~-v~~w~  454 (577)
T 2ymu_A          381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q---LLQTLTGHSSSVWGVAFSP-DDQTIASASDDKT-VKLWN  454 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-C---EEEEEECCSSCEEEEEECT-TSSEEEEEETTSE-EEEEE
T ss_pred             ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-C---EEEEecCCCCCeEEEEECC-CCCEEEEEcCCCE-EEEEE
Confidence            89999999999999 999999999999999999643 3   2333346677999999999 8999999999998 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ...  ..+..+.+|...|++++|+|++ ++|++++.|+.|++||.. ++..       ..+.+|...|++++|+|++++|
T Consensus       455 ~~~--~~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~~~-------~~~~~h~~~v~~l~~s~dg~~l  523 (577)
T 2ymu_A          455 RNG--QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLL-------QTLTGHSSSVRGVAFSPDGQTI  523 (577)
T ss_dssp             TTS--CEEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-SCEE-------EEEECCSSCEEEEEECTTSSCE
T ss_pred             CCC--CEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CCEE-------EEEeCCCCCEEEEEEcCCCCEE
Confidence            753  3478888999999999999999 699999999999999964 3322       4677899999999999999999


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.|+.|++|++
T Consensus       524 ~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          524 ASASDDKTVKLWNR  537 (577)
T ss_dssp             EEEETTSEEEEECT
T ss_pred             EEEECcCEEEEEeC
Confidence            99999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5e-35  Score=237.52  Aligned_cols=224  Identities=16%  Similarity=0.197  Sum_probs=192.3

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.+|++|+ | .|++||+.++    +....+.+|.     ..|.+++|+ +++ .+++|+.||+|++||+++++.+..+
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~-----~~V~~l~~~-~~~-~l~s~s~dg~i~vwd~~~~~~~~~~  199 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINK----KFLLQLSGHD-----GGVWALKYA-HGG-ILVSGSTDRTVRVWDIKKGCCTHVF  199 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTT----EEEEEECCCS-----SCEEEEEEC-STT-EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCC-----cCEEEEEEc-CCC-EEEEEeCCCCEEEEECCCCcEEEEE
Confidence            456788877 4 9999999987    8888999999     899999998 555 9999999999999999999999999


Q ss_pred             ecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeee--------------------eeccCCCCCCeeEEEee
Q 035558           82 IAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTI--------------------IYESSEPDTPLVRLGWN  138 (253)
Q Consensus        82 ~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------~~~~~~~~~~i~~~~~~  138 (253)
                      .+|...|.+++|+   ++.++++++.||.|++||+++......                    ......+...+.++  +
T Consensus       200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~  277 (464)
T 3v7d_B          200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--S  277 (464)
T ss_dssp             CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--E
T ss_pred             CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--c
Confidence            9999999999998   568999999999999999998753321                    22334555567766  4


Q ss_pred             CCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558          139 KQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI  218 (253)
Q Consensus       139 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  218 (253)
                      + +++++++++.|+. |++||+++.+ ++..+.+|...|.+++|+|++ .+|++|+.||.|++||+++++...       
T Consensus       278 ~-~~~~l~~~~~d~~-i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~-------  346 (464)
T 3v7d_B          278 G-HGNIVVSGSYDNT-LIVWDVAQMK-CLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMY-------  346 (464)
T ss_dssp             E-ETTEEEEEETTSC-EEEEETTTTE-EEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEE-------
T ss_pred             C-CCCEEEEEeCCCe-EEEEECCCCc-EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEE-------
Confidence            5 7889999999999 9999999765 478888999999999999999 699999999999999999876433       


Q ss_pred             eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          219 LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .+.+|...|.+++|++  ..+++++.|+.|++|++
T Consensus       347 ~~~~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~  379 (464)
T 3v7d_B          347 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDA  379 (464)
T ss_dssp             EECCCSSCEEEEEECS--SEEEEEETTSEEEEEET
T ss_pred             EEeCCCCcEEEEEEcC--CEEEEEeCCCcEEEEEC
Confidence            6678999999999984  57899999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.5e-35  Score=232.17  Aligned_cols=226  Identities=18%  Similarity=0.287  Sum_probs=190.3

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc-Cceeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQ   80 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~   80 (253)
                      ++.+|++++ + .|++||+..+    +....+.+|.     ..|.+++|+   ++.+++|+.||.|++||++ .......
T Consensus       145 ~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~-----~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          145 DGSFLSVGLGNGLVDIYDVESQ----TKLRTMAGHQ-----ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTTC----CEEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCEEEEECCCCeEEEEECcCC----eEEEEecCCC-----CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeE
Confidence            667777776 5 9999999987    7888888998     899999996   5799999999999999998 4567788


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE--eCCCeEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII--MDSAKVVV  157 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~~~i~~  157 (253)
                      +.+|...|.+++|+ ++.+|++++.||.|++||+++.+..   .....+...|.+++|+|....++++++  .|+. |++
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i  288 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK---FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHF  288 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE---EEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEE
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc---EEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEE
Confidence            88999999999999 9999999999999999999987643   333456679999999995566777765  5777 999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEE--ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT--AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      ||+++.. ++..+. +...|.+++|+|++ .+|++  |+.||.|++||+.+.....     .....+|...|.+++|+|+
T Consensus       289 ~d~~~~~-~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~-----~~~~~~h~~~v~~~~~s~d  360 (401)
T 4aez_A          289 WNAATGA-RVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTK-----QVDIPAHDTRVLYSALSPD  360 (401)
T ss_dssp             EETTTCC-EEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEE-----EEEEECCSSCCCEEEECTT
T ss_pred             EECCCCC-EEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCcccee-----EEEecCCCCCEEEEEECCC
Confidence            9999865 355554 66789999999999 58887  5589999999998854322     1245689999999999999


Q ss_pred             CCceEEEEcCCcEEEEEC
Q 035558          236 QPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw~l  253 (253)
                      ++.+++++.|+.|++|++
T Consensus       361 g~~l~s~~~dg~i~iw~~  378 (401)
T 4aez_A          361 GRILSTAASDENLKFWRV  378 (401)
T ss_dssp             SSEEEEECTTSEEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEEC
Confidence            999999999999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5.4e-36  Score=238.47  Aligned_cols=237  Identities=12%  Similarity=0.113  Sum_probs=171.3

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCcc-ccceeeeecCCCCccccCCeeEEEecC-------CCCCEEEEEeCCCeEEEEe
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDR-RVELKSLLNGNKNSEYCGPLTSFDWNE-------AEPRRIGTSSIDTTCTIWD   71 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~vwd   71 (253)
                      |+++.+|++++ | +|++||...+.. .......+.+|.     +.|++++|+|       .++++|++|+.|++|+|||
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~-----~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH-----NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS-----SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC-----CceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            45667888888 5 999999988521 123456688998     8999999984       2688999999999999999


Q ss_pred             ccCceeeeeeecccccEEEEEec-CC-CeEEEEeCCCcEEEEEcCCCCCeeeee----------------------ccCC
Q 035558           72 IEREAVDTQLIAHDKEVYDIAWG-GV-GVFASVSADGSVRVFDLRDKEHSTIIY----------------------ESSE  127 (253)
Q Consensus        72 ~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------~~~~  127 (253)
                      ++++..+..+..|..+|.+++|+ ++ .+|++++.||+|++||+++++......                      ....
T Consensus       173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  252 (393)
T 4gq1_A          173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG  252 (393)
T ss_dssp             EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred             CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence            99888888888899999999999 55 589999999999999999875322111                      1234


Q ss_pred             CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEE------------------EEec-CCCC
Q 035558          128 PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAI------------------AWAP-HSSC  188 (253)
Q Consensus       128 ~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~------------------~~~~-~~~~  188 (253)
                      +...+.++.|.+.++..+++++.|+. +++||++.... ...+..|...+..+                  .|+| .+..
T Consensus       253 ~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (393)
T 4gq1_A          253 IASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY  330 (393)
T ss_dssp             CSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred             ccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence            55688999998659999999999998 99999987543 33333333333332                  3333 2324


Q ss_pred             eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++++|+.||+|++||+.++....       ...+|..+|.+++|+|+|++|+++ .++.+.+|+|
T Consensus       331 ~~~sgs~Dg~V~lwd~~~~~~~~-------~~~~~~~~V~svafspdG~~LA~a-s~~Gv~lvrL  387 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYEKDSNS-------IPIQLGMPIVDFCWHQDGSHLAIA-TEGSVLLTRL  387 (393)
T ss_dssp             EEEEETTTTEEEEEETTCTTCCE-------EEEECSSCEEEEEECTTSSEEEEE-ESSEEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCcEEE-------EecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEE
Confidence            67788999999999999876543       667888999999999999865555 5666777764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-34  Score=224.09  Aligned_cols=233  Identities=17%  Similarity=0.303  Sum_probs=196.8

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      +|+++++|++|+ | +|+|||+...... ..+...+++|.     ..|.+++|+ +++++|++|+.|+.|++|+......
T Consensus        47 sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~-----~~V~~~~~s-~dg~~l~s~~~d~~i~~~~~~~~~~  120 (340)
T 4aow_A           47 TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS-----HFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTT  120 (340)
T ss_dssp             CTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-----CCEEEEEEC-CCCCEEEEEcccccceEEeecccce
Confidence            477789999988 5 9999999765211 23567788998     899999999 8999999999999999999999988


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeE
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKV  155 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i  155 (253)
                      ......+...+..+.++ ++.+|++++.|+.+++||+.....  .......+...+..++|++.. ..++++++.|+. |
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i  197 (340)
T 4aow_A          121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK--YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-V  197 (340)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-E
T ss_pred             eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce--EEEEeccccCcccceEEccCCCCcEEEEEcCCCE-E
Confidence            88888888899999999 999999999999999999886652  333445667789999998843 346778888888 9


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      ++||+++.. .+..+.+|...|++++|+|++ ++|++|+.||.|++||+++....        ....+...|..++|+|+
T Consensus       198 ~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~--------~~~~~~~~v~~~~~~~~  267 (340)
T 4aow_A          198 KVWNLANCK-LKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL--------YTLDGGDIINALCFSPN  267 (340)
T ss_dssp             EEEETTTTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE--------EEEECSSCEEEEEECSS
T ss_pred             EEEECCCCc-eeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee--------eeecCCceEEeeecCCC
Confidence            999999865 478888999999999999999 69999999999999999886532        34456678999999998


Q ss_pred             CCceEEEEcCCcEEEEEC
Q 035558          236 QPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw~l  253 (253)
                      + .+++++.|+.|++|++
T Consensus       268 ~-~~~~~~~d~~i~iwd~  284 (340)
T 4aow_A          268 R-YWLCAATGPSIKIWDL  284 (340)
T ss_dssp             S-SEEEEEETTEEEEEET
T ss_pred             C-ceeeccCCCEEEEEEC
Confidence            7 4888899999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.1e-35  Score=234.44  Aligned_cols=234  Identities=16%  Similarity=0.224  Sum_probs=192.6

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.+|++++ + .|++||+..+    +....+.+|.     ..|.+++|+ +++++|++++.||.|++||+++++.+..+
T Consensus       150 ~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  219 (420)
T 3vl1_A          150 SGEALISSSQDMQLKIWSVKDG----SNPRTLIGHR-----ATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTTIHTF  219 (420)
T ss_dssp             TSSEEEEEETTSEEEEEETTTC----CCCEEEECCS-----SCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCC----cCceEEcCCC-----CcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCceeEEe
Confidence            566777777 5 9999999987    7788889998     899999999 88999999999999999999999988877


Q ss_pred             ec---ccccEEEE---------------------Eec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEE
Q 035558           82 IA---HDKEVYDI---------------------AWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLG  136 (253)
Q Consensus        82 ~~---~~~~v~~~---------------------~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~  136 (253)
                      ..   |...+.++                     +|+ ++++|++++.||.|++||+++++....+  ...+...|.+++
T Consensus       220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~  297 (420)
T 3vl1_A          220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSKFTCSCNSLT  297 (420)
T ss_dssp             CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCTTSSCEEEEE
T ss_pred             ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--ccccCCCceeEE
Confidence            64   33444444                     456 7889999999999999999988744333  335666999999


Q ss_pred             eeCCCCC-EEEEEEeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC--
Q 035558          137 WNKQDPR-YMATIIMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE--  212 (253)
Q Consensus       137 ~~~~~~~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--  212 (253)
                      |+| ++. ++++++.|+. |++||+++...++..+.. |...+.++.+ +++ .+|++++.|+.|++|++.....+..  
T Consensus       298 ~~~-~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~  373 (420)
T 3vl1_A          298 VDG-NNANYIYAGYENGM-LAQWDLRSPECPVGEFLINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPESERPAI  373 (420)
T ss_dssp             ECS-SCTTEEEEEETTSE-EEEEETTCTTSCSEEEEESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred             EeC-CCCCEEEEEeCCCe-EEEEEcCCCcCchhhhhccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCCCCccce
Confidence            999 666 9999999998 999999987766777776 6678888865 566 5999999999999999988654421  


Q ss_pred             CCCCCeeeccCCCceeEEEEcCCCC---ceEEEEcCCcEEEEEC
Q 035558          213 GGLDPILAYTAGAEIEQLQWSSSQP---DWVAIAFSTKLQILRV  253 (253)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~i~vw~l  253 (253)
                      ....+.....|...|.+++|+|+++   .+++++.++.+.+|++
T Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          374 EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred             eccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence            1123456678899999999999998   7999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=230.21  Aligned_cols=236  Identities=13%  Similarity=0.209  Sum_probs=188.4

Q ss_pred             CCCCCceEEeec----C-cEEEEEccCCccccceeee-ecCCCCccccCCeeEEEecCCC---CCEEEEEeCCCeEEEEe
Q 035558            1 ECQKPDLLATSS----D-FLRVWRISDEDRRVELKSL-LNGNKNSEYCGPLTSFDWNEAE---PRRIGTSSIDTTCTIWD   71 (253)
Q Consensus         1 sp~~~~~l~~~~----~-~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~vwd   71 (253)
                      +|.+..++++++    + .|++|++.++    +.... ..+|.     .+|.+++|+ ++   +++|++|+.||.|++||
T Consensus        27 ~p~~~~l~~~~s~~~~d~~v~iw~~~~~----~~~~~~~~~~~-----~~v~~~~~~-~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           27 VPCSAKFVTMGNFARGTGVIQLYEIQHG----DLKLLREIEKA-----KPIKCGTFG-ATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             CTTSSEEEEEEC--CCCEEEEEEEECSS----SEEEEEEEEES-----SCEEEEECT-TCCTTTCCEEEEETTSCEEEEC
T ss_pred             cCCCceEEEecCccCCCcEEEEEeCCCC----cccceeeeccc-----CcEEEEEEc-CCCCCCceEEEecCCCeEEEEe
Confidence            456667777773    6 9999999885    43323 22566     899999999 55   79999999999999999


Q ss_pred             ccCce-eeeeeecccccEEEEE------ec-CCCeEEEEeCCCcEEEEEcCCCC-CeeeeeccCC-CCCCeeEEE----e
Q 035558           72 IEREA-VDTQLIAHDKEVYDIA------WG-GVGVFASVSADGSVRVFDLRDKE-HSTIIYESSE-PDTPLVRLG----W  137 (253)
Q Consensus        72 ~~~~~-~~~~~~~~~~~v~~~~------~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-~~~~i~~~~----~  137 (253)
                      +++++ .+..+.+|...|.+++      |+ ++++|++++.||.|++||+++++ ....+..... ....+.+++    |
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A           97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY  176 (357)
T ss_dssp             TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred             CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence            99888 8888999999999995      46 78899999999999999999886 3333322222 234788888    6


Q ss_pred             eCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec---CCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558          138 NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP---HSSCHICTAGDDSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  214 (253)
                      +| +++++++++.++. |++||+++..  ......|...|.+++|+|   ++ .+|++++.||.|++||+++......  
T Consensus       177 ~~-~~~~l~~~~~d~~-i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~--  249 (357)
T 3i2n_A          177 NQ-EERVVCAGYDNGD-IKLFDLRNMA--LRWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKG--  249 (357)
T ss_dssp             C--CCCEEEEEETTSE-EEEEETTTTE--EEEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTE--
T ss_pred             CC-CCCEEEEEccCCe-EEEEECccCc--eeeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccc--
Confidence            77 8999999999988 9999999865  344567889999999999   77 6999999999999999988654320  


Q ss_pred             CCCeeeccCCCceeEEEEcCCCC-ceEEEEcCCcEEEEEC
Q 035558          215 LDPILAYTAGAEIEQLQWSSSQP-DWVAIAFSTKLQILRV  253 (253)
Q Consensus       215 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~vw~l  253 (253)
                      .......+|...|++++|+|+++ .+++++.|+.|++|++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  289 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY  289 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence            00012238999999999999998 6889999999999984

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.3e-36  Score=231.88  Aligned_cols=211  Identities=18%  Similarity=0.247  Sum_probs=169.1

Q ss_pred             eeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeeeecccccEEEEEec---CCCeEEEEeCC
Q 035558           31 SLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQLIAHDKEVYDIAWG---GVGVFASVSAD  105 (253)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d  105 (253)
                      ..+.+|.     +.|++++|+ +++++|++|+.|++|++||+++++  .+..+.+|..+|.+++|+   ++++|++|+.|
T Consensus         7 ~~~~~H~-----~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A            7 TVDTSHE-----DMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             ------------CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             eeccccc-----CeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            3456888     899999999 899999999999999999998764  467788999999999997   37899999999


Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC-CCEEEEEEeCCCeEEEEECCCCCCC--eeeecccccceeEEEE
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD-PRYMATIIMDSAKVVVLDIRFPTLP--VVELQRHQASVNAIAW  182 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~  182 (253)
                      ++|++||++++... .......|...|.+++|+|.. +.+|++++.|+. |++||++.....  ...+.+|...+.+++|
T Consensus        81 ~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~-i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (316)
T 3bg1_A           81 RKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA-ISLLTYTGEGQWEVKKINNAHTIGCNAVSW  158 (316)
T ss_dssp             SCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC-EEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred             CEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC-EEEEecCCCCCcceeeeeccccCCcceEEE
Confidence            99999999876422 223345677799999999942 789999999999 999999875321  3456789999999999


Q ss_pred             ecCC----------------CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC----CceEEE
Q 035558          183 APHS----------------SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ----PDWVAI  242 (253)
Q Consensus       183 ~~~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~  242 (253)
                      +|+.                .++|++|+.|++|++||++......    ....+.+|...|.+++|+|++    ..++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~----~~~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK----EEQKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE----EEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc----eeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence            9973                1589999999999999997543110    013556899999999999986    678899


Q ss_pred             EcCCcEEEEEC
Q 035558          243 AFSTKLQILRV  253 (253)
Q Consensus       243 ~~~~~i~vw~l  253 (253)
                      +.|+.|++|++
T Consensus       235 s~D~~v~iw~~  245 (316)
T 3bg1_A          235 SQDGRVFIWTC  245 (316)
T ss_dssp             ETTCEEEEEEC
T ss_pred             cCCCeEEEEEc
Confidence            99999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=251.19  Aligned_cols=237  Identities=19%  Similarity=0.310  Sum_probs=197.5

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC--CCEEEEEeCCCeEEEEeccCce--e
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE--PRRIGTSSIDTTCTIWDIEREA--V   77 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~   77 (253)
                      ++.+|++|+ + .|++|++..+  ..+....+.+|.     .+|++++|+ ++  +++|++|+.||.|++||+.+++  .
T Consensus        20 dg~~latg~~dg~I~vwd~~~~--~~~~~~~l~~h~-----~~V~~l~~s-~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~   91 (753)
T 3jro_A           20 YGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHE-----GPVWRVDWA-HPKFGTILASCSYDGKVLIWKEENGRWSQ   91 (753)
T ss_dssp             SSCCEEEEETTTEEEEEEEETT--EEEEEEEECCCS-----SCEEEEEEC-CTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCCeEEEEECCCcEEEEecCCC--CCccceeccCCc-----CceEEEEec-CCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence            566777776 5 9999999842  236778889998     899999998 55  8999999999999999999886  6


Q ss_pred             eeeeecccccEEEEEec-C--CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC------------CC
Q 035558           78 DTQLIAHDKEVYDIAWG-G--VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ------------DP  142 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~  142 (253)
                      ...+.+|...|.+++|+ +  ++.+++|+.||.|++||+++....... ....+...|.+++|+|.            ++
T Consensus        92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~  170 (753)
T 3jro_A           92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (753)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEEEEECCCC---------CGGG
T ss_pred             cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEEEEecCcccccccccccCCCC
Confidence            77778899999999999 7  899999999999999999987433222 22356679999999995            48


Q ss_pred             CEEEEEEeCCCeEEEEECCCCC---CCeeeecccccceeEEEEecC---CCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558          143 RYMATIIMDSAKVVVLDIRFPT---LPVVELQRHQASVNAIAWAPH---SSCHICTAGDDSQALIWDLSSMGQPVEGGLD  216 (253)
Q Consensus       143 ~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  216 (253)
                      .++++++.|+. |++||+++..   .+...+.+|...|++++|+|+   + .+|++++.||.|++||+++...+..  ..
T Consensus       171 ~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~--~~  246 (753)
T 3jro_A          171 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK--KT  246 (753)
T ss_dssp             CCEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCB--CC
T ss_pred             CEEEEEECCCe-EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcce--eE
Confidence            89999999999 9999998765   235667889999999999999   6 6999999999999999998653220  01


Q ss_pred             CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          217 PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       217 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ......|...|++++|+|+++.+++++.|+.|++|++
T Consensus       247 ~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            1234468899999999999999999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=230.10  Aligned_cols=236  Identities=13%  Similarity=0.226  Sum_probs=188.1

Q ss_pred             CCc-eEEeec-C-cEEEEEc----cCCcc--ccceeeeecC----CC-CccccCCeeEEEecCCCCCEEEEEeCCCeEEE
Q 035558            4 KPD-LLATSS-D-FLRVWRI----SDEDR--RVELKSLLNG----NK-NSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTI   69 (253)
Q Consensus         4 ~~~-~l~~~~-~-~v~iw~~----~~~~~--~~~~~~~~~~----~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v   69 (253)
                      ++. +|++++ + .|++|++    ..+..  .......+..    |. ...+...|++++|+ +++++|++|+.||.|++
T Consensus        56 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i  134 (425)
T 1r5m_A           56 LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS-HDGNSIVTGVENGELRL  134 (425)
T ss_dssp             SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC-TTSSEEEEEETTSCEEE
T ss_pred             CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc-CCCCEEEEEeCCCeEEE
Confidence            444 888877 4 9999999    76510  0002222322    20 00011799999999 79999999999999999


Q ss_pred             EeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-------------------------
Q 035558           70 WDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY-------------------------  123 (253)
Q Consensus        70 wd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------  123 (253)
                      || .+++.+..+..|...|.+++|+ ++++|++++.||.|++||+++++....+.                         
T Consensus       135 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (425)
T 1r5m_A          135 WN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE  213 (425)
T ss_dssp             EE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCE
T ss_pred             Ee-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE
Confidence            99 5677888888999999999999 99999999999999999998764322111                         


Q ss_pred             ----------------------------ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccc
Q 035558          124 ----------------------------ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQA  175 (253)
Q Consensus       124 ----------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  175 (253)
                                                  ....+...|.+++|+| ++++|++++.++. |++||+++.. ++..+..|..
T Consensus       214 ~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~-i~i~d~~~~~-~~~~~~~~~~  290 (425)
T 1r5m_A          214 WVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGT-LRIWHGGNGN-SQNCFYGHSQ  290 (425)
T ss_dssp             EEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSC-EEEECSSSBS-CSEEECCCSS
T ss_pred             EcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCE-EEEEECCCCc-cceEecCCCc
Confidence                                        1224566899999999 8899999999998 9999999865 4778888999


Q ss_pred             ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          176 SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       176 ~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .|.+++|+|++  ++++++.|+.|++||+++....       .....|..+|.+++|+|+++.+++++.|+.|++|++
T Consensus       291 ~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          291 SIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLL-------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             CEEEEEEETTT--EEEEEETTSEEEEEETTTTEEE-------EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             cEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEe-------EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            99999999987  8999999999999999886643       356678999999999999998999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.9e-35  Score=232.03  Aligned_cols=230  Identities=13%  Similarity=0.075  Sum_probs=178.9

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |.++.+|++++ + .|++||+..     .....+..+..  +...|.+++|+ +++++|++|+.|+.|++||+ +++.+.
T Consensus       128 ~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~--~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~  198 (383)
T 3ei3_B          128 QFNTNQLFVSSIRGATTLRDFSG-----SVIQVFAKTDS--WDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIF  198 (383)
T ss_dssp             TTEEEEEEEEETTTEEEEEETTS-----CEEEEEECCCC--SSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEECCC-----CceEEEeccCC--CCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEE
Confidence            54667888877 5 999999986     33444433321  11789999999 89999999999999999999 477888


Q ss_pred             eeecccccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+.+|...|.+++|+ ++. ++++++.|+.|++||+++.+..........+...|.+++|+|.++.+|++++.|+. |++
T Consensus       199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~i  277 (383)
T 3ei3_B          199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRV  277 (383)
T ss_dssp             EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEE
T ss_pred             EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEE
Confidence            889999999999999 777 99999999999999999843211111111466799999999977889999999998 999


Q ss_pred             EECCCCCCCeeeecccc-----------------cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558          158 LDIRFPTLPVVELQRHQ-----------------ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                      ||+++... ...+..|.                 ..+..++|+|++ ++  +++.|+.|++||+.+++...       .+
T Consensus       278 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~-------~l  346 (383)
T 3ei3_B          278 YSSYDWSK-PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVH-------QL  346 (383)
T ss_dssp             EETTBTTS-CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEE-------EE
T ss_pred             EECCCCcc-ccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceee-------ee
Confidence            99998664 34444332                 334457777777 35  88899999999999876433       34


Q ss_pred             cc--CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          221 YT--AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       221 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .+  |...+..++|+|+++.+++++ |+.|++|++
T Consensus       347 ~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          347 RDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR  380 (383)
T ss_dssp             CBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred             cCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence            33  567788889999998776775 999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.3e-35  Score=250.65  Aligned_cols=230  Identities=16%  Similarity=0.145  Sum_probs=198.8

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ + .|++||+.++    +....+.+|.     .+|.+++|+ +++++|++|+.||.|++||+.+++.+..
T Consensus        23 p~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~-----~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~   92 (814)
T 3mkq_A           23 PTEPWVLTTLYSGRVEIWNYETQ----VEVRSIQVTE-----TPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (814)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTT----EEEEEEECCS-----SCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCC----ceEEEEecCC-----CcEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            3566777776 5 9999999887    7888899998     899999999 8999999999999999999999999999


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      +.+|...|++++|+ ++.+|++++.||.|++||++++...  ......+...|.+++|+|.++..+++++.++. |++||
T Consensus        93 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~vwd  169 (814)
T 3mkq_A           93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWS  169 (814)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE--EEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEE
T ss_pred             EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE--EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe-EEEEE
Confidence            99999999999999 9999999999999999999887422  22333566689999999977889999999998 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEec--CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAP--HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ++...........+...+.+++|+|  ++ .+|++++.||.|++||++++...       ....+|...|.+++|+|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~-------~~~~~~~~~v~~~~~~~~~~  241 (814)
T 3mkq_A          170 LGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCV-------ATLEGHMSNVSFAVFHPTLP  241 (814)
T ss_dssp             TTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEE-------EEEECCSSCEEEEEECSSSS
T ss_pred             CCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEE-------EEEcCCCCCEEEEEEcCCCC
Confidence            9876653333334458999999999  88 59999999999999999886643       36677999999999999999


Q ss_pred             ceEEEEcCCcEEEEEC
Q 035558          238 DWVAIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~l  253 (253)
                      .+++++.|+.|++|++
T Consensus       242 ~l~~~~~dg~v~vwd~  257 (814)
T 3mkq_A          242 IIISGSEDGTLKIWNS  257 (814)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             EEEEEeCCCeEEEEEC
Confidence            8999999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=234.35  Aligned_cols=239  Identities=14%  Similarity=0.208  Sum_probs=182.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCc-------cccceeeeecCCCCc-------cccCCeeEEEecCCCC--CEEEEEeCC
Q 035558            3 QKPDLLATSS-D-FLRVWRISDED-------RRVELKSLLNGNKNS-------EYCGPLTSFDWNEAEP--RRIGTSSID   64 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~--~~l~~~~~d   64 (253)
                      +++.+||+|+ + .|+||++..+.       ...+....+.+|...       .....|++++|+ +++  ..|++++.|
T Consensus        38 ~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~-~~~~~~~l~s~s~d  116 (447)
T 3dw8_B           38 HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL-PQKNAAQFLLSTND  116 (447)
T ss_dssp             SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC-CCCSSSEEEEEECS
T ss_pred             CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc-CCCCcceEEEeCCC
Confidence            3677888887 5 99999998752       122357778888511       011569999999 666  789999999


Q ss_pred             CeEEEEeccCceee---------------------------------------ee-eecccccEEEEEec-CCCeEEEEe
Q 035558           65 TTCTIWDIEREAVD---------------------------------------TQ-LIAHDKEVYDIAWG-GVGVFASVS  103 (253)
Q Consensus        65 g~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~-~~~~l~~~~  103 (253)
                      +.|++||+.+++..                                       .. ..+|...|.+++|+ ++++|++| 
T Consensus       117 ~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  195 (447)
T 3dw8_B          117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-  195 (447)
T ss_dssp             SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-
T ss_pred             CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-
Confidence            99999999764432                                       12 35799999999999 99999998 


Q ss_pred             CCCcEEEEEcCCCCCeeeee-----ccCCCCCCeeEEEeeCCCC-CEEEEEEeCCCeEEEEECCCCCC---Ceeeecccc
Q 035558          104 ADGSVRVFDLRDKEHSTIIY-----ESSEPDTPLVRLGWNKQDP-RYMATIIMDSAKVVVLDIRFPTL---PVVELQRHQ  174 (253)
Q Consensus       104 ~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~  174 (253)
                      .|+.|++||+++........     ....+...|.+++|+| ++ ++|++++.|+. |++||+++...   .+..+..|.
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~  273 (447)
T 3dw8_B          196 DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT-IRLCDMRASALCDRHSKLFEEPE  273 (447)
T ss_dssp             CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC-EEEEETTTCSSSCTTCEEECCC-
T ss_pred             CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe-EEEEECcCCccccceeeEeccCC
Confidence            79999999998543221111     2346677999999999 66 99999999998 99999998653   256777777


Q ss_pred             c------------ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc---------------e
Q 035558          175 A------------SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE---------------I  227 (253)
Q Consensus       175 ~------------~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------v  227 (253)
                      .            .|.+++|+|++ ++|++++. +.|++||++....+.      ..+..|...               +
T Consensus       274 ~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~i~~~  345 (447)
T 3dw8_B          274 DPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPV------ETYQVHEYLRSKLCSLYENDCIFDK  345 (447)
T ss_dssp             ----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCS------CCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred             CccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcccc------ceeeccccccccccccccccccccc
Confidence            5            89999999999 69999998 999999998733332      244445321               3


Q ss_pred             eEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          228 EQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..++|+|+++++++++.|+.|++|++
T Consensus       346 ~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          346 FECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             CCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             eEEEECCCCCEEEEeccCCEEEEEEc
Confidence            34999999999999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.3e-34  Score=225.31  Aligned_cols=237  Identities=15%  Similarity=0.195  Sum_probs=186.1

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee---e
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV---D   78 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~   78 (253)
                      ++.+|++++ + .|++||+..+  .......+..|.     ..|.+++|+ +++++|++++.|+.|++||++.++.   .
T Consensus        63 ~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  134 (372)
T 1k8k_C           63 DSNRIVTCGTDRNAYVWTLKGR--TWKPTLVILRIN-----RAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVC  134 (372)
T ss_dssp             TTTEEEEEETTSCEEEEEEETT--EEEEEEECCCCS-----SCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCC--eeeeeEEeecCC-----CceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence            567777776 5 9999999875  112233346677     899999999 8899999999999999999988762   2


Q ss_pred             ee-eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC---------------CeeeeeccCCCCCCeeEEEeeCCC
Q 035558           79 TQ-LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE---------------HSTIIYESSEPDTPLVRLGWNKQD  141 (253)
Q Consensus        79 ~~-~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~  141 (253)
                      .. ...|...|.+++|+ ++++|++++.||.|++||++...               ....+.....+...+.+++|+| +
T Consensus       135 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  213 (372)
T 1k8k_C          135 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-N  213 (372)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-S
T ss_pred             eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-C
Confidence            23 35688999999999 99999999999999999975211               1123344446777999999999 8


Q ss_pred             CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC--CCCCC--------
Q 035558          142 PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS--MGQPV--------  211 (253)
Q Consensus       142 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~--------  211 (253)
                      +++|++++.|+. |++||+++.+ ++..+..|...|.+++|+|++ .+|+++ .|+.|++|++..  +.-..        
T Consensus       214 ~~~l~~~~~d~~-i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~  289 (372)
T 1k8k_C          214 GSRVAWVSHDST-VCLADADKKM-AVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPK  289 (372)
T ss_dssp             SSEEEEEETTTE-EEEEEGGGTT-EEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred             CCEEEEEeCCCE-EEEEECCCCc-eeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccc
Confidence            999999999998 9999999866 488888999999999999998 577777 899999999988  31000        


Q ss_pred             -----------------CCCCC-------CeeeccCCCceeEEEEc-CCC---CceEEEEcCCcEEEEEC
Q 035558          212 -----------------EGGLD-------PILAYTAGAEIEQLQWS-SSQ---PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       212 -----------------~~~~~-------~~~~~~~~~~v~~~~~~-~~~---~~~~~~~~~~~i~vw~l  253 (253)
                                       .....       .....+|..+|++++|+ +++   .++++++.|+.|++|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                             00000       11224899999999977 555   78999999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-34  Score=244.55  Aligned_cols=232  Identities=18%  Similarity=0.249  Sum_probs=183.3

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ | .|++||+..+    +....+.+|.     ..|.+++|+ +++++|++|+.|++|++||.........
T Consensus       440 ~~g~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~-----~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~~~  509 (694)
T 3dm0_A          440 SDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHT-----KDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTI  509 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTT----EEEEEEECCS-----SCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCC----cceeEEeCCC-----CCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcceee
Confidence            3567888877 5 9999999987    7788899999     899999999 8999999999999999999875543322


Q ss_pred             ---eecccccEEEEEec-CC--CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           81 ---LIAHDKEVYDIAWG-GV--GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        81 ---~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                         ..+|...|.+++|+ ++  ..+++++.|++|++||+++.+..   .....|.+.|++++|+| ++++|++++.|+. 
T Consensus       510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~---~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~-  584 (694)
T 3dm0_A          510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR---STLAGHTGYVSTVAVSP-DGSLCASGGKDGV-  584 (694)
T ss_dssp             CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEECT-TSSEEEEEETTSB-
T ss_pred             ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE---EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCe-
Confidence               24688999999999 54  58999999999999999987643   33456777999999999 9999999999999 


Q ss_pred             EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCC------------CCeeecc
Q 035558          155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL------------DPILAYT  222 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~  222 (253)
                      |++||+++.+. +..+. +...|.+++|+|++ .+|++++ |+.|++||+++.........            .+.....
T Consensus       585 i~iwd~~~~~~-~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (694)
T 3dm0_A          585 VLLWDLAEGKK-LYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR  660 (694)
T ss_dssp             CEEEETTTTEE-EECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------
T ss_pred             EEEEECCCCce-EEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCc
Confidence            99999998653 55554 45679999999998 4666554 67799999988653210000            0001112


Q ss_pred             CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          223 AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       223 ~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +...+++++|+|++++|++++.|+.|++|++
T Consensus       661 ~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          661 KVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             eeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            2334789999999999999999999999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.5e-35  Score=229.80  Aligned_cols=238  Identities=16%  Similarity=0.188  Sum_probs=177.6

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---ee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VD   78 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~   78 (253)
                      ++++|++++ | .|++||+..+ ........+.+|.     ..|.+++|+ +++++|++|+.|+.|++||+++++   ..
T Consensus        66 ~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  138 (377)
T 3dwl_C           66 KSNRIVTCSQDRNAYVYEKRPD-GTWKQTLVLLRLN-----RAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWVS  138 (377)
T ss_dssp             TTCCEEEEETTSSEEEC-------CCCCEEECCCCS-----SCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred             CCCEEEEEeCCCeEEEEEcCCC-CceeeeeEecccC-----CceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccceee
Confidence            466777777 5 9999999885 2233567777888     899999999 799999999999999999999877   46


Q ss_pred             eeeec-ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCC---------------CeeeeeccCCCCCCeeEEEeeCCC
Q 035558           79 TQLIA-HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKE---------------HSTIIYESSEPDTPLVRLGWNKQD  141 (253)
Q Consensus        79 ~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~  141 (253)
                      ..+.. |...|.+++|+ ++++|++++.|+.|++||++...               ....+... .+...|.+++|+| +
T Consensus       139 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~  216 (377)
T 3dwl_C          139 KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-S  216 (377)
T ss_dssp             EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-T
T ss_pred             eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-C
Confidence            67777 99999999999 99999999999999999996432               11223333 7777999999999 8


Q ss_pred             CCEEEEEEeCCCeEEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC----CC-
Q 035558          142 PRYMATIIMDSAKVVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV----EG-  213 (253)
Q Consensus       142 ~~~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~-  213 (253)
                      +++|++++.|+. |++||+++...+   +..+..|...|.+++|+|++ ++|++++.|+.+ +|+........    .. 
T Consensus       217 ~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  293 (377)
T 3dwl_C          217 GNALAYAGHDSS-VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAG  293 (377)
T ss_dssp             SSCEEEEETTTE-EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred             CCEEEEEeCCCc-EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence            999999999998 999999987642   67788899999999999999 688888866655 77665222000    00 


Q ss_pred             ---C-------------------------------------CCCeeeccCCCceeEEEEcCCCCc----eEEEEcCCcEE
Q 035558          214 ---G-------------------------------------LDPILAYTAGAEIEQLQWSSSQPD----WVAIAFSTKLQ  249 (253)
Q Consensus       214 ---~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~i~  249 (253)
                         .                                     ........|...|+++++.+....    +++++.|+.|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~  373 (377)
T 3dwl_C          294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV  373 (377)
T ss_dssp             CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence               0                                     000011239999999998776543    88999999999


Q ss_pred             EEEC
Q 035558          250 ILRV  253 (253)
Q Consensus       250 vw~l  253 (253)
                      +|+|
T Consensus       374 iWdl  377 (377)
T 3dwl_C          374 LWTL  377 (377)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.5e-35  Score=231.15  Aligned_cols=230  Identities=14%  Similarity=0.201  Sum_probs=191.2

Q ss_pred             ceEEeec-C-cEEEEEccCCc--cccceeeeecCCCCccccCCeeEEEecCCC----C---CEEEEEeCCCeEEEEeccC
Q 035558            6 DLLATSS-D-FLRVWRISDED--RRVELKSLLNGNKNSEYCGPLTSFDWNEAE----P---RRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~---~~l~~~~~dg~i~vwd~~~   74 (253)
                      .+|++++ + .|++|++....  ........+.+|.     .+|.+++|+ ++    +   ++|++++.||.|++||+.+
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~-~~~~~~g~~~~~l~s~~~dg~i~iw~~~~  100 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK-----SGLHHVDVL-QAIERDAFELCLVATTSFSGDLLFYRITR  100 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT-----TCEEEEEEE-EEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC-----CcEEEEEEe-cccccCCccccEEEEEcCCCCEEEEEccC
Confidence            5777776 5 99999998861  1123677888898     899999999 77    8   9999999999999999998


Q ss_pred             cee-----eeeeecc-----cccEEEEEec-----CCCe-EEEEeCCCcEEEEEcCC------CCCee-----eeec---
Q 035558           75 EAV-----DTQLIAH-----DKEVYDIAWG-----GVGV-FASVSADGSVRVFDLRD------KEHST-----IIYE---  124 (253)
Q Consensus        75 ~~~-----~~~~~~~-----~~~v~~~~~~-----~~~~-l~~~~~dg~i~i~d~~~------~~~~~-----~~~~---  124 (253)
                      ++.     ...+..|     ...|.+++|+     ++++ |++++.||.|++||+++      .+...     .+..   
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (397)
T 1sq9_A          101 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE  180 (397)
T ss_dssp             CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred             CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeec
Confidence            876     7788888     5999999998     4678 99999999999999998      55433     2211   


Q ss_pred             -cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc---c---ccceeEEEEecCCCCeEEEecCC-
Q 035558          125 -SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR---H---QASVNAIAWAPHSSCHICTAGDD-  196 (253)
Q Consensus       125 -~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~l~~~~~d-  196 (253)
                       ...+...+.+++|+| ++ ++++++.++. |++||+++.. ++..+..   |   ...|.+++|+|++ .+|++++.| 
T Consensus       181 ~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~-i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~  255 (397)
T 1sq9_A          181 SPMTPSQFATSVDISE-RG-LIATGFNNGT-VQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSN  255 (397)
T ss_dssp             CSSSSCCCCCEEEECT-TS-EEEEECTTSE-EEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEET
T ss_pred             cccCCCCCceEEEECC-Cc-eEEEEeCCCc-EEEEECCCCc-eeEEEeccccccccCCccceEEECCCC-CEEEEEecCC
Confidence             134566899999999 77 9999998888 9999999855 4777887   8   9999999999998 699999999 


Q ss_pred             --CcEEEEeccCCCCCCCCCCCCeeecc-------------CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          197 --SQALIWDLSSMGQPVEGGLDPILAYT-------------AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       197 --g~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                        |.|++||+++.+...       ....             |...|.+++|+|+++++++++.|+.|++|++
T Consensus       256 ~~g~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          256 SFGCITLYETEFGERIG-------SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             TEEEEEEEETTTCCEEE-------EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCceEEEEECCCCcccc-------eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence              999999999876433       4445             8999999999999999999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.6e-34  Score=223.94  Aligned_cols=221  Identities=18%  Similarity=0.213  Sum_probs=180.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----eeeeeecccccE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----VDTQLIAHDKEV   88 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v   88 (253)
                      .+.++....  +..++..+|++|.     +.|++|+|+|.++++|++|+.|++|++||+.+.+     +...+.+|...|
T Consensus        17 ~~~~~~~~~--~~~~l~~tL~GH~-----~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V   89 (340)
T 4aow_A           17 NLYFQSMMT--EQMTLRGTLKGHN-----GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV   89 (340)
T ss_dssp             -----------CEEEEEEEECCCS-----SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCE
T ss_pred             cEEEEEccC--CceEEEEEECCcc-----CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCE
Confidence            344444443  4456778899999     9999999995557899999999999999987653     456778999999


Q ss_pred             EEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe
Q 035558           89 YDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV  167 (253)
Q Consensus        89 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~  167 (253)
                      .+++|+ ++++|++++.|+.|++|+..........   ..+...+..+.+++ ++.++++++.|+. +++||+.......
T Consensus        90 ~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~l~s~s~d~~-~~~~d~~~~~~~~  164 (340)
T 4aow_A           90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF---VGHTKDVLSVAFSS-DNRQIVSGSRDKT-IKLWNTLGVCKYT  164 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEECT-TSSCEEEEETTSC-EEEECTTSCEEEE
T ss_pred             EEEEECCCCCEEEEEcccccceEEeecccceeeee---cCCCCceeEEEEee-cCccceeecCCCe-EEEEEeCCCceEE
Confidence            999999 9999999999999999999887633332   33444788888998 8899999999999 9999998765545


Q ss_pred             eeecccccceeEEEEecCCC-CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558          168 VELQRHQASVNAIAWAPHSS-CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST  246 (253)
Q Consensus       168 ~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  246 (253)
                      .....|...+..++|++++. .++++++.|+.|++||+++.....       ...+|..+|++++|+|+++++++++.|+
T Consensus       165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-------~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-------NHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee-------EecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            66678999999999998753 367899999999999999876443       6678999999999999999999999999


Q ss_pred             cEEEEEC
Q 035558          247 KLQILRV  253 (253)
Q Consensus       247 ~i~vw~l  253 (253)
                      .|++|++
T Consensus       238 ~i~iwd~  244 (340)
T 4aow_A          238 QAMLWDL  244 (340)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEe
Confidence            9999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-34  Score=229.51  Aligned_cols=231  Identities=16%  Similarity=0.246  Sum_probs=190.5

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee--
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT--   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--   79 (253)
                      ++.+|++++ + .|++|+...     +....+.+|.     ..|.+++|+ +++++|++++.||.|++||+++++.+.  
T Consensus       119 ~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWNKTG-----ALLNVLNFHR-----APIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHF  187 (425)
T ss_dssp             TSSEEEEEETTSCEEEEETTS-----CEEEEECCCC-----SCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCC-----CeeeeccCCC-----ccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence            567777776 5 999999443     7778888898     899999999 899999999999999999998765332  


Q ss_pred             ------------------------------------------------------eeecccccEEEEEec-CCCeEEEEeC
Q 035558           80 ------------------------------------------------------QLIAHDKEVYDIAWG-GVGVFASVSA  104 (253)
Q Consensus        80 ------------------------------------------------------~~~~~~~~v~~~~~~-~~~~l~~~~~  104 (253)
                                                                            .+..|...|.+++|+ ++++|++++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  267 (425)
T 1r5m_A          188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD  267 (425)
T ss_dssp             CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence                                                                  233577889999999 9999999999


Q ss_pred             CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec
Q 035558          105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP  184 (253)
Q Consensus       105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~  184 (253)
                      ||.|++||+++.+....+   ..+...+.+++|+| ++ ++++++.++. |++||+++.. .+..+..|...|.+++|+|
T Consensus       268 d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~-~~-~l~~~~~d~~-i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          268 DGTLRIWHGGNGNSQNCF---YGHSQSIVSASWVG-DD-KVISCSMDGS-VRLWSLKQNT-LLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             TSCEEEECSSSBSCSEEE---CCCSSCEEEEEEET-TT-EEEEEETTSE-EEEEETTTTE-EEEEEECTTCCEEEEEECT
T ss_pred             CCEEEEEECCCCccceEe---cCCCccEEEEEECC-CC-EEEEEeCCCc-EEEEECCCCc-EeEecccCCccEEEEEEcC
Confidence            999999999987754443   34666999999999 66 9999999988 9999998865 4778888999999999999


Q ss_pred             CCCCeEEEecCCCcEEEEeccCCCCCCCC-------------CCCCeeeccCCC--ceeEEEEcCCCCceEEEEcCCcEE
Q 035558          185 HSSCHICTAGDDSQALIWDLSSMGQPVEG-------------GLDPILAYTAGA--EIEQLQWSSSQPDWVAIAFSTKLQ  249 (253)
Q Consensus       185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~i~  249 (253)
                      ++ .+|++++.||.|++||+++...+...             ......+..|..  .|.+++|+|+++++++++.|+.|+
T Consensus       341 ~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  419 (425)
T 1r5m_A          341 DG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS  419 (425)
T ss_dssp             TS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred             CC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence            99 69999999999999999876511000             001235556755  999999999999888999999999


Q ss_pred             EEEC
Q 035558          250 ILRV  253 (253)
Q Consensus       250 vw~l  253 (253)
                      +|++
T Consensus       420 iw~~  423 (425)
T 1r5m_A          420 VVAI  423 (425)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            9986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2e-34  Score=226.53  Aligned_cols=227  Identities=18%  Similarity=0.275  Sum_probs=180.7

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +.+|++++ + .|++|++...  .......+.+|.     ..|++++|+ +++++|++++.||.|++||+++++... +.
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h~-----~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~  124 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDS--GQTIPKAQQMHT-----GPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSNQAIQ-IA  124 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTT--SCEEEEEEEECS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred             ceEEEEECCCCcEEEEEcCCC--CceeEEEecccc-----CCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCCCCcee-ec
Confidence            78888887 4 9999999862  113337788898     899999999 799999999999999999999888666 56


Q ss_pred             cccccEEEEEe--c-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC---------------------------------
Q 035558           83 AHDKEVYDIAW--G-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS---------------------------------  126 (253)
Q Consensus        83 ~~~~~v~~~~~--~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------  126 (253)
                      .|...|.+++|  + ++.+|++++.||.|++||+++++....+....                                 
T Consensus       125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  204 (368)
T 3mmy_A          125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEF  204 (368)
T ss_dssp             ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE
T ss_pred             cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchh
Confidence            69999999999  7 88899999999999999999876443332110                                 


Q ss_pred             -----CCCCCeeEEEeeCCCCCE----EEEEEeCCCeEEEEECCCCC--CCeeeeccccc------------ceeEEEEe
Q 035558          127 -----EPDTPLVRLGWNKQDPRY----MATIIMDSAKVVVLDIRFPT--LPVVELQRHQA------------SVNAIAWA  183 (253)
Q Consensus       127 -----~~~~~i~~~~~~~~~~~~----l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~------------~i~~~~~~  183 (253)
                           .......++++.+ +...    +++++.++. |++||++...  ..+..+..|..            .|++++|+
T Consensus       205 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  282 (368)
T 3mmy_A          205 RRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH  282 (368)
T ss_dssp             EECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred             hhccccccCCCceEEEcc-cCCCCCCeEEEecCCCc-EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence                 1112344555544 3333    888888888 9999998763  23566677766            79999999


Q ss_pred             cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558          184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI  250 (253)
Q Consensus       184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v  250 (253)
                      |++ ++|++++.||.|++||+++++...       .+..|..+|.+++|+|+++++++++.|+..+.
T Consensus       283 p~~-~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          283 PVH-GTLATVGSDGRFSFWDKDARTKLK-------TSEQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             TTT-CCEEEEETTSCEEEEETTTTEEEE-------ECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             cCC-CEEEEEccCCeEEEEECCCCcEEE-------EecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence            999 699999999999999999876433       66688999999999999999999988875443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-34  Score=230.41  Aligned_cols=205  Identities=14%  Similarity=0.133  Sum_probs=166.6

Q ss_pred             CCeeEEEecCCCCCEE-EEEeCCCeEEEEecc--Cceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC
Q 035558           43 GPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIE--REAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK  116 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  116 (253)
                      ..|.+++|+ +++++| ++|+.||.|++||+.  +++.+..+.  .|...|.+++|+ ++++|++++.+|.|++|++.+.
T Consensus       103 ~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~  181 (450)
T 2vdu_B          103 SYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI  181 (450)
T ss_dssp             CCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred             CceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc
Confidence            479999999 788885 899999999999999  788777776  567899999999 9999999999999999999887


Q ss_pred             CCee-eeeccCCCCCCeeEEEeeCCC---CCEEEEEEeCCCeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeEE
Q 035558          117 EHST-IIYESSEPDTPLVRLGWNKQD---PRYMATIIMDSAKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       117 ~~~~-~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~  191 (253)
                      .... .......|...|.+++|+| +   +.+|++++.|+. |++||+++... +.. +.+|...|.+++|+ ++ .+|+
T Consensus       182 ~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~-i~vwd~~~~~~-~~~~~~~h~~~v~~~~~s-d~-~~l~  256 (450)
T 2vdu_B          182 PEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEH-IKISHYPQCFI-VDKWLFGHKHFVSSICCG-KD-YLLL  256 (450)
T ss_dssp             CCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSC-EEEEEESCTTC-EEEECCCCSSCEEEEEEC-ST-TEEE
T ss_pred             ccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCc-EEEEECCCCce-eeeeecCCCCceEEEEEC-CC-CEEE
Confidence            6443 2223345667999999999 7   889999999998 99999998664 555 66899999999999 88 6999


Q ss_pred             EecCCCcEEEEeccCCCCCCCCCCC----C--------------eeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558          192 TAGDDSQALIWDLSSMGQPVEGGLD----P--------------ILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILR  252 (253)
Q Consensus       192 ~~~~dg~i~iwd~~~~~~~~~~~~~----~--------------~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~  252 (253)
                      +++.|+.|++||+++++........    +              .........|.+++|+|+++++++++ .++.|++|+
T Consensus       257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            9999999999999987633200000    0              00002346799999999999888888 899999998


Q ss_pred             C
Q 035558          253 V  253 (253)
Q Consensus       253 l  253 (253)
                      +
T Consensus       337 ~  337 (450)
T 2vdu_B          337 M  337 (450)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=226.88  Aligned_cols=213  Identities=19%  Similarity=0.304  Sum_probs=179.6

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc--CceeeeeeecccccEEEEEec-C--CCeEEEE
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE--REAVDTQLIAHDKEVYDIAWG-G--VGVFASV  102 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~-~--~~~l~~~  102 (253)
                      ++...+++|.     .+|++++|+ +++++|++|+.||.|++||+.  +.+.+..+.+|...|++++|+ +  +++|+++
T Consensus         2 ~~~~~~~~h~-----~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   75 (379)
T 3jrp_A            2 SMVVIANAHN-----ELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC   75 (379)
T ss_dssp             ---CCEEECC-----CCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             CccEEecCCc-----ccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence            4567788999     899999999 899999999999999999998  566778888999999999998 5  8999999


Q ss_pred             eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC--CCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeE
Q 035558          103 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD--PRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNA  179 (253)
Q Consensus       103 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~  179 (253)
                      +.||.|++||+++++.. .......+...|.+++|+| +  +.++++++.++. |++||++... .....+..|...|.+
T Consensus        76 ~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~v~~  152 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGK-VSVVEFKENGTTSPIIIDAHAIGVNS  152 (379)
T ss_dssp             ETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSE-EEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred             ccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCc-EEEEecCCCCceeeEEecCCCCceEE
Confidence            99999999999987522 2333445677999999999 6  899999999998 9999998864 235567789999999


Q ss_pred             EEEec-------------CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC---CCceEEEE
Q 035558          180 IAWAP-------------HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS---QPDWVAIA  243 (253)
Q Consensus       180 ~~~~~-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~  243 (253)
                      ++|+|             ++ .+|++++.||.|++||++......   .......+|...|.+++|+|+   +..+++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          153 ASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTY---VLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             EEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEE---EEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcce---eeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            99999             56 699999999999999998765332   112355679999999999999   78888999


Q ss_pred             cCCcEEEEEC
Q 035558          244 FSTKLQILRV  253 (253)
Q Consensus       244 ~~~~i~vw~l  253 (253)
                      .|+.|++|++
T Consensus       229 ~dg~i~iwd~  238 (379)
T 3jrp_A          229 QDRTCIIWTQ  238 (379)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCEEEEEeC
Confidence            9999999984

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=224.84  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=174.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc--------
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE--------   73 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--------   73 (253)
                      ++.+|++|+ | .|++||+.++    +.+..+.  .     ..|.++.|+ ++   +++++.|++|++|+..        
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~----~~~~~~~--~-----~~v~~~~~~-~~---~~s~s~D~~i~~w~~~~~~~~~~~  111 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDS----KTITTIT--T-----PNPRTGGEH-PA---IISRGPCNRLLLLYPGNQITILDS  111 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSS----SCEEEEE--E-----ECCCTTCCC-CS---EEEECSTTEEEEEETTTEEEEEET
T ss_pred             CCCEEEEECCCCcEEEEECCCC----cEEEEEe--c-----CCceeeeeC-Cc---eEEecCCCeEEEEEccCceEEeec
Confidence            456788887 5 9999999987    5555555  2     578889998 44   9999999999999765        


Q ss_pred             -Cceeeeeee-cccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           74 -REAVDTQLI-AHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        74 -~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                       +++.+..+. +|..+|.+++|+   +++++++++.||+|++||+++++.....  ...+...+.+++|+| ++.++++|
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~~i~~~~~~p-dg~~lasg  188 (343)
T 3lrv_A          112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH--SAKSDVEYSSGVLHK-DSLLLALY  188 (343)
T ss_dssp             TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE--CCCSSCCCCEEEECT-TSCEEEEE
T ss_pred             CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE--ecCCCCceEEEEECC-CCCEEEEE
Confidence             334344443 566899999998   5789999999999999999988753222  223444799999999 99999999


Q ss_pred             EeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          149 IMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      +.|+. |++||+++.......+.. |..+|++++|+|++ .+|++++ |+.|++||+++......    ......|..++
T Consensus       189 ~~dg~-i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~----~~~~~~~~~~~  261 (343)
T 3lrv_A          189 SPDGI-LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLA----YPTYTIPEFKT  261 (343)
T ss_dssp             CTTSC-EEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBS----SCCCBC-----
T ss_pred             cCCCE-EEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCccee----ecccccccccc
Confidence            99999 999999987753367777 99999999999999 6999999 55999999998764420    01111233444


Q ss_pred             --eEEEEcCCCCceEEEEc-CCcEEEEEC
Q 035558          228 --EQLQWSSSQPDWVAIAF-STKLQILRV  253 (253)
Q Consensus       228 --~~~~~~~~~~~~~~~~~-~~~i~vw~l  253 (253)
                        .+++|+|+++++++++. ++.+++|++
T Consensus       262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          262 GTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence              46999999998888887 999999963

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-33  Score=227.75  Aligned_cols=220  Identities=18%  Similarity=0.337  Sum_probs=192.8

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.+|++|+ + .|++||+.++    +....+.+|.     ..|.+++|   ++++|++|+.||.|++||+++++.+..+
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~-----~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~  209 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTL----ECKRILTGHT-----GSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTL  209 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSC----CEEEEECCCS-----SCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCC----eEEEEEcCCC-----CcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            566777777 5 9999999987    7888899998     89999998   4789999999999999999999999999


Q ss_pred             ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .+|...|.+++|+ ++.+++|+.||.|++||++++...........+...|.+++|   +++++++++.|+. |++||++
T Consensus       210 ~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~-i~vwd~~  284 (435)
T 1p22_A          210 IHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRT-IKVWNTS  284 (435)
T ss_dssp             CCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSE-EEEEETT
T ss_pred             cCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCe-EEEEECC
Confidence            9999999999996 669999999999999999988765544555677789999999   5689999999998 9999999


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      +.. .+..+..|...|.+++|+  + .++++|+.||.|++||++++....       ...+|...|.+++|  ++..+++
T Consensus       285 ~~~-~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~~~-------~~~~h~~~v~~~~~--~~~~l~s  351 (435)
T 1p22_A          285 TCE-FVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLR-------VLEGHEELVRCIRF--DNKRIVS  351 (435)
T ss_dssp             TCC-EEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEEE-------EECCCSSCEEEEEC--CSSEEEE
T ss_pred             cCc-EEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCEEE-------EEeCCcCcEEEEEe--cCCEEEE
Confidence            865 488889999999999995  4 599999999999999999876443       66789999999999  5667899


Q ss_pred             EEcCCcEEEEEC
Q 035558          242 IAFSTKLQILRV  253 (253)
Q Consensus       242 ~~~~~~i~vw~l  253 (253)
                      ++.|+.|++|++
T Consensus       352 g~~dg~i~vwd~  363 (435)
T 1p22_A          352 GAYDGKIKVWDL  363 (435)
T ss_dssp             EETTSCEEEEEH
T ss_pred             EeCCCcEEEEEC
Confidence            999999999984

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-34  Score=230.47  Aligned_cols=236  Identities=15%  Similarity=0.230  Sum_probs=187.5

Q ss_pred             CCCCCceEEeec-C-cEEEEEccCCccc---cceeeeecCCCCccccCCeeEEEecCCCC-CEEEEEeCCCeEEEEeccC
Q 035558            1 ECQKPDLLATSS-D-FLRVWRISDEDRR---VELKSLLNGNKNSEYCGPLTSFDWNEAEP-RRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         1 sp~~~~~l~~~~-~-~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~   74 (253)
                      +|.++.+|++++ | .|++|++..+...   .+....+.+|.     ..|.+++|+ +++ ++|++++.||.|++||+++
T Consensus        90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~  163 (402)
T 2aq5_A           90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT-----KRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGT  163 (402)
T ss_dssp             CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS-----SCEEEEEEC-SSBTTEEEEEETTSCEEEEETTT
T ss_pred             CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC-----CeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCC
Confidence            355788888888 4 9999999875111   14567788898     899999999 665 7999999999999999999


Q ss_pred             ceeeeee--ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC-CeeEEEeeCCCCCEEEEE--
Q 035558           75 EAVDTQL--IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-PLVRLGWNKQDPRYMATI--  148 (253)
Q Consensus        75 ~~~~~~~--~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~--  148 (253)
                      ++.+..+  ..|...|.+++|+ ++++|++++.||.|++||+++++....+.  ..+.+ .+.++.|+| ++.+++++  
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~g~~  240 (402)
T 2aq5_A          164 GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVS-EGKILTTGFS  240 (402)
T ss_dssp             TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECS-TTEEEEEEEC
T ss_pred             CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcC-CCcEEEEecc
Confidence            9999888  7899999999999 99999999999999999999886443331  23333 489999999 88889888  


Q ss_pred             -EeCCCeEEEEECCCCCCCeeeec-ccccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC
Q 035558          149 -IMDSAKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA  225 (253)
Q Consensus       149 -~~~~~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (253)
                       +.++. |++||+++...++.... .|...+.+++|+|++. +|+ +++.||.|++||+.+.+...    .......|..
T Consensus       241 ~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~g~~dg~i~i~d~~~~~~~~----~~l~~~~~~~  314 (402)
T 2aq5_A          241 RMSERQ-VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN-IVYLCGKGDSSIRYFEITSEAPFL----HYLSMFSSKE  314 (402)
T ss_dssp             TTCCEE-EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT-EEEEEETTCSCEEEEEECSSTTCE----EEEEEECCSS
T ss_pred             CCCCce-EEEEcCccccCCceEEeccCCCceeEEEEcCCCC-EEEEEEcCCCeEEEEEecCCCcce----EeecccccCC
Confidence             57777 99999998765444443 5677899999999994 664 67789999999999876311    0122334679


Q ss_pred             ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          226 EIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       226 ~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|.+++|+|++..++  +.++.+++|++
T Consensus       315 ~v~~~~~sp~~~~~~--s~~~~~~~~~l  340 (402)
T 2aq5_A          315 SQRGMGYMPKRGLEV--NKCEIARFYKL  340 (402)
T ss_dssp             CCSEEEECCGGGSCG--GGTEEEEEEEE
T ss_pred             cccceEEecccccce--ecceeEEEEEc
Confidence            999999999987544  35668999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-33  Score=224.07  Aligned_cols=211  Identities=11%  Similarity=0.205  Sum_probs=179.9

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCC-CEEEEEeCCCeEEEEeccCceeeeeee--cccccEEEEEec--CCCeEEEE
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEP-RRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG--GVGVFASV  102 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~--~~~~l~~~  102 (253)
                      +....+.+|.     ..|++++|+ +++ ++|++|+.||.|++||+.+++....+.  +|...|.+++|+  ++++|+++
T Consensus        64 ~~~~~~~~h~-----~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           64 KLHRTASPFD-----RRVTSLEWH-PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             EEEEEECCCS-----SCEEEEEEC-SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             ceEEeccCCC-----CCEEEEEEC-CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            5567788888     899999999 676 999999999999999999887666655  699999999999  56899999


Q ss_pred             eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEE
Q 035558          103 SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAW  182 (253)
Q Consensus       103 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  182 (253)
                      +.|+.|++||+++ .....+.....+...|.+++|+| ++.+|++++.++. |++||++  ..++..+..|...|.+++|
T Consensus       138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-i~i~d~~--~~~~~~~~~h~~~v~~~~~  212 (383)
T 3ei3_B          138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGR-LLLLGLD--GHEIFKEKLHKAKVTHAEF  212 (383)
T ss_dssp             ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSE-EEEEETT--SCEEEEEECSSSCEEEEEE
T ss_pred             eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCC-EEEEECC--CCEEEEeccCCCcEEEEEE
Confidence            9999999999996 33444444445557899999999 8999999999998 9999995  3358888999999999999


Q ss_pred             ecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCCceEEEEcCCcEEEEEC
Q 035558          183 APHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~vw~l  253 (253)
                      +|++..+|++++.|+.|++||+++.....    ......+|...|.+++|+| ++..+++++.|+.|++|++
T Consensus       213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~  280 (383)
T 3ei3_B          213 NPRCDWLMATSSVDATVKLWDLRNIKDKN----SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS  280 (383)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEGGGCCSTT----CEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred             CCCCCCEEEEEeCCCEEEEEeCCCCCccc----ceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence            99994489999999999999999854321    1234447999999999999 9998999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=216.73  Aligned_cols=220  Identities=15%  Similarity=0.153  Sum_probs=186.3

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc---eee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE---AVD   78 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~   78 (253)
                      ++.+|++++ + .|++||+...    +....+..|.     ..|.+++|+ +++++|++|+.||.|++|++...   +.+
T Consensus        28 ~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~~~~-----~~v~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~~~~   97 (313)
T 3odt_A           28 DDSKVASVSRDGTVRLWSKDDQ----WLGTVVYTGQ-----GFLNSVCYD-SEKELLLFGGKDTMINGVPLFATSGEDPL   97 (313)
T ss_dssp             ETTEEEEEETTSEEEEEEESSS----EEEEEEEECS-----SCEEEEEEE-TTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred             CCCEEEEEEcCCcEEEEECCCC----EEEEEeecCC-----ccEEEEEEC-CCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence            456677776 5 9999999886    7778888888     899999999 89999999999999999998754   456


Q ss_pred             eeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           79 TQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      ..+.+|...|.+++| +++++++++.||.|++||  ..+   .......+...+.+++|.|.+++++++++.++. |++|
T Consensus        98 ~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~  170 (313)
T 3odt_A           98 YTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGS---LVYNLQAHNASVWDAKVVSFSENKFLTASADKT-IKLW  170 (313)
T ss_dssp             CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTE---EEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-EEEE
T ss_pred             cchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCc---EEEecccCCCceeEEEEccCCCCEEEEEECCCC-EEEE
Confidence            778889999999999 588999999999999999  232   233334566799999999878999999999999 9999


Q ss_pred             ECCCCCCCeeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          159 DIRFPTLPVVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       159 d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      |..   .....+.. |...+.+++|+|++ . +++++.||.|++||+++++...       ....|..+|.+++|+|++ 
T Consensus       171 d~~---~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~-  237 (313)
T 3odt_A          171 QND---KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLR-------TYEGHESFVYCIKLLPNG-  237 (313)
T ss_dssp             ETT---EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEEE-------EEECCSSCEEEEEECTTS-
T ss_pred             ecC---ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhhh-------hhhcCCceEEEEEEecCC-
Confidence            943   23566666 88999999999998 4 9999999999999999876433       666899999999999999 


Q ss_pred             ceEEEEcCCcEEEEEC
Q 035558          238 DWVAIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~l  253 (253)
                      .+++++.|+.|++|++
T Consensus       238 ~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          238 DIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             CEEEEETTSEEEEECT
T ss_pred             CEEEEecCCEEEEEEC
Confidence            5999999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-33  Score=253.76  Aligned_cols=228  Identities=15%  Similarity=0.204  Sum_probs=197.5

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++++ + .|++||+.++    +....+.+|.     ..|.+++|+ +++++|++|+.||.|++||+.+++.+..
T Consensus       625 ~~~~~l~s~~~d~~i~vw~~~~~----~~~~~~~~h~-----~~v~~~~~s-~~~~~l~s~~~d~~v~vwd~~~~~~~~~  694 (1249)
T 3sfz_A          625 QDGQRIASCGADKTLQVFKAETG----EKLLDIKAHE-----DEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLVHT  694 (1249)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTC----CEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCC----CEEEEeccCC-----CCEEEEEEe-cCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            3677888877 4 9999999987    7888899998     899999999 8999999999999999999999999999


Q ss_pred             eecccccEEEEEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           81 LIAHDKEVYDIAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        81 ~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      +.+|...|.+++|+   +..++++++.||.|++||+++++...   ....|...|.+++|+| +++++++++.|+. |++
T Consensus       695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~-v~v  769 (1249)
T 3sfz_A          695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFSP-DDELLASCSADGT-LRL  769 (1249)
T ss_dssp             EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEECS-STTEEEEEESSSE-EEE
T ss_pred             EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEEEEec-CCCEEEEEECCCe-EEE
Confidence            99999999999998   34589999999999999999887433   3346777999999999 9999999999998 999


Q ss_pred             EECCCCCCC-----------------------------------------------------eee-ecccccceeEEEEe
Q 035558          158 LDIRFPTLP-----------------------------------------------------VVE-LQRHQASVNAIAWA  183 (253)
Q Consensus       158 ~d~~~~~~~-----------------------------------------------------~~~-~~~~~~~i~~~~~~  183 (253)
                      ||+++....                                                     ... ..+|...|.+++|+
T Consensus       770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s  849 (1249)
T 3sfz_A          770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS  849 (1249)
T ss_dssp             EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred             EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence            998754210                                                     001 12677889999999


Q ss_pred             cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |++ .++++++.||.|++||+.++...       ....+|...|.+++|+|+++.+++++.|+.+++|++
T Consensus       850 p~~-~~l~~~~~dg~v~vwd~~~~~~~-------~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          850 PYD-HLAVIALSQYCVELWNIDSRLKV-------ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             SST-TEEEEECSSSCEEEEETTTTEEE-------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             CCC-CEEEEEeCCCeEEEEEcCCCcee-------eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            999 69999999999999999986543       367789999999999999999999999999999973

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-33  Score=212.76  Aligned_cols=221  Identities=17%  Similarity=0.225  Sum_probs=185.5

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.+|++++ + .|++|++... ...+....+.+|.     ..|.+++|+   ++++++++.||.|++||  .++....+
T Consensus        70 ~~~~l~~~~~dg~i~~~~~~~~-~~~~~~~~~~~~~-----~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~  138 (313)
T 3odt_A           70 EKELLLFGGKDTMINGVPLFAT-SGEDPLYTLIGHQ-----GNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNL  138 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETTCC-TTSCC-CEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred             CCCEEEEecCCCeEEEEEeeec-CCCCcccchhhcc-----cCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEec
Confidence            566777776 5 9999999774 3345677788888     899999995   67999999999999999  57778888


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ..|...+.+++|.  +++.+++++.||.|++||....    .......+...+.+++|+| ++. +++++.++. |++||
T Consensus       139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~-i~i~d  211 (313)
T 3odt_A          139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV----IKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGL-IKLVD  211 (313)
T ss_dssp             ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE----EEEECSSCSSCEEEEEEEE-TTE-EEEEETTSE-EEEEE
T ss_pred             ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce----EEEEeccCcccEEEEEEcC-CCe-EEEccCCCe-EEEEE
Confidence            8999999999998  7899999999999999993321    1112223666999999999 666 888898888 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      +++.+ ++..+..|...|++++|+|++  .|++++.||.|++||+++++...       ....|..+|.+++|+|+++ +
T Consensus       212 ~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~-------~~~~~~~~i~~~~~~~~~~-~  280 (313)
T 3odt_A          212 MHTGD-VLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQ-------VITLPAISIWSVDCMSNGD-I  280 (313)
T ss_dssp             TTTCC-EEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEE-------EEECSSSCEEEEEECTTSC-E
T ss_pred             CCchh-hhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeE-------EEeccCceEEEEEEccCCC-E
Confidence            99865 488888999999999999998  58899999999999999876443       6677888999999999997 8


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.|+.|++|++
T Consensus       281 ~~~~~dg~i~iw~~  294 (313)
T 3odt_A          281 IVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EEEETTSCEEEEES
T ss_pred             EEEeCCCcEEEEeC
Confidence            89999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.3e-33  Score=217.99  Aligned_cols=227  Identities=13%  Similarity=0.103  Sum_probs=183.3

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEeCCCeEEEEec-cCceeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSSIDTTCTIWDI-EREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~-~~~~~~~   79 (253)
                      ++.+|++++ + .|++|++..+ ........+.+|.     ..|++++|+ ++++ +|++|+.||.|++||+ ++++. .
T Consensus        22 ~~~~l~~~~~d~~v~iw~~~~~-~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~-~   93 (342)
T 1yfq_A           22 SKSLLLITSWDGSLTVYKFDIQ-AKNVDLLQSLRYK-----HPLLCCNFI-DNTDLQIYVGTVQGEILKVDLIGSPSF-Q   93 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETT-TTEEEEEEEEECS-----SCEEEEEEE-ESSSEEEEEEETTSCEEEECSSSSSSE-E
T ss_pred             CCCEEEEEcCCCeEEEEEeCCC-CccccceeeeecC-----CceEEEEEC-CCCCcEEEEEcCCCeEEEEEeccCCce-E
Confidence            556677766 5 9999999886 2112344555787     899999999 7899 9999999999999999 77654 6


Q ss_pred             eeec--ccccEEEEEecCCCeEEEEeCCCcEEEEEcCC---------CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           80 QLIA--HDKEVYDIAWGGVGVFASVSADGSVRVFDLRD---------KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        80 ~~~~--~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      .+.+  |...|.+++|+.++.+++++.|+.|++||+++         .+....+    .+...+.+++|+| ++  ++++
T Consensus        94 ~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~--l~~~  166 (342)
T 1yfq_A           94 ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----KVKNKIFTMDTNS-SR--LIVG  166 (342)
T ss_dssp             ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----SSCCCEEEEEECS-SE--EEEE
T ss_pred             eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEE----eeCCceEEEEecC-Cc--EEEE
Confidence            6778  99999999998778999999999999999987         4432222    2566899999998 54  8888


Q ss_pred             EeCCCeEEEEECCC-CCCC-eeeecccccceeEEEEec-CCCCeEEEecCCCcEEEEeccCC-----CCCCCCCCCCeee
Q 035558          149 IMDSAKVVVLDIRF-PTLP-VVELQRHQASVNAIAWAP-HSSCHICTAGDDSQALIWDLSSM-----GQPVEGGLDPILA  220 (253)
Q Consensus       149 ~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~  220 (253)
                      +.++. |++||+++ .... ......|...+.+++|+| ++ .++++++.||.|++|++...     ....      ..+
T Consensus       167 ~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~------~~~  238 (342)
T 1yfq_A          167 MNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKR------FAF  238 (342)
T ss_dssp             ESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTC------EEE
T ss_pred             eCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccc------eee
Confidence            88888 99999998 5432 334556888999999999 98 69999999999999999876     1222      344


Q ss_pred             ccCC---------CceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          221 YTAG---------AEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       221 ~~~~---------~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..|.         ..|.+++|+|+++++++++.|+.|++|++
T Consensus       239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            4554         49999999999999999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.9e-33  Score=233.34  Aligned_cols=228  Identities=14%  Similarity=0.184  Sum_probs=194.2

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCC-eeEEEecCC--CCCEEEEEeCCCeEEEEeccCc---
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGP-LTSFDWNEA--EPRRIGTSSIDTTCTIWDIERE---   75 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~---   75 (253)
                      +++++|+++++ .|++|++.++....+....+.+|.     .. |++++|+ |  ++++|++|+.||.|++||+.++   
T Consensus        28 pdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~s-p~~~~~~l~s~~~dg~v~vw~~~~~~~~  101 (615)
T 1pgu_A           28 PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG-----SSVVTTVKFS-PIKGSQYLCSGDESGKVIVWGWTFDKES  101 (615)
T ss_dssp             TTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT-----TSCEEEEEEC-SSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred             CCCCEEEEecCCeEEEEECCCCCCccccceEEecCC-----CceEEEEEEC-cCCCCCEEEEecCCCEEEEEeCCCCccc
Confidence            46778888888 999999987423335778889998     88 9999999 7  9999999999999999999754   


Q ss_pred             -----eeeeeeecccccEEEEEec-CCCeEEEEeCC----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC-E
Q 035558           76 -----AVDTQLIAHDKEVYDIAWG-GVGVFASVSAD----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR-Y  144 (253)
Q Consensus        76 -----~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~  144 (253)
                           +....+..|..+|.+++|+ ++++|++++.+    +.|++||  .++   .......+...|.+++|+| ++. .
T Consensus       102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~---~~~~~~~~~~~v~~~~~~~-~~~~~  175 (615)
T 1pgu_A          102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN---SLGEVSGHSQRINACHLKQ-SRPMR  175 (615)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC---EEEECCSCSSCEEEEEECS-SSSCE
T ss_pred             ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC---cceeeecCCccEEEEEECC-CCCcE
Confidence                 6777788899999999999 99999999988    7899998  333   3344456777999999999 665 8


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCeeeeccccc---ceeEEEEecC-CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558          145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQA---SVNAIAWAPH-SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                      +++++.++. |++||+++.+ .+..+..|..   .|.+++|+|+ + .+|++++.||.|++||+++++...       ..
T Consensus       176 l~~~~~d~~-v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~-------~~  245 (615)
T 1pgu_A          176 SMTVGDDGS-VVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLK-------YI  245 (615)
T ss_dssp             EEEEETTTE-EEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEE-------EC
T ss_pred             EEEEeCCCc-EEEEeCCCcc-eeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeE-------Ee
Confidence            999999988 9999998765 4778888998   9999999999 8 699999999999999998876433       33


Q ss_pred             -c---cCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          221 -Y---TAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       221 -~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                       .   .|..+|.+++|+ +++.+++++.|+.+++|++
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~  281 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV  281 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC
Confidence             3   899999999999 9888999999999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-33  Score=217.94  Aligned_cols=207  Identities=17%  Similarity=0.253  Sum_probs=180.4

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG  106 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg  106 (253)
                      .....+.+|.     .+|++++|+ +++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++|++++.||
T Consensus        23 ~~~~~l~~h~-----~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg   96 (369)
T 3zwl_B           23 MKAIKLTGHE-----RPLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADY   96 (369)
T ss_dssp             EEEEEEECCS-----SCEEEEEEC-TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccEEEEEee-----ceEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence            4456688898     899999999 799999999999999999999999999999999999999999 999999999999


Q ss_pred             cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-----CCeEEEEECCCCCC----------Ceeeec
Q 035558          107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-----SAKVVVLDIRFPTL----------PVVELQ  171 (253)
Q Consensus       107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-----~~~i~~~d~~~~~~----------~~~~~~  171 (253)
                      .|++||+++++....+.    +...+.+++|+| ++.++++++.+     +. |++||++....          +...+.
T Consensus        97 ~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~-i~~~d~~~~~~~~~~~~~~~~~~~~~~  170 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWK----SPVPVKRVEFSP-CGNYFLAILDNVMKNPGS-INIYEIERDSATHELTKVSEEPIHKII  170 (369)
T ss_dssp             EEEEEETTTCCEEEEEE----CSSCEEEEEECT-TSSEEEEEECCBTTBCCE-EEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred             eEEEEECCCCcEEEEee----cCCCeEEEEEcc-CCCEEEEecCCccCCCCE-EEEEEecCCccceeecccccceeeecc
Confidence            99999999887554443    455899999999 89999999888     77 99999987542          344555


Q ss_pred             cccc--ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558          172 RHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ  249 (253)
Q Consensus       172 ~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~  249 (253)
                      .|..  .+.+++|+|++ .+|++++.||.|++||+++.....      .....|...|.+++|+|+++.+++++.|+.|+
T Consensus       171 ~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  243 (369)
T 3zwl_B          171 THEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFSPDLTYFITSSRDTNSF  243 (369)
T ss_dssp             CCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE------EEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE------EEEecCCCceeEEEECCCCCEEEEecCCceEE
Confidence            5666  89999999999 699999999999999999844332      46667999999999999999999999999999


Q ss_pred             EEEC
Q 035558          250 ILRV  253 (253)
Q Consensus       250 vw~l  253 (253)
                      +|++
T Consensus       244 v~d~  247 (369)
T 3zwl_B          244 LVDV  247 (369)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-34  Score=230.67  Aligned_cols=239  Identities=12%  Similarity=0.135  Sum_probs=179.9

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCc--cccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc---C
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDED--RRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE---R   74 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~   74 (253)
                      |.++.+|++++ | .|++||+....  ...+....+ +|.     .+|++++|+ +++++|++|+.||.|++||++   .
T Consensus        73 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~-----~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~  145 (437)
T 3gre_A           73 PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS-----STVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQ  145 (437)
T ss_dssp             CSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEE
T ss_pred             CCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCC-----CCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccC
Confidence            44778888887 4 99999997620  111222233 466     899999999 799999999999999999995   4


Q ss_pred             ceeeeeeec------------ccccEEEEE--ec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeC
Q 035558           75 EAVDTQLIA------------HDKEVYDIA--WG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNK  139 (253)
Q Consensus        75 ~~~~~~~~~------------~~~~v~~~~--~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~  139 (253)
                      ++....+..            +...+.++.  ++ ++.+|++++.||.|++||+++.+....+.. ..|...|++++|+|
T Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~  224 (437)
T 3gre_A          146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDE  224 (437)
T ss_dssp             TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECT
T ss_pred             CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECC
Confidence            444333322            445566666  34 688999999999999999999875444432 12556999999999


Q ss_pred             CCCCEEEEEEeCCCeEEEEECCCCCCCeeeec-ccccceeEEEEec----CCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558          140 QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAP----HSSCHICTAGDDSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       140 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  214 (253)
                       ++.+|++++.|+. |++||+++.. ++..+. .|...|.+++|+|    ++ .+|++++.||.|++||+++++......
T Consensus       225 -~~~~l~s~~~dg~-i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          225 -ECCVLILGTTRGI-IDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             -TSCEEEEEETTSC-EEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred             -CCCEEEEEcCCCe-EEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence             8999999999999 9999999854 466665 6788999996665    55 599999999999999998765221000


Q ss_pred             ----------CCC-------eeecc--CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          215 ----------LDP-------ILAYT--AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       215 ----------~~~-------~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                                ..+       ..+.+  |...|++++|+ +++.+++++.|+.|++|++
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL  357 (437)
T ss_dssp             SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred             cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence                      000       01222  78889999999 6677889999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.5e-33  Score=222.49  Aligned_cols=225  Identities=16%  Similarity=0.249  Sum_probs=185.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-----------
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-----------   82 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----------   82 (253)
                      .+++|+++..    +....+.+|.     ++|++++|+|.++++|++|+.||.|++||+.+++....+.           
T Consensus        24 ~~~v~~~~~~----~~~~~~~~h~-----~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   94 (408)
T 4a11_B           24 TRRVLGLELN----KDRDVERIHG-----GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH   94 (408)
T ss_dssp             HHHHHTEEEC----TTEEECCCCS-----SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred             cceeeccccC----cceeeeeccC-----CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccc
Confidence            6788888776    6778888898     8999999993299999999999999999999877555443           


Q ss_pred             --cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC--CCCEEEEEEeCCCeEE
Q 035558           83 --AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ--DPRYMATIIMDSAKVV  156 (253)
Q Consensus        83 --~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~i~  156 (253)
                        +|...|.+++|+  ++.+|++++.||.|++||+++++......    +...+.++.|+|.  ++.++++++.++. |+
T Consensus        95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~  169 (408)
T 4a11_B           95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPK-VQ  169 (408)
T ss_dssp             TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSS-EE
T ss_pred             cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCe-EE
Confidence              589999999999  66799999999999999999887444432    3447899999884  3348999999998 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC---------CCCCeeeccCCCce
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG---------GLDPILAYTAGAEI  227 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~v  227 (253)
                      +||+++.. .+..+..|...|.+++|+|++..+|++++.||.|++||++........         .........|...|
T Consensus       170 ~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          170 LCDLKSGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             EEESSSSC-CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             EEeCCCcc-eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            99999865 478888999999999999999546899999999999999876532200         00111235789999


Q ss_pred             eEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          228 EQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .+++|+|+++++++++.|+.+++|++
T Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          249 NGLCFTSDGLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            99999999999999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-32  Score=229.27  Aligned_cols=231  Identities=13%  Similarity=0.186  Sum_probs=194.5

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccC---CeeEEEecCCC-CCEEEEEeCCCeEEEEeccCc
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCG---PLTSFDWNEAE-PRRIGTSSIDTTCTIWDIERE   75 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~   75 (253)
                      |.+..++++++ + .|++||+...    +....+.+|.     .   .|.+++|+ ++ +++|++++.||.|++||++++
T Consensus       170 ~~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~  239 (615)
T 1pgu_A          170 QSRPMRSMTVGDDGSVVFYQGPPF----KFSASDRTHH-----KQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGKSG  239 (615)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTB----EEEEEECSSS-----CTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETTTC
T ss_pred             CCCCcEEEEEeCCCcEEEEeCCCc----ceeeeecccC-----CCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCC
Confidence            44444677776 5 9999999887    7888899898     7   89999999 77 999999999999999999999


Q ss_pred             eeeeee-e---cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee-----------------------------
Q 035558           76 AVDTQL-I---AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII-----------------------------  122 (253)
Q Consensus        76 ~~~~~~-~---~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------------------------  122 (253)
                      +.+..+ .   .|...|.+++|+++++|++++.|+.|++||+++++....+                             
T Consensus       240 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  319 (615)
T 1pgu_A          240 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  319 (615)
T ss_dssp             CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             CEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC
Confidence            988888 5   8999999999987778999999999999998753211000                             


Q ss_pred             --------------------------------------------------------------------------------
Q 035558          123 --------------------------------------------------------------------------------  122 (253)
Q Consensus       123 --------------------------------------------------------------------------------  122 (253)
                                                                                                      
T Consensus       320 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~  399 (615)
T 1pgu_A          320 TLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG  399 (615)
T ss_dssp             CEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred             CEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 035558          123 --------------------------------------------------------------------------------  122 (253)
Q Consensus       123 --------------------------------------------------------------------------------  122 (253)
                                                                                                      
T Consensus       400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~  479 (615)
T 1pgu_A          400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  479 (615)
T ss_dssp             EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccc
Confidence                                                                                            


Q ss_pred             --eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-cccceeEEEEec----------CCCCe
Q 035558          123 --YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-HQASVNAIAWAP----------HSSCH  189 (253)
Q Consensus       123 --~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~----------~~~~~  189 (253)
                        .....+...|.+++|+| ++++|++++.|+. |++||+.+.+. +..+.+ |...|++++|+|          ++ .+
T Consensus       480 ~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~-i~iw~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~-~~  555 (615)
T 1pgu_A          480 SFDLKTPLRAKPSYISISP-SETYIAAGDVMGK-ILLYDLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEEIEE-DL  555 (615)
T ss_dssp             EEECSSCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTTTEE-EECCSCCCSSCEEEEEECCCC------CCSC-CE
T ss_pred             cccccCCccCceEEEEECC-CCCEEEEcCCCCe-EEEeeCCCCcc-eeEeecCCCCceeEEEEcCccccccccccCC-CE
Confidence              11123455788899999 8999999999998 99999988653 667777 999999999999          88 69


Q ss_pred             EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |++++.||.|++||+.+.....      ..+.+|...|++++|+|+++ +++++.|+.|++|++
T Consensus       556 l~~~~~dg~i~iw~~~~~~~~~------~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          556 VATGSLDTNIFIYSVKRPMKII------KALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             EEEEETTSCEEEEESSCTTCCE------EETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCceec------hhhhcCccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence            9999999999999999874333      45678999999999999999 999999999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.7e-33  Score=225.39  Aligned_cols=209  Identities=18%  Similarity=0.327  Sum_probs=176.8

Q ss_pred             ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----------ceeeeeeecccccEEEEEec-CCC-eEE
Q 035558           33 LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----------EAVDTQLIAHDKEVYDIAWG-GVG-VFA  100 (253)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~-~~~-~l~  100 (253)
                      ...|.     +.|++++|+|.++.+|++++.||.|++||+..          .+....+.+|...|.+++|+ ++. +|+
T Consensus       124 ~~~h~-----~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          124 KINHE-----GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEES-----SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEcCC-----CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            44566     89999999943478999999999999999987          56777888999999999999 666 999


Q ss_pred             EEeCCCcEEEEEcCCCCCe----eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC--CCeeeecccc
Q 035558          101 SVSADGSVRVFDLRDKEHS----TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT--LPVVELQRHQ  174 (253)
Q Consensus       101 ~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~  174 (253)
                      +|+.||.|++||++.....    ........|...|.+++|+|.++.+|++++.++. |++||+++..  .++..+..|.
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~-i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCSCSSSCSEEEECCS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe-EEEEECCCCCCCcceeEeecCC
Confidence            9999999999999985321    1123334677799999999977889999999998 9999999863  4577788899


Q ss_pred             cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc-eEEEEcCCcEEEEEC
Q 035558          175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD-WVAIAFSTKLQILRV  253 (253)
Q Consensus       175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw~l  253 (253)
                      ..|++++|+|++..+|++|+.||.|++||++....+.      ..+..|...|.+++|+|+++. +++++.|+.|++|++
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~------~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL------HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS------EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe------EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            9999999999986579999999999999999866544      466789999999999999975 668889999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=5.2e-33  Score=211.76  Aligned_cols=232  Identities=8%  Similarity=0.051  Sum_probs=167.8

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCcccc--------------------CCeeEEEecCCC----CCEEEEE
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYC--------------------GPLTSFDWNEAE----PRRIGTS   61 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~v~~~~~~~~~----~~~l~~~   61 (253)
                      .++++++ .|++|+.... .+.+.+.++..|+.....                    ..|.+++|+ |+    +..++++
T Consensus        56 ~~~~~~~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s-pd~~~~~~~l~s~  133 (356)
T 2w18_A           56 CIITACEDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS-SDDESEKQVLLKS  133 (356)
T ss_dssp             EEEEEESSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-------CCEEEEEE
T ss_pred             EEEEeccceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC-CCccccccEEEeC
Confidence            4667777 9999999886 666788888888732111                    145666777 66    6677765


Q ss_pred             eC--------------------CCeEEEEec-cCceeeeeeecccccEEEEEec----CCCeEEEEeCCCcEEEEEcCCC
Q 035558           62 SI--------------------DTTCTIWDI-EREAVDTQLIAHDKEVYDIAWG----GVGVFASVSADGSVRVFDLRDK  116 (253)
Q Consensus        62 ~~--------------------dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~~~~  116 (253)
                      +.                    |+.|++|++ .+++.+..+.+|...+..++|+    ++..|++++.|++|++||++++
T Consensus       134 g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG  213 (356)
T 2w18_A          134 GNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG  213 (356)
T ss_dssp             EEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred             CCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence            53                    888888888 4477777777888777777777    4589999999999999999999


Q ss_pred             CCeeeeeccCCCCCCeeEEEeeCCCCCEE------------EEEEeCCCeEEEEECCCCCCCeeee-----cccccceeE
Q 035558          117 EHSTIIYESSEPDTPLVRLGWNKQDPRYM------------ATIIMDSAKVVVLDIRFPTLPVVEL-----QRHQASVNA  179 (253)
Q Consensus       117 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l------------~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~i~~  179 (253)
                      +....+.....+...+.+++|+| ++.++            ++|+.|+. |++||..++.. +..+     .+|...+.+
T Consensus       214 k~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~-l~v~~~~~p~Gh~~~~ls  290 (356)
T 2w18_A          214 QLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLS-VGVMLYCLPPGQAGRFLE  290 (356)
T ss_dssp             CEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEE-EEEEETTTTEE-EEEEEECCCTTCCCCEEE
T ss_pred             cEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEE-EEEEEeeccCCCcceeEc
Confidence            87666653333334788889999 88776            45666676 99999987653 3333     356555544


Q ss_pred             EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee-EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE-QLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..++  + .++++++.|++|+|||+.+++...       .+.+|...+. .++|+|+++++++++.|+.|+||++
T Consensus       291 g~~s--g-~~lASgS~DgTIkIWDl~tGk~l~-------tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          291 GDVK--D-HCAAAILTSGTIAIWDLLLGQCTA-------LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEE--T-TEEEEEETTSCEEEEETTTCSEEE-------EECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cccC--C-CEEEEEcCCCcEEEEECCCCcEEE-------EecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            4444  5 589999999999999999987543       5667877655 5899999999999999999999984

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.5e-33  Score=223.92  Aligned_cols=224  Identities=19%  Similarity=0.283  Sum_probs=187.4

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee---
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD---   78 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---   78 (253)
                      ++.+|++|+ + .|++||+.++    +....+.+|.     ..|.+++|+   ++.+++|+.||.|++||+++++..   
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~  249 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTG----EMLNTLIHHC-----EAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLR  249 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSC----CEEEEECCCC-----SCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCC----cEEEEEcCCC-----CcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceee
Confidence            567788877 5 9999999987    7888899998     899999997   459999999999999999887655   


Q ss_pred             eeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           79 TQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      ..+.+|...|.+++| +++++++++.||.|++||+++++....+   ..+...+.+++|+   ++++++++.|+. |++|
T Consensus       250 ~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~---~~~l~~g~~dg~-i~iw  321 (435)
T 1p22_A          250 RVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTL---NGHKRGIACLQYR---DRLVVSGSSDNT-IRLW  321 (435)
T ss_dssp             EEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEEE---TTEEEEEETTSC-EEEE
T ss_pred             eEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEE---cCCCCcEEEEEeC---CCEEEEEeCCCe-EEEE
Confidence            567789999999999 6889999999999999999998744433   4566789999994   579999999999 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC--CCCeeeccCCCceeEEEEcCCC
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG--LDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      |++++. ++..+.+|...|.+++|  ++ .+|++|+.||.|++||++....+....  .......+|..+|.+++|  ++
T Consensus       322 d~~~~~-~~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~  395 (435)
T 1p22_A          322 DIECGA-CLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE  395 (435)
T ss_dssp             ETTTCC-EEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS
T ss_pred             ECCCCC-EEEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC
Confidence            999865 48889999999999999  45 599999999999999998765322110  012456789999999999  56


Q ss_pred             CceEEEEcCCcEEEEEC
Q 035558          237 PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~~~~~i~vw~l  253 (253)
                      ..+++++.|+.|++|++
T Consensus       396 ~~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          396 FQIVSSSHDDTILIWDF  412 (435)
T ss_dssp             SCEEECCSSSEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEEC
Confidence            67899999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=221.61  Aligned_cols=208  Identities=16%  Similarity=0.235  Sum_probs=157.7

Q ss_pred             ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeee-------eeecccccEEEEEec-CC-CeEEEE
Q 035558           33 LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDT-------QLIAHDKEVYDIAWG-GV-GVFASV  102 (253)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~-~~-~~l~~~  102 (253)
                      ..+|.     ..|.+++|+ +++++|++| .|+.|++||++. ++...       .+.+|...|.+++|+ ++ ++|+++
T Consensus       173 ~~~h~-----~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          173 ANAHT-----YHINSISIN-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             CSCCS-----SCCCEEEEC-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             ccCCC-----cceEEEEEc-CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence            35677     899999999 789999998 799999999984 44443       356899999999999 77 899999


Q ss_pred             eCCCcEEEEEcCCCCCee-eeeccCCCCC------------CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee
Q 035558          103 SADGSVRVFDLRDKEHST-IIYESSEPDT------------PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE  169 (253)
Q Consensus       103 ~~dg~i~i~d~~~~~~~~-~~~~~~~~~~------------~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~  169 (253)
                      +.||.|++||+++++... .......+..            .|.+++|+| ++.+|++++. +. |++||+++...++..
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~-v~iwd~~~~~~~~~~  322 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LS-VKVWDLNMENRPVET  322 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SE-EEEEETTCCSSCSCC
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-Ce-EEEEeCCCCccccce
Confidence            999999999999887411 1122223332            899999999 9999999888 76 999999975556788


Q ss_pred             ecccccc---------------eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC-C---------C--------
Q 035558          170 LQRHQAS---------------VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG-L---------D--------  216 (253)
Q Consensus       170 ~~~~~~~---------------i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~---------~--------  216 (253)
                      +..|...               +..++|+|++ .+|++|+.||.|++||+.+++...... .         .        
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG  401 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS
T ss_pred             eeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccC
Confidence            8877642               2349999999 699999999999999998865321000 0         0        


Q ss_pred             -------CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          217 -------PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       217 -------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                             ......+...|..++|+|++. +++++..+.+.+|.
T Consensus       402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~~~~~~  443 (447)
T 3dw8_B          402 KRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNNLYIFQ  443 (447)
T ss_dssp             CCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSCEEEEE
T ss_pred             CcccccccccccccCCceeEEEECCCCC-EEEEEecceeeeec
Confidence                   000124467899999999997 55555566688875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.5e-32  Score=220.79  Aligned_cols=219  Identities=20%  Similarity=0.273  Sum_probs=184.9

Q ss_pred             eEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-CCCCEEEEEeCCCeEEEEeccCcee------
Q 035558            7 LLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-AEPRRIGTSSIDTTCTIWDIEREAV------   77 (253)
Q Consensus         7 ~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~------   77 (253)
                      +|++++ | .|++||+.++    +....+.+|.     ..|.+++|+| +++.++++|+.||.|++||+.+++.      
T Consensus       175 ~l~s~s~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  245 (464)
T 3v7d_B          175 ILVSGSTDRTVRVWDIKKG----CCTHVFEGHN-----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE  245 (464)
T ss_dssp             EEEEEETTSCEEEEETTTT----EEEEEECCCS-----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-----
T ss_pred             EEEEEeCCCCEEEEECCCC----cEEEEECCCC-----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccc
Confidence            666666 5 9999999987    7888899998     8999999985 4678999999999999999987652      


Q ss_pred             -----------------eeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558           78 -----------------DTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        78 -----------------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                                       ...+.+|...|.++.. +++++++++.||.|++||+++.+..   .....+...|.+++|+| 
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~-  320 (464)
T 3v7d_B          246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCL---YILSGHTDRIYSTIYDH-  320 (464)
T ss_dssp             -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEEET-
T ss_pred             cCCcceEeeccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE---EEecCCCCCEEEEEEcC-
Confidence                             4456688888888744 6889999999999999999987643   33456777999999999 


Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                      +++++++++.|+. |++||+++++ ++..+.+|...|.+++|++   .+|++++.||.|++||+++....        ..
T Consensus       321 ~~~~l~sg~~dg~-i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~--------~~  387 (464)
T 3v7d_B          321 ERKRCISASMDTT-IRIWDLENGE-LMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRK--------FS  387 (464)
T ss_dssp             TTTEEEEEETTSC-EEEEETTTTE-EEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEE--------EE
T ss_pred             CCCEEEEEeCCCc-EEEEECCCCc-EEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCcee--------ee
Confidence            9999999999999 9999999865 4888999999999999983   58999999999999999986532        33


Q ss_pred             ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..+...+..++|+|+++.+++++ |+.+++|++
T Consensus       388 ~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~  419 (464)
T 3v7d_B          388 YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL  419 (464)
T ss_dssp             EECTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred             ecCCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence            45777888999999998665655 999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-31  Score=216.81  Aligned_cols=217  Identities=19%  Similarity=0.220  Sum_probs=188.9

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++++|++++ + .|++||+.++    +....+.+|.     ..|.+++|+   ++++++|+.||.|++||+++++.+..+
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~  195 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVTG----KCLRTLVGHT-----GGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTL  195 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTC----CEEEECCCCS-----SCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cCCEEEEEECCCcEEEEECCCC----cEEEEEcCCC-----CCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEE
Confidence            466788877 4 9999999987    8888999999     899999997   579999999999999999999999999


Q ss_pred             ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .+|...|.++.|+ ++.+++++.||.|++||+++++....+   ..+...+.+++|   ++.++++++.|+. |++||++
T Consensus       196 ~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~---~~~~l~~~~~dg~-i~iwd~~  267 (445)
T 2ovr_B          196 YGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVL---MGHVAAVRCVQY---DGRRVVSGAYDFM-VKVWDPE  267 (445)
T ss_dssp             CCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEE---ECCSSCEEEEEE---CSSCEEEEETTSC-EEEEEGG
T ss_pred             CCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEE---cCCcccEEEEEE---CCCEEEEEcCCCE-EEEEECC
Confidence            9999999999995 778999999999999999988744333   456678999998   5788999999998 9999998


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      +.. ++..+.+|...|.+++|  ++ .++++++.||.|++||+++++...       ...+|...+.++.+++  ..+++
T Consensus       268 ~~~-~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~v~~~~~~~--~~l~~  334 (445)
T 2ovr_B          268 TET-CLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIH-------TLTGHQSLTSGMELKD--NILVS  334 (445)
T ss_dssp             GTE-EEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEE-------EECCCCSCEEEEEEET--TEEEE
T ss_pred             CCc-EeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEE-------EEcCCcccEEEEEEeC--CEEEE
Confidence            865 47888899999999999  55 699999999999999999876443       6678889999988854  47889


Q ss_pred             EEcCCcEEEEEC
Q 035558          242 IAFSTKLQILRV  253 (253)
Q Consensus       242 ~~~~~~i~vw~l  253 (253)
                      ++.|+.|++|++
T Consensus       335 ~~~dg~i~vwd~  346 (445)
T 2ovr_B          335 GNADSTVKIWDI  346 (445)
T ss_dssp             EETTSCEEEEET
T ss_pred             EeCCCeEEEEEC
Confidence            999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-33  Score=223.21  Aligned_cols=241  Identities=12%  Similarity=0.044  Sum_probs=176.8

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCc-------cccCCeeEEE--ecCCCCCEEEEEeCCCeEEEEec
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNS-------EYCGPLTSFD--WNEAEPRRIGTSSIDTTCTIWDI   72 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~vwd~   72 (253)
                      ++.+|++++ | .|++||+... ...+....+.+|.-.       .....+.++.  ++ +++.+|++|+.||.|++||+
T Consensus       122 ~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~  199 (437)
T 3gre_A          122 NFDAFAVSSKDGQIIVLKVNHY-QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDI  199 (437)
T ss_dssp             TSSEEEEEETTSEEEEEEEEEE-EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEeCCCEEEEEEeccc-cCCceeeccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeC
Confidence            566777776 5 9999999521 001333322222100       0115666776  45 67899999999999999999


Q ss_pred             cCceeeeeeec--ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC---CCCEEE
Q 035558           73 EREAVDTQLIA--HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ---DPRYMA  146 (253)
Q Consensus        73 ~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~  146 (253)
                      ++++.+..+..  |...|++++|+ ++++|++|+.||.|++||+++++....+.  ..+...|.+++|+|.   ++.+++
T Consensus       200 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          200 RTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             TTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             CCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCceEEEEeccccCCCccEEE
Confidence            99999999987  89999999999 99999999999999999999876433322  144458999966652   677999


Q ss_pred             EEEeCCCeEEEEECCCCCCCeeeec------------------------c--cccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          147 TIIMDSAKVVVLDIRFPTLPVVELQ------------------------R--HQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~~~~~~~~~------------------------~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      +++.|+. |++||+++... +..+.                        +  |...|++++|+ ++ .+|++|+.||.|+
T Consensus       278 s~~~dg~-i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~  353 (437)
T 3gre_A          278 GGSSKTF-LTIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIV  353 (437)
T ss_dssp             EESTTEE-EEEEETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEE
T ss_pred             EEcCCCc-EEEEEcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEE
Confidence            9999998 99999987552 33332                        2  66779999999 66 6999999999999


Q ss_pred             EEeccCCCCCCCCCC------------------------------CCeeeccCCCceeEEEEcCC--CCceEEEEcCCcE
Q 035558          201 IWDLSSMGQPVEGGL------------------------------DPILAYTAGAEIEQLQWSSS--QPDWVAIAFSTKL  248 (253)
Q Consensus       201 iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i  248 (253)
                      +||+.+++.......                              .......|...|++++|+++  +..+++++.||.|
T Consensus       354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I  433 (437)
T 3gre_A          354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI  433 (437)
T ss_dssp             EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred             EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence            999988764320000                              00011238999999999998  6678899999999


Q ss_pred             EEEE
Q 035558          249 QILR  252 (253)
Q Consensus       249 ~vw~  252 (253)
                      +||+
T Consensus       434 ~iw~  437 (437)
T 3gre_A          434 GIFQ  437 (437)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9995

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.6e-32  Score=210.06  Aligned_cols=209  Identities=14%  Similarity=0.227  Sum_probs=173.8

Q ss_pred             eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----eeeeeeecccccEEEEEec-C--CCeEEEE
Q 035558           30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----AVDTQLIAHDKEVYDIAWG-G--VGVFASV  102 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~-~--~~~l~~~  102 (253)
                      ...+.+|.     ..|++++|+ +++++|++|+.||.|++||+.++    +....+.+|...|.+++|+ .  +++|+++
T Consensus         4 ~~~~~gH~-----~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~   77 (351)
T 3f3f_A            4 QPFDSGHD-----DLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA   77 (351)
T ss_dssp             CCEECCCS-----SCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred             cccCcccc-----cceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence            45677898     899999999 79999999999999999999876    4666778999999999999 3  8899999


Q ss_pred             eCCCcEEEEEcCCCCCe------eeeeccCCCCCCeeEEEeeCCC--CCEEEEEEeCCCeEEEEECCCCCCCeeee----
Q 035558          103 SADGSVRVFDLRDKEHS------TIIYESSEPDTPLVRLGWNKQD--PRYMATIIMDSAKVVVLDIRFPTLPVVEL----  170 (253)
Q Consensus       103 ~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----  170 (253)
                      +.||.|++||+++++..      ..+.....+...|.+++|+| +  +.++++++.|+. |++||+++... +..+    
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~-v~iwd~~~~~~-~~~~~~~~  154 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGI-LRLYDALEPSD-LRSWTLTS  154 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCE-EEEEECSSTTC-TTCCEEEE
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCc-EEEecCCChHH-hccccccc
Confidence            99999999999886421      23444456777999999999 7  899999999998 99999987653 2222    


Q ss_pred             ---------cccccceeEEEEecC---CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC--
Q 035558          171 ---------QRHQASVNAIAWAPH---SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ--  236 (253)
Q Consensus       171 ---------~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  236 (253)
                               ..|...+.+++|+|+   + .+|++++.|+.+.+|+........     .....+|...|++++|+|++  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          155 EMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLHV-----AAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             EEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEEE-----EEECCCCCSCEEEEEECCCSSC
T ss_pred             cccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCceee-----eeecCCCCcceeEEEECCCCCC
Confidence                     257788999999997   6 699999999999888776654211     13556799999999999998  


Q ss_pred             --CceEEEEcCCcEEEEEC
Q 035558          237 --PDWVAIAFSTKLQILRV  253 (253)
Q Consensus       237 --~~~~~~~~~~~i~vw~l  253 (253)
                        ..+++++.|+.|++|++
T Consensus       229 ~~~~l~s~~~dg~i~iwd~  247 (351)
T 3f3f_A          229 WYQLIATGCKDGRIRIFKI  247 (351)
T ss_dssp             SSEEEEEEETTSCEEEEEE
T ss_pred             cceEEEEEcCCCeEEEEeC
Confidence              67889999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.1e-32  Score=241.38  Aligned_cols=238  Identities=15%  Similarity=0.274  Sum_probs=197.2

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      +++.+|++++ + .|++||+.++    +....+.+|.     ..|.+++|+|. +..++++|+.||.|++||+++++...
T Consensus       667 ~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~  737 (1249)
T 3sfz_A          667 SDDSYIATCSADKKVKIWDSATG----KLVHTYDEHS-----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN  737 (1249)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTC----CEEEEEECCS-----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE
T ss_pred             cCCCEEEEEeCCCeEEEEECCCC----ceEEEEcCCC-----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh
Confidence            3566777776 5 9999999987    8888999998     89999999942 56689999999999999999999999


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee-----------------------------------
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY-----------------------------------  123 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------------------  123 (253)
                      .+.+|...|.+++|+ +++++++++.||.|++||+++++....+.                                   
T Consensus       738 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  817 (1249)
T 3sfz_A          738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA  817 (1249)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred             eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence            999999999999999 99999999999999999998764322111                                   


Q ss_pred             -----------------ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC
Q 035558          124 -----------------ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS  186 (253)
Q Consensus       124 -----------------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  186 (253)
                                       ....+...+.+++|+| ++.++++++.++. |++||+.+.. .+..+.+|...|.+++|+|++
T Consensus       818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~-v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg  894 (1249)
T 3sfz_A          818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYC-VELWNIDSRL-KVADCRGHLSWVHGVMFSPDG  894 (1249)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSC-EEEEETTTTE-EEEEECCCSSCEEEEEECTTS
T ss_pred             CCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCe-EEEEEcCCCc-eeeecCCCccceEEEEECCCC
Confidence                             0114556889999999 8999999999998 9999999865 478889999999999999999


Q ss_pred             CCeEEEecCCCcEEEEeccCCCCCC-------------------------------------------------------
Q 035558          187 SCHICTAGDDSQALIWDLSSMGQPV-------------------------------------------------------  211 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------------------------  211 (253)
                       .+|++++.||.|++|++.......                                                       
T Consensus       895 -~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g  973 (1249)
T 3sfz_A          895 -SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL  973 (1249)
T ss_dssp             -SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS
T ss_pred             -CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC
Confidence             699999999999999975310000                                                       


Q ss_pred             -----------------CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          212 -----------------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       212 -----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                                       ..........+|...|.+++|+|+++.+++++.|+.+++|++
T Consensus       974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                             000112234568899999999999999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.8e-32  Score=233.78  Aligned_cols=208  Identities=13%  Similarity=0.162  Sum_probs=184.0

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG  106 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg  106 (253)
                      +....+.+|.     ..|++++|+ |++++|++|+.||.|++||+.+++.+..+.+|..+|.+++|+ ++++|++++.||
T Consensus         4 ~~~~~~~~h~-----~~v~~i~~s-p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg   77 (814)
T 3mkq_A            4 DIKKTFSNRS-----DRVKGIDFH-PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF   77 (814)
T ss_dssp             CCEEEEEEEC-----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             ccceeeecCC-----CceEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC
Confidence            5677888998     899999999 899999999999999999999999999999999999999999 999999999999


Q ss_pred             cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEec-C
Q 035558          107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP-H  185 (253)
Q Consensus       107 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~  185 (253)
                      .|++||+.+++....+   ..|...|.+++|+| ++.++++++.|+. |++||+++.......+..|...|.+++|+| +
T Consensus        78 ~i~vw~~~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDF---EAHPDYIRSIAVHP-TKPYVLSGSDDLT-VKLWNWENNWALEQTFEGHEHFVMCVAFNPKD  152 (814)
T ss_dssp             EEEEEETTTCCEEEEE---ECCSSCEEEEEECS-SSSEEEEEETTSE-EEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred             eEEEEECCCCcEEEEE---ecCCCCEEEEEEeC-CCCEEEEEcCCCE-EEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence            9999999988744333   45667999999999 8999999999998 999999887555778888999999999999 6


Q ss_pred             CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC--CCCceEEEEcCCcEEEEEC
Q 035558          186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS--SQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~vw~l  253 (253)
                      + .+|++++.||.|++||+.......      .....+...+..++|+|  +++.+++++.|+.+++|++
T Consensus       153 ~-~~l~~~~~dg~v~vwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~  215 (814)
T 3mkq_A          153 P-STFASGCLDRTVKVWSLGQSTPNF------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (814)
T ss_dssp             E-EEEEEEETTSEEEEEETTCSSCSE------EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred             C-CEEEEEeCCCeEEEEECCCCccee------EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            6 699999999999999998766443      23334558999999999  8988999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=233.58  Aligned_cols=211  Identities=19%  Similarity=0.299  Sum_probs=175.9

Q ss_pred             eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc--CceeeeeeecccccEEEEEec-C--CCeEEEEeC
Q 035558           30 KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE--REAVDTQLIAHDKEVYDIAWG-G--VGVFASVSA  104 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~  104 (253)
                      ...+.+|.     ++|++++|+ +++++|++|+.||.|++||+.  +++....+.+|..+|++++|+ +  +++|++|+.
T Consensus         2 ~~~l~gH~-----~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A            2 VVIANAHN-----ELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             ------CC-----CCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred             eeecccCc-----ceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence            35678888     999999999 889999999999999999998  556778888999999999998 6  899999999


Q ss_pred             CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC--CCEEEEEEeCCCeEEEEECCCCC-CCeeeecccccceeEEE
Q 035558          105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD--PRYMATIIMDSAKVVVLDIRFPT-LPVVELQRHQASVNAIA  181 (253)
Q Consensus       105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~  181 (253)
                      ||.|++||+++++. ........+...|.+++|+| +  +.++++++.|+. |++||++... .....+..|...|.+++
T Consensus        76 Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~-I~vwdl~~~~~~~~~~~~~~~~~v~~l~  152 (753)
T 3jro_A           76 DGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGK-VSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (753)
T ss_dssp             TSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSE-EEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred             CCeEEEEECCCCcc-cccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCc-EEEEEeecCCCcceeEeecCCCceEEEE
Confidence            99999999998752 23334456777999999999 6  899999999998 9999998863 33556778999999999


Q ss_pred             EecC-------------CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC---CCceEEEEcC
Q 035558          182 WAPH-------------SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS---QPDWVAIAFS  245 (253)
Q Consensus       182 ~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~  245 (253)
                      |+|.             + .+|++|+.||.|++||+++.....   .......+|..+|++++|+|+   +..+++++.|
T Consensus       153 ~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          153 WAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTY---VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             ECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEE---EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred             ecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccc---eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence            9994             6 699999999999999999875322   112355689999999999999   8888899999


Q ss_pred             CcEEEEEC
Q 035558          246 TKLQILRV  253 (253)
Q Consensus       246 ~~i~vw~l  253 (253)
                      +.|++|++
T Consensus       229 g~I~iwd~  236 (753)
T 3jro_A          229 RTCIIWTQ  236 (753)
T ss_dssp             SCEEEEEE
T ss_pred             CEEEEecC
Confidence            99999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.9e-31  Score=211.31  Aligned_cols=216  Identities=18%  Similarity=0.246  Sum_probs=186.1

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +.++++++ + .|++||+.++    +....+.+|.     ..|.+++|+   ++.+++|+.||.|++||+++++.+..+.
T Consensus       169 ~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~-----~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~  236 (445)
T 2ovr_B          169 DNIIISGSTDRTLKVWNAETG----ECIHTLYGHT-----STVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLM  236 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTT----EEEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCcC----cEEEEECCCC-----CcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence            45777776 5 9999999987    7888899998     899999997   5789999999999999999999999999


Q ss_pred             cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558           83 AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus        83 ~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      +|...|.+++| +++.+++++.||.|++||+++++..   .....+...|.+++|   ++.++++++.|+. |++||+++
T Consensus       237 ~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~---~~~~l~~~~~d~~-i~i~d~~~  308 (445)
T 2ovr_B          237 GHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCL---HTLQGHTNRVYSLQF---DGIHVVSGSLDTS-IRVWDVET  308 (445)
T ss_dssp             CCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEE---EEECCCSSCEEEEEE---CSSEEEEEETTSC-EEEEETTT
T ss_pred             CCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEe---EEecCCCCceEEEEE---CCCEEEEEeCCCe-EEEEECCC
Confidence            99999999999 6889999999999999999987643   333466679999999   6789999999999 99999998


Q ss_pred             CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec---cCCCceeEEEEcCCCCce
Q 035558          163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY---TAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~  239 (253)
                      .+ ++..+.+|...+.++.++  + .+|++|+.||.|++||+++++...       ...   .|...|.+++|++  +.+
T Consensus       309 ~~-~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~v~~~~~~~--~~l  375 (445)
T 2ovr_B          309 GN-CIHTLTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQCLQ-------TLQGPNKHQSAVTCLQFNK--NFV  375 (445)
T ss_dssp             CC-EEEEECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEEE-------EECSTTSCSSCEEEEEECS--SEE
T ss_pred             CC-EEEEEcCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcEEE-------EEccCCCCCCCEEEEEECC--CEE
Confidence            66 478888999999988875  4 489999999999999998876432       333   3889999999974  578


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.|+.|++|++
T Consensus       376 ~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          376 ITSSDDGTVKLWDL  389 (445)
T ss_dssp             EEEETTSEEEEEET
T ss_pred             EEEeCCCeEEEEEC
Confidence            89999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.8e-31  Score=208.16  Aligned_cols=217  Identities=12%  Similarity=0.096  Sum_probs=180.0

Q ss_pred             CCc-eEEeec-C-cEEEEEc-cCCccccceeeeecC--CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC---
Q 035558            4 KPD-LLATSS-D-FLRVWRI-SDEDRRVELKSLLNG--NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER---   74 (253)
Q Consensus         4 ~~~-~l~~~~-~-~v~iw~~-~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---   74 (253)
                      ++. +|++++ + .|++|++ ..+     ....+.+  |.     ..|.+++|+ + +++|++++.|+.|++||+++   
T Consensus        67 ~~~~~l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~~~-----~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           67 NTDLQIYVGTVQGEILKVDLIGSP-----SFQALTNNEAN-----LGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SSSEEEEEEETTSCEEEECSSSSS-----SEEECBSCCCC-----SCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             CCCcEEEEEcCCCeEEEEEeccCC-----ceEeccccCCC-----CceEEEEeC-C-CCEEEEEcCCCeEEEEccccccc
Confidence            466 677766 5 9999999 774     3466777  88     899999999 5 89999999999999999988   


Q ss_pred             ------ceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC-CCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           75 ------EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD-KEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        75 ------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                            ++.+..+. |...|.+++|+ ++  +++++.|+.|++||+++ ....... ....+...+.+++|+|.++++++
T Consensus       135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~  210 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             BCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGGCEEE
T ss_pred             ccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCCCCEEE
Confidence                  77777776 88999999998 54  99999999999999998 5432222 22345568999999984568999


Q ss_pred             EEEeCCCeEEEEECCCC-----CCCeeeeccccc---------ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC
Q 035558          147 TIIMDSAKVVVLDIRFP-----TLPVVELQRHQA---------SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE  212 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~---------~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  212 (253)
                      +++.++. |++||++..     ..+...+..|..         .|.+++|+|++ .+|++++.||.|++||+.+++... 
T Consensus       211 ~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~-  287 (342)
T 1yfq_A          211 CSSIDGR-VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIK-  287 (342)
T ss_dssp             EEETTSE-EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEE-
T ss_pred             EEecCCc-EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhHhh-
Confidence            9999988 999999876     355777887765         99999999999 699999999999999999876443 


Q ss_pred             CCCCCeeeccC-CCceeEEEEcCCCCceEEEEcCCc
Q 035558          213 GGLDPILAYTA-GAEIEQLQWSSSQPDWVAIAFSTK  247 (253)
Q Consensus       213 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~  247 (253)
                            .+.+| ..+|.+++  |+++.+++++.|+.
T Consensus       288 ------~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          288 ------NFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             ------ECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ------hhhcccCCCceEec--CCCCeEEEEecCCc
Confidence                  56677 99999999  99998999999987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=231.12  Aligned_cols=233  Identities=15%  Similarity=0.184  Sum_probs=177.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+||+|+ | .|++|+....    +....+ .|.     .+|.+++|+ + +++|++++.|++|++||+++++.+..
T Consensus        27 pdg~~lAsgs~Dg~I~lw~~~~~----~~~~~~-~~~-----~~V~~l~fs-p-g~~L~S~s~D~~v~lWd~~~~~~~~~   94 (902)
T 2oaj_A           27 FTQNLLAIATVTGEVHIYGQQQV----EVVIKL-EDR-----SAIKEMRFV-K-GIYLVVINAKDTVYVLSLYSQKVLTT   94 (902)
T ss_dssp             TTTTEEEEEETTSEEEEECSTTC----EEEEEC-SSC-----CCEEEEEEE-T-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCc----EEEEEc-CCC-----CCEEEEEEc-C-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence            4677888888 4 9999998774    444333 355     789999999 5 77999999999999999999988888


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee--------eccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII--------YESSEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      +. |...|++++|+ +++++++|+.||.|++||+++.+.....        .....|.++|.+++|+|.++..+++++.+
T Consensus        95 ~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d  173 (902)
T 2oaj_A           95 VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY  173 (902)
T ss_dssp             EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred             Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence            86 77899999999 9999999999999999999987632111        22356778999999999556788998888


Q ss_pred             CCeEEEEECCCCCCCeeeeccc------------------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC-
Q 035558          152 SAKVVVLDIRFPTLPVVELQRH------------------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE-  212 (253)
Q Consensus       152 ~~~i~~~d~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-  212 (253)
                      +. | +||+++.+ ++..+..|                  ...|++++|+|++ .+|++++.||+|++||+++++.... 
T Consensus       174 g~-v-lWd~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r  249 (902)
T 2oaj_A          174 VT-L-TYSLVENE-IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMAR  249 (902)
T ss_dssp             CE-E-EEETTTTE-EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             Cc-E-EEECCCCc-eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEE
Confidence            87 9 99999754 35555544                  5779999999999 6999999999999999988653210 


Q ss_pred             -C----CCCC-----eeeccCCCceeEEEEc----CCCCceE-EEEcCC-----cEEEEE
Q 035558          213 -G----GLDP-----ILAYTAGAEIEQLQWS----SSQPDWV-AIAFST-----KLQILR  252 (253)
Q Consensus       213 -~----~~~~-----~~~~~~~~~v~~~~~~----~~~~~~~-~~~~~~-----~i~vw~  252 (253)
                       .    ...+     .....|..+|++++|+    |++..++ +++.+.     .+++|+
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence             0    0000     0000245689999995    4443455 454542     677775

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=215.77  Aligned_cols=191  Identities=8%  Similarity=0.098  Sum_probs=156.1

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccc-----cEEEEEec-CCCeEEEEeCCCcEEEEEcCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDK-----EVYDIAWG-GVGVFASVSADGSVRVFDLRDK  116 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  116 (253)
                      ..|.+++|+ |++.+||+++.||.|++||.+.  ++..+. |..     .+.+++|+ ++++|++|+.||+|++||+.++
T Consensus        86 ~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           86 CYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             CCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             CcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            789999999 8999999999999999999654  555566 665     49999999 9999999999999999999987


Q ss_pred             CC-------eeeee-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--Ceeee-cccccceeEEEEecC
Q 035558          117 EH-------STIIY-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--PVVEL-QRHQASVNAIAWAPH  185 (253)
Q Consensus       117 ~~-------~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~-~~~~~~i~~~~~~~~  185 (253)
                      ..       ...+. ...+|...|.+++|+| ++  +++++.|+. |++||+.....  ....+ .+|...|.+++|+  
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~t-VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNS-VFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCC-EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCe-EEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            53       11211 1245677999999999 77  788888888 99999987653  23456 4788999999999  


Q ss_pred             CCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE--cCCCCceEEEEcCCcEEEEEC
Q 035558          186 SSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW--SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       186 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      + +.|++++ +++|++||+.+.....       ...+|...+.+++|  +|++..+++++.+|. ++|.+
T Consensus       236 g-~~LASa~-~~tIkLWd~~~~~~~~-------~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          236 D-YKVVLTC-PGYVHKIDLKNYSISS-------LKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             T-TEEEEEC-SSEEEEEETTTTEEEE-------EECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             C-CEEEEEe-CCeEEEEECCCCeEEE-------EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            5 5899887 6999999999866322       34489999999999  999986777777888 99974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.9e-31  Score=205.67  Aligned_cols=218  Identities=11%  Similarity=0.103  Sum_probs=167.7

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++.+|++|++ .+++|+++..    +......  .     ..+..+++. ++++.+ ++++.|+.|++||..+++.+..
T Consensus        29 ~dg~~la~g~~~~~~iw~~~~~----~~~~~~~--~-----~~~~~~~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~~~~   96 (355)
T 3vu4_A           29 QDQSCLILSTLKSFEIYNVHPV----AHIMSQE--M-----RHLSKVRML-HRTNYVAFVTGVKEVVHIWDDVKKQDVSR   96 (355)
T ss_dssp             TTSSEEEEECSSEEEEEEETTE----EEEEEEE--C-----SCCCEEEEC-TTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEcCCEEEEEecCCc----ceeeeee--c-----CCeEEEEEc-CCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence            46789999987 8999998874    3333222  1     246677887 556655 6678889999999999998888


Q ss_pred             eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCC-CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE--EeCCCeEEE
Q 035558           81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDK-EHSTIIYESSEPDTPLVRLGWNKQDPRYMATI--IMDSAKVVV  157 (253)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~~~~~i~~  157 (253)
                      +. +..+|.+++++ .+.++++ .|+.|++||+.+. +....+..      +...+++++   .+++++  +.++. |++
T Consensus        97 ~~-~~~~v~~v~~~-~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~s~---~~la~~sg~~~g~-v~i  163 (355)
T 3vu4_A           97 IK-VDAPVKDLFLS-REFIVVS-YGDVISVFKFGNPWKRITDDIR------FGGVCEFSN---GLLVYSNEFNLGQ-IHI  163 (355)
T ss_dssp             EE-CSSCEEEEEEC-SSEEEEE-ETTEEEEEESSTTCCBSSCCEE------EEEEEEEET---TEEEEEESSCTTC-EEE
T ss_pred             EE-CCCceEEEEEc-CCEEEEE-EcCEEEEEECCCCceeeEEecc------CCceEEEEc---cEEEEeCCCcCcE-EEE
Confidence            87 67799999997 2334443 4789999999987 43333222      344556666   566664  66777 999


Q ss_pred             EECCCCC--------------CC-eeeecccccceeEEEEecCCCCeEEEecCCCc-EEEEeccCCCCCCCCCCCCeeec
Q 035558          158 LDIRFPT--------------LP-VVELQRHQASVNAIAWAPHSSCHICTAGDDSQ-ALIWDLSSMGQPVEGGLDPILAY  221 (253)
Q Consensus       158 ~d~~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~  221 (253)
                      ||+++..              .+ +..+.+|...|++++|+|++ ++|++|+.|++ |++||+++++...       .+.
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~-------~~~  235 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVR-------EFR  235 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEE-------EEE
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEE-------EEE
Confidence            9998754              12 67889999999999999999 69999999998 9999999877543       444


Q ss_pred             -c-CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          222 -T-AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       222 -~-~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                       + |...|.+++|+|+++++++++.|+.+++|++
T Consensus       236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence             4 9999999999999999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.8e-31  Score=206.08  Aligned_cols=210  Identities=11%  Similarity=0.187  Sum_probs=166.5

Q ss_pred             cceeeeecCCCCccccCCeeEEEecCCC---CCEEEEEeCCCeEEEEeccC-ceee-eeeecccccEEEEEec-CCCeEE
Q 035558           27 VELKSLLNGNKNSEYCGPLTSFDWNEAE---PRRIGTSSIDTTCTIWDIER-EAVD-TQLIAHDKEVYDIAWG-GVGVFA  100 (253)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~-~~~~l~  100 (253)
                      .+....+.+|.     ..|++++|+ ++   +++|++|+.||.|++||+++ +..+ ..+.+|...|.+++|+ ++++|+
T Consensus        29 ~~~~~~~~~h~-----~~v~~~~~~-~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           29 MKDIEVTSSPD-----DSIGCLSFS-PPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             TCCEECSSCCS-----SCEEEEEEC-CTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cceeEeccCCC-----CceEEEEEc-CCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            46777888998     899999999 55   69999999999999999987 4444 6788999999999999 999999


Q ss_pred             EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe--eCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccc----
Q 035558          101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW--NKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ----  174 (253)
Q Consensus       101 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----  174 (253)
                      +++.||.|++||+++++....    ..+...|.+++|  +| ++.++++++.|+. |++||+++.+. +..+..+.    
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~-i~vwd~~~~~~-~~~~~~~~~~~~  175 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQI----AQHDAPVKTIHWIKAP-NYSCVMTGSWDKT-LKFWDTRSSNP-MMVLQLPERCYC  175 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEE----EECSSCEEEEEEEECS-SCEEEEEEETTSE-EEEECSSCSSC-SEEEECSSCEEE
T ss_pred             EEcCCCcEEEEEcCCCCceee----ccccCceEEEEEEeCC-CCCEEEEccCCCc-EEEEECCCCcE-EEEEecCCCceE
Confidence            999999999999998864332    246679999999  77 8889999999998 99999987653 44443322    


Q ss_pred             -------------------------------------cceeEEEEecCCC---CeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558          175 -------------------------------------ASVNAIAWAPHSS---CHICTAGDDSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       175 -------------------------------------~~i~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~  214 (253)
                                                           ..+.++++.++..   ..+++++.||.|++||++......   
T Consensus       176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~---  252 (368)
T 3mmy_A          176 ADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK---  252 (368)
T ss_dssp             EEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH---
T ss_pred             EEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc---
Confidence                                                 2344455555441   129999999999999998764210   


Q ss_pred             CCCeeeccCCC------------ceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          215 LDPILAYTAGA------------EIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       215 ~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                       .......|..            +|.+++|+|+++++++++.|+.|++|++
T Consensus       253 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          253 -DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             -HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             -cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence             0123444443            7999999999999999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.6e-31  Score=208.61  Aligned_cols=190  Identities=9%  Similarity=0.103  Sum_probs=152.5

Q ss_pred             CCCceEEe--ec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            3 QKPDLLAT--SS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         3 ~~~~~l~~--~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      ++|+++++  ++ + +|+|||+.+.    +.+..+. |.     ..|.+++|+ |+++++++++.+ .+++|+..+++.+
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~~~----~~~~~~~-~~-----~~V~~v~fs-pdg~~l~s~s~~-~~~~~~~~~~~~~  210 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPSDL----TEKFEIE-TR-----GEVKDLHFS-TDGKVVAYITGS-SLEVISTVTGSCI  210 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETTTT----EEEEEEE-CS-----SCCCEEEEC-TTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred             CCCCEEEEEECCCCCEEEEeECCCC----cEEEEeC-CC-----CceEEEEEc-cCCceEEeccce-eEEEEEeccCcce
Confidence            35666543  33 4 8999999987    6666665 55     689999999 899999999865 5666666666544


Q ss_pred             e--eeecccccEEEEEec-CCCeEEEEeCCC----cEEEEEcCCCCCee-eeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           79 T--QLIAHDKEVYDIAWG-GVGVFASVSADG----SVRVFDLRDKEHST-IIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        79 ~--~~~~~~~~v~~~~~~-~~~~l~~~~~dg----~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      .  ....|...|.+++|+ ++..+++++.|+    .+++||+....... .......+...|++++|+| ++++||+|+.
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~  289 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASN  289 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEET
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcC
Confidence            3  345788999999999 999999999887    68889987765322 2233446667999999999 9999999999


Q ss_pred             CCCeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          151 DSAKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      |+. |++||+++.+. +.. +.+|...|++++|+|++ ++|++||.|++|+|||+....
T Consensus       290 D~~-V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          290 DNS-IALVKLKDLSM-SKIFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             TSC-EEEEETTTTEE-EEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTTT
T ss_pred             CCE-EEEEECCCCcE-EEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC
Confidence            999 99999998664 655 57899999999999999 699999999999999997543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-30  Score=201.79  Aligned_cols=221  Identities=10%  Similarity=0.070  Sum_probs=163.3

Q ss_pred             EEeec-C-cEEEEEccCCc-----cccceeeeec-CCCCccccCCeeEEEecCC--CCCEEEEEeCCCeEEEEeccCcee
Q 035558            8 LATSS-D-FLRVWRISDED-----RRVELKSLLN-GNKNSEYCGPLTSFDWNEA--EPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         8 l~~~~-~-~v~iw~~~~~~-----~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      +++++ | +|++|+.....     ...+.+.... +|.     .+|.+++|+ +  +++++++|+.||.|++||+++++.
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~~  161 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA-----NEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDSQ  161 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS-----SCEEEEECC-C---CCEEEEEETTCCEEEEESSSSCE
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC-----CCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            56665 5 99999876420     0012233332 555     789999999 7  899999999999999999999888


Q ss_pred             eeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           78 DTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        78 ~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ..... .|...|.+++|+ ++.+|++|+.||.|++||+++++....... ..|..+|.+++|+| ++.+|++++ ++. |
T Consensus       162 ~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~fs~-~g~~l~s~~-~~~-v  237 (343)
T 3lrv_A          162 YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-VDEEAKIKEVKFAD-NGYWMVVEC-DQT-V  237 (343)
T ss_dssp             EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-CCTTSCEEEEEECT-TSSEEEEEE-SSB-E
T ss_pred             EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-ccCCCCEEEEEEeC-CCCEEEEEe-CCe-E
Confidence            66554 455689999999 999999999999999999999875411221 13677999999999 999999999 556 9


Q ss_pred             EEEECCCCCCCeeeec---cccccee--EEEEecCCCCeEEEecC-CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE
Q 035558          156 VVLDIRFPTLPVVELQ---RHQASVN--AIAWAPHSSCHICTAGD-DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ  229 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~---~~~~~i~--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  229 (253)
                      ++||+++... +..+.   .|...+.  +++|+|++ ++|++++. |+.|++|++.......       ..    .++..
T Consensus       238 ~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~~~~-------~~----~~~~~  304 (343)
T 3lrv_A          238 VCFDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKTKNW-------TK----DEESA  304 (343)
T ss_dssp             EEEETTSSTT-CBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCSE-------EE----EEEEE
T ss_pred             EEEEcCCCCc-ceeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccccce-------Ee----cCcee
Confidence            9999998663 33333   2444444  69999999 69999887 9999999997765332       11    56777


Q ss_pred             EEEcC---CCCceEEEEcCCcEEEE
Q 035558          230 LQWSS---SQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       230 ~~~~~---~~~~~~~~~~~~~i~vw  251 (253)
                      ++|.+   +...+++++.|+.+.++
T Consensus       305 ~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          305 LCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CCC----CCCCEEEEEEETTEEEEE
T ss_pred             EecCccccccceeEEEecCCceEEE
Confidence            88887   77777788888877765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-30  Score=209.16  Aligned_cols=226  Identities=8%  Similarity=0.008  Sum_probs=176.3

Q ss_pred             CCce-EEeec-C-cEEEEEcc--CCccccceeeeec--CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558            4 KPDL-LATSS-D-FLRVWRIS--DEDRRVELKSLLN--GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         4 ~~~~-l~~~~-~-~v~iw~~~--~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      ++.+ +++++ + .|++|++.  .+    +....+.  .|.     ..|.+++|+ +++++|++|+.+|.|++|++.+++
T Consensus       113 d~~~l~~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~-----~~v~~~~~s-p~~~~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          113 DESRLIACADSDKSLLVFDVDKTSK----NVLKLRKRFCFS-----KRPNAISIA-EDDTTVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECSSSS----SCEEEEEEEECS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTSCC
T ss_pred             CCCEEEEEECCCCeEEEEECcCCCC----ceeeeeecccCC-----CCceEEEEc-CCCCEEEEEeCCCcEEEEecCCcc
Confidence            4445 47776 5 99999998  65    5666665  455     789999999 899999999999999999998877


Q ss_pred             eee----eeecccccEEEEEec-C---CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           77 VDT----QLIAHDKEVYDIAWG-G---VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        77 ~~~----~~~~~~~~v~~~~~~-~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      ...    .+.+|...|++++|+ +   +.+|++++.|+.|++||+++++.....  ...|...|.+++|+  ++.+|+++
T Consensus       183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~h~~~v~~~~~s--d~~~l~s~  258 (450)
T 2vdu_B          183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW--LFGHKHFVSSICCG--KDYLLLSA  258 (450)
T ss_dssp             CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE--CCCCSSCEEEEEEC--STTEEEEE
T ss_pred             cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee--ecCCCCceEEEEEC--CCCEEEEE
Confidence            554    778899999999999 8   889999999999999999988754332  34567799999999  88999999


Q ss_pred             EeCCCeEEEEECCCCCCCeeeecc-------------------------cccceeEEEEecCCCCeEEEec-CCCcEEEE
Q 035558          149 IMDSAKVVVLDIRFPTLPVVELQR-------------------------HQASVNAIAWAPHSSCHICTAG-DDSQALIW  202 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iw  202 (253)
                      +.|+. |++||+++++. +..+..                         ....|.+++|+|++ .+|++++ .|+.|++|
T Consensus       259 ~~d~~-v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw  335 (450)
T 2vdu_B          259 GGDDK-IFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIIL  335 (450)
T ss_dssp             ESSSE-EEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEE
T ss_pred             eCCCe-EEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEE
Confidence            99998 99999998653 555542                         23568999999999 5888887 89999999


Q ss_pred             ec--cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc-------CCcEEEEE
Q 035558          203 DL--SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF-------STKLQILR  252 (253)
Q Consensus       203 d~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~i~vw~  252 (253)
                      ++  .......    .......| ..|.+++|+|++ .+++.+.       ++.|.+|.
T Consensus       336 ~~~~~~~~~l~----~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~  388 (450)
T 2vdu_B          336 EMSEKQKGDLA----LKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIE  388 (450)
T ss_dssp             EECSSSTTCEE----EEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEE
T ss_pred             EeccCCCCcee----eccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEE
Confidence            99  4332111    01234445 889999999954 4555543       44578875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-31  Score=228.55  Aligned_cols=206  Identities=11%  Similarity=0.129  Sum_probs=166.6

Q ss_pred             cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEc
Q 035558           34 NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDL  113 (253)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~  113 (253)
                      .+|.     ..|++++|+ |++++||+|+.||.|++|+....+....+. |..+|.+++|+.+++|++++.|++|++||+
T Consensus        14 ~gh~-----~~V~~lafs-pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~~v~lWd~   86 (902)
T 2oaj_A           14 YGMS-----SKPIAAAFD-FTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKDTVYVLSL   86 (902)
T ss_dssp             EECS-----SCEEEEEEE-TTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTCEEEEEET
T ss_pred             cCCC-----CCcEEEEEC-CCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcCeEEEEEC
Confidence            3677     899999999 899999999999999999998777655543 788999999995558999999999999999


Q ss_pred             CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe----------eeecccccceeEEEEe
Q 035558          114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV----------VELQRHQASVNAIAWA  183 (253)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~----------~~~~~~~~~i~~~~~~  183 (253)
                      ++++....+.    +...|++++|+| +++++++|+.|+. |++||+++.....          ..+.+|...|++++|+
T Consensus        87 ~~~~~~~~~~----~~~~V~~v~~sp-~g~~l~sgs~dg~-V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           87 YSQKVLTTVF----VPGKITSIDTDA-SLDWMLIGLQNGS-MIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             TTCSEEEEEE----CSSCEEEEECCT-TCSEEEEEETTSC-EEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             CCCcEEEEEc----CCCCEEEEEECC-CCCEEEEEcCCCc-EEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence            9887544442    345899999999 9999999999999 9999998754210          2346788999999999


Q ss_pred             cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC-----C------eeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          184 PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD-----P------ILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       184 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |++...|++|+.||.| +||+++.+........     +      .....|...|++++|+|+++++++++.|+.|++|+
T Consensus       161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            9754689999999999 9999886532200000     0      01123467899999999999999999999999998


Q ss_pred             C
Q 035558          253 V  253 (253)
Q Consensus       253 l  253 (253)
                      +
T Consensus       240 ~  240 (902)
T 2oaj_A          240 A  240 (902)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=9.8e-31  Score=205.48  Aligned_cols=209  Identities=14%  Similarity=0.191  Sum_probs=167.1

Q ss_pred             eecCCCCccccCCeeEEEecCC---CCCEEEEEeCCCeEEEEeccCceeeeeeec-----ccccEEEEEec-C----CCe
Q 035558           32 LLNGNKNSEYCGPLTSFDWNEA---EPRRIGTSSIDTTCTIWDIEREAVDTQLIA-----HDKEVYDIAWG-G----VGV   98 (253)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~-~----~~~   98 (253)
                      ...+|.     .+|++++|+|.   ....+++++.++.|++||+.+++.+..+..     |...|.+++|+ +    +.+
T Consensus        13 ~~~~h~-----~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   87 (366)
T 3k26_A           13 LKEDHN-----QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPL   87 (366)
T ss_dssp             EECTTC-----SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred             eecCCC-----CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence            445788     89999999952   355566666778999999998877666654     55789999999 6    679


Q ss_pred             EEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee---ccccc
Q 035558           99 FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL---QRHQA  175 (253)
Q Consensus        99 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~  175 (253)
                      |++++.||.|++||+.+++....   ...+...|.+++|+|.++.+|++++.|+. |++||+++.+ .+..+   ..|..
T Consensus        88 l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~-~~~~~~~~~~~~~  162 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQCIKH---YVGHGNAINELKFHPRDPNLLLSVSKDHA-LRLWNIQTDT-LVAIFGGVEGHRD  162 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCEEEE---EESCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTTTE-EEEEECSTTSCSS
T ss_pred             EEEecCCCEEEEEEchhceEeee---ecCCCCcEEEEEECCCCCCEEEEEeCCCe-EEEEEeecCe-EEEEecccccccC
Confidence            99999999999999998874433   34567799999999978899999999999 9999999765 35665   67999


Q ss_pred             ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCC---------------------CCCCCeeeccCCCceeEEEEcC
Q 035558          176 SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVE---------------------GGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       176 ~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      .|.+++|+|++ .+|++++.||.|++||+++.+....                     ..........|...|.+++|+ 
T Consensus       163 ~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-  240 (366)
T 3k26_A          163 EVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-  240 (366)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred             ceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence            99999999998 6999999999999999987542110                     000011223489999999999 


Q ss_pred             CCCceEEEEcCCcEEEEEC
Q 035558          235 SQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       235 ~~~~~~~~~~~~~i~vw~l  253 (253)
                       +..+++++.|+.|++|++
T Consensus       241 -~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          241 -GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             -TTEEEEECSSSEEEEEEE
T ss_pred             -CCEEEEEecCCEEEEEeC
Confidence             557889999999999984

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=9.3e-29  Score=194.18  Aligned_cols=228  Identities=13%  Similarity=0.152  Sum_probs=165.0

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~   81 (253)
                      ..++++++ + +|++||..++    +.+..+. +.     .+|.+++|+ ++  .++++. |+.|++||+.++ +.+..+
T Consensus        71 ~~~~~~~~~d~~v~iWd~~~~----~~~~~~~-~~-----~~v~~v~~~-~~--~~~~~~-~~~i~i~d~~~~~~~~~~~  136 (355)
T 3vu4_A           71 NYVAFVTGVKEVVHIWDDVKK----QDVSRIK-VD-----APVKDLFLS-RE--FIVVSY-GDVISVFKFGNPWKRITDD  136 (355)
T ss_dssp             SEEEEECSSTTEEEEEETTTT----EEEEEEE-CS-----SCEEEEEEC-SS--EEEEEE-TTEEEEEESSTTCCBSSCC
T ss_pred             CEEEEEECCccEEEEEECCCC----cEEEEEE-CC-----CceEEEEEc-CC--EEEEEE-cCEEEEEECCCCceeeEEe
Confidence            33434444 5 9999999887    6677776 44     689999998 43  455544 789999999988 777666


Q ss_pred             ecccccEEEEEecCCCeEEE--EeCCCcEEEEEcCCCCCe------------ee-eeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           82 IAHDKEVYDIAWGGVGVFAS--VSADGSVRVFDLRDKEHS------------TI-IYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~------------~~-~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                      ..   +...++++. ..++.  |+.||.|++||++++...            .. +.....|...|.+++|+| ++++|+
T Consensus       137 ~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~  211 (355)
T 3vu4_A          137 IR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVA  211 (355)
T ss_dssp             EE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             cc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEE
Confidence            64   223333333 56666  588999999999975410            01 333457788999999999 999999


Q ss_pred             EEEeCCCeEEEEECCCCCCCeeeec-c-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC-------
Q 035558          147 TIIMDSAKVVVLDIRFPTLPVVELQ-R-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP-------  217 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------  217 (253)
                      +++.|+..|++||+++.+. +..+. + |...|++++|+|++ ++|++++.|++|++||++............       
T Consensus       212 s~s~d~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  289 (355)
T 3vu4_A          212 TCSQDGTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYF  289 (355)
T ss_dssp             EEETTCSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred             EEeCCCCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeecccc
Confidence            9999984499999998664 77777 5 99999999999999 699999999999999998754211000000       


Q ss_pred             ------e---eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          218 ------I---LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       218 ------~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                            .   .......+...++|+++++.+++++.|+.+++|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          290 QSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             CCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             ccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                  0   00112233477999999998999999999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.6e-30  Score=205.71  Aligned_cols=241  Identities=15%  Similarity=0.142  Sum_probs=157.2

Q ss_pred             CCCCceEEeecC-cEEEEEccCCcc------ccceeeeecCCCCccccCCeeEEEec-------------------CCCC
Q 035558            2 CQKPDLLATSSD-FLRVWRISDEDR------RVELKSLLNGNKNSEYCGPLTSFDWN-------------------EAEP   55 (253)
Q Consensus         2 p~~~~~l~~~~~-~v~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~~~   55 (253)
                      |..+.+++++.+ .|++|+......      ....+..+. +.     .++..+.|+                   |+++
T Consensus        28 ~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (393)
T 4gq1_A           28 PSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQ-TG-----LPTLHLSFSSSCSYSENLHDGDGNVNSSPVYS  101 (393)
T ss_dssp             GGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEE-CS-----SCEEEEEECTTCEEECC----------CCEEE
T ss_pred             CCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEe-cC-----CCeeeEeecCCccccccccCCCcceeecCCCC
Confidence            456678888888 999998754210      011111111 11     233333333                   3556


Q ss_pred             CEEEEEeCCCeEEEEeccCcee-----eeeeecccccEEEEEec---------CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           56 RRIGTSSIDTTCTIWDIEREAV-----DTQLIAHDKEVYDIAWG---------GVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        56 ~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~---------~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      .+|++|+.|++|++||.+.++.     +..+.+|.+.|++++|+         ++++|++++.|++|++||+++..+...
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            7899999999999999988764     33467899999999996         467999999999999999988764333


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe------------------------eeecccccce
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV------------------------VELQRHQASV  177 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~------------------------~~~~~~~~~i  177 (253)
                      ..   .+...+.+++|+|.+..+|++++.|+. |++||+++.....                        ....+|...+
T Consensus       182 ~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~-v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          182 GY---PLSSPGISVQFRPSNPNQLIVGERNGN-IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EE---ECSSCEEEEEEETTEEEEEEEEETTSE-EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             ec---CCCCCcEEEEECCCCCceEEecCCCCE-EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            33   445589999999955568999999998 9999998764211                        1123577788


Q ss_pred             eEEEEe-cCCCCeEEEecCCCcEEEEeccCCCCCCCCC-----------CCCeeeccCCCceeEEEEcC-CCCceE-EEE
Q 035558          178 NAIAWA-PHSSCHICTAGDDSQALIWDLSSMGQPVEGG-----------LDPILAYTAGAEIEQLQWSS-SQPDWV-AIA  243 (253)
Q Consensus       178 ~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~-~~~~~~-~~~  243 (253)
                      .++.|. |++ ..|++++.|+++++||+..........           .................|+| .+..++ +++
T Consensus       258 ~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs  336 (393)
T 4gq1_A          258 ANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS  336 (393)
T ss_dssp             SEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred             eeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence            999987 677 699999999999999998765322000           00001111112222333444 333344 566


Q ss_pred             cCCcEEEEEC
Q 035558          244 FSTKLQILRV  253 (253)
Q Consensus       244 ~~~~i~vw~l  253 (253)
                      .|+.|++|++
T Consensus       337 ~Dg~V~lwd~  346 (393)
T 4gq1_A          337 QHGLIQLINT  346 (393)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCEEEEEEC
Confidence            7999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2e-29  Score=192.09  Aligned_cols=186  Identities=13%  Similarity=0.149  Sum_probs=142.1

Q ss_pred             CCceEEeec---C-cEEEEEccC-CccccceeeeecCCCCccccCCeeEEEecC--CCCCEEEEEeCCCeEEEEeccCce
Q 035558            4 KPDLLATSS---D-FLRVWRISD-EDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         4 ~~~~l~~~~---~-~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      +++++.+++   + .|++|++.. +    +.+..+.+|.     ..+..++|+|  -++.+|++|+.|++|+|||+++++
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG----~~~~s~~~~~-----~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk  214 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDG----GGKENQFLMP-----PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ  214 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTS----CEEEEEEECC-----CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCC----ceeeeeccCC-----CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence            566777754   5 999999944 4    6677777888     7788888883  167999999999999999999999


Q ss_pred             eeeeeeccc---ccEEEEEec-CCCeE------------EEEeCCCcEEEEEcCCCCCeeeeec--cCCCCCCeeEEEee
Q 035558           77 VDTQLIAHD---KEVYDIAWG-GVGVF------------ASVSADGSVRVFDLRDKEHSTIIYE--SSEPDTPLVRLGWN  138 (253)
Q Consensus        77 ~~~~~~~~~---~~v~~~~~~-~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~  138 (253)
                      +++++.+|.   ..+.+++|+ ++.++            ++|+.|++|++||..+++....+..  ..++...+.+..+ 
T Consensus       215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~-  293 (356)
T 2w18_A          215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV-  293 (356)
T ss_dssp             EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE-
T ss_pred             EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc-
Confidence            999998654   357777899 88776            6688999999999998875443321  2344434433333 


Q ss_pred             CCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee-EEEEecCCCCeEEEecCCCcEEEEec
Q 035558          139 KQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN-AIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       139 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                        ++.++++++.|+. |++||+++++ .+.++.+|...+. +++|+|++ ++|++|+.|++|+|||+
T Consensus       294 --sg~~lASgS~DgT-IkIWDl~tGk-~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 --KDHCAAAILTSGT-IAIWDLLLGQ-CTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --ETTEEEEEETTSC-EEEEETTTCS-EEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred             --CCCEEEEEcCCCc-EEEEECCCCc-EEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence              3678999999998 9999999876 4888988887655 68999999 69999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.3e-28  Score=197.94  Aligned_cols=226  Identities=9%  Similarity=-0.019  Sum_probs=180.0

Q ss_pred             CCCCCceEEeecC--cEEEEEccCCccccceee-----eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc
Q 035558            1 ECQKPDLLATSSD--FLRVWRISDEDRRVELKS-----LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE   73 (253)
Q Consensus         1 sp~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~   73 (253)
                      +| ++.+++++++  .|++||+.++    +...     .+.+|.     ..|.+++|+ +++.++++++.|+.|++||++
T Consensus       131 s~-~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~-----~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          131 ID-NTRLAIPLLEDEGMDVLDINSG----QTVRLSPPEKYKKKL-----GFVETISIP-EHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             SS-SSEEEEEBTTSSSEEEEETTTC----CEEEECCCHHHHTTC-----CEEEEEEEG-GGTEEEEEEGGGTEEEEEETT
T ss_pred             eC-CCeEEEEeCCCCeEEEEECCCC----eEeeecCcccccccC-----CceeEEEEc-CCCEEEEEECCCCEEEEEECC
Confidence            35 6777887774  8999999886    4444     455676     789999998 889999999999999999999


Q ss_pred             CceeeeeeecccccEEEEEec-CCCeEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-
Q 035558           74 REAVDTQLIAHDKEVYDIAWG-GVGVFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-  150 (253)
Q Consensus        74 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-  150 (253)
                      +++.+..+..|...+.+++|+ +++.++ +++.|+.|++||+++++....+   .. ...+.+++|+| +++.+++++. 
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---~~-~~~~~~~~~~~-~g~~l~~~~~~  274 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT---DK-IGLPRGLLLSK-DGKELYIAQFS  274 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---CC-CSEEEEEEECT-TSSEEEEEEEE
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---cC-CCCceEEEEcC-CCCEEEEEECC
Confidence            999888888899999999999 887774 5558999999999987633222   22 33689999999 8888888874 


Q ss_pred             -------CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558          151 -------DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA  223 (253)
Q Consensus       151 -------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (253)
                             ++. |++||+++.+  ......|...+.+++|+|++..++++++.|+.|++||+.+++..        ....+
T Consensus       275 ~~~~~~~dg~-i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~--------~~~~~  343 (433)
T 3bws_A          275 ASNQESGGGR-LGIYSMDKEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ--------KSIPV  343 (433)
T ss_dssp             SCTTCSCCEE-EEEEETTTTE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--------EEEEC
T ss_pred             CCccccCCCe-EEEEECCCCc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--------EEecC
Confidence                   555 9999998754  23334566789999999999546677899999999999875422        33457


Q ss_pred             CCceeEEEEcCCCCceEEEEc---------------CCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWVAIAF---------------STKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~~~~---------------~~~i~vw~l  253 (253)
                      ...+.+++|+|+++.+++++.               |+.|++|++
T Consensus       344 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          344 FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence            788999999999987777766               468999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=9e-28  Score=190.68  Aligned_cols=220  Identities=11%  Similarity=0.066  Sum_probs=173.1

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeeee
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      .++++++ + .|++||+.++    +....+..|.      .+.+++|+ ++++++ ++++.|+.|++||+.+++.+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~----~~~~~~~~~~------~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~   71 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN----KVTATIPVGS------NPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVP   71 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT----EEEEEEECSS------SEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCC----eEEEEeecCC------CcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEE
Confidence            4667766 4 9999999987    7777887775      58999999 788766 677789999999999999888887


Q ss_pred             cccccEEEEEec-CCCeEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE-EEEEeCCCeEEEEE
Q 035558           83 AHDKEVYDIAWG-GVGVFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM-ATIIMDSAKVVVLD  159 (253)
Q Consensus        83 ~~~~~v~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~~i~~~d  159 (253)
                      .+. .+.+++|+ +++.++ +++.++.|++||+.+++....+.   . ...+.+++|+| +++.+ ++++.++. |++||
T Consensus        72 ~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~-~~~~~~~~~s~-dg~~l~~~~~~~~~-v~~~d  144 (391)
T 1l0q_A           72 AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---T-GKSPLGLALSP-DGKKLYVTNNGDKT-VSVIN  144 (391)
T ss_dssp             CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---C-SSSEEEEEECT-TSSEEEEEETTTTE-EEEEE
T ss_pred             CCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---C-CCCcceEEECC-CCCEEEEEeCCCCE-EEEEE
Confidence            554 89999999 888765 55567999999999887444332   2 23789999999 77777 56555666 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      +++.+. +..+..+ ..+.+++|+|++..++++++.|+.|++||+++...        .....+...+.+++|+|+++.+
T Consensus       145 ~~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~g~~l  214 (391)
T 1l0q_A          145 TVTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV--------IDTVKVEAAPSGIAVNPEGTKA  214 (391)
T ss_dssp             TTTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--------EEEEECSSEEEEEEECTTSSEE
T ss_pred             CCCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE--------EEEEecCCCccceEECCCCCEE
Confidence            987653 5555544 45699999999953347888999999999988653        2334467789999999999988


Q ss_pred             EEEE---cCCcEEEEEC
Q 035558          240 VAIA---FSTKLQILRV  253 (253)
Q Consensus       240 ~~~~---~~~~i~vw~l  253 (253)
                      ++++   .++.+++|++
T Consensus       215 ~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          215 YVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             EEEEECSSCCEEEEEET
T ss_pred             EEEecCcCCCcEEEEEC
Confidence            8777   6899999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.6e-27  Score=191.18  Aligned_cols=196  Identities=16%  Similarity=0.326  Sum_probs=164.4

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      .++.|+|+ + .+.|++|. |++|+|||..+++....+.  +|...|++|+|+ ++++|++|+.||.|++||+++++.  
T Consensus       107 y~~~l~wS-~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--  181 (420)
T 4gga_A          107 YLNLVDWS-S-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--  181 (420)
T ss_dssp             TCBCEEEC-T-TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--
T ss_pred             cceeEEEC-C-CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--
Confidence            45679998 4 45777765 8999999999998777665  677889999999 999999999999999999998874  


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                       +.....|...+.+++++   +.++++++.++. +++||.+.....+..+.+|...+..+.|+|++ .++++++.|+.++
T Consensus       182 -~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~-i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~  255 (420)
T 4gga_A          182 -LRNMTSHSARVGSLSWN---SYILSSGSRSGH-IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVN  255 (420)
T ss_dssp             -EEEECCCSSCEEEEEEE---TTEEEEEETTSE-EEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             -EEEEeCCCCceEEEeeC---CCEEEEEeCCCc-eeEeeecccceeeEEecccccceeeeeecCCC-Ceeeeeeccccce
Confidence             34445677788888875   578999999998 99999998777778899999999999999999 6999999999999


Q ss_pred             EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE---EcCCcEEEEEC
Q 035558          201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI---AFSTKLQILRV  253 (253)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~i~vw~l  253 (253)
                      +|+...++...   ........|...|.+++|+|.+..+++.   +.|+.|++|++
T Consensus       256 i~~~~~~~~~~---~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~  308 (420)
T 4gga_A          256 VWPSAPGEGGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  308 (420)
T ss_dssp             EEESSCCSSCS---CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred             EEeeccccccc---eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence            99998876432   2234667899999999999998877743   36899999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.9e-28  Score=194.72  Aligned_cols=223  Identities=13%  Similarity=0.131  Sum_probs=163.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee---
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV---   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---   77 (253)
                      ++|.+||+++ + .|++|+...      +...+. |........|.+++|| |++++|++|+.||+|++||+.++..   
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~  166 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIRKNSENTP  166 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEEC-SSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred             CCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEc-CCCCEEEEEcCCCEEEEEECCCCccccc
Confidence            3667777776 5 999999532      555566 6522112369999999 8999999999999999999998752   


Q ss_pred             ----eeee----ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-CCCCCCeeEEEeeCCCCCEEEE
Q 035558           78 ----DTQL----IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES-SEPDTPLVRLGWNKQDPRYMAT  147 (253)
Q Consensus        78 ----~~~~----~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~  147 (253)
                          +.++    .+|...|.+++|+ ++  +++++.|++|++||+.++......... ..|...|.+++|+   ++.+|+
T Consensus       167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LAS  241 (588)
T 2j04_A          167 EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVL  241 (588)
T ss_dssp             CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEE
T ss_pred             cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE---CCEEEE
Confidence                4565    5677899999999 77  889999999999999887632111111 2455689999998   478888


Q ss_pred             EEeCCCeEEEEECCCCCCCeeeecccccceeEEEE--ecCCCCeEEEecCCCcEEEEeccCCC-----CCC---------
Q 035558          148 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAW--APHSSCHICTAGDDSQALIWDLSSMG-----QPV---------  211 (253)
Q Consensus       148 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~---------  211 (253)
                      ++ ++. |++||+..... .....+|...+..++|  +|++ ..|+++++||+ ++|......     ...         
T Consensus       242 a~-~~t-IkLWd~~~~~~-~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~l  316 (588)
T 2j04_A          242 TC-PGY-VHKIDLKNYSI-SSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKK  316 (588)
T ss_dssp             EC-SSE-EEEEETTTTEE-EEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHH
T ss_pred             Ee-CCe-EEEEECCCCeE-EEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEE
Confidence            87 566 99999987553 2333379999999999  9999 69999999999 999874211     000         


Q ss_pred             -CCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          212 -EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       212 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                       .....+.....+...|++++|+|+|+.+++++
T Consensus       317 W~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          317 WSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             TTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred             EECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence             00011122333466799999999998555443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=6.8e-27  Score=185.60  Aligned_cols=223  Identities=9%  Similarity=0.100  Sum_probs=169.5

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCCCeEEEEeccCceee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~   78 (253)
                      |+...++++++ + .|++||+.++    +....+..+      ..+.+++|+ +++++|+ +++.++.|++||+.+++.+
T Consensus        41 ~dg~~l~~~~~~d~~i~v~d~~~~----~~~~~~~~~------~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~  109 (391)
T 1l0q_A           41 PDGTKVYVANAHSNDVSIIDTATN----NVIATVPAG------SSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVA  109 (391)
T ss_dssp             TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECS------SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCEEEEECCCCCeEEEEECCCC----eEEEEEECC------CCccceEEC-CCCCEEEEEECCCCEEEEEECCCCeEE
Confidence            44444556664 5 9999999887    677777665      378999999 7888765 5556799999999999888


Q ss_pred             eeeecccccEEEEEec-CCCeE-EEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE-EEEeCCCeE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVF-ASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA-TIIMDSAKV  155 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~~i  155 (253)
                      ..+.. ...+.+++|+ +++.+ ++++.|+.|++||+++++....+..   + ..+..++|+| +++.++ +++.++. |
T Consensus       110 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~-~~~~~~~~~~-dg~~l~~~~~~~~~-v  182 (391)
T 1l0q_A          110 GTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---G-RSPKGIAVTP-DGTKVYVANFDSMS-I  182 (391)
T ss_dssp             EEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---C-SSEEEEEECT-TSSEEEEEETTTTE-E
T ss_pred             EEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---C-CCcceEEECC-CCCEEEEEeCCCCE-E
Confidence            77774 4568999999 88866 7888899999999998864443322   2 3679999999 777774 5555565 9


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW  232 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  232 (253)
                      ++||+++... +..+. +...+.+++|+|++ ++|++++   .++.|++||+++++...       .... ...+.+++|
T Consensus       183 ~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~-------~~~~-~~~~~~~~~  251 (391)
T 1l0q_A          183 SVIDTVTNSV-IDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKITA-------RIPV-GPDPAGIAV  251 (391)
T ss_dssp             EEEETTTTEE-EEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEEE-------EEEC-CSSEEEEEE
T ss_pred             EEEECCCCeE-EEEEe-cCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEEE-------EEec-CCCccEEEE
Confidence            9999987642 44443 56688999999999 5777776   69999999998765322       3333 345789999


Q ss_pred             cCCCCceE-EEEcCCcEEEEEC
Q 035558          233 SSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       233 ~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      +|+++.++ +++.++.+++|++
T Consensus       252 s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          252 TPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEET
T ss_pred             ccCCCEEEEEcCCCCEEEEEEC
Confidence            99998774 5678999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.2e-27  Score=190.82  Aligned_cols=223  Identities=10%  Similarity=0.081  Sum_probs=174.9

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      +++.++++++.  .|++||+.++    +....+..|.     ..+.+++|+ ++++.+ ++++.|+.|++||+++++.+.
T Consensus       179 ~~~~~~~s~~~d~~v~~~d~~~~----~~~~~~~~~~-----~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          179 EHNELWVSQMQANAVHVFDLKTL----AYKATVDLTG-----KWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             GGTEEEEEEGGGTEEEEEETTTC----CEEEEEECSS-----SSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCc----eEEEEEcCCC-----CCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEEE
Confidence            46778888874  9999999887    7777788887     789999999 777776 455589999999999998887


Q ss_pred             eeecccccEEEEEec-CCCeEEEEe--------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE-EEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVS--------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM-ATII  149 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~  149 (253)
                      .+.. ...+.+++|+ +++.+++++        .||.|++||+++++....+    .+...+.+++|+| +++.+ ++++
T Consensus       249 ~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~-~g~~l~~~~~  322 (433)
T 3bws_A          249 KTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGN-TENKIYVSDM  322 (433)
T ss_dssp             ECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECS-STTEEEEEET
T ss_pred             EecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECC-CCCEEEEEec
Confidence            7765 4568999999 898888888        5889999999987643333    2223788999999 77655 5556


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC---------------CCcEEEEeccCCCCCCCCC
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD---------------DSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~  214 (253)
                      .++. |++||+++.+. +..+. +...+.+++|+|++ ++|++++.               ||.|++||+.+++..    
T Consensus       323 ~~~~-v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~----  394 (433)
T 3bws_A          323 CCSK-IEVYDLKEKKV-QKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK----  394 (433)
T ss_dssp             TTTE-EEEEETTTTEE-EEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE----
T ss_pred             CCCE-EEEEECCCCcE-EEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEE----
Confidence            6666 99999987542 44444 67789999999999 57777765               579999999886532    


Q ss_pred             CCCeeeccCCCceeEEEEcCCCCceEEEEc-CCcEEEEEC
Q 035558          215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAF-STKLQILRV  253 (253)
Q Consensus       215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~vw~l  253 (253)
                          ....+...+.+++|+|+++.+++++. ++.+++|++
T Consensus       395 ----~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          395 ----EFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             ----EEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             ----EEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence                22334567999999999998887775 999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=6e-27  Score=180.65  Aligned_cols=196  Identities=15%  Similarity=0.311  Sum_probs=160.7

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      ..++|+|+ ++ ++|++| .|++|+|||+++++.++.+.  +|...|++++|+ ++++|++|+.||+|++||+++++...
T Consensus        27 y~~~l~WS-~~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           27 YLNLVDWS-SG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             TCBCEEEC-TT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cceEEEEC-CC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence            35789999 55 477766 48999999999999887665  677889999999 99999999999999999999987443


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      .   ...|...+.++.+   ++..+++++.++. +++|+.......+..+.+|...+..+.+.+++ .+|++++.||.|+
T Consensus       104 ~---~~~h~~~~~~~~~---~~~~l~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~  175 (318)
T 4ggc_A          104 N---MTSHSARVGSLSW---NSYILSSGSRSGH-IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVN  175 (318)
T ss_dssp             E---EECCSSCEEEEEE---ETTEEEEEETTSE-EEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             E---ecCccceEEEeec---CCCEEEEEecCCc-eEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCccee
Confidence            3   3456556666655   5578999999888 99999988777778889999999999999999 6999999999999


Q ss_pred             EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE---EEEcCCcEEEEEC
Q 035558          201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV---AIAFSTKLQILRV  253 (253)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~i~vw~l  253 (253)
                      +||+++++...   ........+...|..++++|.+..++   +++.++.+++|+.
T Consensus       176 iwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~  228 (318)
T 4ggc_A          176 VWPSAPGEGGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  228 (318)
T ss_dssp             EEESSCBTTBS---CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred             EEECCCCcccc---cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence            99998876433   22345667888999999999988766   3456788999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.7e-25  Score=177.90  Aligned_cols=211  Identities=14%  Similarity=0.133  Sum_probs=165.1

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---eEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT---TCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|++||++.     .....+.+|.     ..+.+++|+ |+++.|++++.++   .|++||+++++.. .+..|...+.+
T Consensus       160 ~i~i~d~~g-----~~~~~l~~~~-----~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~  227 (415)
T 2hqs_A          160 ELRVSDYDG-----YNQFVVHRSP-----QPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA  227 (415)
T ss_dssp             EEEEEETTS-----CSCEEEEEES-----SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred             eEEEEcCCC-----CCCEEEeCCC-----CcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccC
Confidence            799999986     4456777787     889999999 8999999999875   9999999988765 46678889999


Q ss_pred             EEec-CCCeEE-EEeCCCc--EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCCCC
Q 035558           91 IAWG-GVGVFA-SVSADGS--VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRFPT  164 (253)
Q Consensus        91 ~~~~-~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~~  164 (253)
                      ++|+ +++.|+ +++.++.  |++||+++++.    .....+...+.+++|+| +++.|++++.+++  .|++||+.+..
T Consensus       228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI----RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCE----EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EEEcCCCCEEEEEEecCCCceEEEEECCCCCE----EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCC
Confidence            9999 998777 6666655  99999988763    22234556899999999 8998888876432  37778887654


Q ss_pred             CCeeeecccccceeEEEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                        ...+..+...+.+++|+|+| ++|++++.+   ..|++||+.+++.        ..+..+. .+.+++|+|+++.++.
T Consensus       303 --~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~--------~~l~~~~-~~~~~~~spdg~~l~~  370 (415)
T 2hqs_A          303 --PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV--------QVLSSTF-LDETPSLAPNGTMVIY  370 (415)
T ss_dssp             --CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE--------EECCCSS-SCEEEEECTTSSEEEE
T ss_pred             --EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE--------EEecCCC-CcCCeEEcCCCCEEEE
Confidence              45555677789999999999 578777654   5899999987653        1333343 8999999999998887


Q ss_pred             EEcCC---cEEEEEC
Q 035558          242 IAFST---KLQILRV  253 (253)
Q Consensus       242 ~~~~~---~i~vw~l  253 (253)
                      ++.++   .|.+|++
T Consensus       371 ~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          371 SSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEEETTEEEEEEEET
T ss_pred             EEcCCCccEEEEEEC
Confidence            77766   6888874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.5e-24  Score=172.36  Aligned_cols=225  Identities=11%  Similarity=0.080  Sum_probs=166.7

Q ss_pred             CCCceEEeec------C----cEEEEEc--cCCcccccee--eeecCCCCccccCCeeEEEecCC-------------CC
Q 035558            3 QKPDLLATSS------D----FLRVWRI--SDEDRRVELK--SLLNGNKNSEYCGPLTSFDWNEA-------------EP   55 (253)
Q Consensus         3 ~~~~~l~~~~------~----~v~iw~~--~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-------------~~   55 (253)
                      .+.+++++|+      +    .+++||+  .++    +.+  ..+.+|.     ..+..+++++.             .+
T Consensus        73 ~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           73 LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG----TVLAQNSYKVNK-----QWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             TTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT----CEEEEEEEEECG-----GGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC----CEEeeeEEEcCh-----hHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            3456676653      2    6999999  775    444  5578887     66777776621             15


Q ss_pred             CEEEEEeCC------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC---cEEEEEcCCCCCeeeeecc
Q 035558           56 RRIGTSSID------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG---SVRVFDLRDKEHSTIIYES  125 (253)
Q Consensus        56 ~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~  125 (253)
                      ..++.++.+      +.|++||+.. .....+..|...+.+++|+ +++.|++++.++   .|++||+++++... +   
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l---  218 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V---  218 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E---
T ss_pred             CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e---
Confidence            566666554      7999999974 4566777899999999999 999999999885   99999999887432 2   


Q ss_pred             CCCCCCeeEEEeeCCCCCEEE-EEEeCC-CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC-CC--cEE
Q 035558          126 SEPDTPLVRLGWNKQDPRYMA-TIIMDS-AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD-DS--QAL  200 (253)
Q Consensus       126 ~~~~~~i~~~~~~~~~~~~l~-~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~  200 (253)
                      ..+...+.+++|+| +++.|+ +++.++ ..|++||+++..  ...+..|...+.+++|+|++ ++|++++. ++  .|.
T Consensus       219 ~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          219 ASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             ECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEE
T ss_pred             ecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEE
Confidence            23445899999999 888777 444443 249999998754  56777788899999999999 57777665 55  566


Q ss_pred             EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC---CcEEEEEC
Q 035558          201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS---TKLQILRV  253 (253)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~vw~l  253 (253)
                      +||+.++..        .....+...+.+++|+|++++++.++.+   ..|.+|++
T Consensus       295 ~~d~~~~~~--------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          295 KVNINGGAP--------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             EEETTSSCC--------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             EEECCCCCE--------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            778776542        2444567789999999999988776654   47888874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=6.6e-24  Score=161.59  Aligned_cols=214  Identities=12%  Similarity=0.163  Sum_probs=159.0

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-ceeeeeeecc-cccEEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-EAVDTQLIAH-DKEVYDI   91 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~-~~~v~~~   91 (253)
                      .|++||+.++    +.. .+..|.     ..|.+++|+ |++++|++++ ++.|++||+.+ ++.......+ ...+.++
T Consensus        23 ~i~~~d~~~~----~~~-~~~~~~-----~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           23 SIEIFNIRTR----KMR-VVWQTP-----ELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             EEEEEETTTT----EEE-EEEEES-----SCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             eEEEEeCCCC----cee-eeccCC-----cceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccce
Confidence            8999999885    333 445566     789999999 8999999887 78999999998 7766666555 3678999


Q ss_pred             Eec-CCCeEEEEe--CCCcEEEEEc--CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE-EEEeCCCeEEEEECCCCCC
Q 035558           92 AWG-GVGVFASVS--ADGSVRVFDL--RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA-TIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus        92 ~~~-~~~~l~~~~--~dg~i~i~d~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~~i~~~d~~~~~~  165 (253)
                      +|+ +++.|++++  .++...+|.+  .++.. ..+   ... ..+..++|+| +++.++ +++.++. +.+|++.....
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~-~~~~~~~~sp-dg~~l~~~~~~~~~-~~l~~~~~~~~  163 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM---TKN-LPSYWHGWSP-DGKSFTYCGIRDQV-FDIYSMDIDSG  163 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC---CSS-SSEEEEEECT-TSSEEEEEEEETTE-EEEEEEETTTC
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe---ecC-CCccceEECC-CCCEEEEEECCCCc-eEEEEEECCCC
Confidence            999 999999998  3455556555  44431 111   122 2588899999 787776 6667776 99998754443


Q ss_pred             CeeeecccccceeEEEEecCCCCeEEEe-cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          166 PVVELQRHQASVNAIAWAPHSSCHICTA-GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                      ....+..+...+.+++|+|++ ++|+.+ ..++.+++|++.......      ..+..|...+..++|+|+++++++++.
T Consensus       164 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV------ERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             CEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCE------EECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             cceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCc------EEEecCCcccCCeEECCCCCEEEEEEc
Confidence            466777788899999999999 466654 469999999987433222      355567788999999999998887766


Q ss_pred             C-----------CcEEEEEC
Q 035558          245 S-----------TKLQILRV  253 (253)
Q Consensus       245 ~-----------~~i~vw~l  253 (253)
                      +           ..+.+|++
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEET
T ss_pred             CCCCCcccccCceEEEEEec
Confidence            5           45888874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=3.7e-25  Score=177.88  Aligned_cols=205  Identities=10%  Similarity=0.139  Sum_probs=148.0

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee----------ee-----eeecccccEEEEEec-CCCeEE----EE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV----------DT-----QLIAHDKEVYDIAWG-GVGVFA----SV  102 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----------~~-----~~~~~~~~v~~~~~~-~~~~l~----~~  102 (253)
                      ..+..++++ +++.++++++.++ +++|+......          ..     ....+...|.+++|+ ++++|+    ++
T Consensus        37 ~~~n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            457889999 7888999998887 88987642110          00     011355679999999 999999    78


Q ss_pred             eCCCcEEEEEcCCC--------CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccc
Q 035558          103 SADGSVRVFDLRDK--------EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ  174 (253)
Q Consensus       103 ~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  174 (253)
                      +.|+.|++||+++.        +....+.....|...|.+++|+|.++.+|++++.|+. |++||+++... +.....|.
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~~~-~~~~~~~~  192 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTETVK-VCATLPST  192 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSSEE-EEEEECGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCCcc-eeeccCCC
Confidence            89999999999764        2222344445577799999999955899999999999 99999998643 55566788


Q ss_pred             cceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-EcCC------c
Q 035558          175 ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AFST------K  247 (253)
Q Consensus       175 ~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~------~  247 (253)
                      ..|.+++|+|++ ++|++|+.||+|++||++ +...............|...|.+++|++++.++++. ..++      .
T Consensus       193 ~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~  270 (434)
T 2oit_A          193 VAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD  270 (434)
T ss_dssp             GCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred             CceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence            999999999998 699999999999999998 321110000000111244589999999988655432 3332      2


Q ss_pred             EEEEEC
Q 035558          248 LQILRV  253 (253)
Q Consensus       248 i~vw~l  253 (253)
                      +++|++
T Consensus       271 v~i~~l  276 (434)
T 2oit_A          271 VVMALL  276 (434)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            778864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=8.6e-24  Score=160.94  Aligned_cols=223  Identities=9%  Similarity=0.064  Sum_probs=161.2

Q ss_pred             CCCceEEeecC-cEEEEEccC-CccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe--CCCeEEEE--eccCce
Q 035558            3 QKPDLLATSSD-FLRVWRISD-EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS--IDTTCTIW--DIEREA   76 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vw--d~~~~~   76 (253)
                      +++.+|+++++ .|++||+.+ +    +.......+..    ..+.+++|+ +++++|++++  .++...+|  +..+++
T Consensus        51 pdg~~l~~~~~~~i~~~d~~~~~----~~~~~~~~~~~----~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~~~~~  121 (297)
T 2ojh_A           51 PDGKYLLLNSEGLLYRLSLAGDP----SPEKVDTGFAT----ICNNDHGIS-PDGALYAISDKVEFGKSAIYLLPSTGGT  121 (297)
T ss_dssp             TTSSEEEEEETTEEEEEESSSCC----SCEECCCTTCC----CBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred             CCCCEEEEEcCCeEEEEeCCCCC----CceEecccccc----ccccceEEC-CCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence            45677777777 999999988 6    55555555531    578899999 8999999988  33445555  445444


Q ss_pred             eeeeeecccccEEEEEec-CCCeEE-EEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCC
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFA-SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSA  153 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~  153 (253)
                       ...+.. ...+..++|+ +++.++ ++..++.+++|+++.....  ......+...+.+++|+| +++.+++++. ++.
T Consensus       122 -~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~  196 (297)
T 2ojh_A          122 -PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV--ETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQ  196 (297)
T ss_dssp             -CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC--EEECCCSSSCEEEEEECT-TSSEEEEEECTTSS
T ss_pred             -eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc--ceEcccCCCccccceECC-CCCEEEEEecCCCC
Confidence             333433 3358899999 888776 7888999999997543211  122234455899999999 8888877764 666


Q ss_pred             eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCC-----------CcEEEEeccCCCCCCCCCCCCeeecc
Q 035558          154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD-----------SQALIWDLSSMGQPVEGGLDPILAYT  222 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~  222 (253)
                       +.+|++.........+..|...+..++|+|++ ++|++++.+           +.|.+||+.+++...     .....+
T Consensus       197 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----~~~~~~  269 (297)
T 2ojh_A          197 -MQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET-----LFDLFG  269 (297)
T ss_dssp             -CEEEEEETTSSCEEECCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE-----EEEEEE
T ss_pred             -ccEEEECCCCCCcEEEecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCcee-----eeccCC
Confidence             99998874444477788888889999999999 588777765           569999998765322     123346


Q ss_pred             CCCceeEEEEcCCCCceEEEEcCC
Q 035558          223 AGAEIEQLQWSSSQPDWVAIAFST  246 (253)
Q Consensus       223 ~~~~v~~~~~~~~~~~~~~~~~~~  246 (253)
                      |...+..++|+|+++.+++++.+.
T Consensus       270 ~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          270 GQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             STTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCcccccceECCCCCEEEEEEecc
Confidence            788999999999999888776654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.1e-22  Score=157.75  Aligned_cols=230  Identities=8%  Similarity=-0.015  Sum_probs=163.9

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCcee-e
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAV-D   78 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~-~   78 (253)
                      ..+.++++++.  .|++||+.++    +....+..+.     ..+ .++|+ ++++++++++. ++.|.+||+++++. .
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~-----~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~   76 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTL----EILNQITLGY-----DFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPKV   76 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTC----CEEEEEECCC-----CEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCEE
T ss_pred             CCCEEEEEecCCCeEEEEeCccc----ceeeeEEccC-----Ccc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCceeE
Confidence            44555666664  9999999886    6666665554     556 99999 78886665555 88999999999887 6


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCC---cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADG---SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      ..+..+..+..+++|+ ++++++++..++   .|.+||+.+++....+..    ......++|+| +++++++++.+...
T Consensus        77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~sp-dg~~l~~~~~~~~~  151 (331)
T 3u4y_A           77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAISP-NGNGLILIDRSSAN  151 (331)
T ss_dssp             EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEECT-TSSCEEEEEETTTT
T ss_pred             EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEECC-CCCEEEEEecCCCc
Confidence            6676666666669999 999888555553   899999998864443322    22568999999 88777777666555


Q ss_pred             -EEEEECCCCCCCe---eeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE
Q 035558          155 -VVVLDIRFPTLPV---VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL  230 (253)
Q Consensus       155 -i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  230 (253)
                       |.+|++.......   .........+..++|+|++..+++++..++.|++||+.+++...     ..........+..+
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-----~~~~~~~~~~~~~~  226 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-----LLNAVGTNNLPGTI  226 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-----EEEEEECSSCCCCE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-----eeeeccCCCCCceE
Confidence             9999998644311   11122345678999999994345566679999999998766411     01223345778899


Q ss_pred             EEcCCCCceEEEE-cCCcEEEEEC
Q 035558          231 QWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       231 ~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      +|+|+++++++++ .++.|.+|++
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEET
T ss_pred             EECCCCCEEEEEEcCCCEEEEEEC
Confidence            9999998666544 4677888874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.2e-22  Score=158.10  Aligned_cols=234  Identities=12%  Similarity=0.107  Sum_probs=152.8

Q ss_pred             CCc-eEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEecc---Cce
Q 035558            4 KPD-LLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIE---REA   76 (253)
Q Consensus         4 ~~~-~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~---~~~   76 (253)
                      +++ +++++.+  .|++|+++......+.+..+..+      ..+..++|+ ++++++++++ .++.|.+||+.   ..+
T Consensus        48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~  120 (343)
T 1ri6_A           48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP------GSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVG  120 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS------SCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             CCCEEEEeecCCCeEEEEEecCCCCceeeccccccC------CCCcEEEEc-CCCCEEEEEecCCCeEEEEECCCCcccc
Confidence            445 4444443  99999998211223344444443      357899999 7888776665 48899999994   344


Q ss_pred             eeeeeecccccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeee---ccCCCCCCeeEEEeeCCCCCEEEEEE-e
Q 035558           77 VDTQLIAHDKEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIY---ESSEPDTPLVRLGWNKQDPRYMATII-M  150 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~-~  150 (253)
                      ....+.. ...+.+++|+ +++.+++++ .++.|.+||+.+........   ........+..++|+| +++++++++ .
T Consensus       121 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~  198 (343)
T 1ri6_A          121 VVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNEL  198 (343)
T ss_dssp             EEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETT
T ss_pred             ccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCC
Confidence            4444443 3458899999 888777777 89999999998733222111   1112234788899999 888776666 4


Q ss_pred             CCCeEEEEECCCCCCCe---eeec---cc---ccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCCCeee
Q 035558          151 DSAKVVVLDIRFPTLPV---VELQ---RH---QASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~---~~~~---~~---~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                      ++. |.+||+.......   ..+.   ..   ...+..++|+|++. +|+ ++..++.|.+||+.......    .....
T Consensus       199 ~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~l~v~~~~~~~i~v~d~~~~~~~~----~~~~~  272 (343)
T 1ri6_A          199 NSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR-HLYACDRTASLITVFSVSEDGSVL----SKEGF  272 (343)
T ss_dssp             TTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCCE----EEEEE
T ss_pred             CCE-EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC-EEEEEecCCCEEEEEEEcCCCCce----EEeee
Confidence            555 9999996422111   1121   11   23566899999994 555 66689999999998422111    01122


Q ss_pred             ccCCCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILR  252 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~  252 (253)
                      ......+..++|+|+++.+++++ .++.+.+|+
T Consensus       273 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          273 QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             ecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            22223488999999999777776 579999995

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=1.7e-23  Score=168.19  Aligned_cols=157  Identities=15%  Similarity=0.212  Sum_probs=123.1

Q ss_pred             CCeeEEEecCCCCCEEE----EEeCCCeEEEEeccCc--------e---eeeeeecccccEEEEEec-C-CCeEEEEeCC
Q 035558           43 GPLTSFDWNEAEPRRIG----TSSIDTTCTIWDIERE--------A---VDTQLIAHDKEVYDIAWG-G-VGVFASVSAD  105 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~----~~~~dg~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d  105 (253)
                      ..|.+++|+ +++++|+    +|+.|+.|++||++++        +   ....+.+|...|.+++|+ + +.+|++++.|
T Consensus        93 ~~v~~l~~s-pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           93 FPIHHLALS-CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SCEEEEEEC-TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CcccEEEEc-CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            679999999 8899999    7888999999998765        2   134556799999999999 5 8899999999


Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc-------ccccee
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR-------HQASVN  178 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~i~  178 (253)
                      |+|++||++++..   ......+...|.+++|+| ++++|++++.|+. |++||.+ .. ....+..       |...+.
T Consensus       172 g~v~iwD~~~~~~---~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~-v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          172 GSIAVLQVTETVK---VCATLPSTVAVTSVCWSP-KGKQLAVGKQNGT-VVQYLPT-LQ-EKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             SCEEEEEESSSEE---EEEEECGGGCEEEEEECT-TSSCEEEEETTSC-EEEECTT-CC-EEEEECCCTTCCTTSCEEEE
T ss_pred             CeEEEEEcCCCcc---eeeccCCCCceeEEEEcC-CCCEEEEEcCCCc-EEEEccC-Cc-ccccccCCcccCCCCceeEE
Confidence            9999999998742   222234556899999999 8999999999998 9999998 22 2333332       334899


Q ss_pred             EEEEecCCCCeEEE-ecCCCc------EEEEeccCCC
Q 035558          179 AIAWAPHSSCHICT-AGDDSQ------ALIWDLSSMG  208 (253)
Q Consensus       179 ~~~~~~~~~~~l~~-~~~dg~------i~iwd~~~~~  208 (253)
                      +++|++++ .++++ ...||.      +++|++++..
T Consensus       245 ~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          245 DVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             EEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             EEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCC
Confidence            99999987 45543 334433      8999998753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.4e-22  Score=156.33  Aligned_cols=239  Identities=13%  Similarity=0.133  Sum_probs=155.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-CeEEEEecc--Cce-
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-TTCTIWDIE--REA-   76 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~--~~~-   76 (253)
                      ....++++++ + .|++|+++.. ...+....+ .+.     ..+.+++|+ +++++|++++.+ +.|++|++.  +++ 
T Consensus         3 ~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~-~~~-----~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~   74 (343)
T 1ri6_A            3 LKQTVYIASPESQQIHVWNLNHE-GALTLTQVV-DVP-----GQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGAL   74 (343)
T ss_dssp             CEEEEEEEEGGGTEEEEEEECTT-SCEEEEEEE-ECS-----SCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             ceEEEEEeCCCCCeEEEEEECCC-CcEEEeeeE-ecC-----CCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCce
Confidence            3444555544 5 9999999642 222333333 344     578899999 889988888876 899999997  444 


Q ss_pred             -eeeeeecccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-eCC
Q 035558           77 -VDTQLIAHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-MDS  152 (253)
Q Consensus        77 -~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~  152 (253)
                       .+..+..+. .+..++|+ +++.+++++. ++.|.+||+..+........... ...+.+++|+| +++++++++ .++
T Consensus        75 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~  151 (343)
T 1ri6_A           75 TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQD  151 (343)
T ss_dssp             EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGT
T ss_pred             eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCC
Confidence             334444333 78899999 8887766654 88999999953222222222222 23688999999 888888877 666


Q ss_pred             CeEEEEECCCCCCCee----eecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeee---ccCC
Q 035558          153 AKVVVLDIRFPTLPVV----ELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILA---YTAG  224 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~  224 (253)
                      . |.+||+.+......    .+.. ....+..++|+|++..+++++..++.|.+|++................   ....
T Consensus       152 ~-v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~  230 (343)
T 1ri6_A          152 R-ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT  230 (343)
T ss_dssp             E-EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred             E-EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence            6 99999986332111    2222 334788899999994244555689999999996422111000000000   0113


Q ss_pred             CceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          225 AEIEQLQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      ..+..++|+|+++++++++ .++.+.+|++
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~  260 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSV  260 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence            4677899999998777544 6889999974

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=5.4e-22  Score=155.07  Aligned_cols=235  Identities=10%  Similarity=0.062  Sum_probs=156.5

Q ss_pred             CCceEEeec---C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccC-c--
Q 035558            4 KPDLLATSS---D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIER-E--   75 (253)
Q Consensus         4 ~~~~l~~~~---~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~--   75 (253)
                      ++++++++.   + .|++|++..+  ..+.+..+..+.     ..+..++|+ +++++|++++ .++.|.+|++.. +  
T Consensus        50 dg~l~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~~~-----~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~  121 (347)
T 3hfq_A           50 KDCLYSVDKEDDEGGIAAWQIDGQ--TAHKLNTVVAPG-----TPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGAL  121 (347)
T ss_dssp             TCEEEEEEEETTEEEEEEEEEETT--EEEEEEEEEEES-----CCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred             CCeEEEEEecCCCceEEEEEecCC--cEEEeeeeecCC-----CCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence            455666654   3 9999999764  223444444455     678899999 8999888877 789999999963 2  


Q ss_pred             eeeeeeec---------ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec-cCCCCCCeeEEEeeCCCCCE
Q 035558           76 AVDTQLIA---------HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE-SSEPDTPLVRLGWNKQDPRY  144 (253)
Q Consensus        76 ~~~~~~~~---------~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~  144 (253)
                      +.+..+..         +...+.+++|+ +++++++...++.|.+||+........... .......+..++|+| ++++
T Consensus       122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~  200 (347)
T 3hfq_A          122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQY  200 (347)
T ss_dssp             EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSE
T ss_pred             eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCE
Confidence            22333321         11248899999 888777777789999999983332222221 112223678899999 8887


Q ss_pred             EEEEEeCCCeEEEEECCCCCCC---eeeecccc------cceeEEEEecCCCCeE-EEecCCCcEEEEeccCCCCCCCCC
Q 035558          145 MATIIMDSAKVVVLDIRFPTLP---VVELQRHQ------ASVNAIAWAPHSSCHI-CTAGDDSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~------~~i~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~  214 (253)
                      +++++..+..|.+|++......   +..+....      ..+..++|+|+| ++| ++...++.|.+|++.......   
T Consensus       201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g~~~---  276 (347)
T 3hfq_A          201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADGHLT---  276 (347)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGGCEE---
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCCcEE---
Confidence            7776655545999998752211   22222222      358889999999 566 566678999999997422111   


Q ss_pred             CCCeeeccCCCceeEEEEcCCCCceEEEEcC-CcEEEEE
Q 035558          215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAFS-TKLQILR  252 (253)
Q Consensus       215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~vw~  252 (253)
                       .......+...+..++|+|+++++++++.+ +.+.+|+
T Consensus       277 -~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          277 -LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA  314 (347)
T ss_dssp             -EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             -EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence             012333456678999999999977777654 8899995

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=4.1e-22  Score=154.64  Aligned_cols=238  Identities=10%  Similarity=0.051  Sum_probs=158.4

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccce-eeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---eEEEEeccCc
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVEL-KSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT---TCTIWDIERE   75 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~   75 (253)
                      |+...+++++. + .|.+||+.++    +. ...+..+.     .+..+++|+ +++++++++..++   .|.+||++++
T Consensus        49 ~dg~~l~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~-----~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           49 SDCSNVVVTSDFCQTLVQIETQLE----PPKVVAIQEGQ-----SSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             SSSCEEEEEESTTCEEEEEECSSS----SCEEEEEEECS-----SCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCC----ceeEEecccCC-----CCccceEEC-CCCCEEEEecCCCCcccEEEEECCCC
Confidence            44444555555 4 9999999886    54 55666665     555559999 8999888555553   8999999999


Q ss_pred             eeeeeeecccccEEEEEec-CCCeEE-EEeCCCc-EEEEEcCCCCCeeee-eccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           76 AVDTQLIAHDKEVYDIAWG-GVGVFA-SVSADGS-VRVFDLRDKEHSTII-YESSEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~dg~-i~i~d~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      +.+..+.. ...+.+++|+ ++++++ +...++. |.+|++......... ............++|+| +++++++++..
T Consensus       119 ~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~  196 (331)
T 3u4y_A          119 KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLI  196 (331)
T ss_dssp             EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETT
T ss_pred             CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCC
Confidence            88877764 3456899999 887555 4456688 999999865432111 11112233678999999 88877666654


Q ss_pred             CCeEEEEECCCCCCC--eeeecccccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCC--CCCCeeeccCCCc
Q 035558          152 SAKVVVLDIRFPTLP--VVELQRHQASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEG--GLDPILAYTAGAE  226 (253)
Q Consensus       152 ~~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~  226 (253)
                      +..|.+||+.+.+..  +..+.. ...+..++|+|++ ++|+ +...++.|.+||+.+++.....  .............
T Consensus       197 ~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
T 3u4y_A          197 GNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFG  274 (331)
T ss_dssp             TTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTT
T ss_pred             CCeEEEEECCCCcccceeeeccC-CCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccc
Confidence            444999999875530  444443 4667899999999 5555 4456889999999886531100  0000000011112


Q ss_pred             eeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          227 IEQLQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      ...++|+|+++++++++ .++.+.+|++
T Consensus       275 ~~~~~~spdg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          275 ANQMALNKTETKLFISANISRELKVFTI  302 (331)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ccceEECCCCCEEEEecCCCCcEEEEEe
Confidence            25689999999776555 4668999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=3e-22  Score=165.17  Aligned_cols=232  Identities=7%  Similarity=0.026  Sum_probs=164.9

Q ss_pred             CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEec--cCceeee
Q 035558            4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDI--EREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~   79 (253)
                      ++.+++++++  +|.+||..++    +++.++..+.     . +..++|+ +++++|++++.|+.|++||+  .+++.+.
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~----~~~~~i~~g~-----~-~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSK----KIVKVIDTGY-----A-VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTC----CEEEEEECST-----T-EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCEEEEEEcCCCeEEEEECCCc----eEEEEEecCc-----c-cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcEEE
Confidence            4567777764  9999999987    7788887544     3 7899999 89999999999999999999  8888888


Q ss_pred             eeecccccEEEEEec-----CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccC--------CCCCCeeEEEeeCCCCCEE
Q 035558           80 QLIAHDKEVYDIAWG-----GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESS--------EPDTPLVRLGWNKQDPRYM  145 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l  145 (253)
                      .+. +...+..++|+     +++++++++. +++|.+||..+.+....+....        .+...+..+.++|....++
T Consensus       217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            887 45567999998     5788888874 8999999999888665554311        1223788999999444445


Q ss_pred             EEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEE-EecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          146 ATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC-TAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       146 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      ++...++. |.+||..+.+........+...+..++|+|++ ++|+ ++..+++|.+||+.+++....   .+.....|.
T Consensus       296 vs~~~~g~-i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~~~---i~~g~~ph~  370 (543)
T 1nir_A          296 VNVKETGK-VLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLSAL---VDVGKTPHP  370 (543)
T ss_dssp             EEETTTTE-EEEEECTTSSSCEEEEEECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEE---EECSSSBCC
T ss_pred             EEECCCCe-EEEEEecCCCcceeEEeccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEEEe---eccCCCCCC
Confidence            55545555 99999987654222222356678899999999 5554 556789999999998763320   000011254


Q ss_pred             CceeEEEEcCCCCceE-EEE-cCCcEEEEEC
Q 035558          225 AEIEQLQWSSSQPDWV-AIA-FSTKLQILRV  253 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~-~~~-~~~~i~vw~l  253 (253)
                      .....+ ++|++..++ ++. .++.|.+|++
T Consensus       371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             TTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             CCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence            444444 467744444 443 5799999974

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=4.5e-22  Score=164.07  Aligned_cols=234  Identities=15%  Similarity=0.108  Sum_probs=167.5

Q ss_pred             CCceEEeec-C-cEEEEEc--cCCccccceeeeecCCCCccccCCeeEEEecCC----CCCEEEEEe-CCCeEEEEeccC
Q 035558            4 KPDLLATSS-D-FLRVWRI--SDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEA----EPRRIGTSS-IDTTCTIWDIER   74 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~-~dg~i~vwd~~~   74 (253)
                      ++++|++++ + .|++||+  .+.    +.+.++..+      ..+..++|+ +    +++++++++ .+++|.+||..+
T Consensus       189 dg~~l~v~~~d~~V~v~D~~~~t~----~~~~~i~~g------~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          189 SGRYLLVIGRDARIDMIDLWAKEP----TKVAEIKIG------IEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSC----EEEEEEECC------SEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CCCEEEEECCCCeEEEEECcCCCC----cEEEEEecC------CCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccc
Confidence            555555555 5 9999999  565    667777644      457899999 7    899998887 489999999999


Q ss_pred             ceeeeeeec----------cc-ccEEEEEec-C-CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC
Q 035558           75 EAVDTQLIA----------HD-KEVYDIAWG-G-VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD  141 (253)
Q Consensus        75 ~~~~~~~~~----------~~-~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  141 (253)
                      ++++..+..          |. ..+.++.++ + +.++++...++.|.+||+.+.+.......  .....+..+.|+| +
T Consensus       258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~sp-d  334 (543)
T 1nir_A          258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDS-S  334 (543)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECT-T
T ss_pred             cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECC-C
Confidence            998887764          22 268899999 4 45677778899999999988765442221  1234678899999 8


Q ss_pred             CCEEEEEEeCCCeEEEEECCCCCCCeeeecc----cccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCC
Q 035558          142 PRYMATIIMDSAKVVVLDIRFPTLPVVELQR----HQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLD  216 (253)
Q Consensus       142 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  216 (253)
                      ++++++++.....|.+||+.+++. +..+..    |.+....+ ++|++..+++++. .|++|.+||+.+...+......
T Consensus       335 g~~l~va~~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~  412 (543)
T 1nir_A          335 HRYFMTAANNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  412 (543)
T ss_dssp             SCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             CCEEEEEecCCCeEEEEECCCCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence            888777665433499999998653 555543    54333333 5787445777776 6899999999884322111112


Q ss_pred             CeeeccCCCceeEEEEcCCCCceEEEE-------cCCcEEEEEC
Q 035558          217 PILAYTAGAEIEQLQWSSSQPDWVAIA-------FSTKLQILRV  253 (253)
Q Consensus       217 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~i~vw~l  253 (253)
                      ...+..|...+..++++|+++++.+.+       .++.|.||++
T Consensus       413 v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          413 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             EEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             EEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence            245667888889999999999777665       2679999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=3.3e-21  Score=150.64  Aligned_cols=227  Identities=11%  Similarity=0.055  Sum_probs=163.3

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCcc----ccCCeeEEEecCCCCCEEEEEe--CCCeEEEEecc
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSE----YCGPLTSFDWNEAEPRRIGTSS--IDTTCTIWDIE   73 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~   73 (253)
                      |+...++++.. + .|.+||..++    +....+..+....    ....+.+++|+ ++++++++++  .++.|.+||.+
T Consensus        98 ~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A           98 NTTQTLWFGNTVNSAVTAIDAKTG----EVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTC----CEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT
T ss_pred             CCCCEEEEEecCCCEEEEEeCCCC----eeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC
Confidence            34444556655 3 9999999887    6666665543110    00126889999 7888777665  47899999999


Q ss_pred             CceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           74 REAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES-SEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        74 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      +++....+..+...+..++|+ +++.+++++.++.|.+||+.+++....+... ..+...+..++|+| +++.+++++.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~  251 (353)
T 3vgz_A          173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSK  251 (353)
T ss_dssp             TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESS
T ss_pred             CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCC
Confidence            999888777556668899999 9999999999999999999988754444331 22344678899999 88877777766


Q ss_pred             CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558          152 SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ  231 (253)
Q Consensus       152 ~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  231 (253)
                      +..|.+||..+.+. +..+....  ...++|+|++..++++...++.|.+||+.+++..        ........+.+++
T Consensus       252 ~~~v~~~d~~~~~~-~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--------~~~~~~~~~~~~~  320 (353)
T 3vgz_A          252 AAEVLVVDTRNGNI-LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV--------KTFDTPTHPNSLA  320 (353)
T ss_dssp             SSEEEEEETTTCCE-EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------EEEECCSEEEEEE
T ss_pred             CCEEEEEECCCCcE-EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE--------EEEecCCCCCeEE
Confidence            44599999987653 45554332  2579999999434556667999999999876532        2233455789999


Q ss_pred             EcCCCCceEEEEcC
Q 035558          232 WSSSQPDWVAIAFS  245 (253)
Q Consensus       232 ~~~~~~~~~~~~~~  245 (253)
                      |+|+++.++.+..+
T Consensus       321 ~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          321 LSADGKTLYVSVKQ  334 (353)
T ss_dssp             ECTTSCEEEEEEEC
T ss_pred             EcCCCCEEEEEEcc
Confidence            99999866655544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=2.4e-22  Score=171.89  Aligned_cols=229  Identities=14%  Similarity=0.136  Sum_probs=162.3

Q ss_pred             CCCceEEeecC--------cEEEEEccCCccccceeeeecCCCCc----------c-------c--cCCeeEEEecCCCC
Q 035558            3 QKPDLLATSSD--------FLRVWRISDEDRRVELKSLLNGNKNS----------E-------Y--CGPLTSFDWNEAEP   55 (253)
Q Consensus         3 ~~~~~l~~~~~--------~v~iw~~~~~~~~~~~~~~~~~~~~~----------~-------~--~~~v~~~~~~~~~~   55 (253)
                      ++|++|++++.        .|++||+.++    +....+..+...          .       .  ...|.+++|+ |++
T Consensus        46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S-pDg  120 (741)
T 2ecf_A           46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSG----QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS-PDA  120 (741)
T ss_dssp             TTSSEEEEEECCSSCTTEEEEEEEETTTC----CEEEEECGGGTC--------------------CCEESCCCEEC-TTS
T ss_pred             cCCCEEEEEeccCCCCcccEEEEEECCCC----ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC-CCC
Confidence            35666666542        6999999886    544455443310          0       0  0127899999 899


Q ss_pred             CEEEEEeCCCeEEEEeccCce--eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC--
Q 035558           56 RRIGTSSIDTTCTIWDIEREA--VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT--  130 (253)
Q Consensus        56 ~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--  130 (253)
                      ++|++++. +.|++||+.+++  ....+..|...+..++|+ +++.|++++ ++.|++||+.+++......   .+..  
T Consensus       121 ~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~---~~~~~~  195 (741)
T 2ecf_A          121 QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA---DGSTTI  195 (741)
T ss_dssp             SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC---CCCSSE
T ss_pred             CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc---CCccce
Confidence            99999886 899999999873  345566788889999999 999999887 4689999998875322211   1111  


Q ss_pred             --------------CeeEEEeeCCCCCEEEEEEeCCC--------------------------------eEEEEECCC-C
Q 035558          131 --------------PLVRLGWNKQDPRYMATIIMDSA--------------------------------KVVVLDIRF-P  163 (253)
Q Consensus       131 --------------~i~~~~~~~~~~~~l~~~~~~~~--------------------------------~i~~~d~~~-~  163 (253)
                                    .+..++|+| +++.|++++.++.                                .|.+||+.+ .
T Consensus       196 ~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          196 GNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                          147899999 9999998877651                                488999987 5


Q ss_pred             CCCeeeec--ccccceeEEEEecCCCCeEEEec-----CCCcEEEEeccCCCCCCCCCCCCeeeccCCC----ceeEEEE
Q 035558          164 TLPVVELQ--RHQASVNAIAWAPHSSCHICTAG-----DDSQALIWDLSSMGQPVEGGLDPILAYTAGA----EIEQLQW  232 (253)
Q Consensus       164 ~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~  232 (253)
                      +. .....  .|...+..++| |+| ++|++++     .+..|++||+.+++...       ....+..    .+..++|
T Consensus       275 ~~-~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          275 QT-QWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRV-------LAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             CC-EEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEE-------EEEEECSSCCCCCSCCEE
T ss_pred             ce-EEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEE-------EEEcCCCCcCCcCCceEE
Confidence            53 32222  47788999999 999 5777554     36789999998876332       2222222    4568999


Q ss_pred             cCCCCceEEEEcCCcEEEEE
Q 035558          233 SSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +|+++.+++++.++.++||.
T Consensus       345 spdg~~~~~~~~~g~~~l~~  364 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYR  364 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEE
T ss_pred             CCCCeEEEEecCCCccEEEE
Confidence            99999666777788788875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=4.3e-21  Score=149.99  Aligned_cols=214  Identities=9%  Similarity=0.077  Sum_probs=155.9

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeeeecccc------
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQLIAHDK------   86 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~------   86 (253)
                      .|.+||..++    +....+...      ..+..++|+ ++++++ ++...++.|.+||.++++.+..+..+..      
T Consensus        70 ~v~~~d~~~~----~~~~~~~~~------~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  138 (353)
T 3vgz_A           70 VVYRLDPVTL----EVTQAIHND------LKPFGATIN-NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEV  138 (353)
T ss_dssp             EEEEECTTTC----CEEEEEEES------SCCCSEEEE-TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSC
T ss_pred             cEEEEcCCCC----eEEEEEecC------CCcceEEEC-CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccccc
Confidence            7999999886    666666543      346789999 777754 5556679999999999988777765432      


Q ss_pred             ---cEEEEEec-CCCeEEEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           87 ---EVYDIAWG-GVGVFASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        87 ---~v~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                         .+.+++|+ +++.+++++  .++.|.+||..+.+....+.   .....+..++|+| +++.+++++.++. |.+||+
T Consensus       139 ~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~s~-dg~~l~~~~~~~~-i~~~d~  213 (353)
T 3vgz_A          139 RPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---NTGKMSTGLALDS-EGKRLYTTNADGE-LITIDT  213 (353)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC---CCCTTCCCCEEET-TTTEEEEECTTSE-EEEEET
T ss_pred             CCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec---CCCCccceEEECC-CCCEEEEEcCCCe-EEEEEC
Confidence               27889999 888777665  48899999999876433332   2233578899999 8898998888777 999999


Q ss_pred             CCCCCCeeeecc----cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCC
Q 035558          161 RFPTLPVVELQR----HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       161 ~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  236 (253)
                      .+.+. ...+..    +...+..++|+|++..++++...++.|.+||+.+++...       .... .. ...++|+|++
T Consensus       214 ~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-------~~~~-~~-~~~~~~s~dg  283 (353)
T 3vgz_A          214 ADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-------KVAA-PE-SLAVLFNPAR  283 (353)
T ss_dssp             TTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-------EEEC-SS-CCCEEEETTT
T ss_pred             CCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-------EEEc-CC-CceEEECCCC
Confidence            87653 444432    455688899999995344444556999999998876432       1111 12 2579999999


Q ss_pred             CceEEEE-cCCcEEEEEC
Q 035558          237 PDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~-~~~~i~vw~l  253 (253)
                      +.+++++ .++.|.+|++
T Consensus       284 ~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          284 NEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             TEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEEEC
Confidence            8666555 6899999984

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1.4e-21  Score=152.50  Aligned_cols=224  Identities=9%  Similarity=0.002  Sum_probs=158.9

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      +++.++++++ + .|++||+.++    +....+..+..    ..+..++|+ ++++.+ +++..++.|.+||+.+++...
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~----~~~~~~~~s-~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDK----FGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSC----CSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEECCCC----cEEEEEecCCC----CCCceeEEC-CCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            4566777766 4 9999999886    66666654421    256789999 788755 555678999999999988777


Q ss_pred             eeecc------cccEEEEEec-CCCeEEEEeCC------------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558           80 QLIAH------DKEVYDIAWG-GVGVFASVSAD------------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        80 ~~~~~------~~~v~~~~~~-~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      .+...      ...+..++|+ +++++++++.+            +.|.+||+.+++....+.....+ ..+.+++|+| 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-  157 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAAD-  157 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECT-
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECC-
Confidence            66532      2337889999 99999988865            89999999875432222222222 2688899999 


Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccc----------------------------------------------
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQ----------------------------------------------  174 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------------------------------------------  174 (253)
                      +++ ++++  ++. |.+||+.+.+. +..+..+.                                              
T Consensus       158 dg~-l~~~--~~~-i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          158 DGS-LYVA--GPD-IYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             TSC-EEEE--SSS-EEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             CCc-EEEc--cCc-EEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence            777 5554  344 99999987552 33322111                                              


Q ss_pred             ----------------------cceeEEEEec-CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEE
Q 035558          175 ----------------------ASVNAIAWAP-HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQ  231 (253)
Q Consensus       175 ----------------------~~i~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  231 (253)
                                            ..+..++|+| ++ ++++++  ++.|.+||+.+++..        ........+.+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~--------~~~~~~~~~~~~~  301 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLI--------KAANLDHTYYCVA  301 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEE--------EEEECSSCCCEEE
T ss_pred             eeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEE--------EEEcCCCCccceE
Confidence                                  1345677889 88 577777  899999999886532        2222344578999


Q ss_pred             EcCCCCceEEEEcCCcEEEEEC
Q 035558          232 WSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |+|+++.+++++.++.|++|++
T Consensus       302 ~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          302 FDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             ECSSSSCEEEESBSSEEEEEET
T ss_pred             ECCCCCEEEEecCCCeEEEEec
Confidence            9999988888888899999985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=4.6e-22  Score=169.65  Aligned_cols=227  Identities=11%  Similarity=0.099  Sum_probs=159.4

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---------CeEEEEec
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---------TTCTIWDI   72 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~   72 (253)
                      +++++++++.+ .|++||+.++    +....+..|....  ..|.+++|+ |++++|++++.+         +.|++||+
T Consensus        26 pdg~~~~~~~dg~i~~~d~~~g----~~~~~~~~~~~~~--~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i~~~d~   98 (723)
T 1xfd_A           26 SDTEFIYREQKGTVRLWNVETN----TSTVLIEGKKIES--LRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (723)
T ss_dssp             SSSCBCCCCSSSCEEEBCGGGC----CCEEEECTTTTTT--TTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             CCCcEEEEeCCCCEEEEECCCC----cEEEEeccccccc--cccceEEEC-CCCCEEEEEecCccceeecceeeEEEEEC
Confidence            35667777666 9999999987    6666666665100  148999999 899999999764         78889999


Q ss_pred             cCcee--eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC---------------CCCeeE
Q 035558           73 EREAV--DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP---------------DTPLVR  134 (253)
Q Consensus        73 ~~~~~--~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------------~~~i~~  134 (253)
                      .+++.  +.....|...+..++|+ +++.|++++. +.|++||+.+++...........               ...+..
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~  177 (723)
T 1xfd_A           99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (723)
T ss_dssp             SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             CCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence            98875  22222445558899999 9999999886 78999999987754433221110               013378


Q ss_pred             EEeeCCCCCEEEEEEeCC---------------------------------CeEEEEECCCCCCCeeeeccc------cc
Q 035558          135 LGWNKQDPRYMATIIMDS---------------------------------AKVVVLDIRFPTLPVVELQRH------QA  175 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~~~~---------------------------------~~i~~~d~~~~~~~~~~~~~~------~~  175 (253)
                      ++|+| +++.|++++.++                                 ..|++||+.+... ...+..+      ..
T Consensus       178 ~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          178 HWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSE
T ss_pred             EEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccc
Confidence            99999 999999887653                                 1499999987653 3444433      56


Q ss_pred             ceeEEEEecCCCCeEEEec----CCCcEEEEeccCCCCCCCCCCCCeeeccCCCce----eEEEEcCCCCceEE--EEcC
Q 035558          176 SVNAIAWAPHSSCHICTAG----DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI----EQLQWSSSQPDWVA--IAFS  245 (253)
Q Consensus       176 ~i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~--~~~~  245 (253)
                      .+..++|+||| ++|++.+    .+..|++||+.+++...      .....+...+    ..++|+|+|+.++.  ...+
T Consensus       256 ~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          256 YITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTK------KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             EEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEE------EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             eeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceE------EEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence            78999999999 5776654    34689999998876332      1112233443    37899999997774  3455


Q ss_pred             C
Q 035558          246 T  246 (253)
Q Consensus       246 ~  246 (253)
                      +
T Consensus       329 ~  329 (723)
T 1xfd_A          329 G  329 (723)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.6e-21  Score=151.36  Aligned_cols=228  Identities=11%  Similarity=0.004  Sum_probs=160.1

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe------------CCCeE
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS------------IDTTC   67 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------~dg~i   67 (253)
                      |+...+++++.+  .|.+||+.++    +....+.......+...+.+++|+ +++++++++.            .++.|
T Consensus        43 ~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i  117 (337)
T 1pby_B           43 PGGRIAYATVNKSESLVKIDLVTG----ETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRV  117 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTC----CEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCC----CeEeeEEcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceE
Confidence            444455566653  9999999886    555544422100011357789999 8898888886            57999


Q ss_pred             EEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           68 TIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        68 ~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                      .+||+.+++.+..+.. ...+.+++|+ ++++++++  ++.|.+||+.+++....+... ....   .+.|+| ++..++
T Consensus       118 ~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~s~-dg~~l~  189 (337)
T 1pby_B          118 ALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ-SWEA---ETYAQP-DVLAVW  189 (337)
T ss_dssp             EEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECST-TTTT---TTBCCC-BCCCCC
T ss_pred             EEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecc-ccCC---CceeCC-CccEEe
Confidence            9999998887776664 4567889999 88888887  688999999987643333221 1111   237788 666555


Q ss_pred             EEEeCCC-----------------------eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEe
Q 035558          147 TIIMDSA-----------------------KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD  203 (253)
Q Consensus       147 ~~~~~~~-----------------------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd  203 (253)
                      +.+..+.                       .|.+||+.+.+.....+..+...+.+++|+|++ ++++++  ++.|.+||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d  266 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFD  266 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEE
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEE
Confidence            4443332                       268999988653233444566678899999999 578777  79999999


Q ss_pred             ccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          204 LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +.+++..        ........+.+++|+|+++++++++.++.|++|++
T Consensus       267 ~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          267 LEKNASI--------KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             TTTTEEE--------EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             CCCCcCc--------ceecCCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            9876532        22233456789999999998888888999999985

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=1.4e-21  Score=167.08  Aligned_cols=228  Identities=13%  Similarity=0.098  Sum_probs=166.9

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccc--eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVE--LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      +++++|+++++ .|++||+.++    .  ....+..|.     ..+..++|+ |++++|+.++ ++.|++||+.+++...
T Consensus       118 pDg~~l~~~~~~~i~~~d~~~~----~~~~~~~l~~~~-----~~~~~~~~S-PDG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          118 PDAQRLLFPLGGELYLYDLKQE----GKAAVRQLTHGE-----GFATDAKLS-PKGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             TTSSEEEEEETTEEEEEESSSC----STTSCCBCCCSS-----SCEEEEEEC-TTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEeCCcEEEEECCCC----CcceEEEcccCC-----cccccccCC-CCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            46777777777 9999999874    2  455566676     789999999 8999999887 4699999999887665


Q ss_pred             eeeccccc----------------EEEEEec-CCCeEEEEeCCC---------------------------------cEE
Q 035558           80 QLIAHDKE----------------VYDIAWG-GVGVFASVSADG---------------------------------SVR  109 (253)
Q Consensus        80 ~~~~~~~~----------------v~~~~~~-~~~~l~~~~~dg---------------------------------~i~  109 (253)
                      ....+...                +..++|+ +++.|++++.|+                                 .|.
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            44433332                4779999 999999988776                                 789


Q ss_pred             EEEcCC-CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC----CCeEEEEECCCCCCCeeeeccccc----ceeEE
Q 035558          110 VFDLRD-KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD----SAKVVVLDIRFPTLPVVELQRHQA----SVNAI  180 (253)
Q Consensus       110 i~d~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~----~i~~~  180 (253)
                      +||+.+ ++.... .....+...+..++| | +++.|++++.+    ...|++||+.+++. ...+..+..    .+..+
T Consensus       267 ~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~  342 (741)
T 2ecf_A          267 VISPAEQAQTQWI-DLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSL  342 (741)
T ss_dssp             EECSSTTCCCEEE-CCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCC
T ss_pred             EEECCCCCceEEe-cCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCce
Confidence            999988 764322 222234558899999 9 89988877652    22499999988653 444444432    45689


Q ss_pred             EEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE-EEcCCCCceEEEEcC-C--cEEEEEC
Q 035558          181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL-QWSSSQPDWVAIAFS-T--KLQILRV  253 (253)
Q Consensus       181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~-~--~i~vw~l  253 (253)
                      +|+|+| +++++++.||.++||.+......       ..+..+...+..+ .|+|+++.++..+.+ +  .+++|++
T Consensus       343 ~~spdg-~~~~~~~~~g~~~l~~~~~~~~~-------~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          343 RFLDDG-SILWSSERTGFQHLYRIDSKGKA-------AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             EECTTS-CEEEEECTTSSCEEEEECSSSCE-------EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             EECCCC-eEEEEecCCCccEEEEEcCCCCe-------eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence            999999 58999999998888887632222       3555677788887 599999877655544 3  7889863

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1e-20  Score=161.08  Aligned_cols=236  Identities=11%  Similarity=0.112  Sum_probs=162.5

Q ss_pred             CCCceEEeecC-cEEEEEccC-----CccccceeeeecCCCCcc---------ccCCeeEEEecCCCCCEEEEEe-----
Q 035558            3 QKPDLLATSSD-FLRVWRISD-----EDRRVELKSLLNGNKNSE---------YCGPLTSFDWNEAEPRRIGTSS-----   62 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~-----~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~-----   62 (253)
                      ++++.|+.+.+ .|++|++.+     +    +.......+....         ....+.+++|+ |++++|++++     
T Consensus       130 pdG~~la~~~~~~i~v~~~~~~~~~~g----~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~  204 (706)
T 2z3z_A          130 PVGDRVAYVRNHNLYIARGGKLGEGMS----RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSM  204 (706)
T ss_dssp             TTSSEEEEEETTEEEEEECBCTTSCCC----CCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTT
T ss_pred             CCCCEEEEEECCeEEEEecCcccccCC----CcEEeccCCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCC
Confidence            35667777777 999999987     5    4444333333100         00225899999 8999999887     


Q ss_pred             ----------------------------CCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCC-----
Q 035558           63 ----------------------------IDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADG-----  106 (253)
Q Consensus        63 ----------------------------~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg-----  106 (253)
                                                  .+..|++||+.+++......  .|...+.+++|+ +++.|++++.++     
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  284 (706)
T 2z3z_A          205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC  284 (706)
T ss_dssp             SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred             CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence                                        44689999999887554332  466789999999 999999888775     


Q ss_pred             cEEEEEcCCCCCeeeeeccC--CCCCCeeEEEeeC-CCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeE-EEE
Q 035558          107 SVRVFDLRDKEHSTIIYESS--EPDTPLVRLGWNK-QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNA-IAW  182 (253)
Q Consensus       107 ~i~i~d~~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~-~~~  182 (253)
                      .|++||+.+++....+....  .....+..++|+| .+++++++++.++. +++|++......+..+..+...+.. ++|
T Consensus       285 ~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~~~~~v~~~~~~  363 (706)
T 2z3z_A          285 KVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTKGEWEVTNFAGF  363 (706)
T ss_dssp             EEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred             EEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence            89999999884333333211  1112346789998 25668888877877 8888876333346677777777876 799


Q ss_pred             ecCCCCeEEEecCCC----cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC----CcEEEEEC
Q 035558          183 APHSSCHICTAGDDS----QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS----TKLQILRV  253 (253)
Q Consensus       183 ~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~vw~l  253 (253)
                      +|++..++++++.++    .|..||+.++..         ....+...+.+++|+|++++++..+.+    ..+.+|++
T Consensus       364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~---------~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          364 DPKGTRLYFESTEASPLERHFYCIDIKGGKT---------KDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             CTTSSEEEEEESSSCTTCBEEEEEETTCCCC---------EESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             cCCCCEEEEEecCCCCceEEEEEEEcCCCCc---------eeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            999953445555555    566666655431         233366779999999999977765444    45888874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1.9e-21  Score=165.57  Aligned_cols=223  Identities=11%  Similarity=0.120  Sum_probs=158.1

Q ss_pred             CCCCCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC-----c
Q 035558            1 ECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-----E   75 (253)
Q Consensus         1 sp~~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~   75 (253)
                      ||+ +.++++.+..|++||+.++    +.. .+..+.     ..+.+++|+ |+++.|+.+ .++.|++||+.+     +
T Consensus        90 spd-~~~~~~~~~~i~~~d~~~~----~~~-~l~~~~-----~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           90 AGR-GLVVLFTQGGLVGFDMLAR----KVT-YLFDTN-----EETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             TTT-TEEEEEETTEEEEEETTTT----EEE-EEECCT-----TCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             CCC-CeEEEEECCEEEEEECCCC----ceE-EccCCc-----ccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            455 5555554349999999885    433 334444     578899999 899999885 679999999998     7


Q ss_pred             eeeeeeeccccc--------------EEEEEec-CCCeEEEEe---------------------------------CCCc
Q 035558           76 AVDTQLIAHDKE--------------VYDIAWG-GVGVFASVS---------------------------------ADGS  107 (253)
Q Consensus        76 ~~~~~~~~~~~~--------------v~~~~~~-~~~~l~~~~---------------------------------~dg~  107 (253)
                      +.......+...              +.+++|+ +++.|++++                                 .+..
T Consensus       157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            665544433332              4889999 999999987                                 4567


Q ss_pred             EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCCCeeeec--cccc---cee
Q 035558          108 VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTLPVVELQ--RHQA---SVN  178 (253)
Q Consensus       108 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~--~~~~---~i~  178 (253)
                      |++||+.+++.... .....+...+.+++|+| +++.|++++.+.    ..|++||+.++.. ...+.  .+..   .+.
T Consensus       237 l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          237 VGIYHLATGKTVYL-QTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEETTTTEEEEC-CCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCCS
T ss_pred             EEEEECCCCceEee-ccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECccC
Confidence            99999988763222 22223455789999999 999999887765    2499999988632 22222  1221   246


Q ss_pred             EEEEec--CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE-EEEcCCCCceEEEEcCC
Q 035558          179 AIAWAP--HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ-LQWSSSQPDWVAIAFST  246 (253)
Q Consensus       179 ~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~  246 (253)
                      .++|+|  ++ +++++++.|+.+++|++.......      ..+..+...+.. ++|+|+++.++.++.++
T Consensus       314 ~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~------~~l~~~~~~v~~~~~~spdg~~l~~~~~~~  377 (706)
T 2z3z_A          314 PLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLI------RQVTKGEWEVTNFAGFDPKGTRLYFESTEA  377 (706)
T ss_dssp             CCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEE------EECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred             CceeecCCCC-EEEEEEccCCccEEEEEECCCCEE------EecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence            789999  98 699999999999999887322211      244556677776 79999998777665543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=3.8e-21  Score=170.07  Aligned_cols=227  Identities=10%  Similarity=0.045  Sum_probs=171.5

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCc------cccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNS------EYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE   75 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   75 (253)
                      +++..|+.+.+ .|++|++..     ..+..+.++...      .+...+.+++|+||+++.|++++ ++.|++|++..+
T Consensus       254 pDG~~la~~~~~~i~~~d~~~-----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~  327 (1045)
T 1k32_A          254 TDGRRILFSKGGSIYIFNPDT-----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT  327 (1045)
T ss_dssp             ESSSCEEEEETTEEEEECTTT-----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred             CCCCEEEEEeCCEEEEecCCc-----eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence            35667777777 999999844     223344442100      01146889999955788888887 789999999877


Q ss_pred             eeeeeeecccc-cEEEEEecCCCeEEEEeCCCcEE-EEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           76 AVDTQLIAHDK-EVYDIAWGGVGVFASVSADGSVR-VFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        76 ~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      +... +..|.. .+..++|++++.+++++.++.+. +||+.+++... +   ..+...+..++|+| +++.|++++.++.
T Consensus       328 ~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~-l---~~~~~~~~~~~~Sp-DG~~la~~~~~~~  401 (1045)
T 1k32_A          328 YVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F---EENLGNVFAMGVDR-NGKFAVVANDRFE  401 (1045)
T ss_dssp             BEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C---CCCCCSEEEEEECT-TSSEEEEEETTSE
T ss_pred             ceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE-e---cCCccceeeeEECC-CCCEEEEECCCCe
Confidence            6443 555666 88999998667888888888888 99998765322 1   14556899999999 9999999998887


Q ss_pred             eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCC----------CcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558          154 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD----------SQALIWDLSSMGQPVEGGLDPILAYTA  223 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (253)
                       |++||+.+++. ......|...+.+++|+|+| ++|++++.+          +.|++||+.++. .       ..+..|
T Consensus       402 -v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~-------~~l~~~  470 (1045)
T 1k32_A          402 -IMTVDLETGKP-TVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-I-------FAATTE  470 (1045)
T ss_dssp             -EEEEETTTCCE-EEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-E-------EECSCS
T ss_pred             -EEEEECCCCce-EEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-E-------EEeeCC
Confidence             99999987653 45555788899999999999 688877654          499999998764 2       356677


Q ss_pred             CCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          224 GAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ...+..++|+|+|+.++..+.++...+|+
T Consensus       471 ~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          471 NSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             SSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             CcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            88899999999999888888877766664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=1.2e-20  Score=157.28  Aligned_cols=218  Identities=8%  Similarity=0.008  Sum_probs=150.6

Q ss_pred             CCCceEEeec--C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---CCeEEEEeccC--
Q 035558            3 QKPDLLATSS--D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---DTTCTIWDIER--   74 (253)
Q Consensus         3 ~~~~~l~~~~--~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~--   74 (253)
                      +||+.||.++  + +++||+++.+    +..+....+.     ..+..++|+ |+ +++++++.   +...++|.+..  
T Consensus        31 ~DG~~la~~s~~~g~~~lw~~~~g----~~~~lt~~~~-----~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           31 VDGDKLLVVGFSEGSVNAYLYDGG----ETVKLNREPI-----NSVLDPHYG-VG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEETT----EEEECCSSCC-----SEECEECTT-CS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             CCCCeEEEEEccCCceeEEEEcCC----CcEeeecccc-----cccccccCC-CC-eEEEEeccCCCCcceEEEEEeccC
Confidence            4677777665  4 9999999765    4433333333     478899999 77 77777765   45556655433  


Q ss_pred             -ceeeeeeecccccEEEEEec-CCC--eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           75 -EAVDTQLIAHDKEVYDIAWG-GVG--VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        75 -~~~~~~~~~~~~~v~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                       +... .+.... .+...+|+ +++  .+++++. +.+.+||+.+++...... ..    . .+++|+| +++.|++++.
T Consensus       100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~-~~----~-~~~~~sp-DG~~la~~~~  169 (582)
T 3o4h_A          100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELAR-LP----G-FGFVSDI-RGDLIAGLGF  169 (582)
T ss_dssp             TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEE-ES----S-CEEEEEE-ETTEEEEEEE
T ss_pred             CCccc-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeec-CC----C-ceEEECC-CCCEEEEEEE
Confidence             2222 232221 23345666 554  4444444 455599998876433322 11    1 7899999 9999998877


Q ss_pred             C----CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCC--cEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          151 D----SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDS--QALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       151 ~----~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      +    .. |++||+.+++  ...+..|...+..++|+||| +.|+++..++  .|++||+.+++.        ....+|.
T Consensus       170 ~~~~~~~-i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~  237 (582)
T 3o4h_A          170 FGGGRVS-LFTSNLSSGG--LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV--------EDLELPS  237 (582)
T ss_dssp             EETTEEE-EEEEETTTCC--CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE--------EECCCSC
T ss_pred             cCCCCeE-EEEEcCCCCC--ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE--------EEccCCC
Confidence            6    44 9999998765  45777888889999999999 6888888888  899999987652        2344566


Q ss_pred             CceeEEE--------EcCCCCceEEEEcCCcEEEEEC
Q 035558          225 AEIEQLQ--------WSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       225 ~~v~~~~--------~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..+..++        |+|+|..+++++.++.+++|++
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            6666677        9999976668888999999975

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=1.3e-19  Score=141.51  Aligned_cols=227  Identities=11%  Similarity=0.053  Sum_probs=145.2

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---CCeEEEEeccCce--eeeeeecccccE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---DTTCTIWDIEREA--VDTQLIAHDKEV   88 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~--~~~~~~~~~~~v   88 (253)
                      .|.+|.++........+... .+.     ..+..++|+ ++++ |++++.   ++.|++|++.+++  .+..+..+...+
T Consensus        17 ~i~v~~~d~~tg~~~~~~~~-~~~-----~~p~~~a~s-pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p   88 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTNDGLL-AAT-----QNPTYLALS-AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP   88 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-EEC-----SCCCCEEEC-TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred             CEEEEEEcCCCCeEEEeeee-ecc-----CCcceEEEc-cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence            68888776531222222222 233     456789999 7888 555543   6899999997765  444445567788


Q ss_pred             EEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccCC---------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           89 YDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESSE---------PDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        89 ~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ..++|+ ++++|++++ .++.|.+||+........+.....         ....+.+++|+| +++++++...++. |.+
T Consensus        89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~-v~~  166 (347)
T 3hfq_A           89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDK-VYV  166 (347)
T ss_dssp             SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTE-EEE
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCE-EEE
Confidence            999999 999888887 789999999964332222222111         112488899999 7774444444555 999


Q ss_pred             EECCCCCCC--eeeecc-cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc------CCCcee
Q 035558          158 LDIRFPTLP--VVELQR-HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT------AGAEIE  228 (253)
Q Consensus       158 ~d~~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~  228 (253)
                      ||+......  ...+.. ....+..++|+|+|..+++++..++.|.+|++.......   ........      ....+.
T Consensus       167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~  243 (347)
T 3hfq_A          167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF---TQLGIVKTIPADYTAHNGAA  243 (347)
T ss_dssp             EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE---EEEEEEESSCTTCCSCCEEE
T ss_pred             EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce---EEeeeeeecCCCCCCCCcce
Confidence            999833321  111222 223577899999994244556788999999988522111   00001111      125688


Q ss_pred             EEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          229 QLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       229 ~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      .++|+|++++++ +...++.|.+|++
T Consensus       244 ~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          244 AIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            999999999775 5556889999974

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=8.8e-19  Score=137.58  Aligned_cols=225  Identities=9%  Similarity=0.068  Sum_probs=143.3

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccCceeeeeee---c------
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIEREAVDTQLI---A------   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~---~------   83 (253)
                      .|.+|+++......+.+.....+.     .....+++   ++++|++++ .++.|.+|++.....+..+.   .      
T Consensus        76 ~v~~~~~~~~~g~~~~~~~~~~~~-----~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~  147 (361)
T 3scy_A           76 AVSAFAFDKEKGTLHLLNTQKTMG-----ADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP  147 (361)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSS-----SCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred             cEEEEEEeCCCCcEEEeeEeccCC-----CCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence            899999876312233444444343     45666776   577666665 67899999997543222111   1      


Q ss_pred             -----ccccEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCC------eee----eeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           84 -----HDKEVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEH------STI----IYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        84 -----~~~~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~------~~~----~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                           +...+.+++|+ +++++++++ .++.|.+|++.....      ...    .............++|+| ++++++
T Consensus       148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~  226 (361)
T 3scy_A          148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAY  226 (361)
T ss_dssp             CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEE
T ss_pred             CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEE
Confidence                 12345889999 888665554 588999999986542      111    111122334678999999 898888


Q ss_pred             EEEeCCCeEEEEECCCCCC-Ceeee---cccccceeEEEEecCCCCeEEEecC--CCcEEEEeccCCCCCCCCCCCCeee
Q 035558          147 TIIMDSAKVVVLDIRFPTL-PVVEL---QRHQASVNAIAWAPHSSCHICTAGD--DSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~~~-~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                      +++..+..|.+||+.+... .+..+   ..+......++|+|++ ++|+++..  ++.|.+|++.......    .....
T Consensus       227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~----~~~~~  301 (361)
T 3scy_A          227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTL----TKVGY  301 (361)
T ss_dssp             EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCE----EEEEE
T ss_pred             EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcE----EEeeE
Confidence            8775444499999985431 12222   2233456799999999 57765554  5899999996322111    00111


Q ss_pred             ccCCCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILR  252 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~  252 (253)
                      ......+..++|+|+++++++++ .++.+.+|+
T Consensus       302 ~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          302 QLTGIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             EECSSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             ecCCCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence            22256788999999999777776 678899975

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1.2e-18  Score=136.89  Aligned_cols=227  Identities=7%  Similarity=-0.013  Sum_probs=147.9

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC----CeEEEEeccC--ce--eeeeeeccc
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID----TTCTIWDIER--EA--VDTQLIAHD   85 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~--~~--~~~~~~~~~   85 (253)
                      .|.+|.++......+.....  +.     ..+..++|+ +++++|++++.+    +.|.+|++..  ++  .+.....+.
T Consensus        28 ~i~~~~~d~~~g~~~~~~~~--~~-----~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~   99 (361)
T 3scy_A           28 GIYTFRFNEETGESLPLSDA--EV-----ANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG   99 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEE--EC-----SCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             CEEEEEEeCCCCCEEEeecc--cC-----CCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence            79999886532333333333  44     567789999 899999988875    7999999875  33  333334445


Q ss_pred             ccEEEEEecCCCeEEEEe-CCCcEEEEEcCCCCCeeeee---ccC--------CCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           86 KEVYDIAWGGVGVFASVS-ADGSVRVFDLRDKEHSTIIY---ESS--------EPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        86 ~~v~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~--------~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      ..+..+++ +++.+++++ .++.|.+|++..........   ...        .....+.+++|+| +++++++++....
T Consensus       100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTT
T ss_pred             CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCC
Confidence            56777777 777777666 68899999997654222111   111        1122457899999 8887777665444


Q ss_pred             eEEEEECCCCCC------Ce------eeecccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeee
Q 035558          154 KVVVLDIRFPTL------PV------VELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILA  220 (253)
Q Consensus       154 ~i~~~d~~~~~~------~~------~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~  220 (253)
                      .|.+|++.....      ..      .....+...+..++|+|++ +++++++ .++.|.+|++.++.....  ......
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~--~~~~~~  254 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEI--QTVAAD  254 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEE--EEEESC
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEe--EEEecC
Confidence            499999875442      11      1122234567899999999 5666555 799999999985532110  000111


Q ss_pred             ccCCCceeEEEEcCCCCceEEEEcC--CcEEEEEC
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIAFS--TKLQILRV  253 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~vw~l  253 (253)
                      ..+...+..++|+|++++++++..+  +.+.+|++
T Consensus       255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            2234557899999999977666654  78999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=8.8e-20  Score=155.61  Aligned_cols=232  Identities=8%  Similarity=0.053  Sum_probs=151.8

Q ss_pred             CCCceEEeec----------C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEe
Q 035558            3 QKPDLLATSS----------D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWD   71 (253)
Q Consensus         3 ~~~~~l~~~~----------~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd   71 (253)
                      +++++|++++          + .+++||+.++ . .+.+....+|.     ..+..++|+ |+++.|+.++. +.|++||
T Consensus        70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~~-----~~~~~~~~S-PdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-D-PQSLDPPEVSN-----AKLQYAGWG-PKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             TTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-C-CEECCCTTCCS-----CCCSBCCBC-SSTTCEEEEET-TEEEEES
T ss_pred             CCCCEEEEEecCccceeecceeeEEEEECCCC-c-eEeccCCcccc-----ccccccEEC-CCCCEEEEEEC-CeEEEEE
Confidence            3566666654          1 5779999885 1 11222223343     458899999 89999999886 7999999


Q ss_pred             ccCceeeeeeecccccE------------------EEEEec-CCCeEEEEeCCC--------------------------
Q 035558           72 IEREAVDTQLIAHDKEV------------------YDIAWG-GVGVFASVSADG--------------------------  106 (253)
Q Consensus        72 ~~~~~~~~~~~~~~~~v------------------~~~~~~-~~~~l~~~~~dg--------------------------  106 (253)
                      +.+++.......+...+                  .+++|+ +++.|++++.|+                          
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            99887665554433333                  789999 999999987653                          


Q ss_pred             --------cEEEEEcCCCCCeeeeecc---CCCCCCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCCCCeeeecc
Q 035558          107 --------SVRVFDLRDKEHSTIIYES---SEPDTPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPTLPVVELQR  172 (253)
Q Consensus       107 --------~i~i~d~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~  172 (253)
                              .|++||+.+++....+...   ..+...+..++|+| +++++++....+   ..|++||+.+++. ...+..
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~  298 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVC-TKKHED  298 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEe
Confidence                    7999999887643333211   01244788999999 888887765432   2499999987653 333322


Q ss_pred             -cccce----eEEEEecCCCCeEEE--ecCCC------cEEEEeccCCCC---CCCCCCCCeeeccCCCceeE-EEEcCC
Q 035558          173 -HQASV----NAIAWAPHSSCHICT--AGDDS------QALIWDLSSMGQ---PVEGGLDPILAYTAGAEIEQ-LQWSSS  235 (253)
Q Consensus       173 -~~~~i----~~~~~~~~~~~~l~~--~~~dg------~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~v~~-~~~~~~  235 (253)
                       +...+    ..++|+|+|. .|+.  +..++      .|.+||+.....   ..       .+..+...+.. ++|+|+
T Consensus       299 ~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-------~l~~~~~~~~~~~~~spd  370 (723)
T 1xfd_A          299 ESEAWLHRQNEEPVFSKDGR-KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ-------SITSGDWDVTKILAYDEK  370 (723)
T ss_dssp             ECSSCCCCCCCCCEECTTSC-SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC-------BSCCSSSCEEEEEEEETT
T ss_pred             ccCCEEeccCCCceEcCCCC-eEEEEEecccCCCcceeEEEEEeccCCCCcccee-------EeecCCeEEEeeeEEcCC
Confidence             33333    3789999995 5553  55677      566677323222   21       22223334444 699999


Q ss_pred             CCceEEEEcC---CcEEEEEC
Q 035558          236 QPDWVAIAFS---TKLQILRV  253 (253)
Q Consensus       236 ~~~~~~~~~~---~~i~vw~l  253 (253)
                      ++.++..+.+   +.+++|++
T Consensus       371 g~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          371 GNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             TTEEEEEESSSCTTCCEEEEE
T ss_pred             CCEEEEEEcCCCCcceEEEEE
Confidence            9988766555   67888874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1e-20  Score=161.40  Aligned_cols=227  Identities=12%  Similarity=0.166  Sum_probs=157.5

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---------CCeEEEEecc
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---------DTTCTIWDIE   73 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~   73 (253)
                      ++.+++++.+ .|++||+.++    +....+.+|....  ..+.+++|+ |++++|+.++.         ++.|++||+.
T Consensus        26 dg~~~~~~~d~~i~~~~~~~g----~~~~~~~~~~~~~--~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           26 GQEYLHQSADNNIVLYNIETG----QSYTILSNRTMKS--VNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             SSEEEEECTTSCEEEEESSSC----CEEEEECHHHHHT--TTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             CCeEEEEcCCCCEEEEEcCCC----cEEEEEccccccc--cceeeEEEC-CCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            4577777777 9999999987    5556665554100  148899999 89999998876         6899999999


Q ss_pred             Cceee--eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCC-----------------Cee
Q 035558           74 REAVD--TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-----------------PLV  133 (253)
Q Consensus        74 ~~~~~--~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----------------~i~  133 (253)
                      +++.+  ..+   ...+..++|+ +++.|+++. ++.|++||+.+++.......  .+..                 ...
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN--GRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC--CBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC--CCcCCeEcccccceeeeecccCcc
Confidence            88763  222   2568889999 999999886 78999999988765332211  1111                 225


Q ss_pred             EEEeeCCCCCEEEEEEeCCC---------------------------------eEEEEECCCCCC----Ce---eeeccc
Q 035558          134 RLGWNKQDPRYMATIIMDSA---------------------------------KVVVLDIRFPTL----PV---VELQRH  173 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~~---------------------------------~i~~~d~~~~~~----~~---~~~~~~  173 (253)
                      .++|+| +++.|++++.+..                                 .|++||+.+...    .+   ..+..|
T Consensus       173 ~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          173 ALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             cEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            899999 9999999886531                                 488999986542    01   123457


Q ss_pred             ccceeEEEEecCCCCeEEEecCC----CcEEEEe----ccCCCCCCCCCCCCeee---ccCCCcee-----EEEEcCCCC
Q 035558          174 QASVNAIAWAPHSSCHICTAGDD----SQALIWD----LSSMGQPVEGGLDPILA---YTAGAEIE-----QLQWSSSQP  237 (253)
Q Consensus       174 ~~~i~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~---~~~~~~v~-----~~~~~~~~~  237 (253)
                      ...+..++|+||+ +++++....    ..|.+||    +.+++...      ...   .+|...+.     .++|+|+|+
T Consensus       252 ~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~spdg~  324 (719)
T 1z68_A          252 DYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPK------TQEHIEESRTGWAGGFFVSTPVFSYDAI  324 (719)
T ss_dssp             CEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCG------GGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             cceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEE------EEecccccCCceEccccCCccEECCCCC
Confidence            8889999999997 677764422    3488888    66554322      111   35666666     889999998


Q ss_pred             ceEE--EEcCCcEEEE
Q 035558          238 DWVA--IAFSTKLQIL  251 (253)
Q Consensus       238 ~~~~--~~~~~~i~vw  251 (253)
                      .++.  ...++..+||
T Consensus       325 ~l~~~~~~~~g~~~l~  340 (719)
T 1z68_A          325 SYYKIFSDKDGYKHIH  340 (719)
T ss_dssp             CEEEEEECTTSCEEEE
T ss_pred             eEEEEEEccCCceEEE
Confidence            6653  3345544444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=9.8e-20  Score=141.21  Aligned_cols=220  Identities=11%  Similarity=0.050  Sum_probs=153.7

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccC-CeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeee
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCG-PLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +++++++ + .|++||+.++    +....+.....    . .+..++|+ ++++.+ +++..++.|.+||+.+++.+..+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~----~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~   72 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM----AVDKVITIADA----GPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRI   72 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT----EEEEEEECTTC----TTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCC----cEEEEEEcCCC----CCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeE
Confidence            4566665 4 9999999886    66666553220    1 47789999 777655 56666889999999998877666


Q ss_pred             ec-c----cccEEEEEec-CCCeEEEEe------------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558           82 IA-H----DKEVYDIAWG-GVGVFASVS------------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR  143 (253)
Q Consensus        82 ~~-~----~~~v~~~~~~-~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  143 (253)
                      .. +    ...+..++|+ +++.++++.            .++.|.+||+.+++....+..    ...+..++|+| +++
T Consensus        73 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~  147 (337)
T 1pby_B           73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWAR-DGS  147 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECT-TSS
T ss_pred             EcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC----CCCcceeEECC-CCC
Confidence            52 1    2257789999 898888886            579999999988764333322    23577899999 888


Q ss_pred             EEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCC-----------------------cE
Q 035558          144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDS-----------------------QA  199 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg-----------------------~i  199 (253)
                      +++++  ++. |.+||+.+.+. ...+..+.. ...+.|+|++. .++..+ .++                       .|
T Consensus       148 ~l~~~--~~~-i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          148 KLYGL--GRD-LHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVL-AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             CEEEE--SSS-EEEEETTTTEE-EEEECSTTT-TTTTBCCCBCC-CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             EEEEe--CCe-EEEEECCCCcE-eeeeecccc-CCCceeCCCcc-EEeeeccCCCceeeeeeccccccccccccccccce
Confidence            77777  566 99999987653 444443321 11237899984 444433 333                       36


Q ss_pred             EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          200 LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .+||+.+++...      .....+...+.+++|+|++++++++  ++.|.+|++
T Consensus       222 ~~~d~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~  267 (337)
T 1pby_B          222 LTMDLETGEMAM------REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             EEEETTTCCEEE------EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             EEEeCCCCCceE------eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence            899998765321      2344566778899999999876666  789999975

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=3.5e-19  Score=140.18  Aligned_cols=235  Identities=7%  Similarity=0.020  Sum_probs=150.6

Q ss_pred             CCCceEEeecC-cEEEEEcc-CCccccceeeeecCCCCccccCCeeEEEecCCCCCE--EEEEe-------------CCC
Q 035558            3 QKPDLLATSSD-FLRVWRIS-DEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRR--IGTSS-------------IDT   65 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~-------------~dg   65 (253)
                      +++++|++++. .|.+|++. .+    +..........    +.+..++|+ +++++  ++++.             .+|
T Consensus        49 pdg~~l~~~~~~~v~~~~~~~~g----~~~~~~~~~~~----g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           49 HERKNIYGAAMKKWSSFAVKSPT----EIVHEASHPIG----GHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             TTSSEEEEEEBTEEEEEEEEETT----EEEEEEEEECC----SSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCCCEEEEEccceEEEEEECCCC----CEEEeeEeecC----CCCccEEEC-CCCCEEEEEEecCCcceeccceeecCCc
Confidence            35666766665 99999997 54    33322221100    224568899 78884  44553             689


Q ss_pred             eEEEEecc-Cceeeeeee----cccccEEEEEec-CCCeEEEEeC-CCcEEEEEcC-CCCCeeeee-ccCCCCCCeeEEE
Q 035558           66 TCTIWDIE-REAVDTQLI----AHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLR-DKEHSTIIY-ESSEPDTPLVRLG  136 (253)
Q Consensus        66 ~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~-~~~~~~~~~-~~~~~~~~i~~~~  136 (253)
                      .+.+|++. .++....+.    .+...+.+++|+ ++++++++.. ++.|++||+. +++...... ....+...+..++
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~  199 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence            99999997 455443333    245678999999 9988877654 6899999998 554321111 1111234689999


Q ss_pred             eeCCCCCEEEEEEeCCCeEEEEECCC--CCCC-----eeeec----cccc------ceeEEE-EecCCCCeEEEecCC-C
Q 035558          137 WNKQDPRYMATIIMDSAKVVVLDIRF--PTLP-----VVELQ----RHQA------SVNAIA-WAPHSSCHICTAGDD-S  197 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~i~~~d~~~--~~~~-----~~~~~----~~~~------~i~~~~-~~~~~~~~l~~~~~d-g  197 (253)
                      |+| +++++++++..+..|.+|++..  ++..     +..+.    +|..      .+..++ |+|+| ++|++++.+ +
T Consensus       200 ~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~  277 (365)
T 1jof_A          200 MHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANK  277 (365)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESS
T ss_pred             ECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCC
Confidence            999 8998888876544599998753  2210     11121    1222      578999 99999 577766543 2


Q ss_pred             -----cEEEEeccC-CCCCCCCCCCCe-eeccCCCceeEEEEcC---CCCceEEEEc-CCcEEEEEC
Q 035558          198 -----QALIWDLSS-MGQPVEGGLDPI-LAYTAGAEIEQLQWSS---SQPDWVAIAF-STKLQILRV  253 (253)
Q Consensus       198 -----~i~iwd~~~-~~~~~~~~~~~~-~~~~~~~~v~~~~~~~---~~~~~~~~~~-~~~i~vw~l  253 (253)
                           +|.+|++.. +. ..    ... ....+...+..++|+|   +++++++++. ++.|++|++
T Consensus       278 ~~~~~~i~v~~~~~~g~-~~----~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGS-IE----KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             TTSCCEEEEEEECTTSC-EE----EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCCCCeEEEEEECCCCC-EE----EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence                 899999963 32 11    000 1222455677899999   7987777765 489999974

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=5.7e-19  Score=151.08  Aligned_cols=235  Identities=11%  Similarity=0.119  Sum_probs=161.2

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---------CeEEEEec
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---------TTCTIWDI   72 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~   72 (253)
                      +++.+++++ + .|++|++.++    +....+.+|....+......++|| |++++|+.++.+         +.+.+||+
T Consensus        26 ~dg~~~~~~-~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           26 SDHEYLYKQ-ENNILVFNAEYG----NSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             SSSEEEEEE-TTEEEEEETTTC----CEEEEECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCCcEEEEc-CCcEEEEECCCC----ceEEEEechhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            456788887 6 9999999987    666667777633332334558899 899999998876         56779999


Q ss_pred             cCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC-----------------CCeeE
Q 035558           73 EREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD-----------------TPLVR  134 (253)
Q Consensus        73 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------~~i~~  134 (253)
                      ++++... +..|...+...+|+ +++.|+.+. ++.|++||+.+++..+...  .+..                 +....
T Consensus       100 ~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~  175 (740)
T 4a5s_A          100 NKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSA  175 (740)
T ss_dssp             TTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             CCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC--CCCccceecCcccccccchhcCCCcc
Confidence            9887554 56677889999999 999999885 6899999998876433221  1111                 12235


Q ss_pred             EEeeCCCCCEEEEEEeCCC-----------------------------------eEEEEECCC---CCC-Ceeeec----
Q 035558          135 LGWNKQDPRYMATIIMDSA-----------------------------------KVVVLDIRF---PTL-PVVELQ----  171 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~~~~~-----------------------------------~i~~~d~~~---~~~-~~~~~~----  171 (253)
                      +.|+| +++.||.++.|.+                                   .|++||+.+   +.. ....+.    
T Consensus       176 ~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          176 LWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             EEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             eEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence            89999 9999998764432                                   478889887   531 133343    


Q ss_pred             --ccccceeEEEEecCCCCeEEEec----CCCcEEEEeccCCC----CCCCCCCCCeeeccCCCcee-----EEEEcCCC
Q 035558          172 --RHQASVNAIAWAPHSSCHICTAG----DDSQALIWDLSSMG----QPVEGGLDPILAYTAGAEIE-----QLQWSSSQ  236 (253)
Q Consensus       172 --~~~~~i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~  236 (253)
                        +|...+..++|+|+| ++++...    .+..|.+||+.+++    ...   .......+|...+.     .++|+|+|
T Consensus       255 ~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~---~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLV---ARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             HHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECG---GGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeE---EEEeeeccCCceEccCcCCCceEcCCC
Confidence              377789999999999 5555442    34579999998876    111   00112234555444     78899999


Q ss_pred             CceE-EEE-cCCc--EEEEE
Q 035558          237 PDWV-AIA-FSTK--LQILR  252 (253)
Q Consensus       237 ~~~~-~~~-~~~~--i~vw~  252 (253)
                      +.++ ..+ .++.  |.+|+
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEE
T ss_pred             CEEEEEEEcCCCceEEEEEE
Confidence            8766 554 3443  44443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=2.7e-19  Score=158.34  Aligned_cols=220  Identities=9%  Similarity=0.035  Sum_probs=163.1

Q ss_pred             CCceEEeecC--cEE-EEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            4 KPDLLATSSD--FLR-VWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         4 ~~~~l~~~~~--~v~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++..|+.+++  .+. +|++..+    +. ..+.+|.     ..+..++|+ |++++|++++.++.|++||+.+++....
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~----~~-~~l~~~~-----~~~~~~~~S-pDG~~la~~~~~~~v~~~d~~tg~~~~~  415 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTG----KA-EKFEENL-----GNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVI  415 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTC----CE-EECCCCC-----CSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCCceEEEEECCCC----Cc-eEecCCc-----cceeeeEEC-CCCCEEEEECCCCeEEEEECCCCceEEe
Confidence            4455666664  777 8888774    33 3344666     789999999 8999999999999999999999988777


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCC----------cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADG----------SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      +.+|...+.+++|+ ++++|++++.++          .|++||+.+++    ......+...+..++|+| +++.|++++
T Consensus       416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~~~~~~sp-dG~~l~~~s  490 (1045)
T 1k32_A          416 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYAPAFDA-DSKNLYYLS  490 (1045)
T ss_dssp             EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBEEEEEECT-TSCEEEEEE
T ss_pred             ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc----EEEeeCCCcccCCceEcC-CCCEEEEEe
Confidence            77899999999999 999998887654          89999998865    222234455788899999 999999888


Q ss_pred             eCCCeEEEEECCCCC------------------------------------------CCeeeecccccceeEEEEecCCC
Q 035558          150 MDSAKVVVLDIRFPT------------------------------------------LPVVELQRHQASVNAIAWAPHSS  187 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~  187 (253)
                      .++. ...|+.....                                          ..+..+..|...+..++++|++ 
T Consensus       491 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-  568 (1045)
T 1k32_A          491 YRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-  568 (1045)
T ss_dssp             SCCC-CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-
T ss_pred             cccC-CcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-
Confidence            7666 6666532211                                          0122334466778999999998 


Q ss_pred             CeEEE-------------ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          188 CHICT-------------AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       188 ~~l~~-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      .++++             ...+..|.+||+.+++..        .+.   ..+.+++|+|+|+.+++++.+ .+++|++
T Consensus       569 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~--------~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~  635 (1045)
T 1k32_A          569 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--------EVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFP  635 (1045)
T ss_dssp             EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--------EEE---EEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred             eEEEEecccCcccccccccCCCceEEEEECCCCcEE--------Eee---cCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence            56664             123557888888876532        222   678899999999987777655 8999974

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=2.9e-17  Score=124.80  Aligned_cols=230  Identities=8%  Similarity=-0.017  Sum_probs=152.8

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCC-CccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCceeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNK-NSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~   79 (253)
                      +++++++.. + .|++|+.+.     +....+.... ...+...+.++++.++++.++++... ++.|++|| .+++.+.
T Consensus        40 ~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~  113 (286)
T 1q7f_A           40 QNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVR  113 (286)
T ss_dssp             TCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEE
T ss_pred             CCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEE
Confidence            466777755 4 899999875     3344443211 00111567899995366776666543 78999999 4566665


Q ss_pred             eee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+. .+...+.++++. +++++++...++.|.+||... +....+ ........+..++++| +++++++...++. |++
T Consensus       114 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~-i~~  189 (286)
T 1q7f_A          114 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKF-GCSKHLEFPNGVVVND-KQEIFISDNRAHC-VKV  189 (286)
T ss_dssp             EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEE-ECTTTCSSEEEEEECS-SSEEEEEEGGGTE-EEE
T ss_pred             EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEe-CCCCccCCcEEEEECC-CCCEEEEECCCCE-EEE
Confidence            554 234578999999 888888888889999999653 322222 1112334688999999 7877666666666 999


Q ss_pred             EECCCCCCCeeeeccc--ccceeEEEEecCCCCeEEEecCCC-cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          158 LDIRFPTLPVVELQRH--QASVNAIAWAPHSSCHICTAGDDS-QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      ||... . .+..+..+  ...+..++++|++ +++++...++ .|.+||... +...     ..........+.+++++|
T Consensus       190 ~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g-~~~~-----~~~~~~~~~~~~~i~~~~  260 (286)
T 1q7f_A          190 FNYEG-Q-YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDG-QLIS-----ALESKVKHAQCFDVALMD  260 (286)
T ss_dssp             EETTC-C-EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTS-CEEE-----EEEESSCCSCEEEEEEET
T ss_pred             EcCCC-C-EEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCC-CEEE-----EEcccCCCCcceeEEECC
Confidence            99753 2 24445433  3578899999998 6888877775 999999543 2111     011112233578999999


Q ss_pred             CCCceEEEEcCCcEEEEEC
Q 035558          235 SQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       235 ~~~~~~~~~~~~~i~vw~l  253 (253)
                      +++.+++ +.++.|++|++
T Consensus       261 ~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          261 DGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             TTEEEEE-ETTTEEEEEEC
T ss_pred             CCcEEEE-CCCCeEEEEEc
Confidence            9974444 78999999984

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=3.3e-18  Score=142.60  Aligned_cols=189  Identities=12%  Similarity=0.043  Sum_probs=136.3

Q ss_pred             CCeeEEEecCCCCCEEEEEeC-CCeEEEEeccCceeeeeeeccc-ccEEEEEec-CCCeEEEEeC---CCcEEEEEcCC-
Q 035558           43 GPLTSFDWNEAEPRRIGTSSI-DTTCTIWDIEREAVDTQLIAHD-KEVYDIAWG-GVGVFASVSA---DGSVRVFDLRD-  115 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~-  115 (253)
                      .+|.+++|+ ++++.|+.++. ||+++||++.+++..+ +..+. ..+..++|+ + +++++++.   +....+|.+.. 
T Consensus        22 ~~~~~~~~~-~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           22 VEKYSLQGV-VDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             SCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             cchheeecC-CCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            689999999 89999998877 9999999997766554 44444 689999999 7 77777765   45567766654 


Q ss_pred             -CCCeeeeeccCCCCCCeeEEEeeCCCCC-EEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          116 -KEHSTIIYESSEPDTPLVRLGWNKQDPR-YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       116 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                       ......+..   . ......+|+| +++ .+++.+.++. +.+||+.+++  ...+..+..  .+++|+||| ++|+++
T Consensus        99 ~~g~~~~l~~---~-~~~~~~~~s~-dg~~~~~~s~~~~~-~~l~d~~~g~--~~~l~~~~~--~~~~~spDG-~~la~~  167 (582)
T 3o4h_A           99 RPGEEQRLEA---V-KPMRILSGVD-TGEAVVFTGATEDR-VALYALDGGG--LRELARLPG--FGFVSDIRG-DLIAGL  167 (582)
T ss_dssp             STTCCEECTT---S-CSBEEEEEEE-CSSCEEEEEECSSC-EEEEEEETTE--EEEEEEESS--CEEEEEEET-TEEEEE
T ss_pred             CCCccccccC---C-CCceeeeeCC-CCCeEEEEecCCCC-ceEEEccCCc--EEEeecCCC--ceEEECCCC-CEEEEE
Confidence             322222211   1 1345678888 554 4445555556 7799998754  333433333  889999999 689887


Q ss_pred             cCC----CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC--cEEEEEC
Q 035558          194 GDD----SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST--KLQILRV  253 (253)
Q Consensus       194 ~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~vw~l  253 (253)
                      +.|    +.|++||+.+++.        ..+..|...+..++|+|+|+.++++..++  .|.+|++
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~--------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGL--------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDP  225 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCC--------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred             EEcCCCCeEEEEEcCCCCCc--------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence            776    7899999987652        35667888899999999999888777777  7888864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=3.7e-17  Score=128.63  Aligned_cols=231  Identities=8%  Similarity=0.021  Sum_probs=143.9

Q ss_pred             cEEEEEccCCccccceeeeec-CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc-Cceeeeeeec-ccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLN-GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQLIA-HDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~-~~~~v~~   90 (253)
                      .|.+|+++........+.... ...     ..+..++|+ +++++|++++.+ .|.+|++. +++....... ..+.+..
T Consensus        15 ~i~~~~~d~~~g~l~~~~~~~~~~~-----~~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~   87 (365)
T 1jof_A           15 AIFTVQFDDEKLTCKLIKRTEIPQD-----EPISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRA   87 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCTT-----CCCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGG
T ss_pred             cEEEEEEECCCCCEEEeeEEccCCC-----CCCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCcc
Confidence            588887754212222232221 122     357789999 899999988887 99999997 6765433221 1123456


Q ss_pred             EEec-CCCe--EEEEe-------------CCCcEEEEEcCC-CCCeeeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558           91 IAWG-GVGV--FASVS-------------ADGSVRVFDLRD-KEHSTIIYES-SEPDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus        91 ~~~~-~~~~--l~~~~-------------~dg~i~i~d~~~-~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      ++|+ +++.  ++++.             .+|.+.+|++.. ++....+... ..+...+.+++|+| ++++++++....
T Consensus        88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~  166 (365)
T 1jof_A           88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTA  166 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred             EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCC
Confidence            8888 8884  44553             689999999974 4322222211 12334789999999 888888776544


Q ss_pred             CeEEEEECC-CCCC-Ceeeec--ccccceeEEEEecCCCCeEEEec-CCCcEEEEeccC--CCCC---CCCCCCCeeecc
Q 035558          153 AKVVVLDIR-FPTL-PVVELQ--RHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSS--MGQP---VEGGLDPILAYT  222 (253)
Q Consensus       153 ~~i~~~d~~-~~~~-~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~---~~~~~~~~~~~~  222 (253)
                      ..|++||+. +++. .+..+.  .|...+..++|+|+| ++|++++ .++.|.+|++..  ++..   ......+....+
T Consensus       167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g  245 (365)
T 1jof_A          167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD  245 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC
T ss_pred             CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCC
Confidence            449999998 4432 122232  235668999999999 5777665 578999998763  3210   000000000012


Q ss_pred             CCC------ceeEEE-EcCCCCceEEEEcC-C-----cEEEEEC
Q 035558          223 AGA------EIEQLQ-WSSSQPDWVAIAFS-T-----KLQILRV  253 (253)
Q Consensus       223 ~~~------~v~~~~-~~~~~~~~~~~~~~-~-----~i~vw~l  253 (253)
                      |..      .+..++ |+|++++++++..+ +     .|.+|++
T Consensus       246 ~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             cccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence            222      588999 99999977765543 3     7999974

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=1.3e-18  Score=148.50  Aligned_cols=196  Identities=14%  Similarity=0.144  Sum_probs=135.0

Q ss_pred             eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccc---cEEEEEec-CCCeEEEEeC---------CCcEEEEE
Q 035558           46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDK---EVYDIAWG-GVGVFASVSA---------DGSVRVFD  112 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~-~~~~l~~~~~---------dg~i~i~d  112 (253)
                      .+++|+ +++++++ .+.|+.|++||+.+++....+..+..   .+.+++|+ ++++|++++.         ++.|++||
T Consensus        19 ~~~~~s-~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           19 FFPNWI-SGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCEES-SSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CccEEC-CCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            378999 7886555 45699999999999987776665544   38999999 9999998876         78999999


Q ss_pred             cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee-ecccccce--------------
Q 035558          113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE-LQRHQASV--------------  177 (253)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~i--------------  177 (253)
                      +.+++..... ..   ...+..++|+| +++.|+.+. ++. |++||+.++.. ... ..++...+              
T Consensus        97 ~~~g~~~~~~-~l---~~~~~~~~~SP-DG~~la~~~-~~~-i~~~~~~~g~~-~~l~~~~~~~~v~~g~~~~v~~ee~~  168 (719)
T 1z68_A           97 LSNGEFVRGN-EL---PRPIQYLCWSP-VGSKLAYVY-QNN-IYLKQRPGDPP-FQITFNGRENKIFNGIPDWVYEEEML  168 (719)
T ss_dssp             TTTTEECCSS-CC---CSSBCCEEECS-STTCEEEEE-TTE-EEEESSTTSCC-EECCCCCBTTTEEESSCCHHHHHHTT
T ss_pred             CCCCccccce-ec---CcccccceECC-CCCEEEEEE-CCe-EEEEeCCCCCc-EEEecCCCcCCeEcccccceeeeecc
Confidence            9987631001 11   13688999999 999998875 566 99999987653 221 12222222              


Q ss_pred             ---eEEEEecCCCCeEEEecCCC----------------------------------cEEEEeccCCCCC-CCCCCCCee
Q 035558          178 ---NAIAWAPHSSCHICTAGDDS----------------------------------QALIWDLSSMGQP-VEGGLDPIL  219 (253)
Q Consensus       178 ---~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~-~~~~~~~~~  219 (253)
                         .+++|+||| ++|++++.|.                                  .|++||+.++... ......+..
T Consensus       169 ~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  247 (719)
T 1z68_A          169 ATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM  247 (719)
T ss_dssp             CSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred             cCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence               489999999 6888877552                                  7889998876421 000001122


Q ss_pred             eccCCCceeEEEEcCCCCceEEEEcCC----cEEEEE
Q 035558          220 AYTAGAEIEQLQWSSSQPDWVAIAFST----KLQILR  252 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~----~i~vw~  252 (253)
                      +.+|...+.+++|+|+++.+++....+    .|.+|+
T Consensus       248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            346888899999999976444432222    366665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=2.2e-16  Score=124.93  Aligned_cols=228  Identities=10%  Similarity=0.022  Sum_probs=145.4

Q ss_pred             CCceEEeec--C---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            4 KPDLLATSS--D---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         4 ~~~~l~~~~--~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +++.|+.++  +   .|.+||+.++    +......++.     ..+..+.|+ |+++.|+.++.++.|++||+.+++..
T Consensus        46 Dg~~l~~~~~~~g~~~l~~~d~~~g----~~~~lt~~~~-----~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~~  115 (388)
T 3pe7_A           46 DGSKLLFGGAFDGPWNYYLLDLNTQ----VATQLTEGRG-----DNTFGGFLS-PDDDALFYVKDGRNLMRVDLATLEEN  115 (388)
T ss_dssp             TSCEEEEEECTTSSCEEEEEETTTC----EEEECCCSSC-----BCSSSCEEC-TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             CCCEEEEEEcCCCCceEEEEeCCCC----ceEEeeeCCC-----CCccceEEc-CCCCEEEEEeCCCeEEEEECCCCcce
Confidence            455555443  2   4888888876    5555556665     455577899 89999999999999999999998876


Q ss_pred             eeeecccccEEEEEe--c-CCCeEEEE----------------------eCCCcEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558           79 TQLIAHDKEVYDIAW--G-GVGVFASV----------------------SADGSVRVFDLRDKEHSTIIYESSEPDTPLV  133 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~--~-~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~  133 (253)
                      ..+..+...+....|  + ++..++..                      ..+..|.+||+.+++..... .   +...+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~---~~~~~~  191 (388)
T 3pe7_A          116 VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-Q---ENQWLG  191 (388)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-E---ESSCEE
T ss_pred             eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-c---CCcccc
Confidence            666655555544444  5 77777642                      23467999999988643322 2   233688


Q ss_pred             EEEeeCCCCCEEEEEEeCC-----CeEEEEECCCCCCCeeeecccc--cceeEEEEecCCCCeEEEec-CCC----cEEE
Q 035558          134 RLGWNKQDPRYMATIIMDS-----AKVVVLDIRFPTLPVVELQRHQ--ASVNAIAWAPHSSCHICTAG-DDS----QALI  201 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~-~dg----~i~i  201 (253)
                      .++|+|.+++.|+.....+     ..|.++|.....  ...+..+.  ..+..++|+|+| +.|+..+ .++    .|++
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEE
T ss_pred             ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEE
Confidence            9999995567777666532     138888876543  34444444  357889999999 4554433 222    3999


Q ss_pred             EeccCCCCCCCCCCCCeeeccCCC---ceeEEEEcCCCCceEEE---------EcCCcEEEEEC
Q 035558          202 WDLSSMGQPVEGGLDPILAYTAGA---EIEQLQWSSSQPDWVAI---------AFSTKLQILRV  253 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~---------~~~~~i~vw~l  253 (253)
                      ||+.+++...     .....++..   ....++|+|+|+.++..         ..+..|.+|++
T Consensus       269 ~d~~~g~~~~-----l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          269 ADPETLENRQ-----LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             ECTTTCCEEE-----EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             EecCCCceEE-----EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence            9998876321     001111000   01223799999877743         44567888874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.77  E-value=3.4e-16  Score=121.43  Aligned_cols=216  Identities=13%  Similarity=0.007  Sum_probs=147.8

Q ss_pred             EEEEEccCCccccceeeeec-CCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-eeeee---------ec
Q 035558           15 LRVWRISDEDRRVELKSLLN-GNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-VDTQL---------IA   83 (253)
Q Consensus        15 v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---------~~   83 (253)
                      |.+||..++    +....+. ++.     .....++++ ++++++++...++.|++||..... .+..+         ..
T Consensus        71 i~~~d~~~g----~~~~~~~~~~~-----~~p~gia~d-~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~  140 (329)
T 3fvz_A           71 ILVIDPNNA----EILQSSGKNLF-----YLPHGLSID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN  140 (329)
T ss_dssp             EEEECTTTC----CEEEEECTTTC-----SSEEEEEEC-TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred             EEEEECCCC----eEEeccCCCcc-----CCceEEEEC-CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence            899998765    5444443 233     568899999 889988888889999999986542 34444         23


Q ss_pred             ccccEEEEEec--CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccC-------CCCCCeeEEEeeCCC-CCEEEEEEeCC
Q 035558           84 HDKEVYDIAWG--GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESS-------EPDTPLVRLGWNKQD-PRYMATIIMDS  152 (253)
Q Consensus        84 ~~~~v~~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~-~~~l~~~~~~~  152 (253)
                      +-..+..++++  ++.++++.+ .++.|++||. .+.....+....       ..-.....++++| + +.++++...++
T Consensus       141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~  218 (329)
T 3fvz_A          141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENG  218 (329)
T ss_dssp             CCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTT
T ss_pred             ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCC
Confidence            34468899998  466666765 6899999994 344322221111       1112478999999 6 55555555555


Q ss_pred             CeEEEEECCCCCCCeeee--cccccceeEEEEecCCCCeEEE-------ecCCCcEEEEeccCCCCCCCCCCCCeee---
Q 035558          153 AKVVVLDIRFPTLPVVEL--QRHQASVNAIAWAPHSSCHICT-------AGDDSQALIWDLSSMGQPVEGGLDPILA---  220 (253)
Q Consensus       153 ~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~---  220 (253)
                      . |++||..+++. +..+  ..+...+..++|+| + ..+.+       ...+..|++|+..+++...       .+   
T Consensus       219 ~-I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~-------~~~~~  287 (329)
T 3fvz_A          219 R-IQCFKTDTKEF-VREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIID-------VFKPV  287 (329)
T ss_dssp             E-EEEEETTTCCE-EEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEE-------EECCS
T ss_pred             E-EEEEECCCCcE-EEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEE-------EEcCC
Confidence            5 99999985542 5554  34556788999999 3 23333       3345699999998876432       22   


Q ss_pred             ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..+...+.+|+++|+|..+++...++.|++|++
T Consensus       288 ~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          288 RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            356677899999999976667778899999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=6.7e-17  Score=125.86  Aligned_cols=154  Identities=12%  Similarity=0.054  Sum_probs=111.5

Q ss_pred             EEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc-ccEEEEEec-CCCeE-EEEeCCCcEEEEEcCCCCCeeeee
Q 035558           47 SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD-KEVYDIAWG-GVGVF-ASVSADGSVRVFDLRDKEHSTIIY  123 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~  123 (253)
                      .++++ +++.++++++.++.|++||+.+++.+..+..+. ..+..++|+ +++.+ ++...++.|.+||+.+++....+.
T Consensus         4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            44566 778899999999999999999998887776443 257889999 88755 555678999999999876443332


Q ss_pred             ccCCC---CCCeeEEEeeCCCCCEEEEEEeC------------CCeEEEEECCCCCC--CeeeecccccceeEEEEecCC
Q 035558          124 ESSEP---DTPLVRLGWNKQDPRYMATIIMD------------SAKVVVLDIRFPTL--PVVELQRHQASVNAIAWAPHS  186 (253)
Q Consensus       124 ~~~~~---~~~i~~~~~~~~~~~~l~~~~~~------------~~~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~  186 (253)
                      .....   ...+..++|+| +++++++++.+            +. |.+||+.+.+.  .+..+. +...+.+++|+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPR-LEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG  159 (349)
T ss_dssp             SCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCE-EEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS
T ss_pred             cccccccccccccceEECC-CCCEEEEEcccccccccccccCCCe-EEEEECCCccccceeeecc-CCCcccceeECCCC
Confidence            21110   12377899999 89999988865            55 99999987431  123333 33468899999999


Q ss_pred             CCeEEEecCCCcEEEEeccCCC
Q 035558          187 SCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                       + +++++.  .|.+||+.+++
T Consensus       160 -~-l~~~~~--~i~~~d~~~~~  177 (349)
T 1jmx_B          160 -S-LYVAGP--DIYKMDVKTGK  177 (349)
T ss_dssp             -C-EEEESS--SEEEECTTTCC
T ss_pred             -c-EEEccC--cEEEEeCCCCc
Confidence             5 555543  49999998765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=1.3e-15  Score=114.66  Aligned_cols=225  Identities=11%  Similarity=-0.034  Sum_probs=149.0

Q ss_pred             CCceEE-eec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            4 KPDLLA-TSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         4 ~~~~l~-~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      ++++++ +.. + .|.+|+....    ........+.     ..+.++++. ++++++++.. ++.|.+||.........
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~-----~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGST----GTTVLPFNGL-----YQPQGLAVD-GAGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC---------EECCCCSC-----CSCCCEEEC-TTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CCCEEEEccCCCCcEEEecCCCc----ccceEeeCCc-----CCcceeEEC-CCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            456666 533 4 8999987653    2111112222     457789998 7788666655 88999999876543322


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      .......+.++++. +++++++...++.|.+|+..+....  .. .......+..++++| +++++++...++. |.+||
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~--~~-~~~~~~~p~~i~~~~-~g~l~v~~~~~~~-i~~~~  177 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT--VL-PFTGLNDPDGVAVDN-SGNVYVTDTDNNR-VVKLE  177 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE--EC-CCCSCCSCCCEEECT-TCCEEEEEGGGTE-EEEEC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE--ee-ccccCCCceeEEEeC-CCCEEEEECCCCE-EEEEe
Confidence            11233568899999 8888888778889999976554322  11 112223678899999 7776666555566 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ...... ......+...+.+++++++| .++++...++.|.+|+........       ....+...+.++++++++..+
T Consensus       178 ~~~~~~-~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          178 AESNNQ-VVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTV-------LPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             TTTCCE-EECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEE-------CCCCSCSCEEEEEECTTCCEE
T ss_pred             cCCCce-EeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCccee-------eccCCCCCceeEEECCCCCEE
Confidence            876442 22222233568899999998 677887788999999986543211       122334678999999999877


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++...++.|+++++
T Consensus       249 v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          249 VADRGNDRVVKLTS  262 (270)
T ss_dssp             EEEGGGTEEEEECC
T ss_pred             EEECCCCEEEEEcC
Confidence            78888999999874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=6.1e-17  Score=138.56  Aligned_cols=199  Identities=10%  Similarity=0.113  Sum_probs=134.1

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccccc-----EEEEEec-CCCeEEEEeCC---------Cc
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKE-----VYDIAWG-GVGVFASVSAD---------GS  107 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~~~~~~-~~~~l~~~~~d---------g~  107 (253)
                      ....++.|+ +++.+++++  |+.|++||+.+++....+.+|...     ..+++|+ +++.|+.++.+         +.
T Consensus        17 ~~~~~~~w~-~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           17 LKLYSLRWI-SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCEEEC-SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccccEEC-CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            446689999 888888886  899999999999877777766533     2447889 99999998876         56


Q ss_pred             EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccce----------
Q 035558          108 VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASV----------  177 (253)
Q Consensus       108 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i----------  177 (253)
                      +.+||+.+++..    ....+...+...+|+| +++.||.+. ++. |++||+.++........++...+          
T Consensus        94 ~~~~d~~~~~~~----~l~~~~~~~~~~~~SP-dG~~la~~~-~~~-i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           94 YDIYDLNKRQLI----TEERIPNNTQWVTWSP-VGHKLAYVW-NND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEETTTTEEC----CSSCCCTTEEEEEECS-STTCEEEEE-TTE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             EEEEECCCCcEE----EcccCCCcceeeEECC-CCCEEEEEE-CCe-EEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            679999988632    2234455799999999 999998874 566 99999987653222222332222          


Q ss_pred             -------eEEEEecCCCCeEEEecCCC------------------------------------cEEEEeccC---CCCCC
Q 035558          178 -------NAIAWAPHSSCHICTAGDDS------------------------------------QALIWDLSS---MGQPV  211 (253)
Q Consensus       178 -------~~~~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~~~~  211 (253)
                             ..+.|+||| +.|+.++.|.                                    .|++||+.+   +....
T Consensus       167 ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred             chhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence                   358999999 6787765332                                    466777776   42110


Q ss_pred             -CCCCCCeeeccCCCceeEEEEcCCCCceEEEEc-C---CcEEEEE
Q 035558          212 -EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF-S---TKLQILR  252 (253)
Q Consensus       212 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~---~~i~vw~  252 (253)
                       .....+....+|...+..++|+|+++.++.... +   ..|.+|+
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d  291 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICD  291 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEE
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEE
Confidence             000000011137778999999999985554322 2   2577776

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=2.2e-15  Score=116.81  Aligned_cols=221  Identities=12%  Similarity=0.094  Sum_probs=147.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEe
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW   93 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~   93 (253)
                      .++.|  ..     +....+..+.     ..+.+++|+ +++++++++..++.|.+||.++++.......+...+.++++
T Consensus        28 ~~~~~--~~-----~~~~~~~~~~-----~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~   94 (333)
T 2dg1_A           28 ELQTI--TA-----EPWLEISKKG-----LQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI   94 (333)
T ss_dssp             GSCEE--EC-----EEEEEEESSC-----CCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEE
T ss_pred             cCccc--cc-----ceeEEEeccC-----ccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEE
Confidence            77777  22     3344555555     567899999 78888888888999999999887755544346678999999


Q ss_pred             c-CCCeEEEEeCC----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe------CCCeEEEEECCC
Q 035558           94 G-GVGVFASVSAD----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM------DSAKVVVLDIRF  162 (253)
Q Consensus        94 ~-~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------~~~~i~~~d~~~  162 (253)
                      + +++++++...+    +.|.+||..+......+.. ......+..++++| +++++++...      .+. |..+|...
T Consensus        95 ~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~-l~~~~~~~  171 (333)
T 2dg1_A           95 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGG-VYYVSPDF  171 (333)
T ss_dssp             CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEE-EEEECTTS
T ss_pred             CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-CccCCcccceEECC-CCCEEEEeccccccCCCce-EEEEeCCC
Confidence            9 88888877666    6899999987764322221 12334789999999 7877776543      233 66666554


Q ss_pred             CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCC-CCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEG-GLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      ..  ...+..+...+..++|+|++..++++.+.++.|.+||+......... .............+..+++++++..+++
T Consensus       172 ~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~  249 (333)
T 2dg1_A          172 RT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA  249 (333)
T ss_dssp             CC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred             CE--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEE
Confidence            32  33333334467899999998424455567899999999642211100 0000000111246788999999987777


Q ss_pred             EEcCCcEEEEE
Q 035558          242 IAFSTKLQILR  252 (253)
Q Consensus       242 ~~~~~~i~vw~  252 (253)
                      ...++.|.+|+
T Consensus       250 ~~~~~~v~~~d  260 (333)
T 2dg1_A          250 MYGQGRVLVFN  260 (333)
T ss_dssp             EETTTEEEEEC
T ss_pred             EcCCCEEEEEC
Confidence            77778899886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=1.1e-15  Score=120.84  Aligned_cols=215  Identities=8%  Similarity=0.021  Sum_probs=143.9

Q ss_pred             EEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CC--eEEEEeccCceeeeeeecccccEEEEEec
Q 035558           18 WRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DT--TCTIWDIEREAVDTQLIAHDKEVYDIAWG   94 (253)
Q Consensus        18 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~   94 (253)
                      ++..++    .....+..|....+...+...+|+ |+++.|+.++. +|  .|.+||+.+++......++...+..+.|+
T Consensus        15 ~~~~~g----~~~~~lt~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s   89 (388)
T 3pe7_A           15 QDASTG----AQVTRLTPPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS   89 (388)
T ss_dssp             ECTTTC----CEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred             ecCCCC----cceEEecCCcccccchhhcCccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence            445554    555666666522111222337899 89998888887 66  48889999888777666666666677899


Q ss_pred             -CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEE--eeCCCCCEEEEEE----------------------
Q 035558           95 -GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLG--WNKQDPRYMATII----------------------  149 (253)
Q Consensus        95 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~----------------------  149 (253)
                       +++.|+.++.++.|++||+.+++......   .+...+....  ++| ++.+++...                      
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           90 PDDDALFYVKDGRNLMRVDLATLEENVVYQ---VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEE---CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcceeeee---chhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccC
Confidence             99999999999999999999887443332   2222343333  477 787776432                      


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccccceeEEEEec-CCCCeEEEecCC------CcEEEEeccCCCCCCCCCCCCeeecc
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAP-HSSCHICTAGDD------SQALIWDLSSMGQPVEGGLDPILAYT  222 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~  222 (253)
                      .+.. |.+||+.+++  ...+..+...+..++|+| ++ +.|+..+.+      ..|.++|+.....        ..+..
T Consensus       166 ~~~~-l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~--------~~l~~  233 (388)
T 3pe7_A          166 PCCR-LMRVDLKTGE--STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM--------RKVKT  233 (388)
T ss_dssp             CCEE-EEEEETTTCC--EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC--------EESCC
T ss_pred             Ccce-EEEEECCCCc--eEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce--------EEeee
Confidence            1233 9999998764  455556677789999999 98 577665543      3777777765432        12333


Q ss_pred             CC--CceeEEEEcCCCCceEEEEcC-C----cEEEEEC
Q 035558          223 AG--AEIEQLQWSSSQPDWVAIAFS-T----KLQILRV  253 (253)
Q Consensus       223 ~~--~~v~~~~~~~~~~~~~~~~~~-~----~i~vw~l  253 (253)
                      +.  ..+..++|+|+|+.++..+.. +    .|.+|++
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred             CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence            33  367889999999977644432 2    2888764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=5.5e-16  Score=131.03  Aligned_cols=194  Identities=12%  Similarity=0.044  Sum_probs=126.8

Q ss_pred             CCeeEEEecCCCCCEEEEEeCC----------CeEEEEeccC------ceeeeeee-cccccEEEEEec-CCCeEEEEeC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSID----------TTCTIWDIER------EAVDTQLI-AHDKEVYDIAWG-GVGVFASVSA  104 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~  104 (253)
                      ..+.+++|+ |+++.|+.++.+          ..|++||+.+      ++. ..+. .+...+..++|+ +++.|+.++.
T Consensus       130 ~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          130 LRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             EEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             ccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEEC
Confidence            578899999 899999988876          5899999987      553 3344 556778889999 9999998875


Q ss_pred             CC--------cEEEEEcC-CCC--CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-eEEEEECCCCCCCeeeecc
Q 035558          105 DG--------SVRVFDLR-DKE--HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-KVVVLDIRFPTLPVVELQR  172 (253)
Q Consensus       105 dg--------~i~i~d~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~  172 (253)
                      ++        .|++||+. ++.  ....+..  .+...+..++|+| ++++++++..++. .|.+||+.+.+  ...+..
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~--~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~--~~~l~~  282 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLG--GPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGA--ATQLCR  282 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEE--ETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCC--EEESSC
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCC--CCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCc--eeeccc
Confidence            53        79999998 452  2222222  2344789999999 7887777666663 26666765433  233322


Q ss_pred             cc-cc--------eeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEE-EEcCCCCceEEE
Q 035558          173 HQ-AS--------VNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL-QWSSSQPDWVAI  242 (253)
Q Consensus       173 ~~-~~--------i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~  242 (253)
                      +. ..        +..++|+|++ +++++++. +.++||.+.......      ..+..+...+..+ +++++.-.+++.
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~s~~~~~~~~~~~  354 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGEL------VDAAGPWTEWAATLTVSGTRAVGVAA  354 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTEE------EECCSSCCEEEEEEEEETTEEEEEEE
T ss_pred             ccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCcE------EEecCCCCeEEEEEecCCCEEEEEEc
Confidence            22 21        4678899998 68899988 999999554321111      2444566677766 444332222234


Q ss_pred             EcCCcEEEE
Q 035558          243 AFSTKLQIL  251 (253)
Q Consensus       243 ~~~~~i~vw  251 (253)
                      +.+....+|
T Consensus       355 ~~~~~~~i~  363 (662)
T 3azo_A          355 SPRTAYEVV  363 (662)
T ss_dssp             ETTEEEEEE
T ss_pred             CCCCCCEEE
Confidence            444444555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=9.4e-16  Score=120.39  Aligned_cols=212  Identities=9%  Similarity=0.046  Sum_probs=133.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .|.+||..++    +....+..+.     .+  .++|+ +++++++++.          .++.|.+||..+++.+..+..
T Consensus        32 ~v~v~D~~t~----~~~~~i~~g~-----~p--~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~   99 (361)
T 2oiz_A           32 RVHVYDYTNG----KFLGMVPTAF-----NG--HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL   99 (361)
T ss_dssp             EEEEEETTTC----CEEEEEECCE-----EE--EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred             eEEEEECCCC----eEEEEecCCC-----CC--ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence            8999998886    6666776665     44  89999 8999998886          367899999998888777753


Q ss_pred             c------cccEEEEEec-CCCeEEEEeC--CCcEEEEEcCCCCCeee-eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           84 H------DKEVYDIAWG-GVGVFASVSA--DGSVRVFDLRDKEHSTI-IYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        84 ~------~~~v~~~~~~-~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      .      ......++++ ++++|+++..  ++.|.+||+.+.+.... +..   .  ....+.+.|.....+++.+.++.
T Consensus       100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~--~~~~v~~~p~~~~~~~~~~~dg~  174 (361)
T 2oiz_A          100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---A--GCWSVIPQPNRPRSFMTICGDGG  174 (361)
T ss_dssp             CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---T--TEEEEEECTTSSSEEEEEETTSS
T ss_pred             CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---C--CcceeEEcCCCCeeEEEECCCCc
Confidence            2      2346778999 9999988864  68999999998864333 211   0  11112223312223333333333


Q ss_pred             -----------------------------------------------eEEEEECCCCCCCe-eeecc------c----cc
Q 035558          154 -----------------------------------------------KVVVLDIRFPTLPV-VELQR------H----QA  175 (253)
Q Consensus       154 -----------------------------------------------~i~~~d~~~~~~~~-~~~~~------~----~~  175 (253)
                                                                     .+.++|+......+ ..+..      +    ..
T Consensus       175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  254 (361)
T 2oiz_A          175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG  254 (361)
T ss_dssp             EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred             EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence                                                           14444443221100 00000      0    01


Q ss_pred             ceeEEEEecCCCCeEEEecC-----------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          176 SVNAIAWAPHSSCHICTAGD-----------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       176 ~i~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                      ....++|+|++. .++++..           .+.|.+||+.+.+...       ....+.  +.+++|+|+++++++++.
T Consensus       255 g~~~~a~~~dg~-~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~-------~i~~~~--p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          255 GYNLVGLHRASG-RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA-------RIPGRD--ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             CSSCEEEETTTT-EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE-------EEECTT--CCEEEEETTTTEEEEECS
T ss_pred             CeeEEEEecCCC-eEEEEEccCCCcccccCCCceEEEEECCCCcEEE-------EEecCC--eeEEEECCCCCEEEEeCC
Confidence            111278999984 5544322           3589999998876432       333444  999999999997777765


Q ss_pred             CCcEEEEEC
Q 035558          245 STKLQILRV  253 (253)
Q Consensus       245 ~~~i~vw~l  253 (253)
                       +.|.+|++
T Consensus       325 -~~v~v~D~  332 (361)
T 2oiz_A          325 -GNVNVYDI  332 (361)
T ss_dssp             -SCEEEEEC
T ss_pred             -CeEEEEEC
Confidence             99999984

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=8.4e-16  Score=129.93  Aligned_cols=215  Identities=7%  Similarity=-0.040  Sum_probs=141.1

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCee---------EEEecC-CCCCE-EEEEeC-CCeEEEEecc--C-ceee
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT---------SFDWNE-AEPRR-IGTSSI-DTTCTIWDIE--R-EAVD   78 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~-~~~~~-l~~~~~-dg~i~vwd~~--~-~~~~   78 (253)
                      ...||....+    .....+..+.     ..+.         ...|+. |+++. |+.++. +..|+++++.  . ++ .
T Consensus        48 ~~~l~~~~~~----~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~  117 (662)
T 3azo_A           48 RATLVRRRAD----GAEESALPAP-----WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-P  117 (662)
T ss_dssp             EEEEEEECTT----SCEEESSCTT-----CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-C
T ss_pred             cEEEEEECCC----CCcceeCCCC-----ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-C
Confidence            7888886433    3344455554     3333         455552 67877 665543 5677777775  2 33 3


Q ss_pred             eeeec-----ccccEEEEEec-CCCeEEEEeCC----------CcEEEEEcCC------CCCeeeeeccCCCCCCeeEEE
Q 035558           79 TQLIA-----HDKEVYDIAWG-GVGVFASVSAD----------GSVRVFDLRD------KEHSTIIYESSEPDTPLVRLG  136 (253)
Q Consensus        79 ~~~~~-----~~~~v~~~~~~-~~~~l~~~~~d----------g~i~i~d~~~------~~~~~~~~~~~~~~~~i~~~~  136 (253)
                      ..+..     |...+.+++|+ +++.|++++.+          ..|++||+.+      ++. ..+..  .+...+..++
T Consensus       118 ~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~--~~~~~~~~~~  194 (662)
T 3azo_A          118 RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSD--DAHRFVTGPR  194 (662)
T ss_dssp             EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSC--SCSSEECCCE
T ss_pred             EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEe--cCCCcccCce
Confidence            34444     66788999999 99999998877          5899999987      432 22220  2234778899


Q ss_pred             eeCCCCCEEEEEEeCC-------CeEEEEECC-CCC--CCeeeecccccceeEEEEecCCCCeEEEecCCC--cEEEEec
Q 035558          137 WNKQDPRYMATIIMDS-------AKVVVLDIR-FPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDS--QALIWDL  204 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~-------~~i~~~d~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~iwd~  204 (253)
                      |+| +++.|+.++.+.       ..|++||+. ++.  ........|...+..++|+|+| +++++++.++  .|.+||+
T Consensus       195 ~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~  272 (662)
T 3azo_A          195 LSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDP  272 (662)
T ss_dssp             ECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECT
T ss_pred             ECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEEC
Confidence            999 999999887654       359999998 441  2233334456789999999999 5888888888  5555555


Q ss_pred             cCCCCCCCCCCCCeeeccC-CC--------ceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          205 SSMGQPVEGGLDPILAYTA-GA--------EIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~-~~--------~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .+++..        .+..+ ..        .+..++|+|+++.++++.. +..++|.
T Consensus       273 ~~~~~~--------~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          273 ATGAAT--------QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             TTCCEE--------ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             CCCcee--------ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            444311        11111 11        1567899999986667777 8888884

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=1.5e-15  Score=120.31  Aligned_cols=223  Identities=10%  Similarity=0.002  Sum_probs=137.2

Q ss_pred             CCceEEee-c---C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            4 KPDLLATS-S---D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         4 ~~~~l~~~-~---~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +|+.|+.. .   + .|.+|++..+    +......++.     .....+.|+ |+++.|+.++.++.|++||+.+++..
T Consensus        46 dG~~l~~~~~~~g~~~l~~~d~~~~----~~~~l~~~~~-----~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           46 DGKKLLFAGDFDGNRNYYLLNLETQ----QAVQLTEGKG-----DNTFGGFIS-TDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             TSCEEEEEECTTSSCEEEEEETTTT----EEEECCCSSC-----BCTTTCEEC-TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             CCCEEEEEEecCCCceEEEEECCCC----cEEEeecCCC-----CccccceEC-CCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            45555443 2   2 6888898875    4333333332     223347899 89999999999999999999988765


Q ss_pred             eeeecccccEEE---E----------------Eec-CCCeEEEE-----eCCCcEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558           79 TQLIAHDKEVYD---I----------------AWG-GVGVFASV-----SADGSVRVFDLRDKEHSTIIYESSEPDTPLV  133 (253)
Q Consensus        79 ~~~~~~~~~v~~---~----------------~~~-~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~  133 (253)
                      .....+......   +                .|+ +++.++..     ..+..|.+||+.+++.....    .+...+.
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~----~~~~~~~  191 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH----QDTAWLG  191 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE----EESSCEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec----cCCcccc
Confidence            544433332222   2                234 44444433     35668999999887643332    2234788


Q ss_pred             EEEeeCCCCCEEEEEEeCC-----CeEEEEECCCCCCCeeeeccc--ccceeEEEEecCCCCeEEEecCC-----CcEEE
Q 035558          134 RLGWNKQDPRYMATIIMDS-----AKVVVLDIRFPTLPVVELQRH--QASVNAIAWAPHSSCHICTAGDD-----SQALI  201 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i  201 (253)
                      .+.|+|.++..|+..+.++     ..|.+||+....  ...+..+  ...+..++|+|++ ++|+.++.+     +.|++
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEE
T ss_pred             cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCC-CEEEEEecCCCCccceEEE
Confidence            9999995566666555432     238899986543  2333333  2357889999999 566655433     44999


Q ss_pred             EeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCCceEEEE----------------cCCcEEEEEC
Q 035558          202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQPDWVAIA----------------FSTKLQILRV  253 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~----------------~~~~i~vw~l  253 (253)
                      ||+.+++...        ..... ... +.|+| +++.++..+                .+..+.+|++
T Consensus       269 ~d~~~g~~~~--------l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          269 ANPETLENEE--------VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             ECTTTCCEEE--------EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             EECCCCCeEE--------eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence            9998765321        11111 122 89999 998665543                2367888864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=6.3e-14  Score=108.61  Aligned_cols=216  Identities=7%  Similarity=-0.003  Sum_probs=140.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC----CeEEEEeccCcee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID----TTCTIWDIEREAV   77 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~   77 (253)
                      ++++++++. + .|.+||..++    +.......+.     ..+.+++++ ++++++++...+    +.|.+||.++++.
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~~----~~~~~~~~~~-----~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPETK----EIKRPFVSHK-----ANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTTC----CEEEEEECSS-----SSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CCCEEEEECCCCEEEEEeCCCC----cEEEEeeCCC-----CCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence            566776665 4 8999998875    4333333344     679999999 788888777666    6899999987764


Q ss_pred             eeeee--cccccEEEEEec-CCCeEEEEeC------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           78 DTQLI--AHDKEVYDIAWG-GVGVFASVSA------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        78 ~~~~~--~~~~~v~~~~~~-~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      ...+.  .+...+.+++++ +++++++...      .+.|..+|..+++... +..   ....+..++|+| +++.++++
T Consensus       125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~---~~~~~~~i~~~~-dg~~l~v~  199 (333)
T 2dg1_A          125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQ---NISVANGIALST-DEKVLWVT  199 (333)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEE---EESSEEEEEECT-TSSEEEEE
T ss_pred             EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eec---CCCcccceEECC-CCCEEEEE
Confidence            43332  234578999999 8887776654      2456666655444222 211   112578899999 78766555


Q ss_pred             E-eCCCeEEEEECCCCCCCeee--------ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558          149 I-MDSAKVVVLDIRFPTLPVVE--------LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       149 ~-~~~~~i~~~d~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      . .++. |.+||+......+..        +..+ ..+..+++++++ +++++...++.|.+||.. ++...       .
T Consensus       200 ~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~~~-------~  268 (333)
T 2dg1_A          200 ETTANR-LHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYPIG-------Q  268 (333)
T ss_dssp             EGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCEEE-------E
T ss_pred             eCCCCe-EEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCEEE-------E
Confidence            4 4555 999999643222221        1112 367889999998 577777778999999984 33211       1


Q ss_pred             ecc------CCCceeEEEEcCCCCceEEEEcC
Q 035558          220 AYT------AGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       220 ~~~------~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                      ...      |...+.+++|+|++..++.++.+
T Consensus       269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            111      22368999999998666655444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=1.3e-14  Score=110.72  Aligned_cols=214  Identities=7%  Similarity=-0.078  Sum_probs=139.2

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |+...+++++. + .|..|+...     . ...+..+.     ..+.+++++ ++++++++...++.|.+||..+++...
T Consensus        37 ~~g~~l~~~~~~~~~i~~~~~~~-----~-~~~~~~~~-----~~~~~l~~~-~dg~l~v~~~~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           37 PARSAVIFSDVRQNRTWAWSDDG-----Q-LSPEMHPS-----HHQNGHCLN-KQGHLIACSHGLRRLERQREPGGEWES  104 (296)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTS-----C-EEEEESSC-----SSEEEEEEC-TTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-----C-eEEEECCC-----CCcceeeEC-CCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence            33333666665 3 999999887     3 44455555     678999999 788888777667899999997776443


Q ss_pred             eeecc----cccEEEEEec-CCCeEEEEeC-----------------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe
Q 035558           80 QLIAH----DKEVYDIAWG-GVGVFASVSA-----------------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW  137 (253)
Q Consensus        80 ~~~~~----~~~v~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~  137 (253)
                      .....    ...+.+++++ +++++++.+.                 .+.|..++.. ++ ...+.   ........++|
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~---~~~~~~~gi~~  179 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI---RDRVKPNGLAF  179 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE---CCCSSEEEEEE
T ss_pred             EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee---cCCCCCccEEE
Confidence            32211    1345679999 8888887321                 2345555544 32 22222   23336788999


Q ss_pred             eCCCCCEEEEEEeCCCeEEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558          138 NKQDPRYMATIIMDSAKVVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  214 (253)
                      +| +++.+++.+.++. |.+||+......   ...+..+...+.+++++++| +++++.  ++.|.+||.. ++..    
T Consensus       180 s~-dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~~----  249 (296)
T 3e5z_A          180 LP-SGNLLVSDTGDNA-THRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDEL----  249 (296)
T ss_dssp             CT-TSCEEEEETTTTE-EEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCEE----
T ss_pred             CC-CCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCEE----
Confidence            99 8888855555555 999998732221   12223345567789999999 555555  8899999986 3321    


Q ss_pred             CCCeeeccCCCceeEEEE-cCCCCceEEEEcCC
Q 035558          215 LDPILAYTAGAEIEQLQW-SSSQPDWVAIAFST  246 (253)
Q Consensus       215 ~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~  246 (253)
                         .....+.. +.+++| .|+++.|.+++.++
T Consensus       250 ---~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          250 ---GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             ---EEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             ---EEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence               23334445 899999 58887677666653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=2.1e-14  Score=111.26  Aligned_cols=223  Identities=7%  Similarity=-0.083  Sum_probs=148.7

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.++++.. + .|.+||..+.    +.+..+...      .....++++ +++..+++...++.|.+||.++++....+
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~----~~~~~i~~~------~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTF----KEVGRITGF------TSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTC----CEEEEEECC------SSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECccc----EEEEEcCCC------CCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            344555555 3 9999999987    666666433      467889998 66755555447899999999999877766


Q ss_pred             eccc-----ccEEEEEecCCCeEEEEe--CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC---
Q 035558           82 IAHD-----KEVYDIAWGGVGVFASVS--ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD---  151 (253)
Q Consensus        82 ~~~~-----~~v~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~---  151 (253)
                      ....     .....+++. +..++.+.  .++.|.++|..+.+....+...    .....++++| ++++++++..+   
T Consensus       122 ~~g~~~~~~~~p~~i~~~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----~~p~~i~~~~-dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQY-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG----IQPTSLVMDK-YNKMWTITDGGYEG  195 (328)
T ss_dssp             ECTTCCTTTCBCCCEEEE-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS----SCBCCCEECT-TSEEEEEBCCBCTT
T ss_pred             EcCCccccCCCcceEEEE-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----CCccceEEcC-CCCEEEEECCCccC
Confidence            5322     145566664 44444444  4889999999988754444321    1456788998 78776666544   


Q ss_pred             -------CCeEEEEECCCCCCCeeeeccc-ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558          152 -------SAKVVVLDIRFPTLPVVELQRH-QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA  223 (253)
Q Consensus       152 -------~~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (253)
                             +. |.++|..+.+. ...+... ......++|+|++ ++|+++..  .|.+||..+++...     .......
T Consensus       196 ~~~~~~~~~-v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~-----~~~~~~~  265 (328)
T 3dsm_A          196 SPYGYEAPS-LYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV-----RPFLEFR  265 (328)
T ss_dssp             CSSCBCCCE-EEEEETTTTEE-EEEEECCTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS-----SCSBCCC
T ss_pred             CccccCCce-EEEEECCCCeE-EEEEecCCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee-----eeeecCC
Confidence                   45 99999987552 3344321 2367899999998 47776654  89999998765321     0011112


Q ss_pred             CCceeEEEEcCCCCceE-EE----EcCCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWV-AI----AFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~-~~----~~~~~i~vw~l  253 (253)
                      ......++++|++..+. +.    ..++.|.+|+.
T Consensus       266 ~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          266 DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             CCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            56788999999544455 44    46778888863

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=1.6e-14  Score=112.06  Aligned_cols=201  Identities=9%  Similarity=0.007  Sum_probs=138.1

Q ss_pred             CCeeEEEecCCCCCEEEEEeCC------------------------CeEEEEeccCceeeeeee-cccccEEEEEec-CC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSID------------------------TTCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GV   96 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~   96 (253)
                      ..+.+++++ ++++++++...+                        +.|.+||..+++....+. ++-..+..++++ ++
T Consensus        24 ~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           24 GQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             SCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             CCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            679999999 889988888777                        479999999888766554 344578999999 89


Q ss_pred             CeEEEEeCCCcEEEEEcCCCC-Ceeeeecc------CCCCCCeeEEEeeCCCCCEEEEEE-eCCCeEEEEECCCCCCCee
Q 035558           97 GVFASVSADGSVRVFDLRDKE-HSTIIYES------SEPDTPLVRLGWNKQDPRYMATII-MDSAKVVVLDIRFPTLPVV  168 (253)
Q Consensus        97 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~------~~~~~~i~~~~~~~~~~~~l~~~~-~~~~~i~~~d~~~~~~~~~  168 (253)
                      +++++...++.|++||..... ....+...      ..+......++++|.++.++++.+ .++. |++||.. +. .+.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~-I~~~~~~-g~-~~~  179 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR-IVQFSPS-GK-FVT  179 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE-EEEECTT-SC-EEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe-EEEEcCC-CC-EEE
Confidence            988888889999999986552 22222110      122336889999985566666665 3555 9999943 33 244


Q ss_pred             eecc----------cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC----
Q 035558          169 ELQR----------HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS----  234 (253)
Q Consensus       169 ~~~~----------~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----  234 (253)
                      .+..          +-.....++++|++.+++++...+++|++|+..+++...     ......+...+..++++|    
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-----~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-----EIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-----EECCTTTTTCEEEEEEETTEEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-----EEeccccCCCcceeeecCCEEE
Confidence            4432          223488999999843688888899999999998655322     011234567788999999    


Q ss_pred             --CCCceEEEEcCCcEEEEE
Q 035558          235 --SQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       235 --~~~~~~~~~~~~~i~vw~  252 (253)
                        ++..+++...+..+++|+
T Consensus       255 ~~~g~~~v~~~~~~~v~~~~  274 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQGFVMN  274 (329)
T ss_dssp             EEECCCCTTCSCCCCEEEEE
T ss_pred             EeCCCEEeccCCCcEEEEEE
Confidence              332222223344677776

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=1.3e-14  Score=110.16  Aligned_cols=192  Identities=9%  Similarity=-0.007  Sum_probs=134.6

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee------cccccEEEEEec--CCCeEEEEeC-CCcEEEEEc
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI------AHDKEVYDIAWG--GVGVFASVSA-DGSVRVFDL  113 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~--~~~~l~~~~~-dg~i~i~d~  113 (253)
                      ..+.+++++ ++++++++...++.|++||.+ ++.+..+.      ++...+..+++.  ++.++++... ++.|.+|| 
T Consensus        30 ~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-  106 (286)
T 1q7f_A           30 TEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-  106 (286)
T ss_dssp             SCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred             CCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence            578899999 788888888889999999987 55554443      234578899994  6666666543 88999999 


Q ss_pred             CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEE
Q 035558          114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~  191 (253)
                      .+++....+.  ......+..++++| +++++++...++. |.+||... . .+..+.  .+...+..++++|++ ++++
T Consensus       107 ~~g~~~~~~~--~~~~~~~~~i~~~~-~g~l~v~~~~~~~-i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g-~l~v  179 (286)
T 1q7f_A          107 QYGQFVRKFG--ATILQHPRGVTVDN-KGRIIVVECKVMR-VIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQ-EIFI  179 (286)
T ss_dssp             TTSCEEEEEC--TTTCSCEEEEEECT-TSCEEEEETTTTE-EEEECTTS-C-EEEEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred             CCCcEEEEec--CccCCCceEEEEeC-CCCEEEEECCCCE-EEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCC-CEEE
Confidence            4444322221  12234688999999 7877766655666 99999653 2 234443  344568999999998 5778


Q ss_pred             EecCCCcEEEEeccCCCCCCCCCCCCeeec--cCCCceeEEEEcCCCCceEEEEcCC-cEEEEE
Q 035558          192 TAGDDSQALIWDLSSMGQPVEGGLDPILAY--TAGAEIEQLQWSSSQPDWVAIAFST-KLQILR  252 (253)
Q Consensus       192 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~-~i~vw~  252 (253)
                      +...++.|++||..... .       ....  ++...+..+++++++..+++...++ .|.+|+
T Consensus       180 ~~~~~~~i~~~~~~g~~-~-------~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          180 SDNRAHCVKVFNYEGQY-L-------RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             EEGGGTEEEEEETTCCE-E-------EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             EECCCCEEEEEcCCCCE-E-------EEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence            87889999999974321 1       1121  2236789999999998666666665 899986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.69  E-value=3.6e-14  Score=120.94  Aligned_cols=200  Identities=9%  Similarity=0.027  Sum_probs=136.5

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCC-----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCc---------
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDT-----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGS---------  107 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~---------  107 (253)
                      ..+..++|+ |++++|+.+..++     .|++||+.+++....... ...+..++|+ +++.|+.++.++.         
T Consensus       125 ~~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          125 VALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            468899999 8999988765543     899999999986653322 2236779999 9999999888766         


Q ss_pred             -------EEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC----CCeEEEEECCC------CCCCeee
Q 035558          108 -------VRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMD----SAKVVVLDIRF------PTLPVVE  169 (253)
Q Consensus       108 -------i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~~------~~~~~~~  169 (253)
                             |++|++.++... ..+.....+...+..+.|+| ++++|+..+..    ...|++||+.+      +......
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                   999999877532 23334333444678999999 88888877652    23499999986      4323556


Q ss_pred             ecccccceeEEEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCC--ceeEEEEcCCCCceEEEEc
Q 035558          170 LQRHQASVNAIAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGA--EIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       170 ~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~  244 (253)
                      +..+...+.. .|+|+|..+++.+..+   +.|.+||+.++....     ...+..|..  .+..++|++++..+++...
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~  355 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK-----WKVLVPEHEKDVLEWVACVRSNFLVLCYLH  355 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-----CEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-----ceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence            6666655554 5889885344444433   369999988764211     124444433  6888999977765666777


Q ss_pred             CCcEEEE
Q 035558          245 STKLQIL  251 (253)
Q Consensus       245 ~~~i~vw  251 (253)
                      ++..+||
T Consensus       356 ~g~~~l~  362 (710)
T 2xdw_A          356 DVKNTLQ  362 (710)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            7755544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=2.7e-14  Score=111.28  Aligned_cols=197  Identities=10%  Similarity=0.095  Sum_probs=129.3

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---C--eEEEEeccCceeeeeeecccccE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---T--TCTIWDIEREAVDTQLIAHDKEV   88 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g--~i~vwd~~~~~~~~~~~~~~~~v   88 (253)
                      .|.+|++.++    +.. .+         ..+..++|+ |+++.|+.++.+   +  .|.+|++.+++....... .. +
T Consensus        44 ~l~~~d~~~~----~~~-~l---------~~~~~~~~S-pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~  106 (347)
T 2gop_A           44 TIVIENLKNN----ARR-FI---------ENATMPRIS-PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-I  106 (347)
T ss_dssp             EEEEEETTTC----CEE-EE---------ESCEEEEEC-TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-E
T ss_pred             eEEEEeCCCC----ceE-Ec---------ccCCCeEEC-CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-c
Confidence            7888888875    322 22         146789999 899988877653   3  488888888776554443 34 9


Q ss_pred             EEEEec-CCCeEEEEeCC---------------------------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCC
Q 035558           89 YDIAWG-GVGVFASVSAD---------------------------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        89 ~~~~~~-~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      ..++|+ +++.|+.++.+                           ..|.+||+.+++....+..    . .+..++|+| 
T Consensus       107 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~sp-  180 (347)
T 2gop_A          107 RSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHR-  180 (347)
T ss_dssp             EEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEET-
T ss_pred             cceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C-CcccccCCC-
Confidence            999999 99988887642                           5699999988764233322    2 678899999 


Q ss_pred             CCCEEEEEEeCC-----C-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCC--------CcEEEEeccC
Q 035558          141 DPRYMATIIMDS-----A-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD--------SQALIWDLSS  206 (253)
Q Consensus       141 ~~~~l~~~~~~~-----~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~  206 (253)
                      ++ +++++..+.     . ...+|.+.+ .. ...+..+ ..+..+  +|+| +.|+.++.+        ..|.+||  +
T Consensus       181 dg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~  251 (347)
T 2gop_A          181 DK-IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--G  251 (347)
T ss_dssp             TE-EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred             Ce-EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--C
Confidence            77 777665542     1 144444442 32 4444444 445444  9999 567665543        3677777  3


Q ss_pred             CCCCCCCCCCCeeeccCCCceeE-EEEcCCCCceEEEEcCCcEEEE
Q 035558          207 MGQPVEGGLDPILAYTAGAEIEQ-LQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      ++ ..      .....+...+.. +.|+ ++ .+++++.++.+++|
T Consensus       252 ~~-~~------~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          252 KE-VM------GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             SC-EE------ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred             Cc-eE------eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence            22 11      123345677886 9999 87 67788888889888

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=8.9e-14  Score=109.16  Aligned_cols=204  Identities=13%  Similarity=0.114  Sum_probs=127.1

Q ss_pred             cEEEEEccCCccccceeeeecCCCCc-cccCCeeEEEecCCCCCEEEEEeC--CCeEEEEeccCceeeee-eecccccEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNS-EYCGPLTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVDTQ-LIAHDKEVY   89 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~   89 (253)
                      .|.+||..+.    +....+...... ........++++ +++++|+++..  ++.|.+||+.+++.+.. +.. ... .
T Consensus        82 ~v~v~d~~t~----~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~-~  154 (361)
T 2oiz_A           82 VVEVWDADKL----TFEKEISLPPKRVQGLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGC-W  154 (361)
T ss_dssp             EEEEEETTTC----CEEEEEEECTTBCCBCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTE-E
T ss_pred             EEEEEECcCC----cEEEEEEcCccccccCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCc-c
Confidence            7999999876    555555432100 001346689999 89999988864  57999999999887766 432 111 1


Q ss_pred             EEEec--CCCeEEEEeCCCcEEEEEcCC------------------------------------------------CCCe
Q 035558           90 DIAWG--GVGVFASVSADGSVRVFDLRD------------------------------------------------KEHS  119 (253)
Q Consensus        90 ~~~~~--~~~~l~~~~~dg~i~i~d~~~------------------------------------------------~~~~  119 (253)
                      .+.+.  ....+++.+.||.+.+|++..                                                ....
T Consensus       155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~  234 (361)
T 2oiz_A          155 SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK  234 (361)
T ss_dssp             EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred             eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence            12222  223444444455544444432                                                2110


Q ss_pred             eee-eccCC--------CCCCeeEEEeeCCCCCEEEEEEe-C---------CCeEEEEECCCCCCCeeeecccccceeEE
Q 035558          120 TII-YESSE--------PDTPLVRLGWNKQDPRYMATIIM-D---------SAKVVVLDIRFPTLPVVELQRHQASVNAI  180 (253)
Q Consensus       120 ~~~-~~~~~--------~~~~i~~~~~~~~~~~~l~~~~~-~---------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~  180 (253)
                      ... .....        .......++|+| +++.++++.. +         ...|.+||+.+.+. +..+..+.  +.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~i  310 (361)
T 2oiz_A          235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSM  310 (361)
T ss_dssp             EEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEE
T ss_pred             ecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEE
Confidence            000 00000        001112378898 6666666543 1         12499999998663 77777766  8999


Q ss_pred             EEecCCCCeEEEecCCCcEEEEeccCC--CCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          181 AWAPHSSCHICTAGDDSQALIWDLSSM--GQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      +|+|++ ++|++++. +.|.+||..++  +...       ....++.....++++|+|+
T Consensus       311 a~spdg-~~l~v~n~-~~v~v~D~~t~~l~~~~-------~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          311 TIDQQR-NLMLTLDG-GNVNVYDISQPEPKLLR-------TIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEETTT-TEEEEECS-SCEEEEECSSSSCEEEE-------EETTSCSSEEEEEECCCSC
T ss_pred             EECCCC-CEEEEeCC-CeEEEEECCCCcceeeE-------EeccCCCCcEEEEecCCCC
Confidence            999999 58888886 99999999987  4321       3346778889999999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=3.2e-14  Score=108.56  Aligned_cols=195  Identities=10%  Similarity=0.021  Sum_probs=137.4

Q ss_pred             CCeeEEEecCCCCC-EEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           43 GPLTSFDWNEAEPR-RIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        43 ~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      ....+++|+ ++++ +++++..++.|..|+..++  ...+..+...+.+++++ +++++++...++.|.+||..+++...
T Consensus        28 ~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           28 TWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES  104 (296)
T ss_dssp             SSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred             ccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence            456789999 7777 7888888999999999876  55666677789999999 88888877778899999997776332


Q ss_pred             eeeccC-CCCCCeeEEEeeCCCCCEEEEE----Ee-------------CCCeEEEEECCCCCCCeeeecccccceeEEEE
Q 035558          121 IIYESS-EPDTPLVRLGWNKQDPRYMATI----IM-------------DSAKVVVLDIRFPTLPVVELQRHQASVNAIAW  182 (253)
Q Consensus       121 ~~~~~~-~~~~~i~~~~~~~~~~~~l~~~----~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  182 (253)
                      ...... .....+..++++| +++++++.    +.             .+. |..++..  .. ...+..+......++|
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~-l~~~~~~--g~-~~~~~~~~~~~~gi~~  179 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRW-VFRLAPD--GT-LSAPIRDRVKPNGLAF  179 (296)
T ss_dssp             EECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCE-EEEECTT--SC-EEEEECCCSSEEEEEE
T ss_pred             EeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcE-EEEECCC--CC-EEEeecCCCCCccEEE
Confidence            221111 1122567899999 88888763    21             223 6666654  22 4455556667899999


Q ss_pred             ecCCCCeEEEecCCCcEEEEeccCCCCC-CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          183 APHSSCHICTAGDDSQALIWDLSSMGQP-VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +|++ +.|++.+.++.|.+|++...... .   . ......+...+.+++++++|..+++.  ++.|.+|+
T Consensus       180 s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~---~-~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~  243 (296)
T 3e5z_A          180 LPSG-NLLVSDTGDNATHRYCLNARGETEY---Q-GVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT  243 (296)
T ss_dssp             CTTS-CEEEEETTTTEEEEEEECSSSCEEE---E-EEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred             CCCC-CEEEEeCCCCeEEEEEECCCCcCcC---C-CeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence            9999 56788888999999999732211 0   0 01112345567789999999855554  78888886

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=8.3e-14  Score=105.18  Aligned_cols=212  Identities=11%  Similarity=0.002  Sum_probs=149.9

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +++|++++ + .|++||..++    +.+..+..+..    ..+.++.+. +++++++  +.++.|+.||. +++.+..+.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~----~~~~~~~~~-pdG~ilv--s~~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTK----EIVWEYPLEKG----WECNSVAAT-KAGEILF--SYSKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTT----EEEEEEECCTT----CCCCEEEEC-TTSCEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCC----eEEEEeCCCcc----CCCcCeEEC-CCCCEEE--eCCCCEEEECC-CCCEEEEEc
Confidence            46777776 4 9999999787    77777776541    257788999 8899888  34678999999 788888887


Q ss_pred             cc-cccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccC---CCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           83 AH-DKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESS---EPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        83 ~~-~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      .+ ...+.++.+. +++++++.+. ++.|..+|. +++.........   .+......+++.+ +++++++...++. |.
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~-v~  149 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSE-VR  149 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTE-EE
T ss_pred             CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCE-EE
Confidence            64 3578888888 9999999887 777877776 344222221111   1112344566777 8999988877777 99


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeecc------CCCceeEE
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYT------AGAEIEQL  230 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~  230 (253)
                      .||.. ++. +.++... ..+.++...+++ +++++++.+++|..+|..+++..-       ....      ....+..+
T Consensus       150 ~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w-------~~~~~~~~~~~l~~~~~~  218 (276)
T 3no2_A          150 EIAPN-GQL-LNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVR-------RVNANDIEGVQLFFVAQL  218 (276)
T ss_dssp             EECTT-SCE-EEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEEE-------EEEGGGSBSCCCSEEEEE
T ss_pred             EECCC-CCE-EEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEE-------EecCCCCCCccccccccc
Confidence            99987 553 6666543 456678888998 588888888899999998776432       1111      12347788


Q ss_pred             EEcCCCCceEEE
Q 035558          231 QWSSSQPDWVAI  242 (253)
Q Consensus       231 ~~~~~~~~~~~~  242 (253)
                      +..+++..+++.
T Consensus       219 ~~~~~G~i~v~~  230 (276)
T 3no2_A          219 FPLQNGGLYICN  230 (276)
T ss_dssp             EECTTSCEEEEE
T ss_pred             eEcCCCCEEEEe
Confidence            888888755444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=3.3e-14  Score=110.77  Aligned_cols=210  Identities=14%  Similarity=0.111  Sum_probs=136.8

Q ss_pred             CCCceEEeec-----C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----------
Q 035558            3 QKPDLLATSS-----D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----------   64 (253)
Q Consensus         3 ~~~~~l~~~~-----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------   64 (253)
                      ++|+.|+..+     +  .|.+|++..+    +..... .+.     . +..++|+ |+++.|+.++.+           
T Consensus        68 pDg~~la~~~~~~~~~~~~l~~~~~~~g----~~~~l~-~~~-----~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           68 PDGKKIAFMRANEEKKVSEIWVADLETL----SSKKIL-EAK-----N-IRSLEWN-EDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             TTSSEEEEEEEETTTTEEEEEEEETTTT----EEEEEE-EES-----E-EEEEEEC-TTSSEEEEEEECCCC--------
T ss_pred             CCCCEEEEEEeccCCCcceEEEEECCCC----ceEEEE-cCC-----C-ccceeEC-CCCCEEEEEEccCCCcCCcEEEc
Confidence            3455555543     2  4888888775    333332 233     4 8899999 889888877632           


Q ss_pred             ----------------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC-------cEEEEEcCCCCCee
Q 035558           65 ----------------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG-------SVRVFDLRDKEHST  120 (253)
Q Consensus        65 ----------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-------~i~i~d~~~~~~~~  120 (253)
                                      ..|++||+.+++.+..+.. . .+..+.|+ ++ +++++..++       ...+|.+.+++ ..
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~  211 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EE  211 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EE
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eE
Confidence                            5799999988876455554 3 78899999 88 777776542       44555554332 23


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-------CeEEEEECCCCCCCeeeecccccceeE-EEEecCCCCeEEE
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-------AKVVVLDIRFPTLPVVELQRHQASVNA-IAWAPHSSCHICT  192 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~  192 (253)
                      .+...    ..+..+  +| +++.|+.++.+.       ..|.+||  + .........+...+.. +.|+ ++  ++++
T Consensus       212 ~l~~~----~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg--~~~~  278 (347)
T 2gop_A          212 KMFEK----VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK--VYFT  278 (347)
T ss_dssp             EEEEE----ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE--EEEE
T ss_pred             EeccC----cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc--EEEE
Confidence            33221    244444  88 888888776543       2488888  3 2223334455677886 8998 75  8888


Q ss_pred             ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcE-EEEE
Q 035558          193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKL-QILR  252 (253)
Q Consensus       193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i-~vw~  252 (253)
                      ++.++.+++| +.+++ .       .....+...|.+++|+|  ..+++.+.++.. .+|.
T Consensus       279 ~~~~~~~~l~-~~~g~-~-------~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          279 LFEEGSVNLY-IWDGE-I-------KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFT  328 (347)
T ss_dssp             EEETTEEEEE-EESSS-E-------EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred             EecCCcEEEE-EcCCc-e-------EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence            9999999999 87322 1       24445577899999999  456666666654 6764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=7.7e-13  Score=100.63  Aligned_cols=223  Identities=9%  Similarity=-0.005  Sum_probs=148.1

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeee-ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-ee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSL-LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV-DT   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~   79 (253)
                      ++.++++.. + .|.+|+.. +    +.... ...+.     ..+.++++. +++.++++...++.|..||.. ++. ..
T Consensus        25 ~g~l~v~~~~~~~v~~~d~~-~----~~~~~~~~~~~-----~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~   92 (299)
T 2z2n_A           25 KGKVWITQHKANMISCINLD-G----KITEYPLPTPD-----AKVMCLTIS-SDGEVWFTENAANKIGRITKK-GIIKEY   92 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTT-C----CEEEEECSSTT-----CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CCCEEEEecCCCcEEEEcCC-C----CeEEecCCccc-----CceeeEEEC-CCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence            455666654 4 89999987 4    32221 12233     568899999 788887777668899999986 332 11


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      .+......+.++++. ++.++++...++.|..||. +++.. .. ........+..+++++ +++++++...++. |..|
T Consensus        93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~-~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~-i~~~  167 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY-ELPNKGSYPSFITLGS-DNALWFTENQNNA-IGRI  167 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE-ECSSTTCCEEEEEECT-TSCEEEEETTTTE-EEEE
T ss_pred             eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee-cCCCCCCCCceEEEcC-CCCEEEEeCCCCE-EEEE
Confidence            222244578899999 8888888777889999998 44322 12 1222334788999998 7776665544556 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      |. +..............+.++++++++ +++++...++.|.+||. ++....      .....+...+.++++++++..
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~------~~~~~~~~~~~~i~~~~~g~l  238 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEITE------FKIPTPNARPHAITAGAGIDL  238 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEE------EECSSTTCCEEEEEECSTTCE
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEEE------EECCCCCCCceeEEECCCCCE
Confidence            98 4332111123344568899999998 57777767889999998 544211      112234567899999999985


Q ss_pred             eEEEEcCCcEEEEE
Q 035558          239 WVAIAFSTKLQILR  252 (253)
Q Consensus       239 ~~~~~~~~~i~vw~  252 (253)
                      +++...++.|..|+
T Consensus       239 ~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          239 WFTEWGANKIGRLT  252 (299)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEeccCCceEEEEC
Confidence            55554677888876

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=1.1e-14  Score=115.20  Aligned_cols=222  Identities=8%  Similarity=-0.022  Sum_probs=137.9

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeE-------------------EEecCCCCCEEEEE-
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-------------------FDWNEAEPRRIGTS-   61 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-   61 (253)
                      +++.|+.++ + .|++|++..+    +.......+.     .....                   +.|+ |+++.++.+ 
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~~----~~~~~~~~~~-----~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~  160 (396)
T 3c5m_A           91 DERAFFYVKNELNLMKVDLETL----EEQVIYTVDE-----EWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAE  160 (396)
T ss_dssp             TSSEEEEEETTTEEEEEETTTC----CEEEEEECCT-----TEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHH
T ss_pred             CCCEEEEEEcCCcEEEEECCCC----CcEEEEeccc-----ccCCCCCEEEeccCCccccccccccccC-CCCcceeeee
Confidence            555665555 4 8999999875    4444444333     11111                   3456 566665543 


Q ss_pred             ----eCCCeEEEEeccCceeeeeeecccccEEEEEec--CCCeEEEEeCC------CcEEEEEcCCCCCeeeeeccCCCC
Q 035558           62 ----SIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--GVGVFASVSAD------GSVRVFDLRDKEHSTIIYESSEPD  129 (253)
Q Consensus        62 ----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~  129 (253)
                          ..+..|++||+.+++..... .+...+..+.|+  +++.|+..+.+      ..|.+||+.+.+... +.. ....
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~-~~~~  237 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKE-HAEG  237 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSC-CCTT
T ss_pred             eccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eec-cCCC
Confidence                35668999999887755443 466778899998  46667666543      368888887654222 211 1112


Q ss_pred             CCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCCCeeeecccccceeEEEEec-CCCCeEEEec----------
Q 035558          130 TPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTLPVVELQRHQASVNAIAWAP-HSSCHICTAG----------  194 (253)
Q Consensus       130 ~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~----------  194 (253)
                      ..+..++|+| +++.|+.++.++    ..|++||+.++.  ...+..... .. +.|+| ++ +++++++          
T Consensus       238 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          238 ESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLE--NEEVMVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             EEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCC--EEEEEECCS-EE-EEEECSSS-SEEEEEECCC-------
T ss_pred             ccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCC--eEEeeeCCC-CC-CCccCCCC-ceEEEecCCcceeeccc
Confidence            2578899999 888777766541    239999998754  222221111 23 89999 98 5777654          


Q ss_pred             ------CCCcEEEEeccCCCCCCCCCCCCeeeccCCC-----------ceeEEEEcCCCCceEEEEc-CCcEEEEE
Q 035558          195 ------DDSQALIWDLSSMGQPVEGGLDPILAYTAGA-----------EIEQLQWSSSQPDWVAIAF-STKLQILR  252 (253)
Q Consensus       195 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~~-~~~i~vw~  252 (253)
                            .++.|++||+.++...        .+..+..           .+..++|+|+++.++..+. ++...+|.
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQ--------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCC--------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cccccCCCCcEEEEecccCceE--------EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence                  3478999999876521        2233332           2567899999987775554 55566664

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=2.4e-13  Score=115.86  Aligned_cols=227  Identities=6%  Similarity=-0.032  Sum_probs=146.3

Q ss_pred             CCCceEEeec-----C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe---------
Q 035558            3 QKPDLLATSS-----D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT---------   66 (253)
Q Consensus         3 ~~~~~l~~~~-----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---------   66 (253)
                      +++++||.+.     +  .|++||+.++    +.......+      ..+..++|+ ++++.|+.++.++.         
T Consensus       134 PDg~~la~~~~~~G~~~~~i~v~d~~tg----~~~~~~~~~------~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          134 EDGEYFAYGLSASGSDWVTIKFMKVDGA----KELPDVLER------VKFSCMAWT-HDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             TTSSEEEEEEEETTCSCEEEEEEETTTT----EEEEEEEEE------ECSCCEEEC-TTSSEEEEEECCCCSSCCSSSCC
T ss_pred             CCCCEEEEEEcCCCCceEEEEEEECCCC----CCCcccccC------cccceEEEE-eCCCEEEEEEECCcccccccccc
Confidence            4566666432     2  7999999886    433322222      236689999 89999998887765         


Q ss_pred             -------EEEEeccCceee--e--eeecccccEEEEEec-CCCeEEEEeC-----CCcEEEEEcCC------CC-Ceeee
Q 035558           67 -------CTIWDIEREAVD--T--QLIAHDKEVYDIAWG-GVGVFASVSA-----DGSVRVFDLRD------KE-HSTII  122 (253)
Q Consensus        67 -------i~vwd~~~~~~~--~--~~~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~  122 (253)
                             |++|++.+++..  .  ....|...+..+.|+ ++++|+..+.     +..|++||+.+      +. ....+
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence                   999999876522  2  222345567899999 9998887765     56899999986      42 23333


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCCC-Ceeeeccccc--ceeEEEEecCCCCeEEEecCC
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPTL-PVVELQRHQA--SVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      ..   +...+.. .|+| ++..|+..+..+   ..|.+||+.+... ....+..|..  .+..++|++++ .++++...|
T Consensus       283 ~~---~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~  356 (710)
T 2xdw_A          283 ID---NFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHD  356 (710)
T ss_dssp             EC---SSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEET
T ss_pred             eC---CCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEEC
Confidence            22   2223333 4778 777776665532   2499999987541 1344544543  68889999766 688888888


Q ss_pred             CcE--EEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE-Ec---CCcEEEEEC
Q 035558          197 SQA--LIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI-AF---STKLQILRV  253 (253)
Q Consensus       197 g~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~---~~~i~vw~l  253 (253)
                      +..  .+|++.+++..       ..+..+...+..++++|+++.++.. ++   .+.+..|++
T Consensus       357 g~~~l~~~~~~~g~~~-------~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          357 VKNTLQLHDLATGALL-------KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             TEEEEEEEETTTCCEE-------EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             CEEEEEEEECCCCCEE-------EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            854  55565454422       1334457788999999988765533 22   246766663

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.62  E-value=1.9e-14  Score=112.72  Aligned_cols=179  Identities=9%  Similarity=-0.014  Sum_probs=128.9

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------eee-eeecccccEEEEEecCCCeEEEEeCCCcEEEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---------VDT-QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFD  112 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d  112 (253)
                      .++..++++ +...++++|+.+ .+++|+++..+         ... ....+.. |+.|+| +++.|+++ .++.|++||
T Consensus        38 ~~~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           38 ASLQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SCCBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEE-ESSEEEEEE
T ss_pred             ccccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEE-cCCcEEEEE
Confidence            468899999 888899999887 46679876543         111 1224566 999999 89999998 889999999


Q ss_pred             cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE
Q 035558          113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  192 (253)
                      +++........   .++..+.++.+.+.   .++++..+|. +.+||+.+... . .   +...|++++|+|+|   ++.
T Consensus       113 v~sl~~~~~~~---~~~~~v~~i~~~~p---~~av~~~dG~-L~v~dl~~~~~-~-~---~~~~Vs~v~WSpkG---~~v  177 (388)
T 1xip_A          113 LEELSEFRTVT---SFEKPVFQLKNVNN---TLVILNSVND-LSALDLRTKST-K-Q---LAQNVTSFDVTNSQ---LAV  177 (388)
T ss_dssp             SSSTTCEEEEE---ECSSCEEEEEECSS---EEEEEETTSE-EEEEETTTCCE-E-E---EEESEEEEEECSSE---EEE
T ss_pred             chhhhccCccc---eeecceeeEEecCC---CEEEEECCCC-EEEEEccCCcc-c-c---ccCCceEEEEcCCc---eEE
Confidence            98876444333   22346788877652   2888888888 99999987552 2 2   45689999999998   567


Q ss_pred             ecCCCcEEEEeccCCCCC-CCCCCCCeeec---cCCCceeEEEEcCCCCceEE
Q 035558          193 AGDDSQALIWDLSSMGQP-VEGGLDPILAY---TAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       193 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~  241 (253)
                      |..||++++|+....... ......|....   +|...|.+|.|.+++.++++
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            888999999988765520 10001111112   47899999999999876665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=1.2e-12  Score=100.41  Aligned_cols=224  Identities=6%  Similarity=0.029  Sum_probs=141.6

Q ss_pred             CCCceEEe-------e-cC-cEEEEEccCCccccceeeeec----CCCCccccCCeeEEEecCCC-CCEEEEEeCCCeEE
Q 035558            3 QKPDLLAT-------S-SD-FLRVWRISDEDRRVELKSLLN----GNKNSEYCGPLTSFDWNEAE-PRRIGTSSIDTTCT   68 (253)
Q Consensus         3 ~~~~~l~~-------~-~~-~v~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~   68 (253)
                      +++.++++       + .+ .|.+|+..++    +......    ++.     ..+.+++++ ++ ++++++. ..+.|.
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~-----~~~~~i~~~-~~~g~l~v~~-~~~~l~   95 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTG----KKTVICKPEVNGYG-----GIPAGCQCD-RDANQLFVAD-MRLGLL   95 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTC----CEEEEECCEETTEE-----CCEEEEEEC-SSSSEEEEEE-TTTEEE
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCC----cEEEEEecccCCCC-----CCCceEEEe-cCCCcEEEEE-CCCCEE
Confidence            35566666       3 34 8999998764    3222111    133     568899998 66 6655544 445799


Q ss_pred             EEeccCceeeee-eec----ccccEEEEEec-CCCeEEEEeCC---------------CcEEEEEcCCCCCeeeeeccCC
Q 035558           69 IWDIEREAVDTQ-LIA----HDKEVYDIAWG-GVGVFASVSAD---------------GSVRVFDLRDKEHSTIIYESSE  127 (253)
Q Consensus        69 vwd~~~~~~~~~-~~~----~~~~v~~~~~~-~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~  127 (253)
                      +||.+ ++.... ...    ....+.++++. +++++++...+               +.|..+|.. ++. .....   
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~---  169 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVDT---  169 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEEE---
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEecc---
Confidence            99988 664332 211    12357899999 88887777655               467777655 332 22211   


Q ss_pred             CCCCeeEEEee----CCCCCEEEEEEe-CCCeEEEEECC-CCCC----Ceeeecccc-cceeEEEEecCCCCeEEEecCC
Q 035558          128 PDTPLVRLGWN----KQDPRYMATIIM-DSAKVVVLDIR-FPTL----PVVELQRHQ-ASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       128 ~~~~i~~~~~~----~~~~~~l~~~~~-~~~~i~~~d~~-~~~~----~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      .......++|+    | +++.++++.. ++. |.+||.. ....    ....+..+. ..+..++++++| +++++...+
T Consensus       170 ~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~  246 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDG-RPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGS  246 (314)
T ss_dssp             EESSEEEEEEEECTTS-CEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETT
T ss_pred             CCCCcceEEEecccCC-CCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCC
Confidence            11246788999    8 7766666554 455 9999976 2221    122233333 567889999998 577777778


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE-EEEcCCcEEEEEC
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      +.|.+||..+++...       ....+...+.+++++|+++.++ +...++.|..|++
T Consensus       247 ~~i~~~d~~~g~~~~-------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKM-------RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TEEEEECTTCBSCSE-------EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEcCCCCcEeE-------EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            899999987544322       3334557899999999998444 4445678887764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=1.1e-12  Score=108.39  Aligned_cols=229  Identities=10%  Similarity=0.013  Sum_probs=150.3

Q ss_pred             ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEecc--Cceeeeee
Q 035558            6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIE--REAVDTQL   81 (253)
Q Consensus         6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~   81 (253)
                      .++++..+  .|.++|..++    +.+..+....      .+..+.|+ ++++++++++.|+.|.+||+.  +++.+..+
T Consensus       168 ~~~V~~~~~~~V~viD~~t~----~v~~~i~~g~------~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTY----EIKTVLDTGY------AVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTC----CEEEEEECSS------CEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCC----eEEEEEeCCC------CccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence            34455543  9999999987    7777776543      46689999 899999999999999999995  77777777


Q ss_pred             ecccccEEEEEec-----CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccC--------CCCCCeeEEEeeCCCCCEEEE
Q 035558           82 IAHDKEVYDIAWG-----GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESS--------EPDTPLVRLGWNKQDPRYMAT  147 (253)
Q Consensus        82 ~~~~~~v~~~~~~-----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~~  147 (253)
                      .... ....++|+     ++++++++.. +++|.++|..+.+....+....        ..+..+..+..++ ++..+++
T Consensus       237 ~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~-~~~~~vv  314 (567)
T 1qks_A          237 KIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIV  314 (567)
T ss_dssp             ECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEE
T ss_pred             ecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC-CCCEEEE
Confidence            6433 45788888     6777776655 5999999999887665544221        0122677888888 4444444


Q ss_pred             EEeCCCeEEEEECCCCCCC-eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe-eeccCCC
Q 035558          148 IIMDSAKVVVLDIRFPTLP-VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI-LAYTAGA  225 (253)
Q Consensus       148 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~  225 (253)
                      .-.+.+.|.++|....... +..+ ........+.|+|++..++++...++.|.++|+.+++...   ..+. ....|.+
T Consensus       315 ~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~---~i~vgg~~Phpg  390 (567)
T 1qks_A          315 NVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA---IEDTGGQTPHPG  390 (567)
T ss_dssp             EETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE---EEECSSSSBCCT
T ss_pred             EecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE---EEeccCcCCCCc
Confidence            4455445999998765421 2222 2334567889999994334555578999999999876322   0000 1112332


Q ss_pred             ceeEEEEcCCCCceEEEE--cCCcEEEEE
Q 035558          226 EIEQLQWSSSQPDWVAIA--FSTKLQILR  252 (253)
Q Consensus       226 ~v~~~~~~~~~~~~~~~~--~~~~i~vw~  252 (253)
                      .-..+ ++|++..+.+.+  .++.|.+++
T Consensus       391 ~g~~~-~~p~~g~v~~t~~~g~~~Vsvid  418 (567)
T 1qks_A          391 RGANF-VHPTFGPVWATSHMGDDSVALIG  418 (567)
T ss_dssp             TCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred             cceee-ECCCCCcEEEeCCCCCCeEEEec
Confidence            22222 578744444433  357888876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=1.9e-13  Score=116.30  Aligned_cols=226  Identities=11%  Similarity=0.020  Sum_probs=141.3

Q ss_pred             CCCceEE-----eecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe---------
Q 035558            3 QKPDLLA-----TSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT---------   66 (253)
Q Consensus         3 ~~~~~l~-----~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---------   66 (253)
                      ++|++||     .|++  .|++||+.++    +...  ..+...   .....++|+ ++++.|+.++.|..         
T Consensus       130 PDG~~la~~~~~~G~~~~~i~v~dl~tg----~~~~--~~~~~~---~~~~~~~ws-pDg~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          130 WDGKKVAFAQKPNAADEAVLHVIDVDSG----EWSK--VDVIEG---GKYATPKWT-PDSKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             TTSSEEEEEEEETTCSCCEEEEEETTTC----CBCS--SCCBSC---CTTCCCEEC-TTSSEEEEEECCCCTTSCGGGGG
T ss_pred             CCCCEEEEEECCCCCceEEEEEEECCCC----CCcC--CcccCc---ccccceEEe-cCCCEEEEEEecCCCCCccccCC
Confidence            4667777     4553  8999999986    3321  111100   112689999 89999999888776         


Q ss_pred             ----EEEEeccCce----eeeeeecccccEEEEEec-CCCeEEEEeCCC----cEEEEEcCCCCCeeeeeccCCCCCCee
Q 035558           67 ----CTIWDIEREA----VDTQLIAHDKEVYDIAWG-GVGVFASVSADG----SVRVFDLRDKEHSTIIYESSEPDTPLV  133 (253)
Q Consensus        67 ----i~vwd~~~~~----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~i~  133 (253)
                          |++|++.++.    .+.....+...+..+.|+ ++++|+.++.++    .|.++|..+++. ..+...   ...+.
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~---~~~~~  275 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKG---VGAKY  275 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEEC---SSCCE
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecC---CCceE
Confidence                9999998775    333333455678899999 999888877666    677776554432 223222   22445


Q ss_pred             EEEeeCCCCCEEEEEEeC--CCeEEEEECCCCCC-Ceeeeccc--ccceeEEEEecCCCCeEEEecCCCcEEEEeccC-C
Q 035558          134 RLGWNKQDPRYMATIIMD--SAKVVVLDIRFPTL-PVVELQRH--QASVNAIAWAPHSSCHICTAGDDSQALIWDLSS-M  207 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~--~~~i~~~d~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~  207 (253)
                      ...+ + ++.+++.+..+  ...|.+||+.+... ....+..+  ...+..++|+ ++ .++++...|+..++|.+.. +
T Consensus       276 ~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          276 EVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             EEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTC
T ss_pred             EEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC
Confidence            5556 4 45544443322  23499999976541 12333333  4467888888 44 6888999999999987763 2


Q ss_pred             CCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEEEc----CCcEEEEEC
Q 035558          208 GQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAIAF----STKLQILRV  253 (253)
Q Consensus       208 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~----~~~i~vw~l  253 (253)
                      ...       ..+. .....+..++++|+++.++....    .+.+.+|++
T Consensus       352 ~~~-------~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          352 KPV-------RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             CEE-------EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             Cee-------EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            211       1222 23667888999998876663222    246777764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=2.7e-12  Score=102.33  Aligned_cols=225  Identities=11%  Similarity=0.030  Sum_probs=146.7

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCceee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVD   78 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~   78 (253)
                      ++++++++...  .|++||...+    .........      .... ++|+ ++++.|+++..++  .|.+++...+...
T Consensus       140 ~~g~lyv~d~~~~~I~~id~~~g----~~~~~~~~~------~~~~-ia~~-~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          140 GNNTVLAYQRDDPRVRLISVDDN----KVTTVHPGF------KGGK-PAVT-KDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             STTEEEEEETTTTEEEEEETTTT----EEEEEEETC------CBCB-CEEC-TTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCCCEEEEecCCCcEEEEECCCC----EEEEeeccC------CCCc-eeEe-cCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            35567776653  9999999875    433333332      2233 8899 7888888888766  7888988765543


Q ss_pred             eee----ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec--cCCCCCCe--eEEEeeCCCCCEEEEEE
Q 035558           79 TQL----IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE--SSEPDTPL--VRLGWNKQDPRYMATII  149 (253)
Q Consensus        79 ~~~----~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i--~~~~~~~~~~~~l~~~~  149 (253)
                      ..+    ......+.+++++ ++..|+.+..++.|+.||..+.... .+..  .......-  ..++|+| ++..|+++.
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p-~~g~lyv~d  285 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYF-VDSNFYMSD  285 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEET-TTTEEEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeC-CCCEEEEEe
Confidence            333    1134567888998 5666666777899999999877522 2210  11111122  3899999 544555555


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccc---------------cceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCC
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQ---------------ASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEG  213 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  213 (253)
                      .....|+.|+....   +..+.++.               .....++++|++ +++++-. .+++|+.|++..+...   
T Consensus       286 ~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~---  358 (409)
T 3hrp_A          286 QNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVS---  358 (409)
T ss_dssp             TTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEE---
T ss_pred             CCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEE---
Confidence            44444999987642   33332221               347899999999 5778877 8999999997665421   


Q ss_pred             CCCCeeeccC---------------CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          214 GLDPILAYTA---------------GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       214 ~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                           ...++               -.....+++++++..+++-..++.|+.+.+
T Consensus       359 -----~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          359 -----TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -----EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -----EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                 11111               346889999999876677777888887653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=3.2e-13  Score=114.85  Aligned_cols=197  Identities=9%  Similarity=0.050  Sum_probs=134.1

Q ss_pred             CCeeEEEecCCCCCEEE-----EEeCCCeEEEEeccCceee-eeeecccccEEEEEec-CCCeEEEEeCCCc--------
Q 035558           43 GPLTSFDWNEAEPRRIG-----TSSIDTTCTIWDIEREAVD-TQLIAHDKEVYDIAWG-GVGVFASVSADGS--------  107 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~-----~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~--------  107 (253)
                      ..+.+++|| |++++|+     .|+.+..|++||+.+++.+ ..... ......++|+ +++.|+.++.|..        
T Consensus       121 ~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          121 VSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             EEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             EEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCCccccC
Confidence            568899999 8999988     4444568999999998865 21111 1112678999 9999999988776        


Q ss_pred             -----EEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-C--eEEEEECCCCCCCeeeeccccccee
Q 035558          108 -----VRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-A--KVVVLDIRFPTLPVVELQRHQASVN  178 (253)
Q Consensus       108 -----i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~--~i~~~d~~~~~~~~~~~~~~~~~i~  178 (253)
                           |++|++.++... ..+.....+...+..+.|+| ++++|+..+.++ .  .|.++|..+.  ....+..+...+.
T Consensus       199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~  275 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCE
T ss_pred             CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceE
Confidence                 999999887632 34444444545788999999 888888777665 1  3666665433  2455555666666


Q ss_pred             EEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccC--CCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          179 AIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTA--GAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       179 ~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ...+ +++. +++...   .++.|.+||+.++....     ...+..+  ...+..++|+ ++..+++...++..++|.
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~-----~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS-----WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG-----CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC-----CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            6666 6774 555554   35899999997764210     1233333  5568889998 555566777888888774

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=3.4e-12  Score=97.41  Aligned_cols=216  Identities=11%  Similarity=0.077  Sum_probs=137.7

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |.++.++.+...  .|..|+..++    +. ..+. ..     ..+.+++++ ++++++++ . ++.|.+||.++++...
T Consensus        22 ~~~~~l~~~d~~~~~i~~~d~~~~----~~-~~~~-~~-----~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           22 EVSNSLLFVDIPAKKVCRWDSFTK----QV-QRVT-MD-----APVSSVALR-QSGGYVAT-I-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTC----CE-EEEE-CS-----SCEEEEEEB-TTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCC----cE-EEEe-CC-----CceEEEEEC-CCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence            556777777653  9999998874    22 2232 22     568899999 78885554 4 5679999998776433


Q ss_pred             eeec----ccccEEEEEec-CCCeEEEEeCC---------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558           80 QLIA----HDKEVYDIAWG-GVGVFASVSAD---------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM  145 (253)
Q Consensus        80 ~~~~----~~~~v~~~~~~-~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  145 (253)
                      ....    ....+.++++. +++++++...+         ..-.+|.+........+...   ......++|+| +++.+
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~pngi~~sp-dg~~l  163 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNGLDWSL-DHKIF  163 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEEEEECT-TSCEE
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cccccceEEcC-CCCEE
Confidence            2221    12457889999 88876655322         23455555533322222211   12567899999 88777


Q ss_pred             EEEEeCCCeEEEEECC--CCCC----CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558          146 ATIIMDSAKVVVLDIR--FPTL----PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       146 ~~~~~~~~~i~~~d~~--~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      +++......|..||+.  ++..    ....+..+...+..++++++| ++.++...++.|..||..+++...       .
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~-------~  235 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQ-------T  235 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEE-------E
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEE-------E
Confidence            6655543349999974  3221    112233344567899999999 577777778889999998765332       3


Q ss_pred             eccCCCceeEEEEc-CCCCceEEEE
Q 035558          220 AYTAGAEIEQLQWS-SSQPDWVAIA  243 (253)
Q Consensus       220 ~~~~~~~v~~~~~~-~~~~~~~~~~  243 (253)
                      ...+...+++++|. |+++.|+.++
T Consensus       236 i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          236 VKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EECCCCCceEEEEeCCCCCEEEEEc
Confidence            33445689999998 8877665443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=8.4e-12  Score=94.87  Aligned_cols=222  Identities=9%  Similarity=-0.021  Sum_probs=143.4

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-e
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-Q   80 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~   80 (253)
                      ++.++++.. + .|..|+....    .....+....     ..+.++++. +++.++++...++.|.+||. +++... .
T Consensus        67 ~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~-----~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~  135 (299)
T 2z2n_A           67 DGEVWFTENAANKIGRITKKGI----IKEYTLPNPD-----SAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYE  135 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTTSC----EEEEECSSTT-----CCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred             CCCEEEeCCCCCeEEEECCCCc----EEEEeCCCcC-----CCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEec
Confidence            456666655 4 7888987632    1111122222     568899998 78888887777889999998 454332 2


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      .......+..+++. ++.++++...++.|..||. +++... . ........+..+++++ ++.++++....+. |..||
T Consensus       136 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~-i~~~~  210 (299)
T 2z2n_A          136 LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-F-KIPTPASGPVGITKGN-DDALWFVEIIGNK-IGRIT  210 (299)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEEC
T ss_pred             CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-e-eCCCCCCcceeEEECC-CCCEEEEccCCce-EEEEC
Confidence            22344568899999 8888877777889999998 554222 2 1222334688999998 7776665544556 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      . +..........+...+.++++++++ +++++...++.|..||.. +....      .....+...+.++++ +++..+
T Consensus       211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~------~~~~~~~~~~~~i~~-~~g~l~  280 (299)
T 2z2n_A          211 T-SGEITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSN-NIIEE------YPIQIKSAEPHGICF-DGETIW  280 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEETT-TEEEE------EECSSSSCCEEEEEE-CSSCEE
T ss_pred             C-CCcEEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECCC-CceEE------EeCCCCCCccceEEe-cCCCEE
Confidence            8 4442112223345678999999998 566666678999999983 22111      112244567899999 888755


Q ss_pred             EEEEcCCcEEEEE
Q 035558          240 VAIAFSTKLQILR  252 (253)
Q Consensus       240 ~~~~~~~~i~vw~  252 (253)
                      ++.. .+.+..++
T Consensus       281 v~~~-~~~l~~~~  292 (299)
T 2z2n_A          281 FAME-CDKIGKLT  292 (299)
T ss_dssp             EEET-TTEEEEEE
T ss_pred             EEec-CCcEEEEE
Confidence            5443 56665554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.58  E-value=1.4e-12  Score=101.06  Aligned_cols=218  Identities=8%  Similarity=-0.043  Sum_probs=141.2

Q ss_pred             cEEEEEccCCccccceeeeecC-CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNG-NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA   92 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~   92 (253)
                      .|.++|..++    +....+.. ............+.+.  ++.++++...++.|.+||..+++.+..+. .......++
T Consensus        18 ~l~~~d~~t~----~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~   90 (328)
T 3dsm_A           18 TLSYYDPATC----EVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH   90 (328)
T ss_dssp             EEEEEETTTT----EEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred             eEEEEECCCC----EEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence            9999999886    44333210 0000111345677775  45566666678999999999999888775 346688999


Q ss_pred             ec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--CCCCCeeEEEeeCCCCCEEEEEEe--CCCeEEEEECCCCCCCe
Q 035558           93 WG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS--EPDTPLVRLGWNKQDPRYMATIIM--DSAKVVVLDIRFPTLPV  167 (253)
Q Consensus        93 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~--~~~~i~~~d~~~~~~~~  167 (253)
                      ++ ++..+++...++.|.+||..+.+....+....  ........+++ . ++. ++++..  ++. |.++|+.+.+. +
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~-lyv~~~~~~~~-v~viD~~t~~~-~  165 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKY-VYVNCWSYQNR-ILKIDTETDKV-V  165 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTE-EEEEECTTCCE-EEEEETTTTEE-E
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCE-EEEEcCCCCCE-EEEEECCCCeE-E
Confidence            97 77555555489999999999886443333221  01113456666 2 444 444443  555 99999987653 4


Q ss_pred             eeecccccceeEEEEecCCCCeEEEecCC----------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          168 VELQRHQASVNAIAWAPHSSCHICTAGDD----------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       168 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ..+.. ......++++|+| ++++++..+          +.|.++|..+.+...      .........+..++++|+++
T Consensus       166 ~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~------~~~~~~g~~p~~la~~~d~~  237 (328)
T 3dsm_A          166 DELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK------QFKFKLGDWPSEVQLNGTRD  237 (328)
T ss_dssp             EEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE------EEECCTTCCCEEEEECTTSC
T ss_pred             EEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEE------EEecCCCCCceeEEEecCCC
Confidence            44443 2345788999998 566666554          789999998765321      11122234789999999988


Q ss_pred             ceEEEEcCCcEEEEEC
Q 035558          238 DWVAIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~l  253 (253)
                      .++++..  .+.+|++
T Consensus       238 ~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          238 TLYWINN--DIWRMPV  251 (328)
T ss_dssp             EEEEESS--SEEEEET
T ss_pred             EEEEEcc--EEEEEEC
Confidence            7766544  7777763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.58  E-value=1.6e-12  Score=107.41  Aligned_cols=187  Identities=15%  Similarity=0.073  Sum_probs=139.5

Q ss_pred             CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC--CCCCeeeeeccCCCCC
Q 035558           54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR--DKEHSTIIYESSEPDT  130 (253)
Q Consensus        54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~  130 (253)
                      ...++++...++.|.++|..+++.+..+.. ...+..+.++ +++++++++.|+.|.+||+.  +.+....+..    ..
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G~  240 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----GS  240 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----CS
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----CC
Confidence            345677777889999999999998888774 3456789999 99999999999999999996  5553333322    12


Q ss_pred             CeeEEEee----CCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc----------ccc-ceeEEEEecCCCCeEEEecC
Q 035558          131 PLVRLGWN----KQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR----------HQA-SVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       131 ~i~~~~~~----~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~~~l~~~~~  195 (253)
                      ....++|+    | ++++++++......+.++|..+.+ ++..+..          |.. .+..+..+++++.+++....
T Consensus       241 ~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          241 EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            46789999    6 899999888876669999988765 3544432          112 57788889988667777788


Q ss_pred             CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          196 DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       196 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      +|.|.++|......+.      ............+.|+|+++++++++ .++.|.++++
T Consensus       319 ~g~v~~vd~~~~~~~~------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          319 TGKILLVDYTDLNNLK------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             TTEEEEEETTCSSEEE------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             CCeEEEEecCCCccce------eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence            8999999998754322      22334455677899999999887554 6788988874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.58  E-value=6.3e-13  Score=99.84  Aligned_cols=193  Identities=10%  Similarity=-0.021  Sum_probs=129.1

Q ss_pred             CeeEEEecCCCCCEEE-EEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           44 PLTSFDWNEAEPRRIG-TSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      ...+++++ +++++++ +...++.|.+|+..+.........+...+.++++. +++++++.. ++.|..||........ 
T Consensus        25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-  101 (270)
T 1rwi_B           25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-  101 (270)
T ss_dssp             CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-
T ss_pred             CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-
Confidence            67789999 7888776 44678899999986554332222233567889999 878666655 8899999987664321 


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI  201 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  201 (253)
                      . . ......+..++++| +++++++...++. |.+|+..+... ..........+.+++++|++ +++++...++.|.+
T Consensus       102 ~-~-~~~~~~p~~i~~~~-~g~l~v~~~~~~~-i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~  175 (270)
T 1rwi_B          102 L-P-FDGLNYPEGLAVDT-QGAVYVADRGNNR-VVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVK  175 (270)
T ss_dssp             C-C-CCSCSSEEEEEECT-TCCEEEEEGGGTE-EEEECTTCCSC-EECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEE
T ss_pred             e-e-cCCcCCCcceEECC-CCCEEEEECCCCE-EEEEECCCcee-EeeccccCCCceeEEEeCCC-CEEEEECCCCEEEE
Confidence            1 1 12223688999999 7876666555666 99997655332 22222233467889999998 57777777899999


Q ss_pred             EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ||........       ....+...+.++++++++..+++...++.|.+|+
T Consensus       176 ~~~~~~~~~~-------~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          176 LEAESNNQVV-------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             ECTTTCCEEE-------CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             EecCCCceEe-------ecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence            9987654221       1122336788999999996555666678888886

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=1.9e-11  Score=92.90  Aligned_cols=223  Identities=8%  Similarity=-0.061  Sum_probs=146.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceee-eecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKS-LLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-   79 (253)
                      ++.+.++.. + .|.+|+.. +    +... .+....     ..+.++++. ++++++++...++.|..+|.. ++... 
T Consensus        30 ~g~l~v~~~~~~~v~~~~~~-~----~~~~~~~~~~~-----~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~~~   97 (300)
T 2qc5_A           30 DGKVWFTQHKANKISSLDQS-G----RIKEFEVPTPD-----AKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFTEY   97 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-S----CEEEEECSSTT-----CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CCCEEEEcCCCCeEEEECCC-C----ceEEEECCCCC-----CcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence            456666654 4 89999887 3    2222 122222     568899998 788877777667899999988 55322 


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      .+......+.++++. +++++++...++.|..+|.. ++.. .. ........+..+++.+ +++++++...++. |..+
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~-~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~-i~~~  172 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY-DLPNKGSYPAFITLGS-DNALWFTENQNNS-IGRI  172 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE-ECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEE
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec-cCCCCCCCceeEEECC-CCCEEEEecCCCe-EEEE
Confidence            222234678899999 88888877778899999987 4422 11 1222334788999998 7775555444555 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      |. +..........+...+..+++++++ .++++....+.|.+|+. .+....      .....+...+.++++.+++..
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~------~~~~~~~~~~~~i~~d~~g~l  243 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEISE------YDIPTPNARPHAITAGKNSEI  243 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEE------EECSSTTCCEEEEEECSTTCE
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEEE------EECCCCCCCceEEEECCCCCE
Confidence            98 3332111222334568899999998 57777667788999998 333111      112234567889999999985


Q ss_pred             eEEEEcCCcEEEEE
Q 035558          239 WVAIAFSTKLQILR  252 (253)
Q Consensus       239 ~~~~~~~~~i~vw~  252 (253)
                      +++...++.|..++
T Consensus       244 ~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          244 WFTEWGANQIGRIT  257 (300)
T ss_dssp             EEEETTTTEEEEEC
T ss_pred             EEeccCCCeEEEEC
Confidence            55555567787775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=1.6e-13  Score=107.50  Aligned_cols=164  Identities=11%  Similarity=0.086  Sum_probs=119.0

Q ss_pred             CceEEeecC-cEEEEEccCCcc-------ccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce
Q 035558            5 PDLLATSSD-FLRVWRISDEDR-------RVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA   76 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   76 (253)
                      ..++++|+. .+.+|++....+       ..+... ...+.     . |+.++|   +++.|+++ .++.|++||+.+..
T Consensus        49 ~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp-----~-V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~  117 (388)
T 1xip_A           49 KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKW-EKEIP-----D-VIFVCF---HGDQVLVS-TRNALYSLDLEELS  117 (388)
T ss_dssp             TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSE-EEECT-----T-EEEEEE---ETTEEEEE-ESSEEEEEESSSTT
T ss_pred             CCEEEEeCCCEEEEEEhhHhhhhhccccccccceE-EeeCC-----C-eeEEEE---CCCEEEEE-cCCcEEEEEchhhh
Confidence            445666664 888999875410       011111 12243     6 999999   68899988 78999999998777


Q ss_pred             eeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           77 VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      .......|..++.++.+..++ ++++..||.|.+||+.+.....       ....|++++|+| .|  ++.+..||. ++
T Consensus       118 ~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp-kG--~~vg~~dg~-i~  185 (388)
T 1xip_A          118 EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN-SQ--LAVLLKDRS-FQ  185 (388)
T ss_dssp             CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-SE--EEEEETTSC-EE
T ss_pred             ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-Cc--eEEEEcCCc-EE
Confidence            666666788889888887222 8889999999999999776422       123899999999 66  677888888 99


Q ss_pred             EEECCCCCCC-eeee------c---ccccceeEEEEecCCCCeEEE
Q 035558          157 VLDIRFPTLP-VVEL------Q---RHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       157 ~~d~~~~~~~-~~~~------~---~~~~~i~~~~~~~~~~~~l~~  192 (253)
                      +|+....... ...+      .   +|...|.++.|.+++ .+|++
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~  230 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV  230 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence            9988764411 2334      2   367889999999988 57765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=1.3e-12  Score=98.62  Aligned_cols=180  Identities=9%  Similarity=-0.066  Sum_probs=129.6

Q ss_pred             CCCEEEEEeCCCeEEEEeccCceeeeeeeccc-ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCC
Q 035558           54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD-KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTP  131 (253)
Q Consensus        54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  131 (253)
                      .+++|++++.++.|++||.++++.+..+..+. ..+.++.+. ++++++  +.++.|..||. +++....+..  .....
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~~~   78 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA--PAGCE   78 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTTCE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCCcc
Confidence            36789999999999999999999999888765 468889999 888888  45778999998 6653332222  11236


Q ss_pred             eeEEEeeCCCCCEEEEEEe-CCCeEEEEECCCCCCCeeeec------ccccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558          132 LVRLGWNKQDPRYMATIIM-DSAKVVVLDIRFPTLPVVELQ------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       132 i~~~~~~~~~~~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                      +.++.+.| +++++++.+. ++. +..+|. +++ .+..+.      .+......+++.++| .++++...++.|..||.
T Consensus        79 ~~~~~~~~-dG~~lv~~~~~~~~-v~~vd~-~Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           79 MQTARILP-DGNALVAWCGHPST-ILEVNM-KGE-VLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAP  153 (276)
T ss_dssp             EEEEEECT-TSCEEEEEESTTEE-EEEECT-TSC-EEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECT
T ss_pred             ccccEECC-CCCEEEEecCCCCE-EEEEeC-CCC-EEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECC
Confidence            78889999 8999888776 544 777775 333 233332      222345567889999 69999999999999998


Q ss_pred             cCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          205 SSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      . ++..        ........+.++...+++..+++...++.|..++
T Consensus       154 ~-G~~~--------w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d  192 (276)
T 3no2_A          154 N-GQLL--------NSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLN  192 (276)
T ss_dssp             T-SCEE--------EEEECSSCCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred             C-CCEE--------EEEECCCCccceeEcCCCCEEEEeCCCCeEEEEe
Confidence            7 6532        2222234566788889988677766666776664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.51  E-value=9.5e-11  Score=92.22  Aligned_cols=211  Identities=10%  Similarity=0.021  Sum_probs=129.0

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .|.++|..++    +.+..+....     .+  .+.++ |++++++.+.          .++.|.+||..+.+.+..+..
T Consensus        48 ~v~v~D~~t~----~~~~~i~~g~-----~p--~i~~s-pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~  115 (373)
T 2mad_H           48 QQWVLDAGSG----SILGHVNGGF-----LP--NPVAA-HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL  115 (373)
T ss_pred             EEEEEECCCC----eEEEEecCCC-----CC--CeEEC-CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC
Confidence            6799999886    6666665543     44  89999 8999888875          367899999998887766542


Q ss_pred             c-------cccEEEEEec-CCCeEEEEeC--CCcEEEEEcCCCCCeee-eeccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558           84 H-------DKEVYDIAWG-GVGVFASVSA--DGSVRVFDLRDKEHSTI-IYESSEPDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus        84 ~-------~~~v~~~~~~-~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      .       ......+.++ ++++|+++..  ++.|.++| .+++.... +..   ..    ++.+.|.....+++.+.++
T Consensus       116 ~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---~~----~~~~~~~~~~~~~~~~~dg  187 (373)
T 2mad_H          116 PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---PT----CYHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---Cc----eEEEEeCCCceEEEEcCCC
Confidence            2       1234578999 9999998874  57899999 88764433 211   00    1122221112222222222


Q ss_pred             C----------------------------------------------eEEEEECCCCCCC-eeeecc----------ccc
Q 035558          153 A----------------------------------------------KVVVLDIRFPTLP-VVELQR----------HQA  175 (253)
Q Consensus       153 ~----------------------------------------------~i~~~d~~~~~~~-~~~~~~----------~~~  175 (253)
                      .                                              .+.+.|+...... +..+..          ...
T Consensus       188 ~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~  267 (373)
T 2mad_H          188 GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG  267 (373)
T ss_pred             CEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecC
Confidence            2                                              1444554332110 111100          011


Q ss_pred             ceeEEEEecCCCCeEEEecC----------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEE-
Q 035558          176 SVNAIAWAPHSSCHICTAGD----------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIA-  243 (253)
Q Consensus       176 ~i~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-  243 (253)
                      ....++++|++. .++++..          ++.|.++|+.+.+...        ..........++|+|+++ .++++. 
T Consensus       268 g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~--------~i~~g~~p~~i~~s~Dg~~~l~v~~~  338 (373)
T 2mad_H          268 GWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS--------QISLGHDVDAISVAQDGGPDLYALSA  338 (373)
T ss_pred             ceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEE--------EEECCCCcCeEEECCCCCeEEEEEcC
Confidence            233477888884 5555432          3579999998876432        223344688999999998 666666 


Q ss_pred             cCCcEEEEEC
Q 035558          244 FSTKLQILRV  253 (253)
Q Consensus       244 ~~~~i~vw~l  253 (253)
                      .++.|.++++
T Consensus       339 ~~~~V~ViD~  348 (373)
T 2mad_H          339 GTEVLHIYDA  348 (373)
T ss_pred             CCCeEEEEEC
Confidence            5899999874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=7.7e-12  Score=107.13  Aligned_cols=197  Identities=12%  Similarity=0.076  Sum_probs=129.8

Q ss_pred             CCeeEEEecCCCCCEEEEEeCC-----CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCc---------
Q 035558           43 GPLTSFDWNEAEPRRIGTSSID-----TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGS---------  107 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~---------  107 (253)
                      ..+..++|+ |++++|+.+..+     ..|++||+.+++.+... .+...+..++|+ + +.|+.++.++.         
T Consensus       163 ~~~~~~~~S-PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          163 TALDAWAAS-DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEEEC-TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEEEeEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            368899999 899988877543     36999999998865431 122223578999 8 88888877654         


Q ss_pred             -----EEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCCC-eeeecccccc
Q 035558          108 -----VRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTLP-VVELQRHQAS  176 (253)
Q Consensus       108 -----i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~~-~~~~~~~~~~  176 (253)
                           |++|++.++... ..+.....+...+..+.|+| ++++|+..+.++    ..|++||+.++... ...+..+...
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                 889999776532 23444333333588999999 898888877643    24999999875212 3445445544


Q ss_pred             eeEEEEecCCCCeEEEecC----CCcEEEEeccCCC-CCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          177 VNAIAWAPHSSCHICTAGD----DSQALIWDLSSMG-QPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       177 i~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      ..... +|++. .|+..+.    ++.|.+||+.++. ...      .....+...+.+++|+ .+..+++...++..++|
T Consensus       319 ~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~------~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          319 QWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFD------TVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             CEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEE------EEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred             eEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccE------EEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence            44443 48884 6655554    3559999987642 111      1233445567778887 44445567778877776


Q ss_pred             E
Q 035558          252 R  252 (253)
Q Consensus       252 ~  252 (253)
                      .
T Consensus       390 ~  390 (741)
T 1yr2_A          390 A  390 (741)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.49  E-value=1.1e-10  Score=88.59  Aligned_cols=221  Identities=11%  Similarity=-0.022  Sum_probs=141.7

Q ss_pred             CCceEEeec-C-cEEEEEccCCcccccee-eeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELK-SLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-   79 (253)
                      ++.+.++.. + .|..+|.. +    +.. ..+....     ..+.++++. ++++++++...++.|..+|.. ++... 
T Consensus        72 ~g~l~v~~~~~~~v~~~d~~-g----~~~~~~~~~~~-----~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~  139 (300)
T 2qc5_A           72 LGDIWFTENGANKIGKLSKK-G----GFTEYPLPQPD-----SGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYEY  139 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-S----CEEEEECSSTT-----CCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CCCEEEEecCCCeEEEECCC-C----CeEEecCCCCC-----CCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEEc
Confidence            455666655 4 78888877 3    222 1122222     468899998 788888777668899999987 55432 


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      .+......+..+++. +++++++...++.|..+|. +++.. .. ........+..+++++ ++++.++....+. |.+|
T Consensus       140 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~-~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~-i~~~  214 (300)
T 2qc5_A          140 DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EY-PLPTNAAAPVGITSGN-DGALWFVEIMGNK-IGRI  214 (300)
T ss_dssp             ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EE-ECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEE
T ss_pred             cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-Ee-eCCCCCCCcceEEECC-CCCEEEEccCCCE-EEEE
Confidence            222234578899998 8887777766888999998 44422 22 2222334688999998 7776665544555 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      |. +.......+..+...+.++++++++ +++++...++.|..||.. +....      .........+.++++.+++..
T Consensus       215 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~~~------~~~~~~~~~~~~i~~~~~g~l  285 (300)
T 2qc5_A          215 TT-TGEISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITND-NTIQE------YQLQTENAEPHGITFGKDGSV  285 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEE------EECCSTTCCCCCEEECTTSCE
T ss_pred             cC-CCcEEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECCC-CcEEE------EECCccCCccceeEeCCCCCE
Confidence            98 3332112223345668899999998 566666677999999983 32111      112223466889999999874


Q ss_pred             eEEEEcCCcEEEEE
Q 035558          239 WVAIAFSTKLQILR  252 (253)
Q Consensus       239 ~~~~~~~~~i~vw~  252 (253)
                      +++ +.. .|..++
T Consensus       286 ~v~-~~~-~i~~~~  297 (300)
T 2qc5_A          286 WFA-LKC-KIGKLN  297 (300)
T ss_dssp             EEE-CSS-EEEEEE
T ss_pred             EEE-ccC-ceEEeC
Confidence            444 434 555554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.48  E-value=9.6e-12  Score=106.56  Aligned_cols=225  Identities=10%  Similarity=0.001  Sum_probs=138.8

Q ss_pred             CCCceEEeec-----C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCe---------
Q 035558            3 QKPDLLATSS-----D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTT---------   66 (253)
Q Consensus         3 ~~~~~l~~~~-----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---------   66 (253)
                      ++|++||.+.     +  .|++||+.++    +.+.. ..+.     ..+..++|+ ++ +.|+.++.++.         
T Consensus       172 PDG~~la~~~~~~G~e~~~i~v~dl~tg----~~~~~-~~~~-----~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          172 DDGRLLAYSVQDGGSDWRTVKFVGVADG----KPLAD-ELKW-----VKFSGLAWL-GN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             TTSSEEEEEEEETTCSEEEEEEEETTTC----CEEEE-EEEE-----EESCCCEES-TT-SEEEEEECCCC--------C
T ss_pred             CCCCEEEEEEcCCCCceEEEEEEECCCC----CCCCc-cCCC-----ceeccEEEE-CC-CEEEEEEecCcccccccccC
Confidence            3556665543     2  6999999986    33322 1111     223578999 77 88887776554         


Q ss_pred             -----EEEEeccCcee----eeeeecccccEEEEEec-CCCeEEEEeCCC-----cEEEEEcCCC--CCeeeeeccCCCC
Q 035558           67 -----CTIWDIEREAV----DTQLIAHDKEVYDIAWG-GVGVFASVSADG-----SVRVFDLRDK--EHSTIIYESSEPD  129 (253)
Q Consensus        67 -----i~vwd~~~~~~----~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~~  129 (253)
                           |++|++.++..    +.....+...+..+.|+ ++++|+..+.++     .|++||+.++  +....+....   
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---  316 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL---  316 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS---
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC---
Confidence                 89999876652    22222233458899999 999888877544     7999999876  3123333221   


Q ss_pred             CCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEecc
Q 035558          130 TPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS  205 (253)
Q Consensus       130 ~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~  205 (253)
                      ....... .| +++.|+..+.++   ..|.+||+.+.. .....+..+...+..+.+. ++ .++++...|+..+||.+.
T Consensus       317 ~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          317 KAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEE
T ss_pred             CceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEe
Confidence            1333333 46 777777766532   249999987642 2233344445556777887 33 588888899988888765


Q ss_pred             C-CCCCCCCCCCCeeec-cCCCceeEEEEcCCCCceEEE-E---cCCcEEEEEC
Q 035558          206 S-MGQPVEGGLDPILAY-TAGAEIEQLQWSSSQPDWVAI-A---FSTKLQILRV  253 (253)
Q Consensus       206 ~-~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~-~---~~~~i~vw~l  253 (253)
                      . +...       ..+. .+...+..++++|+++.++.. +   ..+.+.+|++
T Consensus       393 ~~g~~~-------~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          393 LDGKPA-------GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             TTSCEE-------EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCce-------eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            2 2211       1222 246678999999998766532 2   2256777764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.47  E-value=2e-10  Score=88.77  Aligned_cols=213  Identities=5%  Similarity=-0.055  Sum_probs=132.0

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |+++.++.+...  .|..|+..++    +. ..+. ..     ..+.++.|+ ++++++++. .+ .|.+||..+++...
T Consensus        58 ~~~~~l~~~d~~~~~i~~~d~~~~----~~-~~~~-~~-----~~v~~i~~~-~dg~l~v~~-~~-gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           58 PASGTAWWFNILERELHELHLASG----RK-TVHA-LP-----FMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLTL  123 (326)
T ss_dssp             TTTTEEEEEEGGGTEEEEEETTTT----EE-EEEE-CS-----SCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCC----cE-EEEE-CC-----CcceEEEEe-CCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence            555667777653  8999998774    22 2222 22     568899999 778776654 44 49999998776432


Q ss_pred             eeec----ccccEEEEEec-CCCeEEEEeC------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           80 QLIA----HDKEVYDIAWG-GVGVFASVSA------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        80 ~~~~----~~~~v~~~~~~-~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      ....    ....+.+++++ +++++++...      .+.|..++  +++ ...+..   .......++|+| +++.++.+
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~---~~~~~~~i~~s~-dg~~lyv~  196 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFA---DISIPNSICFSP-DGTTGYFV  196 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEE---EESSEEEEEECT-TSCEEEEE
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeC---CCcccCCeEEcC-CCCEEEEE
Confidence            2211    12468899999 8887665542      23455555  332 222211   112567899999 88777666


Q ss_pred             EeCCCeEEEEECC--CC-CC----CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558          149 IMDSAKVVVLDIR--FP-TL----PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY  221 (253)
Q Consensus       149 ~~~~~~i~~~d~~--~~-~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  221 (253)
                      ......|.+||+.  ++ ..    ....+......+..++++++| .+.++...++.|..||.. ++..       ....
T Consensus       197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~-g~~~-------~~i~  267 (326)
T 2ghs_A          197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-GNHI-------ARYE  267 (326)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-CCEE-------EEEE
T ss_pred             ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC-CCEE-------EEEE
Confidence            5443349999986  33 21    111222234567889999998 566666567889999873 3321       1333


Q ss_pred             cCCCceeEEEEc-CCCCceEEEEc
Q 035558          222 TAGAEIEQLQWS-SSQPDWVAIAF  244 (253)
Q Consensus       222 ~~~~~v~~~~~~-~~~~~~~~~~~  244 (253)
                      .+...+.+++|+ |++..++.++.
T Consensus       268 ~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          268 VPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCCcEEEEEecCCCCEEEEEec
Confidence            445679999998 88776654443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.46  E-value=2.1e-10  Score=87.52  Aligned_cols=200  Identities=11%  Similarity=0.068  Sum_probs=127.7

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      -.-+..|+|.++.++++...++.|+.||..+++. ..+. ....+.+++++ +++++++ . ++.|.+||..+++.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            3457889955677778877889999999987764 2232 45678999999 8885554 3 567999999876532222


Q ss_pred             eccC-CCCCCeeEEEeeCCCCCEEEEEEeC---------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEE
Q 035558          123 YESS-EPDTPLVRLGWNKQDPRYMATIIMD---------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       123 ~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  192 (253)
                      .... .....+..++++| +++++++....         .. -.+|.+..... ...+..+....+.++|+|++..++++
T Consensus        90 ~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~-~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQ-GALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             ECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTC-EEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred             ecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCC-cEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEe
Confidence            2111 1223578899999 88866654332         12 34554443222 33344444567899999999434466


Q ss_pred             ecCCCcEEEEecc--CCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          193 AGDDSQALIWDLS--SMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       193 ~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .+.++.|.+|++.  ++....  .........+...+..+++.++|..+++...++.|..|+
T Consensus       167 ~~~~~~i~~~~~d~~~G~~~~--~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          167 DSLSYSVDAFDYDLQTGQISN--RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD  226 (297)
T ss_dssp             EGGGTEEEEEEECTTTCCEEE--EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred             cCCCCcEEEEeccCCCCcccC--cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence            6778999999974  332100  000011112345788999999998777777777788875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.46  E-value=5.2e-11  Score=94.89  Aligned_cols=194  Identities=9%  Similarity=-0.032  Sum_probs=131.3

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC--cEEEEEcCCCCCe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG--SVRVFDLRDKEHS  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~  119 (253)
                      .....++|+ ++++++++...++.|++||.++++........ .... ++|+ +++.|+++..++  .|.+++.......
T Consensus       131 ~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            357789999 78888887777899999999887765544432 2334 8999 888888888766  7889988766543


Q ss_pred             eeeeccCC-CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee-----cccccce--eEEEEecCCCCeEE
Q 035558          120 TIIYESSE-PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL-----QRHQASV--NAIAWAPHSSCHIC  191 (253)
Q Consensus       120 ~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~i--~~~~~~~~~~~~l~  191 (253)
                      ..+..... ....+.+++++| ++..|+++..++. |+.||..+..  ...+     .++...-  ..++|+|++..+++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~-I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKN-FGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCE-EEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCc-EEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            33311111 234678899999 4445555665565 9999998654  2222     1122222  39999996436777


Q ss_pred             EecCCCcEEEEeccCCCCCCCCCCCCeeeccC---------------CCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558          192 TAGDDSQALIWDLSSMGQPVEGGLDPILAYTA---------------GAEIEQLQWSSSQPDWVAIA-FSTKLQILR  252 (253)
Q Consensus       192 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~  252 (253)
                      +-..++.|+.|+......         ...++               -.....++++|++..+++-. .++.|+.|+
T Consensus       284 ~d~~~~~I~~~~~~g~~~---------~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGECE---------WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             EETTTTEEEEECTTCCEE---------EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             EeCCCCEEEEEecCCCEE---------EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            777889999998764311         11111               24578999999998666666 778888886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.43  E-value=1.2e-10  Score=89.19  Aligned_cols=200  Identities=7%  Similarity=-0.066  Sum_probs=127.9

Q ss_pred             CCeeEEEecCCCCCEEEE-------EeCCCeEEEEeccCceeeeeee----cccccEEEEEec-C-CCeEEEEeCCCcEE
Q 035558           43 GPLTSFDWNEAEPRRIGT-------SSIDTTCTIWDIEREAVDTQLI----AHDKEVYDIAWG-G-VGVFASVSADGSVR  109 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~-~-~~~l~~~~~dg~i~  109 (253)
                      ....+++|+ +++.++++       +..++.|.+||..+++......    ++...+.++++. + ++++++.. .+.|.
T Consensus        18 ~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           18 PGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             TTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             CCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            356789999 78888777       5678899999987776432211    144678899998 7 65555544 44789


Q ss_pred             EEEcCCCCCeee-eecc-CCCCCCeeEEEeeCCCCCEEEEEEeC---------------CCeEEEEECCCCCCCeeeecc
Q 035558          110 VFDLRDKEHSTI-IYES-SEPDTPLVRLGWNKQDPRYMATIIMD---------------SAKVVVLDIRFPTLPVVELQR  172 (253)
Q Consensus       110 i~d~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~---------------~~~i~~~d~~~~~~~~~~~~~  172 (253)
                      +||.. ++.... .... ......+..+++++ +++++++...+               +. |..+|.. .+  ...+..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~-g~--~~~~~~  169 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGS-IYCFTTD-GQ--MIQVDT  169 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEE-EEEECTT-SC--EEEEEE
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCe-EEEECCC-CC--EEEecc
Confidence            99988 542211 1111 11123578999999 78777766544               34 7777765 22  333333


Q ss_pred             cccceeEEEEe----cCCCCeEEEecCCCcEEEEecc-CCCCCCCCCCCCeeeccCC-CceeEEEEcCCCCceEEEEcCC
Q 035558          173 HQASVNAIAWA----PHSSCHICTAGDDSQALIWDLS-SMGQPVEGGLDPILAYTAG-AEIEQLQWSSSQPDWVAIAFST  246 (253)
Q Consensus       173 ~~~~i~~~~~~----~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  246 (253)
                      +......++|+    |++..++++...++.|.+||+. .+....  .........+. ..+..+++++++..+++...++
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE--EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc--ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence            44556889999    9984234555678999999986 222100  00001122233 5688999999998777777788


Q ss_pred             cEEEEE
Q 035558          247 KLQILR  252 (253)
Q Consensus       247 ~i~vw~  252 (253)
                      .|.+|+
T Consensus       248 ~i~~~d  253 (314)
T 1pjx_A          248 HIEVFG  253 (314)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            898886

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.43  E-value=2.5e-11  Score=103.19  Aligned_cols=199  Identities=15%  Similarity=0.142  Sum_probs=129.3

Q ss_pred             CCeeEEEecCCCCCEEEEE-----eCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCc----------
Q 035558           43 GPLTSFDWNEAEPRRIGTS-----SIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGS----------  107 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~----------  107 (253)
                      ..+..++|| |++++|+-+     +....|++||+++++.+.... +......++|++++.|+.++.+..          
T Consensus       129 ~~l~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~  206 (693)
T 3iuj_A          129 TALDQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWLGNEGFFYSSYDKPDGSELSARTD  206 (693)
T ss_dssp             CEEEEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEETTTEEEEEESSCCC-------CC
T ss_pred             EEEEEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEeCCCEEEEEEecCcccccccccCC
Confidence            568889999 899988743     333579999999988554311 111124567876777877777643          


Q ss_pred             ---EEEEEcCCCCCe-eeeeccCC-CCCCeeEEEeeCCCCCEEEEEEeCC---CeEEEEECCCCCCCeeeecccccceeE
Q 035558          108 ---VRVFDLRDKEHS-TIIYESSE-PDTPLVRLGWNKQDPRYMATIIMDS---AKVVVLDIRFPTLPVVELQRHQASVNA  179 (253)
Q Consensus       108 ---i~i~d~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~i~~  179 (253)
                         |++|++.+.... ..+..... +......+.|+| ++++|+.....+   ..|+++|+.+.......+..+......
T Consensus       207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~  285 (693)
T 3iuj_A          207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS  285 (693)
T ss_dssp             CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred             CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence               999999876532 23444433 344578899999 888776655432   259999998765445666666665555


Q ss_pred             EEEecCCCCeEEEecCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC---cEEEEE
Q 035558          180 IAWAPHSSCHICTAGDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST---KLQILR  252 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~vw~  252 (253)
                      . +++++.++++....+   +.|..+|+.++....     ...+..|...+.  .|+++++.++....++   .|++|+
T Consensus       286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~-----~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH-----WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-----CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-----cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            5 667775555665554   678899988764311     123445555554  8899988777655544   466665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.37  E-value=2.7e-10  Score=89.97  Aligned_cols=231  Identities=10%  Similarity=0.030  Sum_probs=140.1

Q ss_pred             CCceEEe-ecC--cEEEEEccCCccccceeeeecCCC---CccccCCeeEEEecCCCCCEEEEEeCC------CeEEEEe
Q 035558            4 KPDLLAT-SSD--FLRVWRISDEDRRVELKSLLNGNK---NSEYCGPLTSFDWNEAEPRRIGTSSID------TTCTIWD   71 (253)
Q Consensus         4 ~~~~l~~-~~~--~v~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd   71 (253)
                      ++++|.. +..  .|.++|+.+....++..++++..+   .... ..-..+... +++ +++++..+      |.|.+.|
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            4455555 443  999999975434456666663100   0000 133456677 777 77776665      7899999


Q ss_pred             ccCceeeeeeeccc---ccEEEEEec-CCCeEEEEe-------------------CCCcEEEEEcCCCCCeeeeeccCCC
Q 035558           72 IEREAVDTQLIAHD---KEVYDIAWG-GVGVFASVS-------------------ADGSVRVFDLRDKEHSTIIYESSEP  128 (253)
Q Consensus        72 ~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~  128 (253)
                      .++.+.+..+....   ..-.++-|+ +++.+++..                   .+.+|.+||+.+.+....+.... .
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~  249 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-E  249 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-T
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-C
Confidence            99999888876222   223457778 888887774                   37899999999875444333221 1


Q ss_pred             CCCeeEEEe--eCCCCCEEEEEEe-----CCCeEEEEECCCCCC-Ceee--ecc----------------cccceeEEEE
Q 035558          129 DTPLVRLGW--NKQDPRYMATIIM-----DSAKVVVLDIRFPTL-PVVE--LQR----------------HQASVNAIAW  182 (253)
Q Consensus       129 ~~~i~~~~~--~~~~~~~l~~~~~-----~~~~i~~~d~~~~~~-~~~~--~~~----------------~~~~i~~~~~  182 (253)
                      ......+.|  +| +++++.+++.     ....|.+|....+.. ..+.  +..                -......+.+
T Consensus       250 g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          250 NRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             EEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence            123445555  99 8888888776     554487665443210 0010  000                0234678999


Q ss_pred             ecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeeecc-------C------CCceeEEEEcCCCCceEEEE
Q 035558          183 APHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILAYT-------A------GAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       183 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~------~~~v~~~~~~~~~~~~~~~~  243 (253)
                      +||+ ++|+++. ..+.|.+||+.....+...   -....+       |      ......++++|+|++++++.
T Consensus       329 S~DG-rfLYVSnrg~d~VavfdV~d~~~~~lv---~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          329 SLDD-KFLYLSLWGIGEVRQYDISNPFKPVLT---GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CTTS-CEEEEEETTTTEEEEEECSSTTSCEEE---EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCC-CEEEEEeCCCCEEEEEEecCCCCcEEE---EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999 5665554 5799999999754322200   001111       0      11368899999999888776

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=2.6e-10  Score=88.76  Aligned_cols=228  Identities=9%  Similarity=0.025  Sum_probs=140.4

Q ss_pred             CCceEEeec---C-cEEEEEccCCccccceeeeecC--CCCccccCCeeEEEecCCCCCEEEEEeC-----CCeEEEEec
Q 035558            4 KPDLLATSS---D-FLRVWRISDEDRRVELKSLLNG--NKNSEYCGPLTSFDWNEAEPRRIGTSSI-----DTTCTIWDI   72 (253)
Q Consensus         4 ~~~~l~~~~---~-~v~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~vwd~   72 (253)
                      +++++++..   + .++||.++.+    +. ..+..  +....+-..+.++++. ++++++++-..     ++.|.+||+
T Consensus        27 ~g~~~v~~~~~~~~~~~l~~~~~g----~~-~~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~i~~~d~  100 (343)
T 2qe8_A           27 DGRLFLSLHQFYQPEMQVAELTQD----GL-IPFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPKLVAWDT  100 (343)
T ss_dssp             TSCEEEEECGGGCCSCSEEEEETT----EE-EESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECHHHHTSCCEEEEEET
T ss_pred             CCCEEEEeCCCCCCceEEEEECCC----Ce-ecCCCcccCcccceeEeeEEEEc-CCCcEEEEcCCCCcCCCCeEEEEEC
Confidence            567777753   1 3677777643    22 21111  1111112678999999 77776665433     578999999


Q ss_pred             cCceeeeeeecc------cccEEEEEec-CCC-eEEEEe---CCCcEEEEEcCCCCCeeeeec--cC----------C--
Q 035558           73 EREAVDTQLIAH------DKEVYDIAWG-GVG-VFASVS---ADGSVRVFDLRDKEHSTIIYE--SS----------E--  127 (253)
Q Consensus        73 ~~~~~~~~~~~~------~~~v~~~~~~-~~~-~l~~~~---~dg~i~i~d~~~~~~~~~~~~--~~----------~--  127 (253)
                      .+++.+..+...      ...+..+++. ++. .+++-.   .++.|.+||+.+++....+..  ..          +  
T Consensus       101 ~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~  180 (343)
T 2qe8_A          101 LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP  180 (343)
T ss_dssp             TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEE
T ss_pred             CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEE
Confidence            988866655421      2356889998 544 445554   678999999987653332211  00          0  


Q ss_pred             ------------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC---CCCC----e--eeecccccceeEEEEecCC
Q 035558          128 ------------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF---PTLP----V--VELQRHQASVNAIAWAPHS  186 (253)
Q Consensus       128 ------------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~----~--~~~~~~~~~i~~~~~~~~~  186 (253)
                                  ....+..++|+| +++.|+++...+..+..++...   ....    .  ....++......++++++|
T Consensus       181 ~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G  259 (343)
T 2qe8_A          181 VQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH  259 (343)
T ss_dssp             CBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC
T ss_pred             EEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC
Confidence                        012367899999 8888888887775577776431   1100    0  0112334456789999998


Q ss_pred             CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558          187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                       +++++...++.|.+||..+++...      .....+...+.++++.+++..+++.+..
T Consensus       260 -~l~va~~~~~~V~~~d~~~G~~~~------~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          260 -NIYVGDLAHSAIGVITSADRAYKL------LVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             -CEEEEEGGGTEEEEEETTTTEEEE------EEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             -CEEEEccCCCeEEEEECCCCCEEE------EEECCceecCCeeEECCCCcEEEEeCcc
Confidence             688888889999999984443111      1111234568999999998766665533

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.36  E-value=3.9e-10  Score=86.30  Aligned_cols=214  Identities=8%  Similarity=-0.012  Sum_probs=130.3

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |+...++.+...  .|..|+...     + ...+..+.     ..+..++++ ++++++++...++.|.+|+.. ++...
T Consensus        54 ~~g~~l~~~d~~~~~i~~~~~~g-----~-~~~~~~~~-----~~~~gl~~d-~dG~l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           54 EAQRTLVWSDLVGRRVLGWREDG-----T-VDVLLDAT-----AFTNGNAVD-AQQRLVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             GGGTEEEEEETTTTEEEEEETTS-----C-EEEEEESC-----SCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCCEEEEEECCCCEEEEEeCCC-----C-EEEEeCCC-----CccceeeEC-CCCCEEEEECCCCEEEEECCC-CCEEE
Confidence            333336666553  888898743     2 23344444     568899999 788877665566789999986 54322


Q ss_pred             eeecc----cccEEEEEec-CCCeEEE----EeC-------------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe
Q 035558           80 QLIAH----DKEVYDIAWG-GVGVFAS----VSA-------------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW  137 (253)
Q Consensus        80 ~~~~~----~~~v~~~~~~-~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~  137 (253)
                      .....    ...+.++++. +++++++    |..             .+.|..+|..+++..... .    ......++|
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~----~~~p~gl~~  195 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D----LDHPNGLAF  195 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E----ESSEEEEEE
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c----CCCCcceEE
Confidence            11111    1346789999 8888876    332             245777777666533322 1    125678999


Q ss_pred             eCCCCCEEEEEEeCC-----CeEEEEECCCCCCC-eeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          138 NKQDPRYMATIIMDS-----AKVVVLDIRFPTLP-VVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       138 ~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      +| +++.|+++....     ..|.+||+...... ...+ .........++++++| + |.++..+ .|.+|+... +..
T Consensus       196 sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g-~~~  270 (305)
T 3dr2_A          196 SP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDG-QLL  270 (305)
T ss_dssp             CT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS-C-EEECCSS-EEEEECTTS-CEE
T ss_pred             cC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC-C-EEEecCC-cEEEECCCC-CEE
Confidence            99 888777776651     34999998753200 0111 1123345678999998 4 5455545 499998743 211


Q ss_pred             CCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCC
Q 035558          211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFST  246 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  246 (253)
                              ........+.+++|+|+++.|..++.++
T Consensus       271 --------~~~~~~~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          271 --------GHIPTPGTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             --------EEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred             --------EEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence                    1222223588999999887666666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.35  E-value=2.5e-10  Score=90.71  Aligned_cols=217  Identities=12%  Similarity=0.039  Sum_probs=136.7

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .|.++|..+.    +.+..+..-.     .+  .+.++ +++++++.+.          .++.|.++|..+++.+..+.-
T Consensus       100 ~VsVID~~t~----~vv~~I~vG~-----~P--gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v  167 (426)
T 3c75_H          100 QQFVIDGSTG----RILGMTDGGF-----LP--HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL  167 (426)
T ss_dssp             EEEEEETTTT----EEEEEEEECS-----SC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             eEEEEECCCC----EEEEEEECCC-----CC--ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence            7999999887    7777777554     45  89999 8888887775          467899999999998877652


Q ss_pred             c-------cccEEEEEec-CCCeEEEEeC--CCcEEEEEcCCCCCeeeeeccCC----CCCCeeEEE-------------
Q 035558           84 H-------DKEVYDIAWG-GVGVFASVSA--DGSVRVFDLRDKEHSTIIYESSE----PDTPLVRLG-------------  136 (253)
Q Consensus        84 ~-------~~~v~~~~~~-~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~----~~~~i~~~~-------------  136 (253)
                      .       ......+.++ ++++++.+..  ++.|.+.|+.+.+....+.....    ..+.-..+.             
T Consensus       168 ~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          168 PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC
Confidence            1       1234578999 9998888764  57899999998875443322100    000000122             


Q ss_pred             ------------------------eeCCCCCEEEEEEeCCCeEEEEECCCCCCCe-eeec----------ccccceeEEE
Q 035558          137 ------------------------WNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQ----------RHQASVNAIA  181 (253)
Q Consensus       137 ------------------------~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~----------~~~~~i~~~~  181 (253)
                                              +.+ ++..++.....+. +.+.|+......+ ..+.          ........++
T Consensus       248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va  325 (426)
T 3c75_H          248 DGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGK-IFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA  325 (426)
T ss_dssp             TTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSE-EEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred             CCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCc-EEEEeccCCceEEeeeeeeccccccccccccCCceeeE
Confidence                                    233 3333333344443 6666664322100 0000          0011222378


Q ss_pred             EecCCCCeEEEec----------CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC-ceEEEE-cCCcEE
Q 035558          182 WAPHSSCHICTAG----------DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP-DWVAIA-FSTKLQ  249 (253)
Q Consensus       182 ~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~i~  249 (253)
                      ++|++. .+++..          .++.|.++|+.+.+...        ...-......++|+|+++ .+++.. .++.|.
T Consensus       326 ~s~dg~-rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~--------~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          326 YHRQSD-RIYLLVDQRDEWKHKAASRFVVVLNAETGERIN--------KIELGHEIDSINVSQDAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             EEGGGT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--------EEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             EcCCCC-EEEEEecccccccccCCCCEEEEEECCCCeEEE--------EEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence            999985 444432          13579999999987433        122233688999999998 777777 589999


Q ss_pred             EEEC
Q 035558          250 ILRV  253 (253)
Q Consensus       250 vw~l  253 (253)
                      |+|+
T Consensus       397 VID~  400 (426)
T 3c75_H          397 IYDA  400 (426)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9885

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.35  E-value=2e-09  Score=83.21  Aligned_cols=194  Identities=7%  Similarity=-0.077  Sum_probs=124.2

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY  123 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  123 (253)
                      ..+..|+|..+.++++...++.|..||.++++.. .+. ....+.++++. +++++++. .+ .|.+||..+++... +.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~-~~  125 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL-HA  125 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE-EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE-Ee
Confidence            4578899445667777778899999999877643 233 34678999999 87776654 44 49999998776322 22


Q ss_pred             ccC--CCCCCeeEEEeeCCCCCEEEEEEeC------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558          124 ESS--EPDTPLVRLGWNKQDPRYMATIIMD------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       124 ~~~--~~~~~i~~~~~~~~~~~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      ...  .....+..++++| +++++++...+      +. |..++  +.+  ...+..+....+.++|+|++..++++.+.
T Consensus       126 ~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~-l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGS-IYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEE-EEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             eCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceE-EEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence            211  1123688999999 78766654432      23 66666  322  33333334457889999999433455567


Q ss_pred             CCcEEEEecc--CC-CCCCCCCCCCe-eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          196 DSQALIWDLS--SM-GQPVEGGLDPI-LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       196 dg~i~iwd~~--~~-~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++.|.+|++.  ++ ....   .... ........+..+++.+++..+++...++.|.+|+
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~---~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGK---AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSC---CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             CCEEEEEEcccccCCcccC---ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence            8899999986  33 2110   0001 1112345678899999998666666667788775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=4.7e-10  Score=95.40  Aligned_cols=222  Identities=13%  Similarity=0.076  Sum_probs=131.8

Q ss_pred             CCCceEE-----eecC--cEEEEEccCCccccceeee-ecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---------
Q 035558            3 QKPDLLA-----TSSD--FLRVWRISDEDRRVELKSL-LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT---------   65 (253)
Q Consensus         3 ~~~~~l~-----~~~~--~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------   65 (253)
                      +++++||     .|++  .|++||+.++    +.+.. +..       .....++|+  +++.|+.++.+.         
T Consensus       138 pDg~~lAy~~~~~G~~~~~i~v~dl~tg----~~~~~~~~~-------~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          138 RDGRILAYSLSLAGSDWREIHLMDVESK----QPLETPLKD-------VKFSGISWL--GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TTSSEEEEEEECSSCCEEEEEEEETTTC----SEEEEEEEE-------EESCCCEEE--TTTEEEEEESSCCC-------
T ss_pred             CCCCEEEEEEecCCCceEEEEEEECCCC----CCCccccCC-------ceeccEEEe--CCCEEEEEEecCccccccccc
Confidence            3566666     3444  8999999986    33221 111       113467898  677777777663         


Q ss_pred             ----eEEEEeccCce----eeeeeec-ccccEEEEEec-CCCeEEEEeC----CCcEEEEEcCCCC-CeeeeeccCCCCC
Q 035558           66 ----TCTIWDIEREA----VDTQLIA-HDKEVYDIAWG-GVGVFASVSA----DGSVRVFDLRDKE-HSTIIYESSEPDT  130 (253)
Q Consensus        66 ----~i~vwd~~~~~----~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~  130 (253)
                          .|++|++.+..    .+..... |......+.|+ ++++|+....    ...|+++|+.++. ....+...   ..
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~---~~  281 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD---LD  281 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS---SS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC---CC
Confidence                49999987654    2322233 44457889999 8887755432    3589999998764 22333222   22


Q ss_pred             CeeEEEeeCCCCCEEEEEE-eCC--CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEec-CCC--cEEEEe
Q 035558          131 PLVRLGWNKQDPRYMATII-MDS--AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAG-DDS--QALIWD  203 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~-~~~--~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg--~i~iwd  203 (253)
                      ..... +++ ++..|+..+ .++  ..|..+|+.+... ....+..|...+.  .|++++. .|+... .++  .|++|+
T Consensus       282 ~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~-~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          282 ADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG-YLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             SCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT-EEEEEEEETTEEEEEEEC
T ss_pred             ceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC-EEEEEEEECCeeEEEEEE
Confidence            33333 556 444444444 332  3499999987542 1345555665554  8899985 555444 454  688888


Q ss_pred             ccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC----CcEEEEE
Q 035558          204 LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS----TKLQILR  252 (253)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~vw~  252 (253)
                      +......       .........+..+.++++++.++....+    +.+..|+
T Consensus       357 ~~g~~~~-------~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          357 YEGKRVR-------EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             TTSCEEE-------EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             CCCCeeE-------EeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            8743211       1222345567788888888766644433    5566554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=2.4e-09  Score=83.77  Aligned_cols=221  Identities=12%  Similarity=0.055  Sum_probs=137.4

Q ss_pred             cEEEEEccCCccccceeeeecCCC--CccccCCeeEEEecCCCCCEEEEEeC--CCeEEEEeccCceeeeeeecccccEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNK--NSEYCGPLTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVDTQLIAHDKEVY   89 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~   89 (253)
                      .|.+||..+.    +....+....  ..........+.|+ +++++++.+..  ++.|.++|+.+++.+.++.... .  
T Consensus       110 ~VsviD~~t~----~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~--  181 (386)
T 3sjl_D          110 YVEVFDPVTL----LPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C--  181 (386)
T ss_dssp             EEEEECTTTC----CEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E--
T ss_pred             EEEEEECCCC----eEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c--
Confidence            8999999986    6666553211  00000235578999 89998888764  6899999999999888875321 1  


Q ss_pred             EEEec-CCCeEEEEeCCCcEEEEEcCC-CCCeeeeeccC-CCCCCe-eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558           90 DIAWG-GVGVFASVSADGSVRVFDLRD-KEHSTIIYESS-EPDTPL-VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus        90 ~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~-~~~~~i-~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                      ...+. ..+.+++.+.||.+.+.++.. ++......... ....++ ....|.+.+++++. .+.++. |++.|+.....
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~  259 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDA  259 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSC
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcc
Confidence            23344 666777888999999999986 44311111110 011122 22466543665544 455666 99999976431


Q ss_pred             -Ceeeec----------ccccceeEEEEecCCCCeEEEecC----------CCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          166 -PVVELQ----------RHQASVNAIAWAPHSSCHICTAGD----------DSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       166 -~~~~~~----------~~~~~i~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                       ....+.          ........++++|++. .++....          .+.|.++|+.+.+...        ...-.
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--------~i~vg  330 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--------KFEMG  330 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--------EEEEE
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCC-eEEEEeccccccccCCCCCEEEEEECCCCeEEE--------EEECC
Confidence             111111          0123344578899985 5555431          2579999999977432        22223


Q ss_pred             CceeEEEEcCCCC-ceEEE-EcCCcEEEEEC
Q 035558          225 AEIEQLQWSSSQP-DWVAI-AFSTKLQILRV  253 (253)
Q Consensus       225 ~~v~~~~~~~~~~-~~~~~-~~~~~i~vw~l  253 (253)
                      .++.+|+++++++ .|+++ ..++.|.+++.
T Consensus       331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            4788999999996 56654 45888998874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.25  E-value=9.2e-10  Score=84.23  Aligned_cols=193  Identities=9%  Similarity=0.014  Sum_probs=122.4

Q ss_pred             CCeeEEEecCCCCC-EEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           43 GPLTSFDWNEAEPR-RIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        43 ~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      .......|+ ++++ ++++...++.|..|+.. ++ ...+..+...+..+++. +++++++...++.|..|+.. ++. .
T Consensus        45 ~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~  119 (305)
T 3dr2_A           45 TWSEGPAWW-EAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-H  119 (305)
T ss_dssp             SSEEEEEEE-GGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred             cCccCCeEe-CCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-E
Confidence            356688999 6776 67788888999999984 44 34455566778999999 88877666666889999986 432 2


Q ss_pred             eeecc-C-CCCCCeeEEEeeCCCCCEEEE----EEe-------------CCCeEEEEECCCCCCCeeeecccccceeEEE
Q 035558          121 IIYES-S-EPDTPLVRLGWNKQDPRYMAT----IIM-------------DSAKVVVLDIRFPTLPVVELQRHQASVNAIA  181 (253)
Q Consensus       121 ~~~~~-~-~~~~~i~~~~~~~~~~~~l~~----~~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~  181 (253)
                      .+... . .....+..++++| +++++++    +..             .+. |..+|..+++.  ..+. .....+.++
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~-v~~~d~~~g~~--~~~~-~~~~p~gl~  194 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHS-VYRLPPDGSPL--QRMA-DLDHPNGLA  194 (305)
T ss_dssp             EEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEE-EEEECSSSCCC--EEEE-EESSEEEEE
T ss_pred             EEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCe-EEEEcCCCCcE--EEEe-cCCCCcceE
Confidence            22211 1 1112567899999 8887775    221             133 88888765442  2222 345678899


Q ss_pred             EecCCCCeEEEecCC------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          182 WAPHSSCHICTAGDD------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       182 ~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |+|++ +.|+.+...      +.|.+|++.... ..   ............+..+++.++|..++ ++ .+.|.+|+
T Consensus       195 ~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~---~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~~gv~~~~  264 (305)
T 3dr2_A          195 FSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LH---DRRHFASVPDGLPDGFCVDRGGWLWS-SS-GTGVCVFD  264 (305)
T ss_dssp             ECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EE---EEEEEECCSSSCCCSEEECTTSCEEE-CC-SSEEEEEC
T ss_pred             EcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-cc---CCeEEEECCCCCCCeEEECCCCCEEE-ec-CCcEEEEC
Confidence            99999 566666554      789999987543 10   00001111234456788999987443 33 34577664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.23  E-value=2.4e-09  Score=83.28  Aligned_cols=205  Identities=10%  Similarity=0.049  Sum_probs=123.2

Q ss_pred             CeeEEEecCCCCCEEEEEe--CCCeEEEEeccCceeeeee-------ecccccEEEEEec-CCCeEEEEeC-----CCcE
Q 035558           44 PLTSFDWNEAEPRRIGTSS--IDTTCTIWDIEREAVDTQL-------IAHDKEVYDIAWG-GVGVFASVSA-----DGSV  108 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i  108 (253)
                      .+..++++ ++++++++..  .++.++||.+.+++.. .+       ..+-..+..+++. +++++++-..     ++.|
T Consensus        18 ~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            57899999 7888888864  2343555555455432 22       1344678999999 7776665443     5789


Q ss_pred             EEEEcCCCCCeeeeecc---CCCCCCeeEEEeeCCCCCEEEEEE---eCCCeEEEEECCCCCCCeeeeccc---------
Q 035558          109 RVFDLRDKEHSTIIYES---SEPDTPLVRLGWNKQDPRYMATII---MDSAKVVVLDIRFPTLPVVELQRH---------  173 (253)
Q Consensus       109 ~i~d~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~---~~~~~i~~~d~~~~~~~~~~~~~~---------  173 (253)
                      .+||+.+++....+...   ..+...+..++++|.++..+++-.   .++. |.+||+.+.+. ...+..|         
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~g~~-~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQTGLA-ARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTTCCE-EEECTTCTTTSCCSCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECCCCCE-EEEecCCCcccccccc
Confidence            99999987644333221   122235689999983344444433   3555 99999876442 2222111         


Q ss_pred             --------------------ccceeEEEEecCCCCeEEEecCCC-cEEEEeccCCCCCCCCC---CCCeeeccCCCceeE
Q 035558          174 --------------------QASVNAIAWAPHSSCHICTAGDDS-QALIWDLSSMGQPVEGG---LDPILAYTAGAEIEQ  229 (253)
Q Consensus       174 --------------------~~~i~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~v~~  229 (253)
                                          ...++.++|+|++ +.|+.+..++ .+..++...........   .......++......
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence                                1236889999999 5777776555 55444432111000000   000112233446678


Q ss_pred             EEEcCCCCceEEEEcCCcEEEEEC
Q 035558          230 LQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++++++|..+++...++.|.+|+.
T Consensus       253 ia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          253 ISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEEET
T ss_pred             EEECCCCCEEEEccCCCeEEEEEC
Confidence            999999987778778888999873

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=5.7e-12  Score=99.12  Aligned_cols=181  Identities=14%  Similarity=0.010  Sum_probs=96.1

Q ss_pred             CceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +.++++++ + .|+.||..++    +.+..++. .      .+.+..+. .++..+++++.||.|+.||.++++.+..+.
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG----~~~W~~~~-~------~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~   76 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTG----SIKWTLKE-D------PVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLP   76 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTC----CEEEEEEC-C------CSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred             CCEEEEEcCCCEEEEEECCCC----CEEEEecC-C------CceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence            34444544 5 9999999988    66666554 2      23333333 456678888899999999999888766554


Q ss_pred             cccc-cEE-EEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEEC
Q 035558           83 AHDK-EVY-DIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI  160 (253)
Q Consensus        83 ~~~~-~v~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~  160 (253)
                      .+.. .+. ...+..+..+++++.|+.++.||.++++.....   ..+.    ...++| ++..+++++.++. |+.||.
T Consensus        77 ~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~---~~~~----~~~~~p-~~~~v~~~~~dg~-v~a~d~  147 (369)
T 2hz6_A           77 FTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTL---SSAF----ADSLSP-STSLLYLGRTEYT-ITMYDT  147 (369)
T ss_dssp             CCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------------EEEEEEEEE-EECCCS
T ss_pred             ccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEe---cCCC----cccccc-cCCEEEEEecCCE-EEEEEC
Confidence            3321 111 111113456778888999999999988743222   1111    234567 7788888888888 999999


Q ss_pred             CCCCCCeeeecccccceeEEEEecCC--CCeEEEecCCCcEEEEeccCCCC
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHS--SCHICTAGDDSQALIWDLSSMGQ  209 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~  209 (253)
                      ++++. +..+..+.  .....+.++.  ...+++++.||.|+.||.++++.
T Consensus       148 ~tG~~-~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          148 KTREL-RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             SSSSC-CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             CCCCE-EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            98764 44433211  2223344421  02577788899999999998763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=5.4e-12  Score=99.25  Aligned_cols=177  Identities=10%  Similarity=-0.026  Sum_probs=94.4

Q ss_pred             CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558           54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL  132 (253)
Q Consensus        54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i  132 (253)
                      .+..+++++.||.|+.||.++++.+..+..  +.+.+..+. ++..+++++.||.|+.||.++++....... .. ...+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~-~~-~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF-TI-PELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC-CH-HHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec-cC-cccc
Confidence            467899999999999999999998887775  455554455 677888888999999999988764322111 00 0001


Q ss_pred             e-EEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC
Q 035558          133 V-RLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV  211 (253)
Q Consensus       133 ~-~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  211 (253)
                      . +..+.  .+..+++++.++. ++.||.++++. +..+..+.    ...++|++ ..+++++.|+.|+.||.++++..-
T Consensus        84 ~~sp~~~--~~~~v~~g~~dg~-v~a~D~~tG~~-~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           84 QASPCRS--SDGILYMGKKQDI-WYVIDLLTGEK-QQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             TTCSCC-------CCCCEEEEE-EEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             ccCceEe--cCCEEEEEeCCCE-EEEEECCCCcE-EEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCCEEE
Confidence            0 00111  3446677777887 99999998764 45554432    23456776 588899999999999999877432


Q ss_pred             CCCCCCeeeccCCCceeEEEEcCCC---CceEEEEcCCcEEEEE
Q 035558          212 EGGLDPILAYTAGAEIEQLQWSSSQ---PDWVAIAFSTKLQILR  252 (253)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~i~vw~  252 (253)
                             ....+  .....++.++.   ..+++++.++.+..|+
T Consensus       155 -------~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d  189 (369)
T 2hz6_A          155 -------NATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVD  189 (369)
T ss_dssp             -------EEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEEC
T ss_pred             -------eEecc--cccCccccCCccccceEEEECCCCEEEEEE
Confidence                   11100  11222333321   3467777788887776

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=1.4e-07  Score=70.65  Aligned_cols=225  Identities=8%  Similarity=-0.024  Sum_probs=129.8

Q ss_pred             eEEeecC-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecc
Q 035558            7 LLATSSD-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAH   84 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~   84 (253)
                      +|..+.. .|+.++++..... ......+....     ..+..++|+|.++.++++-..++.|..+++........+...
T Consensus         3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~   77 (267)
T 1npe_A            3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD   77 (267)
T ss_dssp             EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT
T ss_pred             EEEEEcCCeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC
Confidence            4444444 8888998764110 00011121111     346789999434555556566789999999765433333222


Q ss_pred             cccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC--CCeEEEEEC
Q 035558           85 DKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD--SAKVVVLDI  160 (253)
Q Consensus        85 ~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~~i~~~d~  160 (253)
                      ......+++. ++. ++++-...+.|.++++...... .+...  .......++++| ++..|..+...  ...|..+++
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~--~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~  153 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDT--GLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHM  153 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS--SCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEET
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEEC--CCCCccEEEEee-CCCEEEEEECCCCCcEEEEEec
Confidence            2467889998 544 5555556789999998765422 22211  113678999999 55555555443  234888887


Q ss_pred             CCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          161 RFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       161 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ....  ...+ .........++++|++.+++++-...+.|.++|+......        ...........++.. .+ .+
T Consensus       154 dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--------~~~~~~~~P~gi~~d-~~-~l  221 (267)
T 1npe_A          154 DGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--------KVLEGLQYPFAVTSY-GK-NL  221 (267)
T ss_dssp             TSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE--------EEEECCCSEEEEEEE-TT-EE
T ss_pred             CCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE--------EEecCCCCceEEEEe-CC-EE
Confidence            6432  2222 1223457899999987545566667789999998753311        111122334566654 33 44


Q ss_pred             E-EEEcCCcEEEEE
Q 035558          240 V-AIAFSTKLQILR  252 (253)
Q Consensus       240 ~-~~~~~~~i~vw~  252 (253)
                      + +...++.|.+++
T Consensus       222 yva~~~~~~v~~~d  235 (267)
T 1npe_A          222 YYTDWKTNSVIAMD  235 (267)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEe
Confidence            4 444456776665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.17  E-value=1.7e-09  Score=84.47  Aligned_cols=213  Identities=10%  Similarity=-0.064  Sum_probs=130.6

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .|.+.|..+.    +.+.++....     .+  .+.++ +++++++.+.          .++.|.+||..+++.+..+..
T Consensus        47 ~vsvID~~t~----~v~~~i~vG~-----~P--~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v  114 (368)
T 1mda_H           47 ENWVSCAGCG----VTLGHSLGAF-----LS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             EEEEEETTTT----EEEEEEEECT-----TC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred             eEEEEECCCC----eEEEEEeCCC-----CC--ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            5778999887    7777777655     55  79999 8888888775          368999999999999888864


Q ss_pred             c-------cccEEEEEec-CCCeEEEEeC--CCcEEE--EEcCCCCCeeeeeccC---------------CCCCCeeEEE
Q 035558           84 H-------DKEVYDIAWG-GVGVFASVSA--DGSVRV--FDLRDKEHSTIIYESS---------------EPDTPLVRLG  136 (253)
Q Consensus        84 ~-------~~~v~~~~~~-~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~---------------~~~~~i~~~~  136 (253)
                      .       ......++++ ++++++++..  +..+.+  +|..+   ...+....               ...+.+..+.
T Consensus       115 ~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred             CCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEE
Confidence            3       1235678999 9999888864  467888  88866   11111000               0000111111


Q ss_pred             e--------------------------eCCCCCEEEEEEeCCCeEEEEECCCCCCC-eeeec-------cc---ccceeE
Q 035558          137 W--------------------------NKQDPRYMATIIMDSAKVVVLDIRFPTLP-VVELQ-------RH---QASVNA  179 (253)
Q Consensus       137 ~--------------------------~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~-------~~---~~~i~~  179 (253)
                      .                          .+ ++..++..+. +. +.+.|+...... +..+.       .+   ......
T Consensus       192 ~~~~~~~~~~v~~~~t~~i~vg~~P~~~~-~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  268 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCTGAQNCSSQAAQAN-YPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM  268 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCEEET-TTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred             CccccccCCeEEEEeeeeeeCCCCccccc-cCCEEEEEcC-CE-EEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence            0                          22 2233333333 55 777777543211 11111       00   111222


Q ss_pred             EEEecCCCCeEEEe-c---C-----CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce-EEEE-cCCcE
Q 035558          180 IAWAPHSSCHICTA-G---D-----DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW-VAIA-FSTKL  248 (253)
Q Consensus       180 ~~~~~~~~~~l~~~-~---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-~~~~i  248 (253)
                      ++++|++. .++.+ .   .     ++.+.++|+.+.+...        ...-......++|+|+++.+ ++.. .++.|
T Consensus       269 v~~s~dg~-~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~--------~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          269 VAKLKNTD-GIMILTVEHSRSCLAAAENTSSVTASVGQTSG--------PISNGHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EEEETTTT-EEEEEEEECSSCTTSCEEEEEEEESSSCCEEE--------CCEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             eEEcCCCC-EEEEEeccccCcccccCCCEEEEECCCCeEEE--------EEECCCCcceEEECCCCCEEEEEccCCCCeE
Confidence            78999985 55543 3   2     2356699999976432        11122368899999999854 4666 58999


Q ss_pred             EEEEC
Q 035558          249 QILRV  253 (253)
Q Consensus       249 ~vw~l  253 (253)
                      .++|+
T Consensus       340 sVID~  344 (368)
T 1mda_H          340 DIYDA  344 (368)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99985

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.15  E-value=1.6e-08  Score=79.10  Aligned_cols=190  Identities=14%  Similarity=0.038  Sum_probs=121.9

Q ss_pred             CCCCEEEEEeC-----CCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe----------CCCcEEEEEcCCC
Q 035558           53 AEPRRIGTSSI-----DTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS----------ADGSVRVFDLRDK  116 (253)
Q Consensus        53 ~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~dg~i~i~d~~~~  116 (253)
                      |+++.++....     ++.|.+.|..+++.+..+..-..+ . ++++ ++++++++.          .++.|.+||..+.
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            78888887765     679999999999999888755555 4 9999 999887765          3678999999998


Q ss_pred             CCeeeeeccCCC----CCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEE
Q 035558          117 EHSTIIYESSEP----DTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       117 ~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  191 (253)
                      +....+....+.    ......++|+| ++++++++... ...|.++|+.+.+. +.++....  .  ....|.+.+.++
T Consensus       120 ~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g--~--~~~~P~g~~~~~  193 (386)
T 3sjl_D          120 LPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD--C--YHIFPTAPDTFF  193 (386)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E--EEEEEEETTEEE
T ss_pred             eEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECCC--c--ceeecCCCceeE
Confidence            866555432211    12466799999 89988888753 33499999998663 55553211  1  222355545677


Q ss_pred             EecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce-eEEEEc-CCCCceEEEEcCCcEEEEEC
Q 035558          192 TAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI-EQLQWS-SSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       192 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +.+.||++.+.++...........  ..+.....++ ...+|. ++|+ ++-.+.++.+.+.++
T Consensus       194 ~~~~DG~~~~v~~~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~  254 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTEGTPEITHT--EVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDL  254 (386)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEEC--CCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEEC
T ss_pred             EECCCCCEEEEECCCCCeEEEeec--ceeccccccccccceeEcCCCc-EEEEeCCCEEEEEEC
Confidence            778888888888876322210000  0000111222 123554 5664 444666777777653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.15  E-value=3.4e-08  Score=77.65  Aligned_cols=146  Identities=12%  Similarity=-0.062  Sum_probs=102.6

Q ss_pred             CCCCEEEEEeC--CC---eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe----------CCCcEEEEEcCCC
Q 035558           53 AEPRRIGTSSI--DT---TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS----------ADGSVRVFDLRDK  116 (253)
Q Consensus        53 ~~~~~l~~~~~--dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~dg~i~i~d~~~~  116 (253)
                      ++++++++...  ..   .|.++|..+++.+..+.....+  .++++ +++.++.+.          .++.|.+||..+.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            67777776653  22   8899999999988777644444  89999 999888875          3678999999887


Q ss_pred             CCeeeeecc-CCC---CCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCCeee-ecccccceeEEEEecCCCCeE
Q 035558          117 EHSTIIYES-SEP---DTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLPVVE-LQRHQASVNAIAWAPHSSCHI  190 (253)
Q Consensus       117 ~~~~~~~~~-~~~---~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l  190 (253)
                      +....+... ...   ......++|+| ++++++++... ...|.++| .+.+. +.. +.. ..   ++.+.|++++.+
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~~---~~~~~~~~~~~~  180 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-PT---CYHIHPGAPSTF  180 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-Cc---eEEEEeCCCceE
Confidence            754444322 000   12345799999 99999988753 33499999 77553 444 432 11   255667776677


Q ss_pred             EEecCCCcEEEEeccCCC
Q 035558          191 CTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       191 ~~~~~dg~i~iwd~~~~~  208 (253)
                      ++.+.||.+.++|. +++
T Consensus       181 ~~~~~dg~~~~vd~-~g~  197 (373)
T 2mad_H          181 YLLCAQGGLAKTDH-AGG  197 (373)
T ss_pred             EEEcCCCCEEEEEC-CCc
Confidence            78889999999999 654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.14  E-value=7.5e-08  Score=71.50  Aligned_cols=192  Identities=9%  Similarity=0.001  Sum_probs=123.7

Q ss_pred             eeEEEecCCCCCEEEEEeC--CCeEEEEeccCceeeeeeeccc-ccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           45 LTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVDTQLIAHD-KEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      ...+.|+ +++.++++.+.  ++.|+++|+.+++.+..+.-.. .....+++..+.+.++.-.++.+.++|..+.+....
T Consensus        23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            5789999 66655555443  5799999999999888765211 122345554445556666789999999998875555


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccc--c---cceeEEEEecCCCCeEEEecCC
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRH--Q---ASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      +... ...  -  ..+++ ++..++++..++. |.++|..+.+. +..+.-.  .   ..++.+.|. ++ .+.+....+
T Consensus       102 i~~g-~~~--g--~glt~-Dg~~l~vs~gs~~-l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~  171 (266)
T 2iwa_A          102 FTHQ-MKD--G--WGLAT-DGKILYGSDGTSI-LYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQT  171 (266)
T ss_dssp             EECC-SSS--C--CEEEE-CSSSEEEECSSSE-EEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTS
T ss_pred             EECC-CCC--e--EEEEE-CCCEEEEECCCCe-EEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CC-EEEEecCCC
Confidence            4322 122  1  23455 5666666665555 99999988663 4444321  1   136788888 66 466666678


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeecc-----------CCCceeEEEEcCCCCceE-EEEcCCcEEEEE
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAYT-----------AGAEIEQLQWSSSQPDWV-AIAFSTKLQILR  252 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~-~~~~~~~i~vw~  252 (253)
                      +.|.+.|..+++...     .....+           .....+.|+|+|+++.++ ++...+.+.+.+
T Consensus       172 ~~V~vID~~tg~V~~-----~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          172 DCIARISAKDGTLLG-----WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             SEEEEEETTTCCEEE-----EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             CeEEEEECCCCcEEE-----EEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            999999999987433     011111           124568999999987666 555667776655

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=2.5e-07  Score=69.20  Aligned_cols=212  Identities=9%  Similarity=-0.017  Sum_probs=124.0

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |.++.++++...  .|..++++..    .....+....     .....++++|..+.++++-...+.|.++++.......
T Consensus        45 ~~~~~ly~~d~~~~~I~~~~~~g~----~~~~~~~~~~-----~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           45 CVDKVVYWTDISEPSIGRASLHGG----EPTTIIRQDL-----GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEESSSC----CCEEEECTTC-----CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cCCCEEEEEECCCCEEEEEecCCC----CcEEEEECCC-----CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            445556666543  8888888764    2222222221     3567899983345555555667899999987433222


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeC---CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      ...........++++ ++..|..+..   .+.|..+++..... ..+..  ........++++| ++..|+.+......|
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~--~~~~~P~gia~d~-~~~~lyv~d~~~~~I  191 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQ--DNLGLPNGLTFDA-FSSQLCWVDAGTHRA  191 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEEC--TTCSCEEEEEEET-TTTEEEEEETTTTEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEE--CCCCCCcEEEEcC-CCCEEEEEECCCCEE
Confidence            222222456889998 5565555443   36888888875432 22221  1123678899999 666676666655559


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      .++|...... ...+. .......++..  +..++++....+.|..+|..+++...      ....+.......+++.|+
T Consensus       192 ~~~~~~g~~~-~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~------~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          192 ECLNPAQPGR-RKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD------TFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             EEEETTEEEE-EEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEE------EECCSSCCCCCCEEEECS
T ss_pred             EEEecCCCce-EEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceE------EEccccccccceeeecCc
Confidence            9999875321 22222 22334566654  33455666677899999998765332      111122224677788777


Q ss_pred             C
Q 035558          236 Q  236 (253)
Q Consensus       236 ~  236 (253)
                      +
T Consensus       262 ~  262 (267)
T 1npe_A          262 Q  262 (267)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.12  E-value=1.4e-08  Score=78.15  Aligned_cols=212  Identities=12%  Similarity=-0.033  Sum_probs=131.1

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      +.+.+.+.+ .|..+|.. +    +.......+.     ..+.++... +++. +..++.++.|..+|.+ ++....+..
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g----~~~~~~~~~~-----~~~~~~~~~-~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-G----TEKWRFKTKK-----AIYATPIVS-EDGT-IYVGSNDNYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-S----CEEEEEECSS-----CCCSCCEEC-TTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred             CEEEEEecCCEEEEEcCC-C----CEEEEEcCCC-----ceeeeeEEc-CCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence            444444445 88888887 4    4444444333     345555555 4555 6667888999999998 776666655


Q ss_pred             ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558           84 HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus        84 ~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      ....+.++... ++.+ ..++  +.|..+| .+++..   .........+.++...+ ++ .+.+++.+++ +..+|.. 
T Consensus       175 ~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~---~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~g-l~~~~~~-  243 (330)
T 3hxj_A          175 NDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEK---WNFYAGYWTVTRPAISE-DG-TIYVTSLDGH-LYAINPD-  243 (330)
T ss_dssp             SSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCEE---EEECCSSCCCSCCEECT-TS-CEEEEETTTE-EEEECTT-
T ss_pred             CCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEE---EEEccCCcceeceEECC-CC-eEEEEcCCCe-EEEECCC-
Confidence            55566667776 5554 4444  7799999 555422   22222223577777776 55 4555666677 8888743 


Q ss_pred             CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      .. .+..+......+..+.+.+++  .|..++.+|.|..+|. +++...       ........+.++...+++. +..+
T Consensus       244 g~-~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~~~~-------~~~~~~~~~~~~~~d~~g~-l~~g  311 (330)
T 3hxj_A          244 GT-EKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGTEKW-------NFETGSWIIATPVIDENGT-IYFG  311 (330)
T ss_dssp             SC-EEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSCEEE-------EEECSSCCCSCCEECTTCC-EEEE
T ss_pred             CC-EeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCcEEE-------EEEcCCccccceEEcCCCE-EEEE
Confidence            23 244444434444556666665  6778888989999985 433221       2222345567777778875 7778


Q ss_pred             EcCCcEEEEE
Q 035558          243 AFSTKLQILR  252 (253)
Q Consensus       243 ~~~~~i~vw~  252 (253)
                      +.+|.+++..
T Consensus       312 t~~G~~~~~~  321 (330)
T 3hxj_A          312 TRNGKFYALF  321 (330)
T ss_dssp             CTTSCEEEEE
T ss_pred             cCCCeEEEEe
Confidence            8888888764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=2.9e-08  Score=84.09  Aligned_cols=184  Identities=9%  Similarity=0.055  Sum_probs=117.9

Q ss_pred             EEEecCCCCCEEEEEeCCC-------------------eEEEEeccCceeeeeeec--cc-------ccEEEEEec-CC-
Q 035558           47 SFDWNEAEPRRIGTSSIDT-------------------TCTIWDIEREAVDTQLIA--HD-------KEVYDIAWG-GV-   96 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~-~~-   96 (253)
                      .++++ ++...++.++.++                   .|..+|.++++.+..++.  |.       ....-+... ++ 
T Consensus       247 ~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            56777 6677888777664                   599999999998877663  21       112222333 55 


Q ss_pred             --CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC-------CC-C------------------------eeEEEeeCCCC
Q 035558           97 --GVFASVSADGSVRVFDLRDKEHSTIIYESSEP-------DT-P------------------------LVRLGWNKQDP  142 (253)
Q Consensus        97 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~-~------------------------i~~~~~~~~~~  142 (253)
                        ..++.++.+|.++++|.++++...........       .+ +                        -..++++| +.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~  404 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QT  404 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CC
Confidence              68899999999999999998854332211000       00 0                        12578888 66


Q ss_pred             CEEEEEEeC-------------------------------------------CCeEEEEECCCCCCCeeeecccccceeE
Q 035558          143 RYMATIIMD-------------------------------------------SAKVVVLDIRFPTLPVVELQRHQASVNA  179 (253)
Q Consensus       143 ~~l~~~~~~-------------------------------------------~~~i~~~d~~~~~~~~~~~~~~~~~i~~  179 (253)
                      .++++...+                                           +. |..||+.+++. +.++. +..++.+
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-l~A~D~~tG~~-~W~~~-~~~~~~~  481 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR-LLAWDPVAQKA-AWSVE-HVSPWNG  481 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE-EEEEETTTTEE-EEEEE-ESSSCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE-EEEEeCCCCcE-EeecC-CCCCCcC
Confidence            666665432                                           34 99999988663 44443 3344555


Q ss_pred             EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      ..+...+ .+++.++.||.+++||.++++...      ....++.....-+.|..+|+.+++.
T Consensus       482 g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw------~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          482 GTLTTAG-NVVFQGTADGRLVAYHAATGEKLW------EAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             CEEEETT-TEEEEECTTSEEEEEETTTCCEEE------EEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cceEeCC-CEEEEECCCCcEEEEECCCCceee------eeeCCCCcccCCEEEEeCCEEEEEE
Confidence            5667777 488889999999999999988543      1222333333445667788766654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.10  E-value=5.4e-07  Score=71.20  Aligned_cols=222  Identities=7%  Similarity=-0.059  Sum_probs=130.4

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD   85 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~   85 (253)
                      +|..+.. .|+..++...    .....+...      ..+..++|++.++.++++-...+.|+.+++........+....
T Consensus        89 ~l~~~~~~~I~~i~~~~~----~~~~~~~~~------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~  158 (386)
T 3v65_B           89 VLLFANRIDIRQVLPHRS----EYTLLLNNL------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL  158 (386)
T ss_dssp             EEEEECBSCEEEECTTSC----CCEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred             eeEeecCccceeeccCCC----cEEEEecCC------CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence            3334444 8888888764    333333333      3577999995556666666677899999988665333333222


Q ss_pred             ccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-CeEEEEECCC
Q 035558           86 KEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-AKVVVLDIRF  162 (253)
Q Consensus        86 ~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~  162 (253)
                      .....+++.  .+.++++-...+.|.+.++........+ .  ........++++| .+..|+.+.... ..|..+++..
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-~--~~l~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-W--QSLEKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-C--SSCSCEEEEEEET-TTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-c--CCCCCCcEEEEEc-CCCeEEEeccCCCCEEEEEeCCC
Confidence            344567777  4555666666788999888765432222 1  1223678899999 455555544433 4488888865


Q ss_pred             CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      ... .......-...+.|+++|++.++.++-+..+.|..+|+.......       ..........++++. .+..+++-
T Consensus       235 ~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~-------~~~~~~~~P~giav~-~~~ly~td  305 (386)
T 3v65_B          235 SGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA-------VISQGLPHPFAITVF-EDSLYWTD  305 (386)
T ss_dssp             CSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEE-------EECSSCSSEEEEEEE-TTEEEEEE
T ss_pred             CCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEE-------EEECCCCCceEEEEE-CCEEEEee
Confidence            332 222222334578999998775555666677889999986533211       222233456677773 33333344


Q ss_pred             EcCCcEEEE
Q 035558          243 AFSTKLQIL  251 (253)
Q Consensus       243 ~~~~~i~vw  251 (253)
                      ...+.|..+
T Consensus       306 ~~~~~V~~~  314 (386)
T 3v65_B          306 WHTKSINSA  314 (386)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCeEEEE
Confidence            445555544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.10  E-value=1.2e-06  Score=68.21  Aligned_cols=222  Identities=7%  Similarity=-0.060  Sum_probs=129.1

Q ss_pred             eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccc
Q 035558            7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDK   86 (253)
Q Consensus         7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~   86 (253)
                      ++++....|+..+++..    .....+...      ..+..++|++.++.++++-...+.|+.+++........+.....
T Consensus        47 ll~~~~~~I~~i~~~g~----~~~~~~~~~------~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~  116 (349)
T 3v64_C           47 LLFANRIDIRQVLPHRS----EYTLLLNNL------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE  116 (349)
T ss_dssp             EEEECBSCEEEECTTSC----CEEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             eEeecccceEEEeCCCC----eeEEeecCC------CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC
Confidence            33333337777777663    333333333      35779999955555666666778999999886553333332223


Q ss_pred             cEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-CeEEEEECCCC
Q 035558           87 EVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-AKVVVLDIRFP  163 (253)
Q Consensus        87 ~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~~  163 (253)
                      ....+++.  .+.++.+-...+.|.+.++........+ .  ........++++| .+..|+.+.... ..|..+++...
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~--~~l~~P~~iavdp-~~g~ly~td~~~~~~I~r~~~dG~  192 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-W--QSLEKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDGS  192 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C--TTCSCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-e--CCCCCcceEEEec-CcCeEEEeccCCCCEEEEEeCCCC
Confidence            45677777  4556666667789999998865432222 1  1223578899999 444554444433 34888888753


Q ss_pred             CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      .. .......-...+.++++|++.++.++-...+.|..+|+.......       ..........++++. .+..+++-.
T Consensus       193 ~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~-------~~~~~~~~P~giav~-~~~ly~td~  263 (349)
T 3v64_C          193 GR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA-------VISQGLPHPFAITVF-EDSLYWTDW  263 (349)
T ss_dssp             SC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------EECSSCSSEEEEEEE-TTEEEEEET
T ss_pred             Cc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE-------EEeCCCCCceEEEEE-CCEEEEecC
Confidence            32 222222234578999998775555666677889999987533211       222223455677773 333333444


Q ss_pred             cCCcEEEE
Q 035558          244 FSTKLQIL  251 (253)
Q Consensus       244 ~~~~i~vw  251 (253)
                      ..+.|..+
T Consensus       264 ~~~~V~~~  271 (349)
T 3v64_C          264 HTKSINSA  271 (349)
T ss_dssp             TTTEEEEE
T ss_pred             CCCeEEEE
Confidence            44444443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.09  E-value=6.1e-09  Score=82.36  Aligned_cols=194  Identities=9%  Similarity=-0.001  Sum_probs=118.3

Q ss_pred             CEEEEEeCCCeEEEEeccCc----eeeeeee-------cccccEEEEEec-CCCeEEEEeCC------CcEEEEEcCCCC
Q 035558           56 RRIGTSSIDTTCTIWDIERE----AVDTQLI-------AHDKEVYDIAWG-GVGVFASVSAD------GSVRVFDLRDKE  117 (253)
Q Consensus        56 ~~l~~~~~dg~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~  117 (253)
                      .+++++..+++|+++|+.+.    +....+.       .-......+... ++ +++++..+      |.|.++|..+.+
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            34556677889999999755    4555442       011244556666 66 77766655      789999999988


Q ss_pred             CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE------------------eCCCeEEEEECCCCCCCeeeeccc--ccce
Q 035558          118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATII------------------MDSAKVVVLDIRFPTLPVVELQRH--QASV  177 (253)
Q Consensus       118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~~~~~i~~~d~~~~~~~~~~~~~~--~~~i  177 (253)
                      ..............-+.+.|+| +++.++++.                  ..+..|.+||+.+.+ .+.++..-  ....
T Consensus       176 v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P  253 (462)
T 2ece_A          176 PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMA  253 (462)
T ss_dssp             EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCTTEEEE
T ss_pred             EEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCCCCCcc
Confidence            5554433323333455688899 888888875                  224459999998753 35555432  1234


Q ss_pred             eEEEE--ecCCCCeEEEec------CCCcEEEEeccCCCCCCCC--CCCCeee-----------ccCCCceeEEEEcCCC
Q 035558          178 NAIAW--APHSSCHICTAG------DDSQALIWDLSSMGQPVEG--GLDPILA-----------YTAGAEIEQLQWSSSQ  236 (253)
Q Consensus       178 ~~~~~--~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~--~~~~~~~-----------~~~~~~v~~~~~~~~~  236 (253)
                      ..+.|  +|++. ++++++      .+++|.+|....+......  .......           .+-...+..|.++|++
T Consensus       254 ~~i~f~~~Pdg~-~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          254 LELRPLHDPTKL-MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEECSSTTCC-EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             ceeEeeECCCCC-EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence            45555  99994 665554      5778887766542100000  0000000           0012457899999999


Q ss_pred             CceEEEE-cCCcEEEEEC
Q 035558          237 PDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       237 ~~~~~~~-~~~~i~vw~l  253 (253)
                      ++|.++. ..+.|.++++
T Consensus       333 rfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          333 KFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             CEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEe
Confidence            9877655 4678888874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.09  E-value=4.3e-08  Score=83.22  Aligned_cols=184  Identities=10%  Similarity=0.046  Sum_probs=116.4

Q ss_pred             EEEecCCCCCEEEEEeCCCe-------------------EEEEeccCceeeeeeec--cc-------ccEEEEEec-CCC
Q 035558           47 SFDWNEAEPRRIGTSSIDTT-------------------CTIWDIEREAVDTQLIA--HD-------KEVYDIAWG-GVG   97 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~~dg~-------------------i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~   97 (253)
                      .+++. ++..+++.++.++.                   |..+|.++++.+..++.  |.       .++.-.... ++.
T Consensus       239 ~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            56777 66778888887764                   99999999998877763  21       122112222 443


Q ss_pred             ---eEEEEeCCCcEEEEEcCCCCCeeeeeccC-------------------------CCC-----------CCeeEEEee
Q 035558           98 ---VFASVSADGSVRVFDLRDKEHSTIIYESS-------------------------EPD-----------TPLVRLGWN  138 (253)
Q Consensus        98 ---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~~~-----------~~i~~~~~~  138 (253)
                         .++.++.+|.++++|.++++.+.......                         ...           ..-..++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78899999999999999987542111100                         000           011237888


Q ss_pred             CCCCCEEEEEEe---------------------------------------------CCCeEEEEECCCCCCCeeeeccc
Q 035558          139 KQDPRYMATIIM---------------------------------------------DSAKVVVLDIRFPTLPVVELQRH  173 (253)
Q Consensus       139 ~~~~~~l~~~~~---------------------------------------------~~~~i~~~d~~~~~~~~~~~~~~  173 (253)
                      | +..++++...                                             ++. |..||+.+++. +.++..+
T Consensus       398 p-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~-l~A~D~~tG~~-~W~~~~~  474 (689)
T 1yiq_A          398 P-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK-LIAWDPVKQQA-AWEVPYV  474 (689)
T ss_dssp             T-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE-EEEEETTTTEE-EEEEEES
T ss_pred             C-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee-EEEEECCCCCe-EeEccCC
Confidence            8 5556665532                                             144 89999988764 4454433


Q ss_pred             ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                       .+.....+...+ .+++.++.||.++.||.++++..-      ....++.....-+.|..+|+.+++.
T Consensus       475 -~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw------~~~~~~~~~~~p~ty~~~G~qyv~~  535 (689)
T 1yiq_A          475 -TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLW------EQPAASGVMAAPVTYSVDGEQYVTF  535 (689)
T ss_dssp             -SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEE------EEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             -CCccCccceECC-CEEEEECCCCcEEEEECCCCccce------eeeCCCCcccCceEEEECCEEEEEE
Confidence             333444556666 489999999999999999988543      1222333333446777888866653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.07  E-value=3.1e-08  Score=78.74  Aligned_cols=193  Identities=15%  Similarity=0.002  Sum_probs=121.3

Q ss_pred             ecCCCCCEEEEEeCC-----CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe----------CCCcEEEEEc
Q 035558           50 WNEAEPRRIGTSSID-----TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS----------ADGSVRVFDL  113 (253)
Q Consensus        50 ~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----------~dg~i~i~d~  113 (253)
                      .-|++++.++.....     +.|.++|..+++.+..+..-..+  .+.++ +++.++.+.          .++.|.++|.
T Consensus        79 ~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           79 APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            445677776666543     69999999999999888855555  89999 888887775          4678999999


Q ss_pred             CCCCCeeeeecc-CCC---CCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCC
Q 035558          114 RDKEHSTIIYES-SEP---DTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSC  188 (253)
Q Consensus       114 ~~~~~~~~~~~~-~~~---~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  188 (253)
                      .+.+....+... ...   ......+.|+| ++++++++... ...|.++|+.+.+. +..+..-.    +....|++.+
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~  230 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD----CYHIFPASPT  230 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETT
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC----ceeeccCCCc
Confidence            998865555432 110   12456789999 99999988753 44499999998663 45554311    1334455545


Q ss_pred             eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .+++.+.||++.+.+....+..... . .....+.......+.+.+++..++..+..+.+.+.+
T Consensus       231 ~~v~~~~dG~~~~V~~~~~~v~~~~-~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD  292 (426)
T 3c75_H          231 VFYMNCRDGSLARVDFADGETKVTN-T-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD  292 (426)
T ss_dssp             EEEEEETTSSEEEEECCTTCCEEEE-C-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEe-e-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence            6666677788777777443321000 0 000000111112345677777666666666666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.04  E-value=1.3e-07  Score=70.23  Aligned_cols=189  Identities=10%  Similarity=0.016  Sum_probs=124.9

Q ss_pred             CceEEeec---C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            5 PDLLATSS---D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         5 ~~~l~~~~---~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +.++++.+   + .|++.|+.++    +....+.-...    .....+++.  .+.+.++.-.++.+.++|..+.+.+..
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg----~v~~~i~l~~~----~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTG----KVENIHKMDDS----YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTC----CEEEEEECCTT----CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CeEEEECCCCCCCEEEEEECCCC----CEEEEEecCCC----cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            56666654   3 9999999997    66666542210    122355655  234445555678999999999998888


Q ss_pred             eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC--CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558           81 LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSE--PDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus        81 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                      +......-..++. +++.++.+..++.|.++|..+.+....+.....  .-..++.+.|.  ++. +.+.......|.+.
T Consensus       102 i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~-lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          102 FTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGE-VWANIWQTDCIARI  177 (266)
T ss_dssp             EECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTE-EEEEETTSSEEEEE
T ss_pred             EECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCE-EEEecCCCCeEEEE
Confidence            7632122233444 666666666789999999998876555543221  11246778887  454 44444433349999


Q ss_pred             ECCCCCCCeeeeccc-------------ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          159 DIRFPTLPVVELQRH-------------QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       159 d~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      |..+++. +..+...             ....+.++|+|++.++++++...+++.+.++....
T Consensus       178 D~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          178 SAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             ETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             ECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            9998763 4554321             13568999999987788888899999999987754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.03  E-value=4.5e-08  Score=80.08  Aligned_cols=222  Identities=13%  Similarity=-0.008  Sum_probs=140.2

Q ss_pred             CCceEEeec-C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-CCCCEEEEEe-----------------
Q 035558            4 KPDLLATSS-D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-AEPRRIGTSS-----------------   62 (253)
Q Consensus         4 ~~~~l~~~~-~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~-----------------   62 (253)
                      +|++|.... +  .|.+.|+...    ++.+++.-...    ..+..+++.. |++.++++++                 
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~----~~~~ii~ip~g----~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~  171 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVM----KCDAILEIPNA----KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  171 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT----EEEEEEECSSC----CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             CCCEEEEEcCCCCEEEEEECCCc----eEeeEEeCCCC----CCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence            445554444 3  7999999986    66664432211    3467888754 6788888774                 


Q ss_pred             -CCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC----------------------------------
Q 035558           63 -IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG----------------------------------  106 (253)
Q Consensus        63 -~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg----------------------------------  106 (253)
                       .++.+.+.|.++.+....+.--. ....++++ +++++++.+.+.                                  
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence             24578999999988777766322 34556777 777777776442                                  


Q ss_pred             ----cEEEEEcCC--CCC-eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----------Cee
Q 035558          107 ----SVRVFDLRD--KEH-STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----------PVV  168 (253)
Q Consensus       107 ----~i~i~d~~~--~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----------~~~  168 (253)
                          .|.+.|.++  ++. ...+....    ...++.++| +++++++++.....|.++|+.+.+.           ...
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ipvg~----~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~  325 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIPIAN----NPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  325 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEEEES----SCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred             eEECcEEEEeCcccCCceeEEEEecCC----CceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence                477777776  332 22222211    456799999 9998888876665699999985420           112


Q ss_pred             eecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC------CCCCCCCCCeeeccCCCc-----eeEEEEcCCCC
Q 035558          169 ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG------QPVEGGLDPILAYTAGAE-----IEQLQWSSSQP  237 (253)
Q Consensus       169 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~  237 (253)
                      ... -......++|+|+| +..++.-.|+.|.+||+....      ...   ........|-.+     -.++..+|+|+
T Consensus       326 ~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~---~vi~kidV~yqpGh~~~~~g~t~~~DGk  400 (595)
T 1fwx_A          326 EPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVD---PIKDKLDVHYQPGHLKTVMGETLDATND  400 (595)
T ss_dssp             CCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCC---CEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred             EcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccc---eeEEEeecccccccceeccceEeCCCCC
Confidence            222 23457889999999 677788899999999998721      111   001122223222     13345689999


Q ss_pred             ceEEEEc
Q 035558          238 DWVAIAF  244 (253)
Q Consensus       238 ~~~~~~~  244 (253)
                      ++++...
T Consensus       401 ~l~~~Nk  407 (595)
T 1fwx_A          401 WLVCLSK  407 (595)
T ss_dssp             EEEEEES
T ss_pred             EEEEcCC
Confidence            8876553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.00  E-value=3.3e-08  Score=76.12  Aligned_cols=175  Identities=9%  Similarity=-0.077  Sum_probs=106.8

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeE
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVR  134 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~  134 (253)
                      +..+..++.++.|..+|.+ ++...........+.++....+..+..++.++.|..+|.. ++......   .....+.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~  181 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSA  181 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe---cCCCceee
Confidence            4567778888999999998 7766555544445555555523446677888999999988 54322221   22235666


Q ss_pred             EEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558          135 LGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  214 (253)
                      +...+ ++.+++ ++  ++ +..+| .++.. ..........+.++...+++  .|..++.++.+..+|.. +....   
T Consensus       182 ~~~d~-~g~l~v-~t--~~-l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~-g~~~~---  248 (330)
T 3hxj_A          182 ASIGK-DGTIYF-GS--DK-VYAIN-PDGTE-KWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINPD-GTEKW---  248 (330)
T ss_dssp             CEECT-TCCEEE-ES--SS-EEEEC-TTSCE-EEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECTT-SCEEE---
T ss_pred             eEEcC-CCEEEE-Ee--CE-EEEEC-CCCcE-EEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECCC-CCEeE---
Confidence            66665 555444 44  66 99999 54442 44554455668888888887  46667778888888743 22111   


Q ss_pred             CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                          ........+..+...+++. +..++.++.+..++
T Consensus       249 ----~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          249 ----RFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             ----EEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             ----EeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence                1112222333455555554 55666666666554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.97  E-value=4.2e-06  Score=64.23  Aligned_cols=223  Identities=13%  Similarity=0.039  Sum_probs=128.0

Q ss_pred             eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----ceeeeeee
Q 035558            7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----EAVDTQLI   82 (253)
Q Consensus         7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~   82 (253)
                      +|++....|+..+++..    +....+..-      ....+++|++.++.++++-..++.|+.+++..    ......+.
T Consensus         4 ll~~~~~~I~~i~~~~~----~~~~~~~~~------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A            4 LFFTNRHEVRKMTLDRS----EYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             EEEECBSSEEEEETTSC----CCEEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             EEEECCCeEEEEECCCc----ceEehhcCC------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence            44444458999999875    333333332      45779999944555666666678999999875    22222222


Q ss_pred             cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC-CeEEEEE
Q 035558           83 AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS-AKVVVLD  159 (253)
Q Consensus        83 ~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~i~~~d  159 (253)
                      ..-.....+++.  .++++++-...+.|.+.++...... .+...  .......++++| .+..|+.+.... ..|...+
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~--~~~~P~~iavdp-~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFRE--NGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-EEEEC--TTCCEEEEEEET-TTTEEEEEECSSSCEEEEEE
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE-EEEEC--CCCCcceEEeCC-CCCEEEEEccCCCCeEEEEc
Confidence            222345778887  4455556567889999998765422 22221  123678999999 444444444432 3388888


Q ss_pred             CCCCCCCeeee-cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec-cCCCceeEEEEcCCCC
Q 035558          160 IRFPTLPVVEL-QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY-TAGAEIEQLQWSSSQP  237 (253)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~  237 (253)
                      +....  ...+ ...-...+.++++|++.++.++-+..+.|..+|+.......      .... .......++++.. +.
T Consensus       150 ~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~------~~~~~~~~~~P~giav~~-~~  220 (316)
T 1ijq_A          150 LNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------ILEDEKRLAHPFSLAVFE-DK  220 (316)
T ss_dssp             TTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------EEECTTTTSSEEEEEEET-TE
T ss_pred             CCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE------EeecCCccCCcEEEEEEC-CE
Confidence            76432  2322 22234678999999875555666677899999987533211      1111 1233456777743 43


Q ss_pred             ceEEEEcCCcEEEEE
Q 035558          238 DWVAIAFSTKLQILR  252 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~  252 (253)
                      .+++-...+.|..++
T Consensus       221 ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          221 VFWTDIINEAIFSAN  235 (316)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEe
Confidence            333444455555543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.97  E-value=2.4e-07  Score=72.81  Aligned_cols=219  Identities=9%  Similarity=-0.024  Sum_probs=125.4

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      +.+++.+.+ .|..+|..++    +.+.....................   +..++.++.++.|..+|.++++.+.....
T Consensus       144 ~~v~v~~~~g~l~~~d~~tG----~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          144 GLVLIHTSNGQLQALNEADG----AVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTC----CEEEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCC----cEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            334444445 7888888776    444444332200000000111222   45677788899999999999987766542


Q ss_pred             cccc----EEE---EEec---CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           84 HDKE----VYD---IAWG---GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        84 ~~~~----v~~---~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      ....    +..   +...   .+..++.++.++.+..+|.++++..   .....  .....+..   .+..+++++.++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~---w~~~~--~~~~~~~~---~~~~l~~~~~~g~  288 (376)
T 3q7m_A          217 SQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM---WKREL--GSVNDFIV---DGNRIYLVDQNDR  288 (376)
T ss_dssp             CC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE---EEECC--CCEEEEEE---ETTEEEEEETTCC
T ss_pred             ccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE---eeccC--CCCCCceE---ECCEEEEEcCCCe
Confidence            2100    000   1011   4567788888999999999988733   22111  13344444   3567777777888


Q ss_pred             eEEEEECCCCCCCeeeec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeE-EE
Q 035558          154 KVVVLDIRFPTLPVVELQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ-LQ  231 (253)
Q Consensus       154 ~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~-~~  231 (253)
                       +..+|..+++. +.... .....+......  + ..|+.++.+|.+.++|..+++...       ........+.. ..
T Consensus       289 -l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~~~~-------~~~~~~~~~~~~~~  356 (376)
T 3q7m_A          289 -VMALTIDGGVT-LWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGRFVA-------QQKVDSSGFQTEPV  356 (376)
T ss_dssp             -EEEEETTTCCE-EEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEEE-------EEECCTTCBCSCCE
T ss_pred             -EEEEECCCCcE-EEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCcEEE-------EEecCCCcceeCCE
Confidence             99999988763 43333 112222333332  3 378888999999999999876432       11111222221 22


Q ss_pred             EcCCCCceEEEEcCCcEEEEE
Q 035558          232 WSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      . .++ .++.++.++.+..|+
T Consensus       357 ~-~~~-~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          357 A-ADG-KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             E-ETT-EEEEEBTTSCEEEEE
T ss_pred             E-ECC-EEEEEeCCCEEEEEe
Confidence            2 233 588888899999886

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.96  E-value=4.3e-07  Score=66.84  Aligned_cols=200  Identities=12%  Similarity=0.085  Sum_probs=124.5

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCceeeeeeecccccEE--EEEecCCCeEEEEe
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVDTQLIAHDKEVY--DIAWGGVGVFASVS  103 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~  103 (253)
                      +.++++ .|...   .-...+.|+  ++.++.+.+.+|  .|+++|+++++.+..+.-.. ...  .++..++.++...-
T Consensus        32 ~vv~~~-phd~~---~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw  104 (262)
T 3nol_A           32 QIVHSY-PHDTK---AFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTW  104 (262)
T ss_dssp             EEEEEE-ECCTT---CEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEES
T ss_pred             EEEEEe-cCCCC---cccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEe
Confidence            445555 44422   234678887  467777777766  89999999999888776332 332  34444445555556


Q ss_pred             CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cc---ccee
Q 035558          104 ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQ---ASVN  178 (253)
Q Consensus       104 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~---~~i~  178 (253)
                      .++.+.++|..+.+....+....  ++  ..++  + ++..|+.+..++. |.++|..+.+. +..+.-  ..   ..++
T Consensus       105 ~~~~v~v~D~~t~~~~~ti~~~~--eG--~glt--~-dg~~L~~SdGs~~-i~~iDp~T~~v-~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQVRSFNYDG--EG--WGLT--H-NDQYLIMSDGTPV-LRFLDPESLTP-VRTITVTAHGEELPELN  175 (262)
T ss_dssp             SSSEEEEEETTTCCEEEEEECSS--CC--CCEE--E-CSSCEEECCSSSE-EEEECTTTCSE-EEEEECEETTEECCCEE
T ss_pred             eCCEEEEEECccCcEEEEEECCC--Cc--eEEe--c-CCCEEEEECCCCe-EEEEcCCCCeE-EEEEEeccCCccccccc
Confidence            78999999999988655554321  11  2333  4 5666666655655 99999988663 444332  11   2355


Q ss_pred             EEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee-----eccCCCceeEEEEcCCCCceEEEEcC
Q 035558          179 AIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL-----AYTAGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                      .+.|. +| ++.+..-.++.|.+.|.++++...........     ......-.+.|||+|+++.|+..+..
T Consensus       176 ELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          176 ELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             eeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            67876 56 56666667889999999988743210000000     11123467999999998877766643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.96  E-value=1e-07  Score=80.76  Aligned_cols=230  Identities=10%  Similarity=0.033  Sum_probs=135.6

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeC------CCeEEEEeccCc
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSI------DTTCTIWDIERE   75 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~   75 (253)
                      ++.+++.+.+ .|..+|..++    +.+..+...........+.+ ...   .+..++.++.      +|.|+.+|.+++
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG----~~~W~~~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG  200 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATG----KEVWHQNTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETG  200 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTC----CEEEEEETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCC----CEEeeecCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCC
Confidence            3444454456 9999999888    66665554410000011111 111   1345555543      689999999999


Q ss_pred             eeeeeeeccccc--------------------------------EEEEEec-CCCeEEEEeCCC----------------
Q 035558           76 AVDTQLIAHDKE--------------------------------VYDIAWG-GVGVFASVSADG----------------  106 (253)
Q Consensus        76 ~~~~~~~~~~~~--------------------------------v~~~~~~-~~~~l~~~~~dg----------------  106 (253)
                      +.+..+......                                ...+++. +++.++.+..++                
T Consensus       201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~  280 (677)
T 1kb0_A          201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL  280 (677)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence            987766532111                                1246677 677888777664                


Q ss_pred             ---cEEEEEcCCCCCeeeeeccCCCC-------CCeeEEEeeCCCC---CEEEEEEeCCCeEEEEECCCCCCCeeeeccc
Q 035558          107 ---SVRVFDLRDKEHSTIIYESSEPD-------TPLVRLGWNKQDP---RYMATIIMDSAKVVVLDIRFPTLPVVELQRH  173 (253)
Q Consensus       107 ---~i~i~d~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~  173 (253)
                         .|..+|.++++..-..... .+.       ....-+.... ++   ..+++++.+|. ++++|.++++. +..+...
T Consensus       281 ~~~sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~-l~~lD~~tG~~-l~~~~~~  356 (677)
T 1kb0_A          281 YLASIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGF-FFVLDRTNGKF-ISAKNFV  356 (677)
T ss_dssp             TTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTTCCE-EEEEESS
T ss_pred             eeEEEEEEECCCCCEEEEEecC-CCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCE-EEEEECCCCCE-ecccccc
Confidence               5999999998743332221 111       1222233333 55   57788888887 99999988763 3332211


Q ss_pred             c-----------cce------------------------eEEEEecCCCCeEEEecC-----------------------
Q 035558          174 Q-----------ASV------------------------NAIAWAPHSSCHICTAGD-----------------------  195 (253)
Q Consensus       174 ~-----------~~i------------------------~~~~~~~~~~~~l~~~~~-----------------------  195 (253)
                      .           .++                        ..++++|+. .++++...                       
T Consensus       357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~  435 (677)
T 1kb0_A          357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ  435 (677)
T ss_dssp             CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred             ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeecccccccccccccccc
Confidence            0           001                        257889987 46666432                       


Q ss_pred             --------------------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          196 --------------------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       196 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                                          .|.|..||+.+++..        ....+..++.+..+...+..++.++.++.+++|++
T Consensus       436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~--------W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA--------WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE--------EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccCCCCCccEEEEEeCCCCcEE--------eecCCCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                                277999999887632        22233444555556666767778888999999874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.96  E-value=8.2e-07  Score=65.39  Aligned_cols=185  Identities=9%  Similarity=-0.064  Sum_probs=120.7

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccE--EEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEV--YDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      ...+.|+  ++.++.+.+.+|.|+++|+++++.+..+ - ....  ..++...+.++...-.++.+.+||..+.+....+
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            4678887  4677788888899999999999987776 2 2233  3355555556666667999999999998865555


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cc---cceeEEEEecCCCCeEEEecCCC
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQ---ASVNAIAWAPHSSCHICTAGDDS  197 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~dg  197 (253)
                      ...  .  .-..++  + ++..|+.+..++. |.++|..+.+. +..+.-  +.   ..++.+.|. +| ++.+..-.+.
T Consensus       133 ~~~--~--eGwGLt--~-Dg~~L~vSdGs~~-l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~  201 (268)
T 3nok_A          133 RYS--G--EGWGLC--Y-WNGKLVRSDGGTM-LTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NG-VIYANIWHSS  201 (268)
T ss_dssp             ECS--S--CCCCEE--E-ETTEEEEECSSSE-EEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCS
T ss_pred             eCC--C--ceeEEe--c-CCCEEEEECCCCE-EEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CC-EEEEEECCCC
Confidence            432  1  123344  3 5667777666666 99999988663 444432  22   245677877 66 4566665788


Q ss_pred             cEEEEeccCCCCCCCCCCCCee------eccCCCceeEEEEcCCCCceEEEEc
Q 035558          198 QALIWDLSSMGQPVEGGLDPIL------AYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       198 ~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                      .|.+.|.++++...........      ......-.+.|||+|+++.|+..+.
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999988743200000000      1112346799999998877776654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.94  E-value=1.7e-07  Score=73.28  Aligned_cols=71  Identities=10%  Similarity=0.039  Sum_probs=52.9

Q ss_pred             EEeeCCCCCEEEEEEe-C--------CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec-CCCcEEEEec
Q 035558          135 LGWNKQDPRYMATIIM-D--------SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDL  204 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~~-~--------~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~  204 (253)
                      ++++| +++.++++.. .        +. +.++|+.+.+. +..+.... ....++|+|++.+++++.. .++.|.++|+
T Consensus       269 v~~s~-dg~~lyV~~~~~~~~~~~~~~~-~~ViD~~t~~v-v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          269 VAKLK-NTDGIMILTVEHSRSCLAAAEN-TSSVTASVGQT-SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EEEET-TTTEEEEEEEECSSCTTSCEEE-EEEEESSSCCE-EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eEEcC-CCCEEEEEeccccCcccccCCC-EEEEECCCCeE-EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence            68999 7777766543 2        34 77999998764 56555433 5789999999954667777 5999999999


Q ss_pred             cCCCC
Q 035558          205 SSMGQ  209 (253)
Q Consensus       205 ~~~~~  209 (253)
                      .+.+.
T Consensus       345 ~t~kv  349 (368)
T 1mda_H          345 ASDQD  349 (368)
T ss_dssp             SSCEE
T ss_pred             CCCcE
Confidence            99763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.91  E-value=2.4e-07  Score=68.19  Aligned_cols=172  Identities=13%  Similarity=0.084  Sum_probs=111.7

Q ss_pred             CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCee--EEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT--SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ++.++.+.+.  .|+++|+.++    +....+ -.      ....  .+++.  ...+.+..-.++.+.+||.++.+.+.
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tg----kv~~~~-l~------~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESA----QPVWME-RL------GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCS----SCSEEE-EC------TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCC----cEEeEE-CC------CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence            3556666664  8999999987    555554 22      1222  35553  34555555578899999999999998


Q ss_pred             eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC--CCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSE--PDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ++... ..-..+++ +++.|+.+..++.|.++|..+.+....+.....  .-..++.+.|.  ++.+. +.......|.+
T Consensus       131 ti~~~-~eGwGLt~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~ly-anvw~s~~I~v  205 (268)
T 3nok_A          131 TTRYS-GEGWGLCY-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIY-ANIWHSSDVLE  205 (268)
T ss_dssp             EEECS-SCCCCEEE-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEE-EEETTCSEEEE
T ss_pred             EEeCC-CceeEEec-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEE-EEECCCCeEEE
Confidence            88742 22345554 566666666789999999999876555543221  11255677877  56544 45543444999


Q ss_pred             EECCCCCCCeeeecc-------------cccceeEEEEecCCCCeEEEec
Q 035558          158 LDIRFPTLPVVELQR-------------HQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      .|.++++. +..+..             -....+.+|++|++.++++||-
T Consensus       206 IDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          206 IDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            99988763 333321             1236799999998866777765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.90  E-value=2.2e-06  Score=62.50  Aligned_cols=200  Identities=10%  Similarity=-0.029  Sum_probs=123.8

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCceeeeeeeccccc-EEEEEecCCCeEEEEeC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAVDTQLIAHDKE-VYDIAWGGVGVFASVSA  104 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~  104 (253)
                      +.+.++ .|...   .-...+.|+ . +.++.+.+.+|  .|+.+|+++++.+..+.-.... --.++..++.++...-.
T Consensus        10 ~v~~~~-phd~~---~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~   83 (243)
T 3mbr_X           10 RVVKRY-PHDTT---AFTEGLFYL-R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR   83 (243)
T ss_dssp             EEEEEE-ECCTT---CCEEEEEEE-T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred             EEEEEc-CCCCc---cccccEEEE-C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence            455555 45432   345688998 3 56666766654  8999999999988877532221 12344445556666667


Q ss_pred             CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cc---cceeE
Q 035558          105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQ---ASVNA  179 (253)
Q Consensus       105 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~---~~i~~  179 (253)
                      ++.+.++|..+.+....+....  +  -..++  + ++..|+++..++. |.++|..+.+. +.++.-  +.   ..++.
T Consensus        84 ~~~v~v~D~~tl~~~~ti~~~~--~--Gwglt--~-dg~~L~vSdgs~~-l~~iDp~t~~~-~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRARFRYPG--E--GWALT--S-DDSHLYMSDGTAV-IRKLDPDTLQQ-VGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             SSEEEEEETTTTEEEEEEECSS--C--CCEEE--E-CSSCEEEECSSSE-EEEECTTTCCE-EEEEECEETTEECCCEEE
T ss_pred             CCEEEEEECCcCcEEEEEeCCC--C--ceEEe--e-CCCEEEEECCCCe-EEEEeCCCCeE-EEEEEEccCCccccccee
Confidence            9999999999987655554321  2  23444  3 5566666666666 99999988663 444432  21   24566


Q ss_pred             EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC---Cee-e--ccCCCceeEEEEcCCCCceEEEEc
Q 035558          180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD---PIL-A--YTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~-~--~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                      +.|. +| +.++..-.+..|.+.|.++++........   +.. .  .....-.+.|||+|++..|+..+.
T Consensus       155 Le~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          155 LEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            7766 55 45555556889999999998743200000   000 0  112346799999998877776654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.89  E-value=1.7e-06  Score=67.94  Aligned_cols=222  Identities=8%  Similarity=-0.052  Sum_probs=123.0

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCcc----ccCCee-EEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSE----YCGPLT-SFDWNEAEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      ++.++++..+ .|..+|..++    +.+..........    ....+. ....   .+..++.++.++.|..+|.++++.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG----~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDG----KEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTC----CEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCC----ceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCE
Confidence            3445555545 9999999887    5444443321000    002232 2222   356788888999999999999998


Q ss_pred             eeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCC--CCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           78 DTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPD--TPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      +............... .+..++.++.++.|..+|.++++..-.........  ........   .+..++++..++. +
T Consensus       126 ~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~-l  200 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGR-V  200 (376)
T ss_dssp             EEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTE-E
T ss_pred             EEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCE-E
Confidence            7666533221111122 35678888899999999999887433222111000  00011122   2346677777777 9


Q ss_pred             EEEECCCCCCCeeeeccccc--c--------e-eEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          156 VVLDIRFPTLPVVELQRHQA--S--------V-NAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~--~--------i-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      ..+|.++++. +........  .        + .....  .+ ..++.++.++.+..+|.++++...        ... .
T Consensus       201 ~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d~~tG~~~w--------~~~-~  267 (376)
T 3q7m_A          201 SAVLMEQGQM-IWQQRISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALDLRSGQIMW--------KRE-L  267 (376)
T ss_dssp             EEEETTTCCE-EEEEECCC-----------CCCCCCEE--ET-TEEEEECTTSCEEEEETTTCCEEE--------EEC-C
T ss_pred             EEEECCCCcE-EEEEecccCCCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEECCCCcEEe--------ecc-C
Confidence            9999987663 333321110  0        1 01111  13 367888889999999998876332        111 1


Q ss_pred             CceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          225 AEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       225 ~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .....+...  +..++.++.++.+..++
T Consensus       268 ~~~~~~~~~--~~~l~~~~~~g~l~~~d  293 (376)
T 3q7m_A          268 GSVNDFIVD--GNRIYLVDQNDRVMALT  293 (376)
T ss_dssp             CCEEEEEEE--TTEEEEEETTCCEEEEE
T ss_pred             CCCCCceEE--CCEEEEEcCCCeEEEEE
Confidence            223333332  33466666677776665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.89  E-value=6.6e-06  Score=60.73  Aligned_cols=201  Identities=8%  Similarity=0.026  Sum_probs=127.3

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec-ccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA-HDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      ..+..++|+|..+.++++...++.|...|.. ++.+..+.- -......+++. ++.++++.-.++.+.++++.......
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            6799999994445566667788899999998 777776642 22467788888 77766666677889999887665321


Q ss_pred             ---eee-c--cCCCCCCeeEEEeeCCCCCEEEEEEeCCC-eEEEEECCCCCCCeeeec-------ccccceeEEEEecCC
Q 035558          121 ---IIY-E--SSEPDTPLVRLGWNKQDPRYMATIIMDSA-KVVVLDIRFPTLPVVELQ-------RHQASVNAIAWAPHS  186 (253)
Q Consensus       121 ---~~~-~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~  186 (253)
                         ... .  ....+.....++|+| .++.|.++...+. .|..|+-......+..+.       .+...+.+++++|..
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence               111 1  112344678999999 5555555555544 245554111111122221       122357899999987


Q ss_pred             CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec-c------CCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY-T------AGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~------~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .++++.......+.++|....-...      ..+. +      .-...-.|+|.++|. +..++..+.+.+++
T Consensus       185 g~lliLS~~s~~L~~~d~~g~~~~~------~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLVGEVIGE------MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             TEEEEEETTTTEEEEECTTCCEEEE------EECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             CeEEEEECCCCeEEEEcCCCCEEEE------EEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            6777888888999999976542111      1111 1      123678999999997 66667777666553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.87  E-value=3.1e-07  Score=77.97  Aligned_cols=229  Identities=7%  Similarity=0.021  Sum_probs=129.9

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC--CCCCEEEEEe------CCCeEEEEeccCc
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE--AEPRRIGTSS------IDTTCTIWDIERE   75 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~------~dg~i~vwd~~~~   75 (253)
                      +.+++.+.+ .|..+|..++    +.+..+......   .....+..+|  .++ .++.+.      .+|.|+.||.+++
T Consensus       122 g~v~v~~~dg~l~AlDa~TG----~~~W~~~~~~~~---~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG  193 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTG----QRAWSVDTRADH---KRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETG  193 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTC----CEEEEEECCSCT---TSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             CEEEEEccCCEEEEEECCCC----CEeeeecCcCCC---CCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCC
Confidence            444444446 9999999888    555554432000   0001111110  134 444443      3689999999999


Q ss_pred             eeeeeeeccc-------------------------------ccEEEEEec-CCCeEEEEeCCCc----------------
Q 035558           76 AVDTQLIAHD-------------------------------KEVYDIAWG-GVGVFASVSADGS----------------  107 (253)
Q Consensus        76 ~~~~~~~~~~-------------------------------~~v~~~~~~-~~~~l~~~~~dg~----------------  107 (253)
                      +.+..+....                               ..-..+++. +.++++.+..++.                
T Consensus       194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y  273 (689)
T 1yiq_A          194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF  273 (689)
T ss_dssp             CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred             cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            9876654210                               001246676 6788888887764                


Q ss_pred             ---EEEEEcCCCCCeeeeeccCC------CCCCeeEEEeeCCCCC---EEEEEEeCCCeEEEEECCCCCCCeeeeccc--
Q 035558          108 ---VRVFDLRDKEHSTIIYESSE------PDTPLVRLGWNKQDPR---YMATIIMDSAKVVVLDIRFPTLPVVELQRH--  173 (253)
Q Consensus       108 ---i~i~d~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~---~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--  173 (253)
                         |..+|.++++..-.......      ...+........ ++.   .++.++.+|. ++++|.++++. +......  
T Consensus       274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~~-l~~~~~~~~  350 (689)
T 1yiq_A          274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGF-FYVIDRATGEL-LSAKGIVPQ  350 (689)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTTCCE-EEEEESSCC
T ss_pred             eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCe-EEEEECCCCCE-ecccccccc
Confidence               99999999974332222111      111222222222 443   6777777887 99999988763 3111100  


Q ss_pred             --------------------------c-----------cceeEEEEecCCCCeEEEecC---------------------
Q 035558          174 --------------------------Q-----------ASVNAIAWAPHSSCHICTAGD---------------------  195 (253)
Q Consensus       174 --------------------------~-----------~~i~~~~~~~~~~~~l~~~~~---------------------  195 (253)
                                                .           ..-..++|+|+. .++++...                     
T Consensus       351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~~~~~~~~  429 (689)
T 1yiq_A          351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEAPKRNPFKSM  429 (689)
T ss_dssp             SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred             ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeeccccccccccccc
Confidence                                      0           001237888887 46665422                     


Q ss_pred             ------------------------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          196 ------------------------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       196 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                                              +|.|+.||+.+++..-        ...+..+...-.+...+..++.++.|+.++.|
T Consensus       430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W--------~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~  501 (689)
T 1yiq_A          430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW--------EVPYVTIFNGGTLSTAGNLVFEGSADGRVIAY  501 (689)
T ss_dssp             CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE--------EEEESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred             cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe--------EccCCCCccCccceECCCEEEEECCCCcEEEE
Confidence                                    3778889998876332        22223333334555566677788899999998


Q ss_pred             EC
Q 035558          252 RV  253 (253)
Q Consensus       252 ~l  253 (253)
                      +.
T Consensus       502 D~  503 (689)
T 1yiq_A          502 AA  503 (689)
T ss_dssp             ET
T ss_pred             EC
Confidence            74

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.87  E-value=1.4e-05  Score=63.39  Aligned_cols=186  Identities=13%  Similarity=0.022  Sum_probs=113.8

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----eeeee
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----VDTQL   81 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~   81 (253)
                      +|..+.. .|+..+++..    .....+...      ..+..++|++.++.++++-...+.|+.+++....    ....+
T Consensus        85 ~ll~~~~~~I~~i~l~~~----~~~~~~~~~------~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~  154 (400)
T 3p5b_L           85 YLFFTNRHEVRKMTLDRS----EYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI  154 (400)
T ss_dssp             EEEEEETTEEEEECTTSC----SCEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred             eeEEeccceeEEEccCCc----ceeEecccc------CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence            4444444 8888888774    333333322      4678999994455555655567889999887521    22222


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-e-CCCeEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-M-DSAKVVV  157 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~-~~~~i~~  157 (253)
                      .........+++.  .++++.+-...+.|.+.++........+..   .......++++| .+..|+... . .+. |..
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~---~~~~P~~iavdp-~~g~ly~td~~~~~~-I~~  229 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDP-VHGFMYWTDWGTPAK-IKK  229 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC---SSCCEEEEEEET-TTTEEEEEECSSSCC-EEE
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC---CCCCcceEEEec-ccCeEEEEeCCCCCE-EEE
Confidence            2233456778887  555666666788999999886653323221   222578999999 444554444 2 245 888


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .++..... .......-...+.|+++|++.++.++-...+.|..+|+....
T Consensus       230 ~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          230 GGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             EETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             EeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            88875332 222232335678999998875455555667899999987543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.85  E-value=1.2e-05  Score=61.32  Aligned_cols=218  Identities=7%  Similarity=-0.016  Sum_probs=122.0

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-C-eEEEEeccCceeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-T-TCTIWDIEREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-~i~vwd~~~~~~~~   79 (253)
                      +++++++.. + .|..|+.+..     ....+.. .     .....+++. ++++++++.... + .|..++..+++...
T Consensus        42 ~g~lyv~d~~~~~I~~~d~~g~-----~~~~~~~-~-----~~p~gia~~-~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           42 DGTIFVTNHEVGEIVSITPDGN-----QQIHATV-E-----GKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             TSCEEEEETTTTEEEEECTTCC-----EEEEEEC-S-----SEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCCEEEEeCCCCeEEEECCCCc-----eEEEEeC-C-----CCceeEEEc-CCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            556666654 3 8888887652     2222222 1     357889999 778866655432 2 46667777766432


Q ss_pred             eee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee-ee------ccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           80 QLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI-IY------ESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        80 ~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ... ........++.. ++..+++-..++.|..+|..+++.... ..      .....-.....+  +| ++..++++..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~  186 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNT  186 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEET
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeC
Confidence            221 111223444444 444555555688899988765421110 00      001111134445  77 6777777666


Q ss_pred             CCCeEEEEECCC-CCC-CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          151 DSAKVVVLDIRF-PTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       151 ~~~~i~~~d~~~-~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      ....|..+|+.. ... ....+. .......++++++| +++++....+.|.++|.. ++...     ..........++
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~~~~-----~~~~~~~~~~p~  258 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTI-----IAQAEQGVIGST  258 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CCEEE-----EECGGGTCTTEE
T ss_pred             CCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCC-CEEEEeCCCCeEEEECCC-CCEEE-----EeecccccCCce
Confidence            555599999874 221 111111 11345778999999 577777778899999865 32110     001111235688


Q ss_pred             EEEEc---CCCCceEEEEc
Q 035558          229 QLQWS---SSQPDWVAIAF  244 (253)
Q Consensus       229 ~~~~~---~~~~~~~~~~~  244 (253)
                      +++|.   |++..|+.+..
T Consensus       259 ~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          259 AVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEECCSTTTTTEEEEEEC
T ss_pred             EEEEecccCCCCEEEEECC
Confidence            99998   88766665443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.85  E-value=1e-06  Score=64.19  Aligned_cols=172  Identities=13%  Similarity=0.132  Sum_probs=110.0

Q ss_pred             CceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCe--eEEEecCCCCCEEEEEeCCCeEEEEeccCceee
Q 035558            5 PDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPL--TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         5 ~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +.++.+++.    .|+.+|+.++    +.........      ..  -.++..  .+++....-.++.+.++|.++.+.+
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tg----kv~~~~~l~~------~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETG----RILQRAEVPP------PYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTC----CEEEEEECCT------TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             CEEEEECCCCCCceEEEEECCCC----CEEEEEeCCC------CcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE
Confidence            455555553    8999999997    6666655432      22  234443  3445555557889999999999999


Q ss_pred             eeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC--CCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           79 TQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSE--PDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      .++.... .-..++. ++..|+.+..++.|.++|..+.+....+.....  .-..++.+.+.  ++.+++..-.++. |.
T Consensus        99 ~ti~~~~-~Gwglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~-I~  173 (243)
T 3mbr_X           99 ARFRYPG-EGWALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSR-IA  173 (243)
T ss_dssp             EEEECSS-CCCEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTE-EE
T ss_pred             EEEeCCC-CceEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCe-EE
Confidence            8887432 3345554 456666666688999999999876555443211  11255667776  5555544333444 99


Q ss_pred             EEECCCCCCCeeeecc-------------cccceeEEEEecCCCCeEEEec
Q 035558          157 VLDIRFPTLPVVELQR-------------HQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      +.|.++++. +..+..             .....+.++++|++.++++||-
T Consensus       174 vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          174 RIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            999988763 333221             1235799999998866666665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.83  E-value=3.5e-07  Score=67.27  Aligned_cols=173  Identities=13%  Similarity=0.127  Sum_probs=108.9

Q ss_pred             CCceEEeecC----cEEEEEccCCccccceeeeecCCCCccccCCee--EEEecCCCCCEEEEEeCCCeEEEEeccCcee
Q 035558            4 KPDLLATSSD----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLT--SFDWNEAEPRRIGTSSIDTTCTIWDIEREAV   77 (253)
Q Consensus         4 ~~~~l~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   77 (253)
                      ++.++.+++.    .|+++|+.++    +....+....      ...  .++..  ...+.+..-.++.+.++|.++.+.
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tg----kv~~~~~l~~------~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESG----KTLQQIELGK------RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTC----CEEEEEECCT------TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCCCceEEEEECCCC----cEEEEEecCC------ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence            3555666552    8999999997    6666655432      233  34443  234444444688999999999999


Q ss_pred             eeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC--CCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           78 DTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESS--EPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                      +.++.... .-..+++ ++..|+.+..++.|.++|..+.+....+....  ..-..++.+.|.  ++.+. +.......|
T Consensus       120 ~~ti~~~~-eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~ly-an~w~~~~I  194 (262)
T 3nol_A          120 VRSFNYDG-EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIF-ANVWQTNKI  194 (262)
T ss_dssp             EEEEECSS-CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEE-EEETTSSEE
T ss_pred             EEEEECCC-CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEE-EEEccCCeE
Confidence            98887422 2234444 56666666667889999999887655544321  111245667876  56544 445434449


Q ss_pred             EEEECCCCCCCeeeecc------------cccceeEEEEecCCCCeEEEec
Q 035558          156 VVLDIRFPTLPVVELQR------------HQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      .+.|.++++. +..+..            -....+.+||+|++.+++++|-
T Consensus       195 ~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          195 VRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            9999988763 333321            1235699999999865555554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.79  E-value=1.8e-05  Score=60.68  Aligned_cols=226  Identities=8%  Similarity=-0.013  Sum_probs=128.1

Q ss_pred             CceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-eeec
Q 035558            5 PDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-QLIA   83 (253)
Q Consensus         5 ~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~   83 (253)
                      +.+|++....|+..+++...  ......+.+-      ....+++|++.++.++++-...+.|+.+++....... .+..
T Consensus         5 p~ll~~~~~~I~~i~l~~~~--~~~~~~~~~~------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~   76 (318)
T 3sov_A            5 PLLLYANRRDLRLVDATNGK--ENATIVVGGL------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS   76 (318)
T ss_dssp             CEEEEECEEEEEEEETTCTT--SCCEEEEEEE------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred             cEEEEEccCeEEEEECCCCc--eEEEEEecCC------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence            33444443499999998741  0111122222      2456899995456666666677899999987653222 2222


Q ss_pred             ccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCCeEEEEEC
Q 035558           84 HDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSAKVVVLDI  160 (253)
Q Consensus        84 ~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~~i~~~d~  160 (253)
                      .-.....+++.  .+.++.+-...+.|.++++...... .+..  ........++++| .+..|+.+.. ....|...++
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~--~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~  152 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFW--QELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGM  152 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC--SSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEET
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EEEe--CCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEc
Confidence            22345667777  5556666667789999998765432 2221  2223678899998 4445555443 2233888887


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      ..... .......-...+.++++|++.++.++-+..+.|..+|+.......       ...+......++++..+ ..+.
T Consensus       153 dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~-------~~~~~~~~P~glav~~~-~lyw  223 (318)
T 3sov_A          153 DGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA-------VVKGSLPHPFALTLFED-ILYW  223 (318)
T ss_dssp             TSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------EECSCCSCEEEEEEETT-EEEE
T ss_pred             CCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE-------EecCCCCCceEEEEeCC-EEEE
Confidence            64322 222222234568999999775555666678899999987533211       22223445566666432 2233


Q ss_pred             EEEcCCcEEEE
Q 035558          241 AIAFSTKLQIL  251 (253)
Q Consensus       241 ~~~~~~~i~vw  251 (253)
                      +-...+.|..+
T Consensus       224 td~~~~~V~~~  234 (318)
T 3sov_A          224 TDWSTHSILAC  234 (318)
T ss_dssp             EETTTTEEEEE
T ss_pred             EecCCCeEEEE
Confidence            33334444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.75  E-value=2.4e-05  Score=61.71  Aligned_cols=190  Identities=7%  Similarity=-0.086  Sum_probs=112.1

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .++.++.+-..  .|+.++++..    .....+....     .....+++.+..+.++++-...+.|.+.++........
T Consensus       126 ~~~~ly~~D~~~~~I~r~~~~g~----~~~~~~~~~~-----~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l  196 (386)
T 3v65_B          126 RRELVFWSDVTLDRILRANLNGS----NVEEVVSTGL-----ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  196 (386)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSC----CEEEEECSSC-----SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE
T ss_pred             CCCeEEEEeCCCCcEEEEecCCC----CcEEEEeCCC-----CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe
Confidence            34445544332  6777776653    2222222211     23457788744566666666678899988875433322


Q ss_pred             eecccccEEEEEec-CCCe-EEEEeCC-CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGV-FASVSAD-GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~-l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      +...-.....+++. .+.. +.+-... +.|..+++..........   ..-.....|+++| ++..|+.+......|..
T Consensus       197 ~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGlavd~-~~~~lY~aD~~~~~I~~  272 (386)
T 3v65_B          197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDY-AGRRMYWVDAKHHVIER  272 (386)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEEEG-GGTEEEEEETTTTEEEE
T ss_pred             ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE---CCCCCeeeEEEeC-CCCEEEEEECCCCEEEE
Confidence            33333567888998 4444 4444444 778888887654322221   1122578899998 56666666655555999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      +|+..... ...+........++++. .+ .++++-...+.|..++..++.
T Consensus       273 ~d~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          273 ANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             ECTTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             EeCCCCee-EEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCc
Confidence            99875332 22333334456788884 33 577777788899998865554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.72  E-value=4.2e-06  Score=64.32  Aligned_cols=189  Identities=11%  Similarity=0.039  Sum_probs=111.9

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec--------------------ccccEEEEEec-CCCeEEEEe
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA--------------------HDKEVYDIAWG-GVGVFASVS  103 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~~-~~~~l~~~~  103 (253)
                      ..+++|. +++++++++..++.|..|+..+++.. .+..                    ....+..+++. +...|+.+.
T Consensus        21 p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           21 PNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCEECC-TTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            4578898 77887888888999999998765432 1210                    11357888887 455666665


Q ss_pred             CCCcEEEEEcCCCCCeeeeeccC-CCCCCeeEEEeeCCCCCEEEEEEe-----------------CCCeEEEEECCCCCC
Q 035558          104 ADGSVRVFDLRDKEHSTIIYESS-EPDTPLVRLGWNKQDPRYMATIIM-----------------DSAKVVVLDIRFPTL  165 (253)
Q Consensus       104 ~dg~i~i~d~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~-----------------~~~~i~~~d~~~~~~  165 (253)
                      ..+.|..+|..++.......... ........+++.+.++++.++-..                 .+. |..+|..+.. 
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~~~-  176 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR-LIKYDPSTKE-  176 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE-EEEEETTTTE-
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce-EEEEeCCCCE-
Confidence            55568888876543211111111 111246778888734555554322                 234 8888876543 


Q ss_pred             CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       166 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                       +..+.......+.++++|++..++++-...+.|.+|++.......     ......... ...+++.++|..+++...
T Consensus       177 -~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-----~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          177 -TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-----AEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             -EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-----EEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             -EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-----cceEEeCCC-CCCeEECCCCCEEEEecC
Confidence             222222223457899999984244454667899999987532110     011111223 788999999986666543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.71  E-value=1.9e-05  Score=60.15  Aligned_cols=195  Identities=10%  Similarity=0.050  Sum_probs=111.7

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC--cEEEEEcCCCCCee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG--SVRVFDLRDKEHST  120 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~  120 (253)
                      ....++|+ ++++++++-..++.|..||.... ....+. ....+..+++. +++++++.....  .|..+|..+++.. 
T Consensus        33 ~pegia~~-~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-  108 (306)
T 2p4o_A           33 FLENLASA-PDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-  108 (306)
T ss_dssp             CEEEEEEC-TTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-
T ss_pred             CcceEEEC-CCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-
Confidence            46689999 68887777667899999998753 333232 34568899999 888666554332  4666776666532 


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee---------ecccccceeEEEEecCCCCeEE
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE---------LQRHQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~  191 (253)
                      .+..... ......++..+ ++..+++-...+. |+++|.......+..         ....-...+.+  +|++..+++
T Consensus       109 ~~~~~~~-~~~~~g~~~~~-~~~~~v~d~~~g~-i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          109 TLLTLPD-AIFLNGITPLS-DTQYLTADSYRGA-IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV  183 (306)
T ss_dssp             EEEECTT-CSCEEEEEESS-SSEEEEEETTTTE-EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred             EEEeCCC-ccccCcccccC-CCcEEEEECCCCe-EEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence            2222211 11234444443 4433433333555 999997643110110         00111234555  788744556


Q ss_pred             EecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          192 TAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       192 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +-...+.|..|++.......    . ............+++.++|..+++....+.|.+++
T Consensus       184 ~d~~~~~I~~~~~~~~g~~~----~-~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDSTDKPG----E-PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             EETTTTEEEEEEBCTTSCBC----C-CEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             EeCCCCEEEEEEeCCCCCCC----c-cEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence            66678899999987521111    0 11111124567789999997666666677777764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.69  E-value=5.1e-05  Score=59.01  Aligned_cols=158  Identities=8%  Similarity=-0.102  Sum_probs=98.3

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCC-eEEEEeCC-CcEEEEEcCCCCCee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVG-VFASVSAD-GSVRVFDLRDKEHST  120 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d-g~i~i~d~~~~~~~~  120 (253)
                      ....+++.+..+.++++-...+.|.+.++........+...-.....+++. .+. ++.+-... +.|..+++.......
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  196 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI  196 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence            346788874456666666677899999987543332232333567889998 444 44454444 788888887654222


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      ...   ..-.....++++| ++..|..+......|..+|+..... ...+........++++. .+ .++++-...+.|.
T Consensus       197 ~~~---~~~~~PnGla~d~-~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~  269 (349)
T 3v64_C          197 IAD---THLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSIN  269 (349)
T ss_dssp             SCC---SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEE
T ss_pred             EEE---CCCCCcceEEEeC-CCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEE
Confidence            211   1223578899999 5666666665555599999875332 22233333456778884 34 4667777788888


Q ss_pred             EEeccCCC
Q 035558          201 IWDLSSMG  208 (253)
Q Consensus       201 iwd~~~~~  208 (253)
                      .++..+++
T Consensus       270 ~~~~~~G~  277 (349)
T 3v64_C          270 SANKFTGK  277 (349)
T ss_dssp             EEETTTCC
T ss_pred             EEEccCCC
Confidence            88855544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.66  E-value=6.6e-06  Score=67.51  Aligned_cols=193  Identities=10%  Similarity=0.030  Sum_probs=125.4

Q ss_pred             CCCEEEEEeC-CCeEEEEeccCceeeeeeec-ccccEEEEEec---CCCeEEEEe------------------CCCcEEE
Q 035558           54 EPRRIGTSSI-DTTCTIWDIEREAVDTQLIA-HDKEVYDIAWG---GVGVFASVS------------------ADGSVRV  110 (253)
Q Consensus        54 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~---~~~~l~~~~------------------~dg~i~i  110 (253)
                      ++++++.... ++.|.+.|+.+.+....+.- ....+..+++.   +++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            5667666554 55799999999987774431 22457788873   677777774                  3467999


Q ss_pred             EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--------------------------------------
Q 035558          111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--------------------------------------  152 (253)
Q Consensus       111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--------------------------------------  152 (253)
                      .|..+.+....+....    ...-++++| +++++++.+.+.                                      
T Consensus       180 ID~~t~~v~~qI~Vgg----~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG----NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EETTTTEEEEEEEESS----CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EECCCCeEEEEEEeCC----CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            9999876444443322    234577888 788888877554                                      


Q ss_pred             CeEEEEECCC--CCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC----CCCCCCCeeeccCCCc
Q 035558          153 AKVVVLDIRF--PTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP----VEGGLDPILAYTAGAE  226 (253)
Q Consensus       153 ~~i~~~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~  226 (253)
                      . |.+.|.++  ....+..+.. .....++.++|||...++++..+.+|.++|+.+.+..    ............-+..
T Consensus       255 ~-V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g  332 (595)
T 1fwx_A          255 G-VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  332 (595)
T ss_dssp             T-EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred             c-EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence            3 67777776  3221233332 3356789999999545556668999999999965210    0000001122234567


Q ss_pred             eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          227 IEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...++|+|+|..+++.-.++.|.+|++
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEh
Confidence            889999999954457778999999974

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.64  E-value=4.5e-05  Score=58.50  Aligned_cols=192  Identities=15%  Similarity=0.107  Sum_probs=108.3

Q ss_pred             CCeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeeeeeec-----ccccEEEEEec--CCCeEEEEeC----------
Q 035558           43 GPLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDTQLIA-----HDKEVYDIAWG--GVGVFASVSA----------  104 (253)
Q Consensus        43 ~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~l~~~~~----------  104 (253)
                      ..+..+++. + +++ |+.+...+.|..+|..+++. ..+..     .......+++.  +++++++-..          
T Consensus        80 ~~p~gi~~~-~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           80 GRTYDISYN-LQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             CCEEEEEEE-TTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred             CCCceEEEc-CCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence            357789998 5 555 55555555688888875542 22211     11246777776  3455544322          


Q ss_pred             -------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-Ceeeecccccc
Q 035558          105 -------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQAS  176 (253)
Q Consensus       105 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~  176 (253)
                             ++.|..+|..+++........    .....++++| +++.++++......|..|++..... ....+....+ 
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~----~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-  230 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKETTLLLKEL----HVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-  230 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEEEEEEEEE----SCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-
T ss_pred             ehcccCCCceEEEEeCCCCEEEEeccCC----ccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-
Confidence                   366888887665422222111    1345789999 8887766655433499999875321 1222221223 


Q ss_pred             eeEEEEecCCCCeEEEecC----------CCcEEEEeccCCCCCCCCCCCCeeeccC----CCceeEEEEcCCCCceEEE
Q 035558          177 VNAIAWAPHSSCHICTAGD----------DSQALIWDLSSMGQPVEGGLDPILAYTA----GAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       177 i~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~  242 (253)
                      ...+++.++| ++.++...          .+.|..+|.. ++...       .....    ...+..+++ .++..+++.
T Consensus       231 P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~-------~~~~~~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          231 PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILE-------VIPLPPPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEE-------EEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEEE-------EEECCCCCccccceEEEE-eCCEEEEee
Confidence            7789999998 45555443          4667777764 22111       11111    245666766 456555555


Q ss_pred             EcCCcEEEEEC
Q 035558          243 AFSTKLQILRV  253 (253)
Q Consensus       243 ~~~~~i~vw~l  253 (253)
                      ...+.|..+++
T Consensus       301 ~~~~~i~~~~~  311 (322)
T 2fp8_A          301 LFHGSVGILVY  311 (322)
T ss_dssp             SSCSEEEEEEC
T ss_pred             cCCCceEEEec
Confidence            56778887764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=0.00018  Score=61.95  Aligned_cols=186  Identities=14%  Similarity=0.041  Sum_probs=111.4

Q ss_pred             EEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc----eeeeeee
Q 035558            8 LATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE----AVDTQLI   82 (253)
Q Consensus         8 l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~   82 (253)
                      |..+.. .|+..++...    .....+...      ..+..++|.+.++.++++-...+.|+.+++...    .....+.
T Consensus       398 Ll~an~~~Ir~i~l~~~----~~~~l~~~~------~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          398 LFFTNRHEVRKMTLDRS----EYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             EEEECBSSEEEECTTSC----CCEEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             cccccccceeEeeccCC----cceeeecCC------CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            333444 7777777663    333333332      457789998445666666666788999988753    2222222


Q ss_pred             cccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe-CCCeEEEEE
Q 035558           83 AHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM-DSAKVVVLD  159 (253)
Q Consensus        83 ~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~~i~~~d  159 (253)
                      ..-.....|++.  .++++++-...+.|.+.++.......++.   ........|+++| ....|+.+.. ....|...+
T Consensus       468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~---~~l~~P~gIaVDp-~~g~LYwtD~g~~~~I~~~~  543 (791)
T 3m0c_C          468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGG  543 (791)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEET-TTTEEEEEECSSSCEEEEEE
T ss_pred             cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe---CCCCCcceEEEec-CCCCEEEecCCCCCeEEEEe
Confidence            233455678887  44566666778899999998665322222   1222578999999 4444544443 313488888


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      +..... ...+...-...+.|++++.+.+++++-...+.|..+++....
T Consensus       544 ~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          544 LNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             TTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            865332 222222335688999998774455555567789999886543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.59  E-value=0.00024  Score=61.48  Aligned_cols=196  Identities=9%  Similarity=0.016  Sum_probs=119.0

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR  114 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~  114 (253)
                      ..|.++... .++. |..|+.++-|..++..+..... +.       -....|.++... +++ |-.|+.++-|..||..
T Consensus       310 ~~i~~i~~D-~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          310 RSVRSIFMD-SQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPI  385 (795)
T ss_dssp             SCEEEEEEC-TTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTT
T ss_pred             CcEEEEEEe-CCcC-EEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCC
Confidence            578999887 6665 5567777778889876554221 11       023568888887 555 4456777679999987


Q ss_pred             CCCCeeeeecc-----CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec-----ccccceeEEEEec
Q 035558          115 DKEHSTIIYES-----SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ-----RHQASVNAIAWAP  184 (253)
Q Consensus       115 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~~  184 (253)
                      ++.........     ......|.++...+ ++++|.+|+.+++ |..||..+..  ...+.     .....|.++...+
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~G-l~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~  461 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGG-LSILHRNSGQ--VENFNQRNSQLVNENVYAILPDG  461 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTE-EEEEETTTCC--EEEECTTTSCCSCSCEEEEEECS
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCc-eeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECC
Confidence            76522211111     11234788998887 6774666777777 9999987654  33332     1245789999888


Q ss_pred             CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          185 HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       185 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++ . |..|+. +-+.+||..+......... .....-....|.++...+++..+++. . +.+..|+
T Consensus       462 ~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~  523 (795)
T 4a2l_A          462 EG-N-LWLGTL-SALVRFNPEQRSFTTIEKE-KDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFK  523 (795)
T ss_dssp             SS-C-EEEEES-SCEEEEETTTTEEEECCBC-TTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEE
T ss_pred             CC-C-EEEEec-CceeEEeCCCCeEEEcccc-ccccccCCceEEEEEECCCCCEEEEe-C-CceEEEe
Confidence            87 3 444444 4588898776432110000 00001124678999999998755544 3 4566554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.58  E-value=9e-05  Score=59.38  Aligned_cols=233  Identities=6%  Similarity=-0.011  Sum_probs=126.1

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC---C-eEEEEeccCceee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID---T-TCTIWDIEREAVD   78 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~vwd~~~~~~~   78 (253)
                      ++.++++-.. .|+.++...+    ... .+....     .....++++ ++++++++-...   . .+...+...+...
T Consensus       152 ~g~Lyv~D~~~~I~~id~~~g----~v~-~~~~~~-----~~P~giavd-~dG~lyVad~~~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          152 YDDLYWVGQRDAFRHVDFVNQ----YVD-IKTTNI-----GQCADVNFT-LNGDMVVVDDQSSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             TCEEEEECBTSCEEEEETTTT----EEE-EECCCC-----SCEEEEEEC-TTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred             CCEEEEEeCCCCEEEEECCCC----EEE-EeecCC-----CCccEEEEC-CCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence            4666666554 8888888664    333 332222     457899999 788855444321   1 2333333222110


Q ss_pred             -eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeE
Q 035558           79 -TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKV  155 (253)
Q Consensus        79 -~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i  155 (253)
                       ..+. .-.....++++  ++.++++-..++.|+.+|..++.....+..... ...-..++|+| +++.|+++......|
T Consensus       221 ~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-~~~~~~ia~dp-dG~~LYvad~~~~~I  297 (433)
T 4hw6_A          221 RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-KGSNFHIVWHP-TGDWAYIIYNGKHCI  297 (433)
T ss_dssp             EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-CSSCEEEEECT-TSSEEEEEETTTTEE
T ss_pred             ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-CCCcccEEEeC-CCCEEEEEeCCCCEE
Confidence             1111 12334567777  445555555678899999886653122222211 12334699999 888777766655559


Q ss_pred             EEEECCCCCCC---eeeeccc---------------ccceeEEEE---------ecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          156 VVLDIRFPTLP---VVELQRH---------------QASVNAIAW---------APHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       156 ~~~d~~~~~~~---~~~~~~~---------------~~~i~~~~~---------~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      ..++.......   ...+.+.               -.....+++         .+++ .++++-...+.|+.++.. +.
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~-G~  375 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPE-GR  375 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTT-SE
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCC-CC
Confidence            99886532110   1111111               123567899         6666 466676777889998752 22


Q ss_pred             CCCCCCCCC----e------eeccCCCceeEEEEc-CCCCceEEEEcCCcEEEEE
Q 035558          209 QPVEGGLDP----I------LAYTAGAEIEQLQWS-SSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       209 ~~~~~~~~~----~------~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~i~vw~  252 (253)
                      .........    -      .....-.....|++. +++..+++=..++.|+.++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            110000000    0      000112347899999 6676555666677787765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.54  E-value=1.7e-06  Score=73.52  Aligned_cols=179  Identities=13%  Similarity=0.012  Sum_probs=102.5

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccC----ceeeeeeecccccEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER----EAVDTQLIAHDKEVY   89 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~   89 (253)
                      .|+..++...    .....+...      ..+..++|++..+.++++-...+.|+.+++..    ......+...-....
T Consensus       387 ~I~~id~~~~----~~~~~~~~~------~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~  456 (699)
T 1n7d_A          387 EVRKMTLDRS----EYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  456 (699)
T ss_dssp             C-CEECTTSC----CEECCSCCC------TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred             ceEEEeCCCC----cceeeeccC------cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence            7777777664    333333222      34568899833444444444567899999875    222222221122345


Q ss_pred             EEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCC
Q 035558           90 DIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLP  166 (253)
Q Consensus        90 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~  166 (253)
                      .|++.  .++++++-...+.|.++++........+.   ........++++|..+.++++-... +. |..+++..... 
T Consensus       457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG~~~-  531 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDI-  531 (699)
T ss_dssp             CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSSCCC-
T ss_pred             eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCCCCe-
Confidence            67776  45555665667889999987654222221   1112456789998444444443222 45 88887764332 


Q ss_pred             eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          167 VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       167 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      ...+...-...+.|+|+|++.+++++-+..+.|..+++...
T Consensus       532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            11112223456789999987556667677889999998653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=7.1e-05  Score=59.94  Aligned_cols=231  Identities=9%  Similarity=0.061  Sum_probs=122.3

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CC----eEEEEeccCcee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DT----TCTIWDIEREAV   77 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~   77 (253)
                      ++.++++-.. .|+.+|+..+    .. ..+....     .....++|+ ++++.|+.+.. ++    .+.+.+.. +..
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~----~v-~~~~~~~-----~~P~~ia~d-~~G~~lyvad~~~~~~~~~v~~~~~~-g~~  216 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKE----YV-STVYSGL-----SKVRTICWT-HEADSMIITNDQNNNDRPNNYILTRE-SGF  216 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTT----EE-EEEECCC-----SCEEEEEEC-TTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred             CCeEEEEeCCCcEEEEECCCC----EE-EEEecCC-----CCcceEEEe-CCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence            4555555554 7888888763    32 2222222     457899999 78885555543 22    34434433 322


Q ss_pred             e--eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           78 D--TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        78 ~--~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      .  ..+.. ......++++  ++.++++-..++.|..++........ +..... ......++|+| ++++|+++.....
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~-~~~~~~-~~~P~gia~~p-dG~~lyv~d~~~~  292 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP-LFTIQD-SGWEFHIQFHP-SGNYAYIVVVNQH  292 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE-EEECSS-SSCCEEEEECT-TSSEEEEEETTTT
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEEcCC-CCcceeEEEcC-CCCEEEEEECCCC
Confidence            1  22221 2335667787  45555565677889999988654212 222111 23567899999 8887777666555


Q ss_pred             eEEEEECCCCCCC---eeeeccc---------------cccee-EEEEe--------cCCCCeEEEecCCCcEEEEeccC
Q 035558          154 KVVVLDIRFPTLP---VVELQRH---------------QASVN-AIAWA--------PHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       154 ~i~~~d~~~~~~~---~~~~~~~---------------~~~i~-~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      .|..++.......   ...+.+.               -.... .++..        +++ .++++-...+.|+.++. .
T Consensus       293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~  370 (430)
T 3tc9_A          293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-Q  370 (430)
T ss_dssp             EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-T
T ss_pred             EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-C
Confidence            5999876532110   1111110               01123 45553        334 35555556678888873 2


Q ss_pred             CCCCCCCCC----CCe------eeccCCCceeEEEEcCC-CCceEEEEcCCcEEEEE
Q 035558          207 MGQPVEGGL----DPI------LAYTAGAEIEQLQWSSS-QPDWVAIAFSTKLQILR  252 (253)
Q Consensus       207 ~~~~~~~~~----~~~------~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~vw~  252 (253)
                      +........    ..-      .....-.....|++.|+ +..+++-..++.|+.++
T Consensus       371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence            221100000    000      00001235789999994 65455555667777664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.53  E-value=8.4e-05  Score=54.85  Aligned_cols=190  Identities=8%  Similarity=0.070  Sum_probs=110.3

Q ss_pred             CCCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--
Q 035558            2 CQKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--   77 (253)
Q Consensus         2 p~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--   77 (253)
                      |+++.++++..+  .|...|.. +    +..+.+.-...    ...-.|++. .++.++++.-.++.+.++++.....  
T Consensus        36 ~~~~~L~aV~d~~~~I~~ld~~-g----~v~~~i~l~g~----~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           36 AQSNTLFSTINKPAAIVEMTTN-G----DLIRTIPLDFV----KDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             TTTTEEEEEEETTEEEEEEETT-C----CEEEEEECSSC----SSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             CCCCEEEEEECCCCeEEEEeCC-C----CEEEEEecCCC----CChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            555656665554  77778877 3    55555422110    346688887 6777666655677898888765432  


Q ss_pred             -eeeee------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCC---CCCeeeeec----cCCCCCCeeEEEeeCCCC
Q 035558           78 -DTQLI------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRD---KEHSTIIYE----SSEPDTPLVRLGWNKQDP  142 (253)
Q Consensus        78 -~~~~~------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~----~~~~~~~i~~~~~~~~~~  142 (253)
                       +....      ..+.....|+|. .++.|.++.+.....+|.++.   .........    .......+..++++|.++
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg  185 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN  185 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence             12221      123456899999 776666666665666666642   111122211    112233678999999666


Q ss_pred             CEEEEEEeCCCeEEEEECCCCCCCeeeecc-c------ccceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558          143 RYMATIIMDSAKVVVLDIRFPTLPVVELQR-H------QASVNAIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       143 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~------~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                      .+++.+.... .+..+|....-.....+.. .      -.....|+|.++| + |+..++-+.++.|.-
T Consensus       186 ~lliLS~~s~-~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          186 TLLVLSHESR-ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEEEEETTTT-EEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEEC
T ss_pred             eEEEEECCCC-eEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEEe
Confidence            6666555444 4999997743211222221 1      1256789999998 4 555577776666643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.52  E-value=0.0003  Score=59.11  Aligned_cols=223  Identities=10%  Similarity=-0.010  Sum_probs=131.5

Q ss_pred             CCceEEeecCcEEEEEccCCccccceeee--ecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSSDFLRVWRISDEDRRVELKSL--LNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~~~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ..-+|.+....|+..+++..    .....  +.+-      ..+..++|++.++..+++-..++.|+.+++........+
T Consensus         6 ~~~Ll~s~~~~I~~i~l~~~----~~~~~~~~~~~------~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~   75 (628)
T 4a0p_A            6 EAFLLFSRRADIRRISLETN----NNNVAIPLTGV------KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV   75 (628)
T ss_dssp             CCEEEEEETTEEEEEESSCT----TCEEECCCCSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CcEEEEEeCCcEEEEECCCC----CcceEEEcCCC------CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE
Confidence            44455543349999999864    22222  2222      357799999555666666667889999998754433333


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-CCeEEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-SAKVVVL  158 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~  158 (253)
                      .........|++.  .++++.+-...+.|.+.++......... .  ..-.....++++|..+ .|...... ...|...
T Consensus        76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-~--~~l~~P~~iavdp~~G-~lY~tD~g~~~~I~r~  151 (628)
T 4a0p_A           76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-W--KDLDSPRALALDPAEG-FMYWTEWGGKPKIDRA  151 (628)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-C--SSCCCEEEEEEETTTT-EEEEEECSSSCEEEEE
T ss_pred             eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-e--CCCCCcccEEEccCCC-eEEEeCCCCCCEEEEE
Confidence            3222346677877  4556666667788999999765432222 1  1223578999999444 45444422 2338888


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      ++....  ...+...-...+.+++++++.++.++-...+.|..+|+......        ..........++++.. +..
T Consensus       152 ~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~--------v~~~~l~~P~glav~~-~~l  220 (628)
T 4a0p_A          152 AMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE--------VIADDLPHPFGLTQYQ-DYI  220 (628)
T ss_dssp             ETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------EEEECCSCEEEEEEET-TEE
T ss_pred             eCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE--------EeeccCCCceEEEEEC-CEE
Confidence            876543  23333334567899999987555566667789999998764321        2223334455777654 322


Q ss_pred             eEEEEcCCcEEEE
Q 035558          239 WVAIAFSTKLQIL  251 (253)
Q Consensus       239 ~~~~~~~~~i~vw  251 (253)
                      +++-...+.|...
T Consensus       221 y~tD~~~~~I~~~  233 (628)
T 4a0p_A          221 YWTDWSRRSIERA  233 (628)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEecCCCCEEEEE
Confidence            3333334444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.51  E-value=1.2e-05  Score=68.18  Aligned_cols=158  Identities=8%  Similarity=0.001  Sum_probs=98.3

Q ss_pred             EEEecCCCCCEEEEEeCCC-------------------eEEEEeccCceeeeeeec--cc-------ccEEEEEec-CCC
Q 035558           47 SFDWNEAEPRRIGTSSIDT-------------------TCTIWDIEREAVDTQLIA--HD-------KEVYDIAWG-GVG   97 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~   97 (253)
                      .+++. +...+++.++.++                   .|..+|.++++.+..++.  |.       .++...... +++
T Consensus       234 ~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            46777 6667888887766                   399999999998877763  21       222222222 443


Q ss_pred             ---eEEEEeCCCcEEEEEcCCCCCeeeeeccC---------CCCC------------------------CeeEEEeeCCC
Q 035558           98 ---VFASVSADGSVRVFDLRDKEHSTIIYESS---------EPDT------------------------PLVRLGWNKQD  141 (253)
Q Consensus        98 ---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~------------------------~i~~~~~~~~~  141 (253)
                         .++.++.+|.++++|.++++.........         ....                        .-..++++| +
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~  391 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-G  391 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-C
Confidence               68899999999999999987542111100         0000                        011267787 4


Q ss_pred             CCEEEEEE------------------------------------eCCCeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558          142 PRYMATII------------------------------------MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH  185 (253)
Q Consensus       142 ~~~l~~~~------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  185 (253)
                      ..++++..                                    .++. |..||+.+++. +.+...+ .+.....+...
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~-l~A~D~~tG~~-~W~~~~~-~~~~~~~~~t~  468 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA-LLAWDPVKQKA-AWKVPYP-THWNGGTLSTA  468 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE-EEEEETTTTEE-EEEEEES-SSCCCCEEEET
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce-EEEEeCCCCcE-EEEccCC-CCCcCceeEeC
Confidence            44444321                                    1244 89999988763 4444322 23333344455


Q ss_pred             CCCeEEEecCCCcEEEEeccCCCCC
Q 035558          186 SSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       186 ~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      + .+++.++.|+.+++||.++++..
T Consensus       469 g-g~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          469 G-NLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             T-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             C-CEEEEECCcccchhhhhhcChhh
Confidence            6 48888999999999999988744

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.50  E-value=8.8e-05  Score=63.77  Aligned_cols=193  Identities=13%  Similarity=0.040  Sum_probs=109.5

Q ss_pred             CeeEEEecCCCCCEEEEEe-CCC----eEEEEeccCc-eeeee-eecccccEEEEEec-CCCeEEEEeCC-----CcEEE
Q 035558           44 PLTSFDWNEAEPRRIGTSS-IDT----TCTIWDIERE-AVDTQ-LIAHDKEVYDIAWG-GVGVFASVSAD-----GSVRV  110 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~-~dg----~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~~-~~~~l~~~~~d-----g~i~i  110 (253)
                      .+...+||||++++|+-+. .+|    .|+++|+.++ +.+.. +.   .....++|+ +++.|+....|     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            5678899856788776443 333    5999999988 63221 21   123468899 88877776665     25888


Q ss_pred             EEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--CeEEEEECCCCCCCe--eee-cccccceeEEEEec
Q 035558          111 FDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--AKVVVLDIRFPTLPV--VEL-QRHQASVNAIAWAP  184 (253)
Q Consensus       111 ~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~~~~--~~~-~~~~~~i~~~~~~~  184 (253)
                      +++.++... ..+..... ......+.|+| ++++|+.....+  ..|.++|+.+.....  ..+ ........++.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~~-~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHN-PLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCC-TTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecCC-CceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence            888776422 23333222 22566789999 888877665432  348888988753222  333 23344556666554


Q ss_pred             CCCCeEEEecCC--C--cEEEEeccCCCCCCCCCCCCee-eccCCC--ceeEEEEcCCCCceE-EEEcCCcEEEE
Q 035558          185 HSSCHICTAGDD--S--QALIWDLSSMGQPVEGGLDPIL-AYTAGA--EIEQLQWSSSQPDWV-AIAFSTKLQIL  251 (253)
Q Consensus       185 ~~~~~l~~~~~d--g--~i~iwd~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~-~~~~~~~i~vw  251 (253)
                      .+ .+++....+  +  .|..+++.+.....       . +..+..  .+..+.+.  +..++ +...++..+++
T Consensus       330 g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~-------~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          330 TS-HLVILTNEGGAVNHKLLIAPRGQPSDWS-------HVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             TT-EEEEEECTTTCTTCEEEEEETTSTTCCC-------CEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred             CC-EEEEEeCCCCCCCcEEEEEcCCCcccce-------eeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence            43 455555544  3  55555655321111       2 233332  45566665  33444 55556655544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.50  E-value=0.00043  Score=59.92  Aligned_cols=229  Identities=10%  Similarity=0.047  Sum_probs=133.4

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCC--CCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGN--KNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      +.+.++..+ .+.+|+..+.    +........  ........|.++... .++.+ ..|+.+| |.+||..+++.....
T Consensus       226 g~lwigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~l-Wigt~~G-l~~~~~~~~~~~~~~  298 (795)
T 4a2l_A          226 TRIWVATEGAGLFLINPKTK----EIKNYLHSPSNPKSISSNYIRSLAMD-SQNRL-WIGTFND-LNIYHEGTDSFASYS  298 (795)
T ss_dssp             TEEEEEEBSSCEEEEETTTT----EEEEECCCTTCTTSCSCSBEEEEEEC-TTSCE-EEEESSC-EEEEETTTTEEEEEC
T ss_pred             CCEEEEECCCCeEEEeCCCC----eEEEeecCCCCccccCCCeEEEEEEc-CCCCE-EEEeCCh-hheEcCCCCeEEEEe
Confidence            445555444 7888887663    222111111  000011568899887 56654 4555554 888998776533221


Q ss_pred             e-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec---cCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           82 I-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE---SSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        82 ~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      .       -....|.++... ++. +-.|+.++-|..++..+.........   .......|.++...+ +++ |.+|+.
T Consensus       299 ~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~  375 (795)
T 4a2l_A          299 SNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTN  375 (795)
T ss_dssp             CCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEES
T ss_pred             cCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEEC
Confidence            1       123578898888 555 45566667788888765542211111   011233688888876 555 445677


Q ss_pred             CCCeEEEEECCCCCCCeeeec---------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558          151 DSAKVVVLDIRFPTLPVVELQ---------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY  221 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  221 (253)
                      +++ |..||..+..  ...+.         .....|.++...+++ ++|..|+.++-|..||..++.........+   .
T Consensus       376 ~~G-l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~---~  448 (795)
T 4a2l_A          376 DGG-LNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNS---Q  448 (795)
T ss_dssp             SSC-EEEECTTTCC--EEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTS---C
T ss_pred             CCC-eEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCC---C
Confidence            777 9999987643  22221         123568899988887 447778887889999987754211000000   0


Q ss_pred             cCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          222 TAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       222 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      .....|.++...+++..+++ +. +.+.+|+
T Consensus       449 l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~  477 (795)
T 4a2l_A          449 LVNENVYAILPDGEGNLWLG-TL-SALVRFN  477 (795)
T ss_dssp             CSCSCEEEEEECSSSCEEEE-ES-SCEEEEE
T ss_pred             cCCCeeEEEEECCCCCEEEE-ec-CceeEEe
Confidence            23467899999888874444 44 4566654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.49  E-value=8.9e-05  Score=61.62  Aligned_cols=139  Identities=8%  Similarity=-0.038  Sum_probs=84.3

Q ss_pred             eEEEEeccCceeeeeeecc----------cccEEEEEec-CC---CeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC---
Q 035558           66 TCTIWDIEREAVDTQLIAH----------DKEVYDIAWG-GV---GVFASVSADGSVRVFDLRDKEHSTIIYESSEP---  128 (253)
Q Consensus        66 ~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~-~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---  128 (253)
                      .|..+|.++++.+..++..          ..++. +... ++   ..++.++.+|.+.++|..+++..-........   
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            5999999999987776521          12222 2222 45   35778889999999999988743322211100   


Q ss_pred             -------CCCe--------------------------eEEEeeCCCCCEEEEEEe-------------------------
Q 035558          129 -------DTPL--------------------------VRLGWNKQDPRYMATIIM-------------------------  150 (253)
Q Consensus       129 -------~~~i--------------------------~~~~~~~~~~~~l~~~~~-------------------------  150 (253)
                             ..++                          ..++++| +..++++...                         
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCccccccce
Confidence                   0011                          2467888 5555555432                         


Q ss_pred             ------------CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          151 ------------DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       151 ------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                                  ++. |..||+.+++. +.++.. ...+.+..+...+ .+++.++.||.|+.||.++++..
T Consensus       431 ~~~~~~~~~~~~~g~-l~a~D~~tG~~-~W~~~~-~~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQ-IRAFDLTTGKA-KWTKWE-KFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEECTTSTTSCCCEE-EEEECTTTCCE-EEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             eccCccccCCCCCCe-EEEEECCCCCE-EEEecC-CCCccceeEEECC-CEEEEEcCCCeEEEEECCCCCEE
Confidence                        244 88999988663 444432 2223333333344 37778999999999999998754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.47  E-value=2.9e-05  Score=65.75  Aligned_cols=150  Identities=9%  Similarity=0.003  Sum_probs=84.9

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeC------CCeEEEEeccCce
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSI------DTTCTIWDIEREA   76 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~   76 (253)
                      +.+++.+.+ .|..+|..++    +.+..++...... ...+.+ -..   .+..++.+..      +|.|+.+|.++++
T Consensus       118 ~~v~v~~~dg~l~alD~~tG----~~~W~~~~~~~~~-~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~  189 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTG----KAIWSQQTTDPAK-PYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGK  189 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTC----CEEEEEECSCTTS-SCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CEEEEEcCCCEEEEEECCCC----CEeeeeccCCCCC-cceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence            444444446 9999999887    5555544321000 011111 011   1334555543      5899999999999


Q ss_pred             eeeeeeccc---c----------------------------cEEEEEec-CCCeEEEEeCCC------------------
Q 035558           77 VDTQLIAHD---K----------------------------EVYDIAWG-GVGVFASVSADG------------------  106 (253)
Q Consensus        77 ~~~~~~~~~---~----------------------------~v~~~~~~-~~~~l~~~~~dg------------------  106 (253)
                      .+..+....   .                            ....+++. ..++++.+..++                  
T Consensus       190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~  269 (668)
T 1kv9_A          190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYL  269 (668)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            877664210   0                            01135666 567888887766                  


Q ss_pred             -cEEEEEcCCCCCeeeeeccCCCC-------CCeeEEEeeCCCCC---EEEEEEeCCCeEEEEECCCCCC
Q 035558          107 -SVRVFDLRDKEHSTIIYESSEPD-------TPLVRLGWNKQDPR---YMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus       107 -~i~i~d~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~---~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                       .|..+|.++++..-..... .+.       .+.....+.. +++   .+++++.+|. ++++|.++++.
T Consensus       270 ~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~~  336 (668)
T 1kv9_A          270 SSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGF-FYVLDRTNGKL  336 (668)
T ss_dssp             TEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTTCCE
T ss_pred             eeEEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCE-EEEEECCCCCE
Confidence             3999999998743322221 111       1222222222 443   5777777777 99999988763

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=0.00038  Score=56.33  Aligned_cols=237  Identities=9%  Similarity=-0.012  Sum_probs=128.6

Q ss_pred             CCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEe-------cCCCCCEEEEEeCCC-------eE
Q 035558            4 KPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDW-------NEAEPRRIGTSSIDT-------TC   67 (253)
Q Consensus         4 ~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~~~~~dg-------~i   67 (253)
                      .++++++...  .|++.|+..+    .......... ..+ .....++|       + ++++.|+.+...+       .|
T Consensus       151 ~~~Lyv~~~~~~~i~~ID~~~~----~v~~l~~~~~-~~~-~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~~~~~V  223 (496)
T 3kya_A          151 KDHLYICYDGHKAIQLIDLKNR----MLSSPLNINT-IPT-NRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGDESPSV  223 (496)
T ss_dssp             EEEEEEEEETEEEEEEEETTTT----EEEEEECCTT-SSC-SBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGGGEEEE
T ss_pred             CCEEEEEECCCCeEEEEECCCC----EEEEEEccCc-ccc-CCCcEEEEeecccccC-CCCCEEEEEeCCCCCcccCceE
Confidence            4555555554  7888888774    3332222211 011 45789999       8 7888666665543       26


Q ss_pred             EEEeccC-ceee-----eeeecccccEEEEEec--CCCeEEEEeCCCcEEEEEcC-------CCCC-----------eee
Q 035558           68 TIWDIER-EAVD-----TQLIAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLR-------DKEH-----------STI  121 (253)
Q Consensus        68 ~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~-------~~~~-----------~~~  121 (253)
                      .+.+... +...     ..+... .....++.+  ++.++++-..++.|..+|+.       ++..           ...
T Consensus       224 ~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~  302 (496)
T 3kya_A          224 YIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQ  302 (496)
T ss_dssp             EEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEE
T ss_pred             EEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccce
Confidence            6665443 2221     122211 233566777  45566666778889999997       4543           112


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe---eeeccc---c------------ccee-EEEE
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV---VELQRH---Q------------ASVN-AIAW  182 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~---~~~~~~---~------------~~i~-~~~~  182 (253)
                      +... ........++|+| +++.|+.+......|+.++.......+   ..+.+.   .            .... .++.
T Consensus       303 l~~~-~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v  380 (496)
T 3kya_A          303 LFTI-ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV  380 (496)
T ss_dssp             EEEC-SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred             eEec-CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence            2222 1223567899999 888777776666569887654322111   111111   0            1234 4555


Q ss_pred             e-------cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC--------------Ce--eeccCCCceeEEEEcCC-CCc
Q 035558          183 A-------PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD--------------PI--LAYTAGAEIEQLQWSSS-QPD  238 (253)
Q Consensus       183 ~-------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~--~~~~~~~~v~~~~~~~~-~~~  238 (253)
                      .       +++ .++++-....+|+.++. .+.........              .-  .....-.....|++.++ +..
T Consensus       381 d~~~~~~~~~g-~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~l  458 (496)
T 3kya_A          381 KNPDYTGEEEY-DFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMF  458 (496)
T ss_dssp             ECTTCCSSCCE-EEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEE
T ss_pred             ccccccccCCC-eEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEE
Confidence            4       455 46666667889999983 33211000000              00  00011245789999997 765


Q ss_pred             eEEEEcCCcEEEEE
Q 035558          239 WVAIAFSTKLQILR  252 (253)
Q Consensus       239 ~~~~~~~~~i~vw~  252 (253)
                      +++=..++.||.+.
T Consensus       459 yVaD~~N~rIrki~  472 (496)
T 3kya_A          459 YVHDQVGHTIRTIS  472 (496)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEeCCCCEEEEEE
Confidence            55666677788765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.43  E-value=0.00038  Score=58.00  Aligned_cols=166  Identities=12%  Similarity=0.062  Sum_probs=94.1

Q ss_pred             CeEEEEeccCceeeeeeec--cc--------ccEEEEEe--cCC---CeEEEEeCCCcEEEEEcCCCCCeeeeeccCC--
Q 035558           65 TTCTIWDIEREAVDTQLIA--HD--------KEVYDIAW--GGV---GVFASVSADGSVRVFDLRDKEHSTIIYESSE--  127 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~--~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--  127 (253)
                      +.|..+|.++++.+..++.  |.        .++. +..  .++   ..++.++.+|.++++|.++++..-.......  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5899999999998877653  21        2222 122  134   3788899999999999998874322211100  


Q ss_pred             -----------------------------CCC-----------CeeEEEeeCCCCCEEEEEEe-----------------
Q 035558          128 -----------------------------PDT-----------PLVRLGWNKQDPRYMATIIM-----------------  150 (253)
Q Consensus       128 -----------------------------~~~-----------~i~~~~~~~~~~~~l~~~~~-----------------  150 (253)
                                                   ...           .-..++++|..+ ++++...                 
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence                                         000           011356677333 4443321                 


Q ss_pred             ----------------CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558          151 ----------------DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       151 ----------------~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  214 (253)
                                      .+. |..||+.+++. +.+.... .++..-.....+ .+++.++.||.++.||.++++..-   
T Consensus       449 ~~~g~~~~~~p~~~~~~G~-l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~lW---  521 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGS-LRAMDPVSGKV-VWEHKEH-LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELW---  521 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEE-EEEECTTTCCE-EEEEEES-SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEE---
T ss_pred             ceeccceeecCCCCCCcce-EEEEECCCCCE-EEEecCC-CCCcccceEeCC-CEEEEECCCCcEEEEECCCCCEEE---
Confidence                            344 88899988764 4443322 222221222234 378889999999999999988543   


Q ss_pred             CCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          215 LDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                         ....+......-+.|..+|+.+++.
T Consensus       522 ---~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          522 ---KFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             ---EEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ---EecCCCCcccCceEEEECCEEEEEE
Confidence               1111111111225666788766643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.41  E-value=3.8e-05  Score=64.97  Aligned_cols=225  Identities=9%  Similarity=-0.021  Sum_probs=115.9

Q ss_pred             CCceEEeecC-------------cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEE
Q 035558            4 KPDLLATSSD-------------FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTI   69 (253)
Q Consensus         4 ~~~~l~~~~~-------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~v   69 (253)
                      ++.+++.|+.             .+.+||..++  .+..+..+.....    ....++++. .++.+++.|+. +..+.+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~--~w~~~~~~~~~~~----~~~~~~~~~-~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG--IVSDRTVTVTKHD----MFCPGISMD-GNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC--CBCCCEEEECSCC----CSSCEEEEC-TTSCEEEECSSSTTCEEE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCC--cEEeCcccCCCCC----CccccccCC-CCCCEEEeCCCCCCceEE
Confidence            6677777541             4778888774  2333333322110    223346666 78889998884 458999


Q ss_pred             EeccCceeee--eeecccccEEEEEec-CCCeEEEEe-CC-----CcEEEEEcCCCCCeeee----eccCCCCCCeeEEE
Q 035558           70 WDIEREAVDT--QLIAHDKEVYDIAWG-GVGVFASVS-AD-----GSVRVFDLRDKEHSTII----YESSEPDTPLVRLG  136 (253)
Q Consensus        70 wd~~~~~~~~--~~~~~~~~v~~~~~~-~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~~~~i~~~~  136 (253)
                      ||..+.+-..  .+...... .+++.. ++++++.|+ .+     ..+.+||..+.+-...-    ....... .  ...
T Consensus       270 yd~~t~~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~--~~~  345 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-K--QGL  345 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-T--TGG
T ss_pred             ecCcCCceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-c--cce
Confidence            9998775332  22211111 334455 788888888 34     56999999876521110    0011100 0  011


Q ss_pred             eeCCCCCEEEEEEeCCC--------eEEEEECCCCCCCeeeecccc---------cceeEEEEecCCCCeEEEecCCC--
Q 035558          137 WNKQDPRYMATIIMDSA--------KVVVLDIRFPTLPVVELQRHQ---------ASVNAIAWAPHSSCHICTAGDDS--  197 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~l~~~~~dg--  197 (253)
                      +.. ++..++.++.++.        .+..||..+... ......+.         ..-.++.|...+.++++.|+.++  
T Consensus       346 ~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~  423 (656)
T 1k3i_A          346 YRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ  423 (656)
T ss_dssp             GTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred             eec-CCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence            222 4555566654432        367888876542 22221111         12234455443336888887543  


Q ss_pred             ---------cEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcC
Q 035558          198 ---------QALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFS  245 (253)
Q Consensus       198 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  245 (253)
                               .|.+||..+........    ........-.+....|+++.++.+|.+
T Consensus       424 ~~~~~~~~~~v~~yd~~~~~W~~~~~----~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          424 DSDATTNAHIITLGEPGTSPNTVFAS----NGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             SSBCCCCEEEEECCSTTSCCEEEECT----TCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CCCcCCcceEEEcCCCCCCCeeEEcc----CCCCCCcccCCeEECCCCCEEEECCcc
Confidence                     57777776644211000    000111122344566888877777654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.40  E-value=1.5e-05  Score=67.51  Aligned_cols=226  Identities=6%  Similarity=-0.082  Sum_probs=116.6

Q ss_pred             CCCceEEeec-C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CC-----CeEEEEecc
Q 035558            3 QKPDLLATSS-D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-ID-----TTCTIWDIE   73 (253)
Q Consensus         3 ~~~~~l~~~~-~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~vwd~~   73 (253)
                      .++.+++.|+ +  .+.+||..+.  .+.....+....     . -.+++.. +++++++.|+ .+     ..+.+||..
T Consensus       252 ~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R-----~-~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          252 GNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVAR-----G-YQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCC-----S-SCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccc-----c-ccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence            3577888877 3  8999999874  222222222111     1 1234444 5788888888 34     468999998


Q ss_pred             Cceeeeee----ecccccEEEEEec-CCCeEEEEeCCC---------cEEEEEcCCCCCeeeeeccCC------CCCCee
Q 035558           74 REAVDTQL----IAHDKEVYDIAWG-GVGVFASVSADG---------SVRVFDLRDKEHSTIIYESSE------PDTPLV  133 (253)
Q Consensus        74 ~~~~~~~~----~~~~~~v~~~~~~-~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~------~~~~i~  133 (253)
                      +.+-...-    ......-....+. ++..++.++.+|         .+..||..+............      ....-.
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            76532210    0000000001122 455555555444         467888887653322221111      111234


Q ss_pred             EEEeeCCCCCEEEEEEeCC-------C---eEEEEECCCCCCCeeee--ccccc-ceeEEEEecCCCCeEEEecCC----
Q 035558          134 RLGWNKQDPRYMATIIMDS-------A---KVVVLDIRFPTLPVVEL--QRHQA-SVNAIAWAPHSSCHICTAGDD----  196 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~-------~---~i~~~d~~~~~~~~~~~--~~~~~-~i~~~~~~~~~~~~l~~~~~d----  196 (253)
                      ++.|...++++++.|+.++       .   .+.+||..+..- ....  ..... .-.++...|++ ++++.|+.+    
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~  480 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-TVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIP  480 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-EEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCT
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-eEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcC
Confidence            4555444677888887532       1   377888765431 1111  11111 22345667888 688888854    


Q ss_pred             -------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc
Q 035558          197 -------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF  244 (253)
Q Consensus       197 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  244 (253)
                             ..+.+||..+..-... ...+.....|    ....+.|+++.++.++.
T Consensus       481 ~~~~~~~~~v~~ydp~t~~W~~~-~~~~~~R~~h----s~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          481 FEDSTPVFTPEIYVPEQDTFYKQ-NPNSIVRVYH----SISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TCCCSBCCCCEEEEGGGTEEEEC-CCCSSCCCTT----EEEEECTTSCEEEEECC
T ss_pred             cCCCCcccceEEEcCCCCceeec-CCCCCccccc----cHhhcCCCcEEEecCCC
Confidence                   5689999877542110 0001111122    23446689886666664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.40  E-value=0.00046  Score=57.90  Aligned_cols=188  Identities=8%  Similarity=0.013  Sum_probs=107.4

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee-eeecc
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT-QLIAH   84 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~   84 (253)
                      +|.-+.. .|+..+++...  .+.......-      .....++|++.++..+++=...+.|+.++++...... .+...
T Consensus        11 ~~~~~~~~~I~~i~~~~~~--~~~~~~~~~~------~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~   82 (619)
T 3s94_A           11 LLLYANRRDLRLVDATNGK--ENATIVVGGL------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG   82 (619)
T ss_dssp             CEEEECSSBEEEECCC-----------CBCC------SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS
T ss_pred             eEEEeccccEEEEeCCCCc--ceEEEEEcCC------CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC
Confidence            3444444 89998887630  0111122222      3567999994455555555556789999887553222 22222


Q ss_pred             cccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECC
Q 035558           85 DKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIR  161 (253)
Q Consensus        85 ~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~  161 (253)
                      -.....|++.  .++++.+-...+.|.+.++..........   ..-.....++++|..+ .|..+... ...|...++.
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~Iavdp~~g-~ly~tD~g~~~~I~r~~~d  158 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMD  158 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCCEEEETTTT-EEEEEECSSSCEEEEEETT
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe---CCCCCCceEEEecCCC-eEEEeccCCCCEEEEEECC
Confidence            2567888988  45555666678899999998765332221   1122567899999444 44444432 2237777765


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      .... .......-...+.+++++++.++.++-...+.|..+|+...
T Consensus       159 G~~~-~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          159 GSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             SCSC-EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CCce-EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            4332 22222233467899999976555566667788999988654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.38  E-value=0.00018  Score=59.93  Aligned_cols=181  Identities=10%  Similarity=-0.024  Sum_probs=101.4

Q ss_pred             EEecCCCCCEEEEEeCC----------------CeEEEEeccCceeeeeeeccc----------ccEEEEEe--cCC---
Q 035558           48 FDWNEAEPRRIGTSSID----------------TTCTIWDIEREAVDTQLIAHD----------KEVYDIAW--GGV---   96 (253)
Q Consensus        48 ~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~--~~~---   96 (253)
                      .++. +...+++.++.+                +.|..+|.++++.+..++...          .++. +..  .++   
T Consensus       246 ~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          246 YAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             eeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            3455 456677777655                379999999999887766321          1222 222  135   


Q ss_pred             CeEEEEeCCCcEEEEEcCCCCCeeeeeccC----------CCCCC--------------------------eeEEEeeCC
Q 035558           97 GVFASVSADGSVRVFDLRDKEHSTIIYESS----------EPDTP--------------------------LVRLGWNKQ  140 (253)
Q Consensus        97 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~--------------------------i~~~~~~~~  140 (253)
                      ..++.++.+|.+.++|.++++..-......          ....+                          -..++++| 
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-  402 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-  402 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-
Confidence            467778999999999999987443222110          00001                          12456777 


Q ss_pred             CCCEEEEEE---------------------------------------eCCCeEEEEECCCCCCCeeeecccccceeEEE
Q 035558          141 DPRYMATII---------------------------------------MDSAKVVVLDIRFPTLPVVELQRHQASVNAIA  181 (253)
Q Consensus       141 ~~~~l~~~~---------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~  181 (253)
                      +..++++..                                       ..+. +..||+.+++. +.+... ..+..+-.
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~-l~A~D~~tG~~-~W~~~~-~~~~~~g~  479 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ-IKAYNAITGDY-KWEKME-RFAVWGGT  479 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE-EEEECTTTCCE-EEEEEE-SSCCCSBC
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe-EEEEECCCCCE-EeEecC-CCCccCcc
Confidence            444444321                                       1234 88888887653 333321 11222111


Q ss_pred             EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          182 WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      ....+ .+++.++.||.++.||.++++..-      ....+......-+.+..+|+.+++
T Consensus       480 ~~tag-g~vf~gt~dg~l~A~D~~tG~~lW------~~~l~~g~~~~P~~y~~~G~qyv~  532 (599)
T 1w6s_A          480 MATAG-DLVFYGTLDGYLKARDSDTGDLLW------KFKIPSGAIGYPMTYTHKGTQYVA  532 (599)
T ss_dssp             EEETT-TEEEEECTTSEEEEEETTTCCEEE------EEECSSCCCSCCEEEEETTEEEEE
T ss_pred             eEecC-CEEEEECCCCeEEEEECCCCCEEE------EeeCCCCcEeccEEEEeCCEEEEE
Confidence            22334 378889999999999999988543      111121111223455667775554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.00075  Score=58.29  Aligned_cols=195  Identities=9%  Similarity=-0.025  Sum_probs=112.8

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee---------ecccccEEEEEec-CCCeEEEEeCCCcEEEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL---------IAHDKEVYDIAWG-GVGVFASVSADGSVRVFD  112 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d  112 (253)
                      ..|.++... .++. |..|+.++-|..++..........         ......|.++... ++. |..|+.++-|..+|
T Consensus       313 ~~v~~i~~D-~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          313 ASARYIFQD-SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE  389 (781)
T ss_dssp             SCEEEEEEC-SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred             CeEEEEEEe-CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence            578898887 5565 566776667888888755422110         0123568888887 555 45566556688888


Q ss_pred             cCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---ccccceeEEEEecCCCCe
Q 035558          113 LRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ---RHQASVNAIAWAPHSSCH  189 (253)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~  189 (253)
                      ..+................|.++...+ ++.+. +|+.+++ +..+|.++..  ...+.   .....|.++...+++  .
T Consensus       390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~G-l~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g--~  462 (781)
T 3v9f_A          390 NGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGN-ISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNK--K  462 (781)
T ss_dssp             TTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEE-EEEECSSSCE--EEECCSTTTCCCCEEEEEECTTS--E
T ss_pred             CCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCC-EEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCC--C
Confidence            765431111111112234788888776 55544 4666566 9999987543  23332   134578899888887  4


Q ss_pred             EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      |..|+. +-|..||..+..........  ........|.++...+++..++ ++.++.+..+
T Consensus       463 lwigt~-~Gl~~~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~  520 (781)
T 3v9f_A          463 IWIGTH-AGVFVIDLASKKVIHHYDTS--NSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIY  520 (781)
T ss_dssp             EEEEET-TEEEEEESSSSSCCEEECTT--TSSCSCSCEEEEEECTTCCEEE-EESSSCEEEE
T ss_pred             EEEEEC-CceEEEeCCCCeEEecccCc--ccccccceeEEEEEcCCCCEEE-EEcCCCEEEE
Confidence            555555 56888988765422100000  0001146789999999887444 4443445444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=0.00019  Score=57.54  Aligned_cols=156  Identities=11%  Similarity=0.077  Sum_probs=92.1

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC-CC----cEEEEEcCCCC
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA-DG----SVRVFDLRDKE  117 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg----~i~i~d~~~~~  117 (253)
                      ....++++|.+...|+.+...+.|+.+|++.++..... ........++++ +++.|+.+.. ++    .+..++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            45688898313455666655588999999876544333 344568899999 8885555543 22    23334433222


Q ss_pred             C-eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecC
Q 035558          118 H-STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       118 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      . ...+..    ......++++|.++. |+++......|..++...... .+.... .......++|+|++..++++-..
T Consensus       217 ~~~~~l~~----~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          217 KVITELTK----GQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             CSEEEEEE----CSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETT
T ss_pred             eeeeeecc----CCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECC
Confidence            1 112221    124567889984455 444444443499999875432 111111 12346789999999425556667


Q ss_pred             CCcEEEEeccC
Q 035558          196 DSQALIWDLSS  206 (253)
Q Consensus       196 dg~i~iwd~~~  206 (253)
                      .+.|..++...
T Consensus       291 ~~~I~~~~~d~  301 (430)
T 3tc9_A          291 QHYILRSDYDW  301 (430)
T ss_dssp             TTEEEEEEEET
T ss_pred             CCEEEEEeCCc
Confidence            88999988764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.32  E-value=0.00027  Score=58.75  Aligned_cols=151  Identities=9%  Similarity=0.013  Sum_probs=79.9

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEeC------CCeEEEEeccCc
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSSI------DTTCTIWDIERE   75 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~   75 (253)
                      ++.+++...+ .|..+|..++    +.+...+..... ....+.+ -..   .+..++.++.      ++.|+.+|.+++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG----~~~W~~~~~~~~-~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTG----KINWEVEVCDPK-VGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTC----CEEEEEECCCGG-GTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCC----CEEEEecCCCCC-ccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCC
Confidence            3444444456 8999999887    544443321100 0001111 011   1345555554      789999999999


Q ss_pred             eeeeeeeccccc-------------------------------------E-EEEEec-CCCeEEEEeCC-----------
Q 035558           76 AVDTQLIAHDKE-------------------------------------V-YDIAWG-GVGVFASVSAD-----------  105 (253)
Q Consensus        76 ~~~~~~~~~~~~-------------------------------------v-~~~~~~-~~~~l~~~~~d-----------  105 (253)
                      +.+..+......                                     + ..+++. ....++.+..+           
T Consensus       187 ~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~g  266 (571)
T 2ad6_A          187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred             cEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCC
Confidence            987765422110                                     0 123444 44555555432           


Q ss_pred             -----CcEEEEEcCCCCCeeeeeccC-------CCCCCeeEEEeeCCCCC---EEEEEEeCCCeEEEEECCCCCC
Q 035558          106 -----GSVRVFDLRDKEHSTIIYESS-------EPDTPLVRLGWNKQDPR---YMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus       106 -----g~i~i~d~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~---~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                           +.|..+|.++++..-......       ....++. +...+ +++   .++.++.++. ++++|..+++.
T Consensus       267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~~  338 (571)
T 2ad6_A          267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGI-LYTLNRENGNL  338 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSE-EEEEETTTCCE
T ss_pred             CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcE-EEEEECCCCCE
Confidence                 359999999987432222111       1111221 22223 453   5666777776 99999988653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.32  E-value=0.0012  Score=56.89  Aligned_cols=159  Identities=9%  Similarity=-0.079  Sum_probs=97.6

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe-C-CCcEEEEEcCCCCCe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS-A-DGSVRVFDLRDKEHS  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~-dg~i~i~d~~~~~~~  119 (253)
                      .....|++.+..++++++-...+.|.+.++........+...-.....|++. ....|+.+. . .+.|...++......
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            3456788874445666666778899999997554333333334567899998 544444443 3 377888888765532


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCC
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDS  197 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg  197 (253)
                      ..+.   ..-.....|++++ ....|+.+......|..+++..... ...+..  .-....+|++..+  +++++-...+
T Consensus       551 ~lv~---~~l~~P~GLavD~-~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~--~lYwtD~~~~  623 (791)
T 3m0c_C          551 SLVT---ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINE  623 (791)
T ss_dssp             EEEC---SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETT--EEEEEETTTT
T ss_pred             EEEe---CCCCCceEEEEec-CCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCC--EEEEEECCCC
Confidence            2222   1223678899998 5556666665555599999865432 222221  1223456666433  4666766778


Q ss_pred             cEEEEeccCCC
Q 035558          198 QALIWDLSSMG  208 (253)
Q Consensus       198 ~i~iwd~~~~~  208 (253)
                      .|...+..+++
T Consensus       624 ~I~~~dk~tG~  634 (791)
T 3m0c_C          624 AIFSANRLTGS  634 (791)
T ss_dssp             EEEEEETTTCC
T ss_pred             EEEEEeCCCCc
Confidence            88888876654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.32  E-value=0.00052  Score=52.53  Aligned_cols=193  Identities=6%  Similarity=-0.077  Sum_probs=110.0

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .++.++.+-..  .|..++++...........+....     .....+++.+.+++++++-...+.|.+.++........
T Consensus        40 ~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~-----~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~  114 (316)
T 1ijq_A           40 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL  114 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEEC--------CEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE
T ss_pred             CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC-----CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE
Confidence            34455555443  777777664100001111222111     24568888744556666666778999999875433322


Q ss_pred             eecccccEEEEEec-CCCeEEEEeC-C-CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSA-D-GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      +...-.....+++. .+..++.+.. . +.|...++..... ..+...  .-.....++++| ++..|+.+......|..
T Consensus       115 ~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~--~~~~P~gla~d~-~~~~lY~~D~~~~~I~~  190 (316)
T 1ijq_A          115 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISS  190 (316)
T ss_dssp             EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEE
T ss_pred             EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEEC--CCCCceEEEEec-cCCEEEEEECCCCeEEE
Confidence            33233567889998 5554444443 3 6888888865432 222211  123678899999 66666666655555999


Q ss_pred             EECCCCCCCeeeec---ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          158 LDIRFPTLPVVELQ---RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       158 ~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      +|+....  ...+.   .......++++.. + .++++-...+.|..++..+++
T Consensus       191 ~d~dg~~--~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          191 IDVNGGN--RKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EETTSCS--CEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             EecCCCc--eEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCc
Confidence            9987533  22221   1223456788853 4 577777778899999876554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.31  E-value=0.00034  Score=60.16  Aligned_cols=185  Identities=15%  Similarity=0.146  Sum_probs=101.2

Q ss_pred             CCCCceEEeec-----C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----CeEEE
Q 035558            2 CQKPDLLATSS-----D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----TTCTI   69 (253)
Q Consensus         2 p~~~~~l~~~~-----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~v   69 (253)
                      |++|++||-+.     +  .|+++|+.++ .. .....+.        .....++|+ ++++.|+....+     ..|++
T Consensus       183 ~PDG~~lAy~~~~~G~~~~~l~v~dl~~g-~~-~l~~~~~--------~~~~~~~Ws-pDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          183 PPEHDLVAFSVDMSGNEVYTIEFKRISDP-SQ-TIADKVS--------GTNGEIVWG-PDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             TTTTCEEEEEEESSSSSCEEEEEEETTCT-TC-CCCCCEE--------EECSCCEEC-SSTTEEEEEEECTTCCEEEEEE
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEEECCCC-CE-eCCcccc--------CceeeEEEe-cCCCEEEEEEECCCCCCCEEEE
Confidence            46777776432     2  5999999874 01 0011111        123478899 788777666654     26888


Q ss_pred             EeccCcee--eeeee-cccccEEEEEec-CCCeEEEEeC---CCcEEEEEcCCCC-Ce--eeeeccCCCCCCeeEEEeeC
Q 035558           70 WDIEREAV--DTQLI-AHDKEVYDIAWG-GVGVFASVSA---DGSVRVFDLRDKE-HS--TIIYESSEPDTPLVRLGWNK  139 (253)
Q Consensus        70 wd~~~~~~--~~~~~-~~~~~v~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~i~~~~~~~  139 (253)
                      +++.++..  ...+. ........+.|+ ++++|+..+.   ...|.++|+.++. ..  ..+.  ........++.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR--PREKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS--CCCTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee--cCCCCceEEEeeee
Confidence            88876542  22222 222345678899 9988776653   3458888988763 12  2222  22233556666653


Q ss_pred             CCCCEEEEEEeCC----CeEEEEECCCCCCCeee-eccccc--ceeEEEEecCCCCeEEEecCCCcEEEEec
Q 035558          140 QDPRYMATIIMDS----AKVVVLDIRFPTLPVVE-LQRHQA--SVNAIAWAPHSSCHICTAGDDSQALIWDL  204 (253)
Q Consensus       140 ~~~~~l~~~~~~~----~~i~~~d~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~iwd~  204 (253)
                        +..|+..+..+    ..|..+|+.+... ... +..+..  .+..+.+.  +..++++...++..++|-+
T Consensus       330 --g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          330 --TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             --TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred             --CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence              44444443332    2377778764221 222 333333  34445544  4456677778886655543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.29  E-value=0.0004  Score=55.64  Aligned_cols=199  Identities=10%  Similarity=0.012  Sum_probs=108.6

Q ss_pred             CeeEEEecCC-CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC---C-cEEEEEcCCCC
Q 035558           44 PLTSFDWNEA-EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD---G-SVRVFDLRDKE  117 (253)
Q Consensus        44 ~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d---g-~i~i~d~~~~~  117 (253)
                      ....++|+|. +...|+.+...+.|+.+|..+++..... ........++++ +++++++....   . .+...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999832 2445555554488999999877654433 344568899999 88854444321   1 13333332221


Q ss_pred             Ce-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEec
Q 035558          118 HS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       118 ~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      .. ..+..    ......++++|.++. |.++......|+.+|..+... ...+..  ....-..++|+|++..++++-.
T Consensus       219 ~~~~~~~~----~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~-~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          219 TERLSLCN----ARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTL-TEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             CCEEEEEE----CSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCE-EEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             eccccccc----cCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeE-EEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            10 11111    124566888884444 444444443499999875432 122211  1122346999999943555666


Q ss_pred             CCCcEEEEeccCCCCCCCCCCCCeeecc---------------CCCceeEEEE---------cCCCCceEEEEcCCcEEE
Q 035558          195 DDSQALIWDLSSMGQPVEGGLDPILAYT---------------AGAEIEQLQW---------SSSQPDWVAIAFSTKLQI  250 (253)
Q Consensus       195 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~---------~~~~~~~~~~~~~~~i~v  250 (253)
                      ..+.|+.++........   ..+....+               .-.....+++         .+++..+++-...+.|+.
T Consensus       293 ~~~~I~~~~~d~~~~~~---~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~  369 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKL---AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV  369 (433)
T ss_dssp             TTTEEEEEEBCTTTCCB---CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCCCCCccc---CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence            77899998875322111   00001111               1234677888         677765556556667776


Q ss_pred             EE
Q 035558          251 LR  252 (253)
Q Consensus       251 w~  252 (253)
                      ++
T Consensus       370 ~~  371 (433)
T 4hw6_A          370 LT  371 (433)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.21  E-value=0.00092  Score=51.21  Aligned_cols=158  Identities=7%  Similarity=-0.094  Sum_probs=99.3

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe--CCCcEEEEEcCCCCCee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS--ADGSVRVFDLRDKEHST  120 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~  120 (253)
                      ....+++.+..+.++++-...+.|.++++........+...-.....+++. .+..++.+.  ..+.|...++.......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            345788874456666666677899999987543222222334567888988 555555444  35788888887544222


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      ....   .-.....++++| ++..|+.+......|..+|+..... ............++++..+  .++++-...+.|.
T Consensus       160 ~~~~---~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~  232 (318)
T 3sov_A          160 IINS---EIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED--ILYWTDWSTHSIL  232 (318)
T ss_dssp             EECS---SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEETT--EEEEEETTTTEEE
T ss_pred             EEEC---CCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeCC--EEEEEecCCCeEE
Confidence            2211   122568899999 6666666666555699999875332 2222223445677887643  4677777788999


Q ss_pred             EEeccCCC
Q 035558          201 IWDLSSMG  208 (253)
Q Consensus       201 iwd~~~~~  208 (253)
                      .++..+++
T Consensus       233 ~~~~~~G~  240 (318)
T 3sov_A          233 ACNKYTGE  240 (318)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCC
Confidence            99986655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.21  E-value=0.00019  Score=54.70  Aligned_cols=157  Identities=11%  Similarity=0.163  Sum_probs=101.4

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee-eec----c--cccEEEEEe---c-CCCeEEEEe----------
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ-LIA----H--DKEVYDIAW---G-GVGVFASVS----------  103 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~----~--~~~v~~~~~---~-~~~~l~~~~----------  103 (253)
                      --+++|++..+.++++.-..++|..|+...+..... +..    .  ...+..|.|   . +++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            347889844555555555789999999975543322 221    1  124578999   5 656666543          


Q ss_pred             ---CCCcEEEEEcC---CCCCeeeeeccC---C-------CCCCeeEEEeeCCCCCEEEEEEeC-CCeEEEEECCCCCCC
Q 035558          104 ---ADGSVRVFDLR---DKEHSTIIYESS---E-------PDTPLVRLGWNKQDPRYMATIIMD-SAKVVVLDIRFPTLP  166 (253)
Q Consensus       104 ---~dg~i~i~d~~---~~~~~~~~~~~~---~-------~~~~i~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~  166 (253)
                         .+..|..+|+.   +++.........   .       .......++..+ +++..++++.. +. |..++.....  
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~-I~rV~pdG~~--  170 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPA-IARVSADGKT--  170 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCE-EEEECTTSCC--
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCe-EEEEeCCCCE--
Confidence               26779999999   665433322100   0       112578899999 89988888887 66 7777765432  


Q ss_pred             eeeec------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          167 VVELQ------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       167 ~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      +..+.      ......+.|+++|++ ++|++....|.+..+|+..
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence            22221      112346799999999 5666665599999999884

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.20  E-value=0.0012  Score=52.21  Aligned_cols=160  Identities=9%  Similarity=-0.076  Sum_probs=100.9

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe-C-CCcEEEEEcCCCCCe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS-A-DGSVRVFDLRDKEHS  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~-dg~i~i~d~~~~~~~  119 (253)
                      .....+++.+..++++++-...+.|.+.+++.......+...-.....|++. .+..|+... . .+.|...++......
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            3566888874466666676677899999987554433333333457889998 455444443 2 478888888765433


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCC
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDS  197 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg  197 (253)
                      ..+.   ..-.....|+++| ++..|+.+......|..+|+..... ......  .-....++++..+  .++++-...+
T Consensus       239 ~~~~---~~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~~--~lywtd~~~~  311 (400)
T 3p5b_L          239 SLVT---ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINE  311 (400)
T ss_dssp             EEEC---SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEETT--EEEEEESSSC
T ss_pred             EEEE---CCCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeCC--EEEEecCCCC
Confidence            2222   1123678899999 6666666666555599999875432 222221  2234567777432  4777777888


Q ss_pred             cEEEEeccCCCC
Q 035558          198 QALIWDLSSMGQ  209 (253)
Q Consensus       198 ~i~iwd~~~~~~  209 (253)
                      .|..+|..+++.
T Consensus       312 ~V~~~~~~~G~~  323 (400)
T 3p5b_L          312 AIFSANRLTGSD  323 (400)
T ss_dssp             SEEEEESSSCCC
T ss_pred             eEEEEEcCCCCc
Confidence            999998766653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.19  E-value=3.3e-05  Score=65.71  Aligned_cols=157  Identities=9%  Similarity=-0.072  Sum_probs=91.1

Q ss_pred             eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe-C-CCcEEEEEcCCCCCeee
Q 035558           45 LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS-A-DGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        45 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~-dg~i~i~d~~~~~~~~~  121 (253)
                      ...|++.+..++++++-...+.|.+.++........+.........|++. .+..|+.+. . .+.|..+++.......+
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            45677774456666665667889999987554333232222445778887 444444333 2 26788888765432222


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcE
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQA  199 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i  199 (253)
                      +..   .-.....|+|+| ++..|+.+......|..+|+..... ...+.  .......+|++..+  .++++....+.|
T Consensus       535 ~~~---~l~~PnGlavd~-~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V  607 (699)
T 1n7d_A          535 VTE---NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAI  607 (699)
T ss_dssp             SCS---SCSSCCCEEECT-TTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCE
T ss_pred             EeC---CCCCccEEEEec-cCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeE
Confidence            111   122566799999 5555555555444599999875332 22221  11223455666554  467777778899


Q ss_pred             EEEeccCCC
Q 035558          200 LIWDLSSMG  208 (253)
Q Consensus       200 ~iwd~~~~~  208 (253)
                      ..++..+++
T Consensus       608 ~~~d~~~G~  616 (699)
T 1n7d_A          608 FSANRLTGS  616 (699)
T ss_dssp             EEEETTTEE
T ss_pred             EEEEccCCC
Confidence            999876543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.15  E-value=0.0011  Score=55.33  Aligned_cols=146  Identities=14%  Similarity=0.022  Sum_probs=79.9

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeE-EEecCCCCCEEEEEe------CCCeEEEEeccCceee
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTS-FDWNEAEPRRIGTSS------IDTTCTIWDIEREAVD   78 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~   78 (253)
                      +++...+ .|..+|..++    +.+...+...... ...+.+ -...  ++ .++.++      .+|.|+.+|.++++.+
T Consensus       124 V~v~t~dg~l~AlDa~TG----~~~W~~~~~~~~~-~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~  195 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETG----ETVWKVENSDIKV-GSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQV  195 (599)
T ss_dssp             EEEECTTSEEEEEETTTC----CEEEEEECCCGGG-TCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred             EEEEcCCCEEEEEECCCC----CEEEeecCCCCCc-cceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEE
Confidence            5555456 8999999887    5444433211000 001111 1111  33 455554      3799999999999987


Q ss_pred             eeeeccccc-------------------------------------E-EEEEec-CCCeEEEEeCC--------------
Q 035558           79 TQLIAHDKE-------------------------------------V-YDIAWG-GVGVFASVSAD--------------  105 (253)
Q Consensus        79 ~~~~~~~~~-------------------------------------v-~~~~~~-~~~~l~~~~~d--------------  105 (253)
                      ..+......                                     + ..+++. ...+++.+..+              
T Consensus       196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~  275 (599)
T 1w6s_A          196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK  275 (599)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc
Confidence            665522110                                     0 023444 45566666654              


Q ss_pred             --CcEEEEEcCCCCCeeeeeccCCCC--------CCeeEEEee-CCCC---CEEEEEEeCCCeEEEEECCCCC
Q 035558          106 --GSVRVFDLRDKEHSTIIYESSEPD--------TPLVRLGWN-KQDP---RYMATIIMDSAKVVVLDIRFPT  164 (253)
Q Consensus       106 --g~i~i~d~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~~l~~~~~~~~~i~~~d~~~~~  164 (253)
                        +.|..+|.++++..-.. ....+.        .++. +... . ++   ..++.++.++. ++++|.++++
T Consensus       276 y~~sv~Ald~~TG~~~W~~-q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~  344 (599)
T 1w6s_A          276 WTMTIFGRDADTGEAKFGY-QKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGI-VYTLDRTDGA  344 (599)
T ss_dssp             TSSEEEEEETTTCCEEEEE-ESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSE-EEEEETTTCC
T ss_pred             ccceEEEEeCCCCceeeEe-ecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcE-EEEEECCCCC
Confidence              37999999998743222 222221        1121 2222 2 45   45666777777 9999998866

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.01  E-value=0.0048  Score=51.78  Aligned_cols=191  Identities=12%  Similarity=-0.002  Sum_probs=111.0

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD   85 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~   85 (253)
                      +|+.+.. .|+..+++.. ........+.+-      ..+.+++|.+.++.++++-...+.|+.+++........+...-
T Consensus       319 ~Ll~~~~~~i~~i~l~~~-~~~~~~~~~~~l------~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~  391 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTP-DFTDIVLQLEDI------RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI  391 (619)
T ss_dssp             EEEEEESSCEEEEESSST-TCCCEECCCSCC------SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred             EEEEEcccceEEEecCCC-ccceeEEecccc------CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC
Confidence            3444444 7777777653 111111111111      3567899994455556665567889999987543333233222


Q ss_pred             ccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558           86 KEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP  163 (253)
Q Consensus        86 ~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  163 (253)
                      ..+..+++.  .++++.+-+..+.|.+.++..... ..+..  ..-.....++++|..+.++.+-......|...++...
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~  468 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR-KILIS--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS  468 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-EEEEE--CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence            456678887  555666666788999999886643 22222  1223678999999445444443222223777676543


Q ss_pred             CCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          164 TLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .. .......-...+.+++++++.++.++-+..+.|..+++....
T Consensus       469 ~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~  512 (619)
T 3s94_A          469 DR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG  512 (619)
T ss_dssp             SC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             cc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence            32 222222345678999998764444555566889889886543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.0074  Score=52.13  Aligned_cols=233  Identities=8%  Similarity=0.014  Sum_probs=126.9

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCC-ccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKN-SEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++.+.++..+ .|..|+..+.    + ...+..... ......|.++... .++. |..|+.++-|..||..+++...-.
T Consensus       127 ~g~lwi~t~~~gl~~~~~~~~----~-~~~~~~~~~~~l~~~~i~~i~~d-~~g~-lwigt~~~Gl~~~~~~~~~~~~~~  199 (781)
T 3v9f_A          127 GKGLWVCTYYRGIEYLDIATG----K-FTHYNKSTVPALPSEQTWTATEA-EDGK-LYIGHVEGGLSILSLNDKSVKHFV  199 (781)
T ss_dssp             TSEEEEEESSSCEEEEETTTT----E-EEEESTTTCTTCSCCCEEEEEEE-ETTE-EEEEETTTEEEEEETTTTEEEEEC
T ss_pred             CCCEEEEECCCCeeEEECCCC----e-EEeeccCcccCCCccceEEEEEC-CCCC-EEEEecCCCeEEEcCCCCceEeee
Confidence            3445554424 7888887663    2 222211000 0001457788776 4554 555666656888998776533211


Q ss_pred             e-------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc----CCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           82 I-------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES----SEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        82 ~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      .       -....|.++... ++.+.+. +.+ -+.+||..+.+........    ......|.++...+ ++. +..|+
T Consensus       200 ~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt  275 (781)
T 3v9f_A          200 HDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIAT  275 (781)
T ss_dssp             C--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT-TSE-EEEEE
T ss_pred             cCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCC-EEEEe
Confidence            0       013468888877 6655554 445 5888998765422111110    11234788888876 554 55566


Q ss_pred             eCCCeEEEEECCCCCCCeeee-------------cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558          150 MDSAKVVVLDIRFPTLPVVEL-------------QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD  216 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  216 (253)
                      ..++ |.++|..+........             ......|.++...++|  .|..|+.++-|..++.......... ..
T Consensus       276 ~~~G-l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~-~~  351 (781)
T 3v9f_A          276 ELNG-IMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWS-YS  351 (781)
T ss_dssp             SSSC-EEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC---
T ss_pred             CCCC-eEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeec-cC
Confidence            6567 9999987644211110             1124578999988887  4777777788999987654321100 00


Q ss_pred             Ce---eeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          217 PI---LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       217 ~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +.   ...-....|.++...+++. +-.++.++.+..++
T Consensus       352 ~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          352 PTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE  389 (781)
T ss_dssp             --CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred             ccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence            00   0011245689999988886 44555555666654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.94  E-value=0.0008  Score=51.30  Aligned_cols=163  Identities=9%  Similarity=0.065  Sum_probs=96.7

Q ss_pred             cccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeecc----CCCCCCeeEEEe---eCCCCCEEEEEEe-----
Q 035558           85 DKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYES----SEPDTPLVRLGW---NKQDPRYMATIIM-----  150 (253)
Q Consensus        85 ~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~i~~~~~---~~~~~~~l~~~~~-----  150 (253)
                      ..-..+.+|+ ... ++++.-..++|..||...+.........    ......+..+.|   .| ++.++++...     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence            3344567898 444 4444447999999999765433221111    011124578999   68 6777776442     


Q ss_pred             --------CCCeEEEEECC---CCCCCeeeec--cc-----------ccceeEEEEecCCCCeEEEecCC-CcEEEEecc
Q 035558          151 --------DSAKVVVLDIR---FPTLPVVELQ--RH-----------QASVNAIAWAPHSSCHICTAGDD-SQALIWDLS  205 (253)
Q Consensus       151 --------~~~~i~~~d~~---~~~~~~~~~~--~~-----------~~~i~~~~~~~~~~~~l~~~~~d-g~i~iwd~~  205 (253)
                              +.. +..||+.   +.+. +....  ..           ....+.++..++| +..++++.- +.|..++..
T Consensus        91 ~~g~~~~g~~~-v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           91 FADQSSHGASS-FHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTSCCSSSCCE-EEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTT
T ss_pred             ccccccCCCCE-EEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCC
Confidence                    344 9999998   5543 32221  11           1248899999999 577777776 776666554


Q ss_pred             CCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          206 SMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ......-....  .........+.|+++|++..|++....+.+..+++
T Consensus       168 G~~~~~~~~~~--~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          168 GKTVSTFAWES--GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             SCCEEEEEECC--CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             CCEEeeeeecC--CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence            43211000000  00112234779999999988887766887877664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.90  E-value=0.0043  Score=47.74  Aligned_cols=190  Identities=8%  Similarity=0.090  Sum_probs=109.8

Q ss_pred             CCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-----CCC---e-EEEEeC--CCcEEEEEcCCC-CCeee
Q 035558           54 EPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-----GVG---V-FASVSA--DGSVRVFDLRDK-EHSTI  121 (253)
Q Consensus        54 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~---~-l~~~~~--dg~i~i~d~~~~-~~~~~  121 (253)
                      ...+++.....+-+.+||+ +++.++.+..  +.++.+..-     .++   + +++.-.  +++|.+|++... .....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3456776777889999999 6888887763  344444332     233   2 233333  578999987422 22222


Q ss_pred             eecc--C--CCCCCeeEEEe--eCCCCC-EEEEEEeCCCeEEEEECCCCC------CCeeeecccccceeEEEEecCCCC
Q 035558          122 IYES--S--EPDTPLVRLGW--NKQDPR-YMATIIMDSAKVVVLDIRFPT------LPVVELQRHQASVNAIAWAPHSSC  188 (253)
Q Consensus       122 ~~~~--~--~~~~~i~~~~~--~~~~~~-~l~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~  188 (253)
                      +...  +  .....++.+++  +|..+. ++++...++. +..|++....      +.+.++.. ...+-.+...+.. .
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~-g  192 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY-G  192 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT-T
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC-C
Confidence            2111  1  11135667777  674554 5666666665 9898884321      22444443 3567788888877 4


Q ss_pred             eEEEecCCCcEEEEeccCCCCCCCCCCCCeeec--cC-CCceeEEEE--cCCCC-ceEEEE-cCCcEEEEE
Q 035558          189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAY--TA-GAEIEQLQW--SSSQP-DWVAIA-FSTKLQILR  252 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~-~~~v~~~~~--~~~~~-~~~~~~-~~~~i~vw~  252 (253)
                      .|+.+-+|..|..++.+......   .......  ++ ...+..|+.  .++++ ++++++ .++...+|+
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~---~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSN---GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSC---CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             eEEEecccceEEEEeCCcCCCCC---ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            89999998766666644322100   0011122  22 246778887  55555 576666 566788876

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.87  E-value=0.0038  Score=51.97  Aligned_cols=55  Identities=15%  Similarity=0.062  Sum_probs=32.8

Q ss_pred             CcEEEEEcCCCCCeeeeeccCCCC--------CCeeEEEee-CCCC---CEEEEEEeCCCeEEEEECCCCC
Q 035558          106 GSVRVFDLRDKEHSTIIYESSEPD--------TPLVRLGWN-KQDP---RYMATIIMDSAKVVVLDIRFPT  164 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~~l~~~~~~~~~i~~~d~~~~~  164 (253)
                      +.|..+|.++++..-.... ..+.        .++. +... . ++   ..++.++.++. ++++|.++++
T Consensus       291 ~~v~AlD~~TG~~~W~~q~-~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~-l~~lD~~tG~  357 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQH-TPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGF-FYVVDRSNGK  357 (582)
T ss_dssp             SEEEEECTTTCCEEEEEES-STTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSE-EEEEETTTCC
T ss_pred             ceEEEEeCCCCCEEEEEeC-CCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCce-EEEEECCCCC
Confidence            5899999999874332221 1111        1221 2222 2 45   36777777777 9999998765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.86  E-value=0.0053  Score=47.61  Aligned_cols=186  Identities=12%  Similarity=0.077  Sum_probs=106.2

Q ss_pred             eEEEecCCCCCEEEEE------------eCCCeEEEEeccCc--ee-eeeeec-----ccccEEEEEec-C--CC--eEE
Q 035558           46 TSFDWNEAEPRRIGTS------------SIDTTCTIWDIERE--AV-DTQLIA-----HDKEVYDIAWG-G--VG--VFA  100 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~------------~~dg~i~vwd~~~~--~~-~~~~~~-----~~~~v~~~~~~-~--~~--~l~  100 (253)
                      -.+... +++..++++            ..+|.|.++|..+.  +. ...+.+     .......+.+. +  +.  +++
T Consensus        53 EDi~~~-~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           53 EDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CEEEEC-TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             ceeEEc-CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            366666 566554443            16899999998742  21 112222     22456677765 2  33  344


Q ss_pred             EEeC--CCcEEEEEcCCCCCeee-eeccC-CCCCCeeEEEeeCCCCCEEEEEEe-----------------CCCeEEEEE
Q 035558          101 SVSA--DGSVRVFDLRDKEHSTI-IYESS-EPDTPLVRLGWNKQDPRYMATIIM-----------------DSAKVVVLD  159 (253)
Q Consensus       101 ~~~~--dg~i~i~d~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~-----------------~~~~i~~~d  159 (253)
                      +-..  +.+|.+|++........ +.... ..-...+.+++.+ ++.+.++...                 .+. |..+|
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~-vyr~d  209 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSF-VTYYS  209 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEE-EEEEC
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccE-EEEEE
Confidence            4333  56788888876543222 22211 2223678899998 7877666431                 123 55555


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC-CCCc
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS-SQPD  238 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  238 (253)
                      ..   . +..+...-...+.++|+|++..+.++-+..+.|..|++.......     ...........-.++..+ +|..
T Consensus       210 ~~---~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~-----~~~~~~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          210 PN---D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT-----PLRVLSFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             TT---C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE-----EEEEEECSSEEEEEEECTTTCCE
T ss_pred             CC---e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe-----cCEEEeCCCCCceEEEeCCCCcE
Confidence            42   2 333333345678999999995444555678999999987432211     011123356778899998 5886


Q ss_pred             eEEEE
Q 035558          239 WVAIA  243 (253)
Q Consensus       239 ~~~~~  243 (253)
                      ++++.
T Consensus       281 wva~~  285 (355)
T 3sre_A          281 WVGCH  285 (355)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            66554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.85  E-value=0.002  Score=52.26  Aligned_cols=162  Identities=10%  Similarity=0.122  Sum_probs=92.8

Q ss_pred             EEEEEec-C-CC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEe-------eCCCCCEEEEEEeCC-----
Q 035558           88 VYDIAWG-G-VG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGW-------NKQDPRYMATIIMDS-----  152 (253)
Q Consensus        88 v~~~~~~-~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~l~~~~~~~-----  152 (253)
                      ...|+|. . .. ++++-...+.|++.|+.++..................++|       ++ +++.|+++...+     
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCccc
Confidence            4577887 2 34 4444444467888998877643333222212235889999       99 777677666554     


Q ss_pred             -CeEEEEECCCCCCCe-----eeecccccceeEEEEecCCCCeEEEecCCCcEEEEecc-------CCCC--CCCCC---
Q 035558          153 -AKVVVLDIRFPTLPV-----VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS-------SMGQ--PVEGG---  214 (253)
Q Consensus       153 -~~i~~~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~--~~~~~---  214 (253)
                       ..|.+++........     ..+.. -.....++++|++..++++-..++.|..+|+.       ++..  +....   
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence             126666633311111     22222 23456789999654566677788899999997       4442  10000   


Q ss_pred             -CCCeeeccCCCceeEEEEcCCCCc-eEEEEcCCcEEEE
Q 035558          215 -LDPILAYTAGAEIEQLQWSSSQPD-WVAIAFSTKLQIL  251 (253)
Q Consensus       215 -~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~vw  251 (253)
                       .......+.......|+|+|++.. +++-...+.|+.+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence             000111223455689999999984 4455556666654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.81  E-value=0.011  Score=49.62  Aligned_cols=162  Identities=11%  Similarity=0.035  Sum_probs=98.5

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec------ccccEEEEEec-C-CCeEEEEeCCCcEEEEEcC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA------HDKEVYDIAWG-G-VGVFASVSADGSVRVFDLR  114 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~-~-~~~l~~~~~dg~i~i~d~~  114 (253)
                      ..+.+++|.+.++.++++=...+.|+.++.........+..      ....+..|++. . ++++.+-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            45778999954555555545577898888764432222322      23467889988 4 5566677778899999987


Q ss_pred             CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       115 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      ... ...+..  ........++++|..+.++.+-..... .|...++..... .......-...+.+++++...++.++-
T Consensus       420 G~~-~~~l~~--~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~~~l~~P~gla~D~~~~~LYw~D  495 (628)
T 4a0p_A          420 GRS-VGVVLK--GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFFSGLSKPIALALDSRLGKLFWAD  495 (628)
T ss_dssp             SCE-EEEEEE--CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCe-EEEEEe--CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEeccCCCccEEEEeCCCCEEEEEe
Confidence            542 223322  122368899999955555555433331 266666653322 222222334578999999874444555


Q ss_pred             cCCCcEEEEeccCCC
Q 035558          194 GDDSQALIWDLSSMG  208 (253)
Q Consensus       194 ~~dg~i~iwd~~~~~  208 (253)
                      +..+.|..+++....
T Consensus       496 ~~~~~I~~~~~dG~~  510 (628)
T 4a0p_A          496 SDLRRIESSDLSGAN  510 (628)
T ss_dssp             TTTTEEEEEETTSCS
T ss_pred             CCCCEEEEEeCCCCc
Confidence            567889999986543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.70  E-value=0.0082  Score=45.28  Aligned_cols=186  Identities=11%  Similarity=0.034  Sum_probs=93.0

Q ss_pred             CceEEeec----C----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC-----CeEEEEe
Q 035558            5 PDLLATSS----D----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID-----TTCTIWD   71 (253)
Q Consensus         5 ~~~l~~~~----~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd   71 (253)
                      +.+++.|+    .    .+.+||+.+.  .+..+..+....     ..- ++..  .++.+++.|+.+     ..+.+||
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r-----~~~-~~~~--~~~~l~v~GG~~~~~~~~~~~~~d   84 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQ--EWSFLPSITRKR-----RYV-ASVS--LHDRIYVIGGYDGRSRLSSVECLD   84 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTT--EEEECCCCSSCC-----BSC-EEEE--ETTEEEEECCBCSSCBCCCEEEEE
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCC--eEEeCCCCChhh-----ccc-cEEE--ECCEEEEEcCCCCCccCceEEEEE
Confidence            45566665    1    6888888773  222222222111     111 2222  246677777754     3688999


Q ss_pred             ccCce---e--eeeeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC
Q 035558           72 IEREA---V--DTQLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD  141 (253)
Q Consensus        72 ~~~~~---~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  141 (253)
                      ..+.+   -  +..+....... +++..++.+++.|+.+     ..+.+||+.+.+-.. +.........- +++..  +
T Consensus        85 ~~~~~~~~W~~~~~~p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~~--~  159 (301)
T 2vpj_A           85 YTADEDGVWYSVAPMNVRRGLA-GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSM-LGDMQTAREGA-GLVVA--S  159 (301)
T ss_dssp             TTCCTTCCCEEECCCSSCCBSC-EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEE-EEECSSCCBSC-EEEEE--T
T ss_pred             CCCCCCCeeEECCCCCCCccce-eEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEE-CCCCCCCcccc-eEEEE--C
Confidence            87765   2  22222111111 1222267777777654     358889988765222 22222221111 22222  5


Q ss_pred             CCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558          142 PRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG  208 (253)
Q Consensus       142 ~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  208 (253)
                      +.+++.|+.++    ..+.+||..+..- .+..+...... .++... ++ ++++.|+.+     ..+.+||+.+..
T Consensus       160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG-AGVALL-ND-HIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-ceEEEE-CC-EEEEEeCCCCCcccceEEEEeCCCCc
Confidence            67777777543    2388999876431 11111111111 122222 34 577777754     468899988754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.69  E-value=0.011  Score=45.99  Aligned_cols=227  Identities=11%  Similarity=0.029  Sum_probs=111.5

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCC----CCEEEEEeCC-----CeEEEEec
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAE----PRRIGTSSID-----TTCTIWDI   72 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~d-----g~i~vwd~   72 (253)
                      ++++++++-.. .|++++ +..   .+.+..+....  .-......++|+ ++    +.++++-...     +.|..++.
T Consensus        40 pdG~l~V~e~~g~I~~i~-~g~---~~~~~~~~v~~--~g~~~p~gia~~-pdf~~~g~lYv~~~~~~~~~~~~v~r~~~  112 (352)
T 2ism_A           40 PDGGMLIAERPGRIRLFR-EGR---LSTYAELSVYH--RGESGLLGLALH-PRFPQEPYVYAYRTVAEGGLRNQVVRLRH  112 (352)
T ss_dssp             TTSCEEEEETTTEEEEEE-TTE---EEEEEECCCCC--STTCSEEEEEEC-TTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred             CCCeEEEEeCCCeEEEEE-CCC---ccEeecceEee--cCCCCceeEEEC-CCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence            35667777665 888887 221   12222221000  001467899999 55    4444444332     57777887


Q ss_pred             cCce------eeeeee---cccccEEEEEec-CCCeEEEEeCC-------------CcEEEEEcCCC------------C
Q 035558           73 EREA------VDTQLI---AHDKEVYDIAWG-GVGVFASVSAD-------------GSVRVFDLRDK------------E  117 (253)
Q Consensus        73 ~~~~------~~~~~~---~~~~~v~~~~~~-~~~~l~~~~~d-------------g~i~i~d~~~~------------~  117 (253)
                      ..++      .+..+.   ........++|. ++.++++.+..             |.|.-++....            .
T Consensus       113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~  192 (352)
T 2ism_A          113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGA  192 (352)
T ss_dssp             CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTS
T ss_pred             CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCC
Confidence            6431      111122   111123678998 88766664321             45555555431            0


Q ss_pred             CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-------eEEEEECCC---------------CCCCeeeeccccc
Q 035558          118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-------KVVVLDIRF---------------PTLPVVELQRHQA  175 (253)
Q Consensus       118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-------~i~~~d~~~---------------~~~~~~~~~~~~~  175 (253)
                      .......  ++ .....++|+|.++.++++-...+.       .|.+.....               ...++..+..| .
T Consensus       193 ~~~i~a~--G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~  268 (352)
T 2ism_A          193 RPEVYSL--GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-F  268 (352)
T ss_dssp             CTTEEEE--CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-C
T ss_pred             CccEEEE--cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC-C
Confidence            0011110  11 135668899855555444322221       133332111               01233333222 3


Q ss_pred             ceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          176 SVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       176 ~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ....++| .++ .++++.-..+.|...++......... .....+......+..+++.|+|..+++..
T Consensus       269 ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          269 PPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRV-LRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEE-EEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceee-cchheecccCCCeeEEEECCCCcEEEEEe
Confidence            4567888 455 46666667788888887654321000 00011223346789999999997655543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.69  E-value=0.0098  Score=45.62  Aligned_cols=150  Identities=8%  Similarity=0.080  Sum_probs=83.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEE-Eec--cCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTI-WDI--EREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~v-wd~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      ..+..+.+. +++.+++.+. +|.+.. .|-  .+-+.+.  ......+..+.+. ++..+ .++.+|.+++.+...++.
T Consensus       163 ~~~~~~~~~-~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t  237 (327)
T 2xbg_A          163 GVMRNLNRS-PSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN  237 (327)
T ss_dssp             CCEEEEEEC-TTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE
T ss_pred             cceEEEEEc-CCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe
Confidence            568899998 6677776664 454443 332  1112221  2345678888888 66554 556678877764222221


Q ss_pred             eeeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---ccccceeEEEEecCCCCeEEEec
Q 035558          119 STIIYES-SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ---RHQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       119 ~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      ...+... ......+..+.+.+ ++.+++++ .++. + ++....+.. -..+.   .....++++.|.+++  .+++++
T Consensus       238 W~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~-i-~~S~DgG~t-W~~~~~~~~~~~~~~~v~~~~~~--~~~~~G  310 (327)
T 2xbg_A          238 WGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGA-L-LCSQDGGQT-WQQDVDVKKVPSNFYKILFFSPD--QGFILG  310 (327)
T ss_dssp             ECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTC-E-EEESSTTSS-CEECGGGTTSSSCCCEEEEEETT--EEEEEC
T ss_pred             eEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCe-E-EEeCCCCcc-cEEcCccCCCCCCeEEEEEECCC--ceEEEc
Confidence            1111111 01122578899987 66666654 4665 5 344333332 22232   123567889998654  566777


Q ss_pred             CCCcEEEEec
Q 035558          195 DDSQALIWDL  204 (253)
Q Consensus       195 ~dg~i~iwd~  204 (253)
                      .+|.|.-++-
T Consensus       311 ~~G~i~~~~~  320 (327)
T 2xbg_A          311 QKGILLRYVT  320 (327)
T ss_dssp             STTEEEEECC
T ss_pred             CCceEEEEcC
Confidence            7898776653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.68  E-value=0.0093  Score=45.10  Aligned_cols=186  Identities=6%  Similarity=-0.052  Sum_probs=93.8

Q ss_pred             CceEEeec-C---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC----CeEEEEeccCce
Q 035558            5 PDLLATSS-D---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID----TTCTIWDIEREA   76 (253)
Q Consensus         5 ~~~l~~~~-~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~   76 (253)
                      +.+++.|+ +   .+.+||..+.  .+..+..+....     ..-..+.   .++.+++.|+.+    ..+.+||+.+.+
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~--~W~~~~~~p~~r-----~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDY--SWTDIRCPFEKR-----RDAACVF---WDNVVYILGGSQLFPIKRMDCYNVVKDS   81 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTT--EEEECCCCSCCC-----BSCEEEE---ETTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred             ceEEEEeCCCCCceEEEecCCCC--CEecCCCCCccc-----ceeEEEE---ECCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence            44556665 2   8999998873  222222222111     1112222   246677777754    578889988775


Q ss_pred             eee--eeecccccEEEEEecCCCeEEEEeCC------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           77 VDT--QLIAHDKEVYDIAWGGVGVFASVSAD------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        77 ~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      -..  .+....... +++..++.+++.|+.+      ..+.+||..+.+-. .+.........- +++..  ++.+++.|
T Consensus        82 W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~-~~~~~--~~~iyv~G  156 (306)
T 3ii7_A           82 WYSKLGPPTPRDSL-AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWH-TKPSMLTQRCSH-GMVEA--NGLIYVCG  156 (306)
T ss_dssp             EEEEECCSSCCBSC-EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEE-EECCCSSCCBSC-EEEEE--TTEEEEEC
T ss_pred             EEECCCCCccccce-eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceE-eCCCCcCCccee-EEEEE--CCEEEEEC
Confidence            222  222111111 1222267777888765      45889998876522 222222111111 22222  56677777


Q ss_pred             EeCC--------CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558          149 IMDS--------AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG  208 (253)
Q Consensus       149 ~~~~--------~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  208 (253)
                      +.++        ..+.+||..+..- .+..+..... -.++... ++ ++++.|+.+     ..+.+||+.+..
T Consensus       157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-NHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-cceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            6421        2288999876531 1111111111 1222222 44 577777754     468889988754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.65  E-value=0.0082  Score=47.38  Aligned_cols=144  Identities=8%  Similarity=0.110  Sum_probs=88.4

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-------
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-------   76 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------   76 (253)
                      +.-++.+-+ .||.-++...    ...+.++......+ ..|..+..+ ++|++||..+ +..|.|-.+..+.       
T Consensus        32 ~t~i~~a~~n~iR~~~i~~~----~~Yk~L~~~~~i~f-~~i~qlvlS-psG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           32 GTRIVFIQDNIIRWYNVLTD----SLYHSLNFSRHLVL-DDTFHVISS-TSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             TTEEEEEETTEEEEEETTTC----SSCEEEECTTTCCC-CTTCEEEEC-TTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             CCEEEEEECCEEEEEECCCC----CcceEEecCccccc-CceeEEEEC-CCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence            333444444 7777777653    22333322200001 357789999 8999999886 4578888876322       


Q ss_pred             -----eeeeeec------ccccEEEEEec----CCCeEEEEeCCCcEEEEEcCCCCC-eeee------eccCCCCCCeeE
Q 035558           77 -----VDTQLIA------HDKEVYDIAWG----GVGVFASVSADGSVRVFDLRDKEH-STII------YESSEPDTPLVR  134 (253)
Q Consensus        77 -----~~~~~~~------~~~~v~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~-~~~~------~~~~~~~~~i~~  134 (253)
                           ....++-      ...+|..+.||    .+..|++-..|+.|++||+..... +..+      +........|.+
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence                 0112221      24679999999    577999999999999999986332 1111      111222357889


Q ss_pred             EEeeCCCCCEEEEEE--eCCCeEEE
Q 035558          135 LGWNKQDPRYMATII--MDSAKVVV  157 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~--~~~~~i~~  157 (253)
                      ++|.+ ++-.|.+.+  ..|. |+-
T Consensus       185 ~~Fg~-~~lTLYvl~~t~~GD-IYA  207 (452)
T 3pbp_A          185 LEFSK-DGLTLYCLNTTEGGD-IFA  207 (452)
T ss_dssp             EEECT-TSSCEEEEECTTSCE-EEE
T ss_pred             EEEcC-CCcEEEEEecCCCCC-EEE
Confidence            99998 777666655  4454 543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.60  E-value=0.016  Score=45.73  Aligned_cols=151  Identities=9%  Similarity=0.093  Sum_probs=91.7

Q ss_pred             CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC-CC------
Q 035558           95 GVGVFASVSADGSVRVFDLRDKEHSTIIYESS-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT-LP------  166 (253)
Q Consensus        95 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~------  166 (253)
                      ++..++.+ .++.||.-++.....-+.+.... ..-..+..+..+| +|+++|..+..+  |.|..+..+. ..      
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~~--V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDNE--IFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECSSE--EEEEECCTTCSCCCCHHHH
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecCCe--EEEEEecCccccCcccccc
Confidence            44444443 24778888877544333333321 1223678899999 999999986553  8888887322 10      


Q ss_pred             ----eeeecc------cccceeEEEEecCCC--CeEEEecCCCcEEEEeccCCC-CCCCCCCC-C-eeeccCCCceeEEE
Q 035558          167 ----VVELQR------HQASVNAIAWAPHSS--CHICTAGDDSQALIWDLSSMG-QPVEGGLD-P-ILAYTAGAEIEQLQ  231 (253)
Q Consensus       167 ----~~~~~~------~~~~i~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~-~-~~~~~~~~~v~~~~  231 (253)
                          .+.+.-      ...+|..+.|+|-+.  ..|++-..|+.|++||+.... .|...... . .........|.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence                112221      246799999999653  289999999999999998732 22100000 0 01112236788999


Q ss_pred             EcCCCCceEEEE--cCCcEE
Q 035558          232 WSSSQPDWVAIA--FSTKLQ  249 (253)
Q Consensus       232 ~~~~~~~~~~~~--~~~~i~  249 (253)
                      |.+++-.+.+..  .+|.|.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEE
T ss_pred             EcCCCcEEEEEecCCCCCEE
Confidence            999776566644  556654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.60  E-value=0.014  Score=44.94  Aligned_cols=185  Identities=14%  Similarity=0.163  Sum_probs=108.1

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC---CCCC---EEEEEeC---CCeEEEEec--
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE---AEPR---RIGTSSI---DTTCTIWDI--   72 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~---~l~~~~~---dg~i~vwd~--   72 (253)
                      ..+|++..+ .+.+||+..     +.+..+..       +.++.+..-|   -.+.   ++++...   +++|.+|++  
T Consensus        41 s~ii~t~k~~gL~Vydl~G-----~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDG-----KMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             CEEEEEETTTEEEEEETTS-----CEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             cEEEEEcCCCCEEEEcCCC-----cEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            334444445 999999955     66666653       2355555542   1122   2333333   578999976  


Q ss_pred             cCceeeeeeec------cc-ccEEEEEe--c--CCC-eEEEEeCCCcEEEEEcCC---CCC-eeeeeccCCCCCCeeEEE
Q 035558           73 EREAVDTQLIA------HD-KEVYDIAW--G--GVG-VFASVSADGSVRVFDLRD---KEH-STIIYESSEPDTPLVRLG  136 (253)
Q Consensus        73 ~~~~~~~~~~~------~~-~~v~~~~~--~--~~~-~l~~~~~dg~i~i~d~~~---~~~-~~~~~~~~~~~~~i~~~~  136 (253)
                      .+++ +..+..      .. ..+..+++  +  .+. +++....+|.+..|++..   +.. .+.+..... .+.+-.+.
T Consensus       109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcv  186 (355)
T 3amr_A          109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMA  186 (355)
T ss_dssp             TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEE
T ss_pred             CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEE
Confidence            3333 333311      11 45666777  4  333 677788899999999943   211 122222222 23678888


Q ss_pred             eeCCCCCEEEEEEeCCCeEEEEECCCCC----CCeeeec-cc-ccceeEEEE--ecCCCCeEEEec-CCCcEEEEecc
Q 035558          137 WNKQDPRYMATIIMDSAKVVVLDIRFPT----LPVVELQ-RH-QASVNAIAW--APHSSCHICTAG-DDSQALIWDLS  205 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~-~~-~~~i~~~~~--~~~~~~~l~~~~-~dg~i~iwd~~  205 (253)
                      ..+ ....|+++-.+.+ |..||.+-..    ..+..+. ++ ...+..|++  .+++..+|++++ .+++..+||.+
T Consensus       187 vDd-~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          187 ADD-EYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EET-TTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EcC-CCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            988 7778888888877 8888865221    1122221 11 236778887  455532555555 67899999997

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.53  E-value=0.047  Score=49.28  Aligned_cols=221  Identities=9%  Similarity=0.033  Sum_probs=123.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEE---ecCCCCCEEEEEe----------CCCeEEEEeccCceeeee
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFD---WNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~   80 (253)
                      .|++.|..+.    +.+..++-...    ..+.+++   |......+++.|+          ..|.|+++++..++....
T Consensus       808 ~i~lidp~t~----~~i~~~~l~~n----E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv  879 (1158)
T 3ei3_A          808 NLLIIDQHTF----EVLHAHQFLQN----EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV  879 (1158)
T ss_dssp             EEEEEETTTC----CEEEEEECCTT----EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE
T ss_pred             EEEEEeCCCC----eEEEEEeCCCC----cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE
Confidence            6778877664    44333322221    2344444   4312347888886          357899999875442222


Q ss_pred             ee-cccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LI-AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~-~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      .+ ..+++|++++-.++.+++..  ..+|++|++...+.......  ... .+..+.... .++++++|..-.+ +.++.
T Consensus       880 ~~~~v~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L~~~~~--~~~-~i~~~~l~~-~~~~I~vgD~~~S-v~~~~  952 (1158)
T 3ei3_A          880 AEKEVKGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKELRTECN--HYN-NIMALYLKT-KGDFILVGDLMRS-VLLLA  952 (1158)
T ss_dssp             EEEEESSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCEEEEEE--ECC-CSCEEEEEE-ETTEEEEEESSBC-EEEEE
T ss_pred             EEEEcCCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceEEEEee--ccc-cEEEEEEec-cCCEEEEEEhhhe-EEEEE
Confidence            11 34678888876556444443  47899999987653331111  111 233223322 5678888887777 77765


Q ss_pred             CCCCCCCeeeec--ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCC--CCeeeccCCCceeEEE---E
Q 035558          160 IRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGL--DPILAYTAGAEIEQLQ---W  232 (253)
Q Consensus       160 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~v~~~~---~  232 (253)
                      .+.....+..+.  .+...++++.+-.++  .++.+..+|.+.+..............  .....+..+..|+++.   +
T Consensus       953 y~~~~~~L~~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl 1030 (1158)
T 3ei3_A          953 YKPMEGNFEEIARDFNPNWMSAVEILDDD--NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSL 1030 (1158)
T ss_dssp             EETTTTEEEEEEECCSCBCEEEEEEEETT--EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCS
T ss_pred             EEcCCCeEEEEEeecccccEEEEEEEccC--cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeee
Confidence            544332233333  244568888887664  677889999999998765321110000  0111222366677765   3


Q ss_pred             cCCC---------CceEEEEcCCcEEEE
Q 035558          233 SSSQ---------PDWVAIAFSTKLQIL  251 (253)
Q Consensus       233 ~~~~---------~~~~~~~~~~~i~vw  251 (253)
                      .+.+         ..++-++.+|.|-++
T Consensus      1031 ~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A         1031 VMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             CCC-------CEEEEEEEEETTSCEEEE
T ss_pred             ecCCCccccccccceEEEEecCCEEEEE
Confidence            3322         236677788877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.49  E-value=0.016  Score=43.83  Aligned_cols=147  Identities=14%  Similarity=0.092  Sum_probs=76.0

Q ss_pred             CCCEEEEEeCC------CeEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeC---------CCcEEEEEcCCC
Q 035558           54 EPRRIGTSSID------TTCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSA---------DGSVRVFDLRDK  116 (253)
Q Consensus        54 ~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~  116 (253)
                      ++.+++.|+.+      ..+.+||..+.+-..  .+....... +++..++.+++.|+.         -..+.+||+.+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            46677777755      458899988765222  222111111 122226677777764         345889999877


Q ss_pred             CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEE
Q 035558          117 EHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       117 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~  191 (253)
                      +-. .+....... .-.++...  ++.+++.|+.++    ..+.+||+.+.. ..+..+.........+.+  ++ ++++
T Consensus       180 ~W~-~~~~~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v  252 (306)
T 3ii7_A          180 TWT-ELCPMIEAR-KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVYV  252 (306)
T ss_dssp             EEE-EECCCSSCC-BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEEE
T ss_pred             eEE-ECCCccchh-hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEEE
Confidence            422 222222111 11222222  567777776543    138899987643 111112111112222222  44 5777


Q ss_pred             EecCC-----CcEEEEeccCCC
Q 035558          192 TAGDD-----SQALIWDLSSMG  208 (253)
Q Consensus       192 ~~~~d-----g~i~iwd~~~~~  208 (253)
                      .|+.+     ..+.+||+.+.+
T Consensus       253 ~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          253 LAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EECBCSSSBCCEEEEEETTTTE
T ss_pred             EeCcCCCeeeeeEEEEcCCCCe
Confidence            88754     567888887754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.46  E-value=0.023  Score=44.10  Aligned_cols=222  Identities=9%  Similarity=0.002  Sum_probs=112.6

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeec---CCCCccccCCeeEEEecCCC----CCEEEEEeC---C----CeEE
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLN---GNKNSEYCGPLTSFDWNEAE----PRRIGTSSI---D----TTCT   68 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~---d----g~i~   68 (253)
                      +++++++-.. .|++++. .+ .  +.+..+.   ...     .....|+++ ++    +.++++-+.   +    ..|.
T Consensus        39 dG~l~V~e~~g~I~~~d~-~G-~--~~~~~~~v~~~g~-----~g~~gia~~-pdf~~~g~lyv~~~~~~~~~~~~~~v~  108 (354)
T 3a9g_A           39 GGRYLVTERPGRLVLISP-SG-K--KLVASFDVANVGE-----AGLLGLALH-PEFPKKSWVYLYASYFAEGGHIRNRVI  108 (354)
T ss_dssp             TTEEEEEETTTEEEEECS-SC-E--EEEEECCCCCSTT-----CSEEEEEEC-TTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCeEEEEeCCCEEEEEeC-CC-c--eEeeccceeecCC-----CceeeEEeC-CCCCcCCEEEEEEeccCCCCCcceEEE
Confidence            5677777665 8888863 32 1  2222221   111     457899999 54    444444332   3    5677


Q ss_pred             EEeccCc-------ee-eeeeec-ccccEEEEEec-CCCeEEEEeCC-------------CcEEEEEcCCCC-------C
Q 035558           69 IWDIERE-------AV-DTQLIA-HDKEVYDIAWG-GVGVFASVSAD-------------GSVRVFDLRDKE-------H  118 (253)
Q Consensus        69 vwd~~~~-------~~-~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d-------------g~i~i~d~~~~~-------~  118 (253)
                      .++....       +. +..+.. .......|+|. ++.++++.+..             |.|.-++....-       .
T Consensus       109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~  188 (354)
T 3a9g_A          109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN  188 (354)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred             EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence            7776543       11 111221 11134678898 88766664431             445555543220       0


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC--eEEEEECCC---------------CCCCeeeecccccceeEEE
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA--KVVVLDIRF---------------PTLPVVELQRHQASVNAIA  181 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~---------------~~~~~~~~~~~~~~i~~~~  181 (253)
                      ..+...  ++. ....++|+|.++.++++-...+.  .|.+.....               ...++..+.........++
T Consensus       189 ~~i~a~--G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~  265 (354)
T 3a9g_A          189 SPIWSY--GHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS  265 (354)
T ss_dssp             CCEEEE--CCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred             CcEEEE--ccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence            011111  111 35679999855555554322211  244332111               0123333311224567888


Q ss_pred             Ee-------cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          182 WA-------PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       182 ~~-------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      |.       .++ .++++.-..+.|...++.......   .....+.+....+..+++.|+|..+++.
T Consensus       266 ~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~---~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          266 FVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVR---KISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             ECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEE---EEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             EECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCccc---ceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            83       456 577777777888888887532111   0001122235678999999999755554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.45  E-value=0.021  Score=43.35  Aligned_cols=185  Identities=9%  Similarity=-0.045  Sum_probs=90.8

Q ss_pred             eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-----C------CeEEEEeccCc
Q 035558            7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-----D------TTCTIWDIERE   75 (253)
Q Consensus         7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~i~vwd~~~~   75 (253)
                      +++.|++.+.+||..+.  .+.. ..+.....    ..-.+++.  .++.+++.|+.     .      ..+.+||..+.
T Consensus         7 l~~~GG~~~~~yd~~~~--~W~~-~~~~~p~~----r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   77 (315)
T 4asc_A            7 IFMISEEGAVAYDPAAN--ECYC-ASLSSQVP----KNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS   77 (315)
T ss_dssp             EEEEETTEEEEEETTTT--EEEE-EECCCCSC----SSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred             EEEEcCCceEEECCCCC--eEec-CCCCCCCC----ccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence            44555568999999884  2222 22221110    11122222  46777777773     1      12778888876


Q ss_pred             eeee--eeecccccEEEEEecCCCeEEEEeCC--------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEE
Q 035558           76 AVDT--QLIAHDKEVYDIAWGGVGVFASVSAD--------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM  145 (253)
Q Consensus        76 ~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  145 (253)
                      +-..  .+...... .+++..++.+++.|+.+        ..+.+||..+.+- ..+...+.....- +++..  ++.++
T Consensus        78 ~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~~--~~~iy  152 (315)
T 4asc_A           78 EWLGMPPLPSPRCL-FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-GESDPLPYVVYGH-TVLSH--MDLVY  152 (315)
T ss_dssp             EEEECCCBSSCEES-CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEE-EECCCCSSCCBSC-EEEEE--TTEEE
T ss_pred             eEEECCCCCcchhc-eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcE-eECCCCCCcccce-eEEEE--CCEEE
Confidence            5221  22111111 11222267777777742        4588999987642 1221211211111 22222  56777


Q ss_pred             EEEEe-CC----CeEEEEECCCCC-CCeeeecccccceeEEEEecCCCCeEEEecCCC-----cEEEEeccCCC
Q 035558          146 ATIIM-DS----AKVVVLDIRFPT-LPVVELQRHQASVNAIAWAPHSSCHICTAGDDS-----QALIWDLSSMG  208 (253)
Q Consensus       146 ~~~~~-~~----~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~  208 (253)
                      +.|+. ++    ..+.+||..+.. ..+..+...... .+++.. ++ ++++.|+.++     .+.+||+.+..
T Consensus       153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence            77776 21    138899987643 111111111111 122222 44 5777777554     57888887754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.45  E-value=0.021  Score=43.25  Aligned_cols=187  Identities=9%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             CCceEEeec---C---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC----C-----CeEE
Q 035558            4 KPDLLATSS---D---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI----D-----TTCT   68 (253)
Q Consensus         4 ~~~~l~~~~---~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~   68 (253)
                      ++.+++.|+   .   .+.+||..+.  .+..+..+....     ..- +++.  .++.+++.|+.    +     ..+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r-----~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~   93 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNG--TWLRLADLQVPR-----SGL-AGCV--VGGLLYAVGGRNNSPDGNTDSSALD   93 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTT--EEEECCCCSSCC-----BSC-EEEE--ETTEEEEECCEEEETTEEEECCCEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCC--eEeECCCCCccc-----ccc-eEEE--ECCEEEEECCCcCCCCCCeecceEE
Confidence            345666665   2   7888888773  222222221111     111 2222  24667777665    2     3588


Q ss_pred             EEeccCceee--eeeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCC
Q 035558           69 IWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD  141 (253)
Q Consensus        69 vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  141 (253)
                      +||+.+.+-.  ..+....... +++..++.+++.|+.+     ..+.+||+.+.+-. .+...+.....- +++..  +
T Consensus        94 ~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~-~~~~~--~  168 (308)
T 1zgk_A           94 CYNPMTNQWSPCAPMSVPRNRI-GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH-LVAPMLTRRIGV-GVAVL--N  168 (308)
T ss_dssp             EEETTTTEEEECCCCSSCCBTC-EEEEETTEEEEECCEETTEECCCEEEEETTTTEEE-ECCCCSSCCBSC-EEEEE--T
T ss_pred             EECCCCCeEeECCCCCcCcccc-EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEe-ECCCCCccccce-EEEEE--C
Confidence            8898776522  2222111111 1222267777777643     35888998876421 111111111111 22222  5


Q ss_pred             CCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558          142 PRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG  208 (253)
Q Consensus       142 ~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  208 (253)
                      +.+++.|+.++    ..+.+||+.+..- .+..+...... .+++.. ++ ++++.|+.+     ..+.+||+.+..
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVCVL-HN-CIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEEEE-CC-EEEEEeCCCCCCccceEEEEeCCCCc
Confidence            67777776543    2388999876431 01111111111 122222 44 577777754     568899988754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.44  E-value=0.021  Score=43.07  Aligned_cols=147  Identities=14%  Similarity=0.123  Sum_probs=75.4

Q ss_pred             CCCEEEEEeCCC-----eEEEEeccCceee--eeeecccccEEEEEecCCCeEEEEeCC-------CcEEEEEcCCCCCe
Q 035558           54 EPRRIGTSSIDT-----TCTIWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSAD-------GSVRVFDLRDKEHS  119 (253)
Q Consensus        54 ~~~~l~~~~~dg-----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~  119 (253)
                      ++.+++.|+.++     .+.+||+.+.+-.  ..+...... .+++..++.+++.|+.+       ..+.+||+.+.+-.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            467777777553     5778888776522  222211111 12222266777777643       35889998876422


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEec
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                      . +.......... +++..  ++.+++.|+.++    ..+.+||..+..- .+..+...... .+++.. ++ ++++.|+
T Consensus       187 ~-~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~-~i~v~GG  259 (302)
T 2xn4_A          187 Y-IAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCAV-NG-LLYVVGG  259 (302)
T ss_dssp             E-ECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECC
T ss_pred             E-CCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEEEE-CC-EEEEECC
Confidence            2 22222211112 22222  567778877653    2388999876431 11111111111 122222 44 5777777


Q ss_pred             CCC-----cEEEEeccCCC
Q 035558          195 DDS-----QALIWDLSSMG  208 (253)
Q Consensus       195 ~dg-----~i~iwd~~~~~  208 (253)
                      .++     .+.+||+.+..
T Consensus       260 ~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          260 DDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BCSSSBCCCEEEEETTTTE
T ss_pred             cCCCcccccEEEEcCCCCe
Confidence            553     48888887754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.44  E-value=0.021  Score=44.18  Aligned_cols=145  Identities=9%  Similarity=-0.029  Sum_probs=72.6

Q ss_pred             CCceEEeec-C--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-C---------CeEEEE
Q 035558            4 KPDLLATSS-D--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-D---------TTCTIW   70 (253)
Q Consensus         4 ~~~~l~~~~-~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~vw   70 (253)
                      ++.+++.|+ +  .+.+||+......+..+..+.....    ..- +++.  .++.+++.|+. +         ..+.+|
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R----~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~y   91 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR----DQA-TSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKY   91 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC----BSC-EEEE--ETTEEEEECCEEECTTSCEEECCCEEEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC----ccc-eEEE--ECCEEEEEcCCCCCCCccceeeccEEEE
Confidence            445556665 2  7888888642123333333321110    111 2222  24667777765 2         368889


Q ss_pred             eccCceee--eeee-cccccEEEEEecCCCeEEEEeCC---------------------------------------CcE
Q 035558           71 DIEREAVD--TQLI-AHDKEVYDIAWGGVGVFASVSAD---------------------------------------GSV  108 (253)
Q Consensus        71 d~~~~~~~--~~~~-~~~~~v~~~~~~~~~~l~~~~~d---------------------------------------g~i  108 (253)
                      |+.+.+-.  ..+. ........+. .++.+++.|+.+                                       ..+
T Consensus        92 d~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  170 (357)
T 2uvk_A           92 NPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL  170 (357)
T ss_dssp             ETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred             eCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence            98876522  2222 1111112222 267788888765                                       468


Q ss_pred             EEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC------CCeEEEEEC
Q 035558          109 RVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD------SAKVVVLDI  160 (253)
Q Consensus       109 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~------~~~i~~~d~  160 (253)
                      .+||..+.+-.. +.........-.+++..  ++.+++.|+.+      .. +..||+
T Consensus       171 ~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~-v~~~d~  224 (357)
T 2uvk_A          171 LSFDPSTQQWSY-AGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDA-VFELDF  224 (357)
T ss_dssp             EEEETTTTEEEE-EEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCC-EEEEEC
T ss_pred             EEEeCCCCcEEE-CCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCc-eEEEEe
Confidence            899998765322 22222111111233333  56677776642      23 777887

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.42  E-value=0.022  Score=42.83  Aligned_cols=147  Identities=12%  Similarity=0.059  Sum_probs=75.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCeee
Q 035558           54 EPRRIGTSSID-----TTCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHSTI  121 (253)
Q Consensus        54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  121 (253)
                      ++.+++.|+.+     ..+.+||+.+.+-..  .+...... .+++..++.+++.|+.+     ..+..||+.+.+-. .
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~-~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT-N  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE-E
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEE-e
Confidence            46677777643     368889988765222  22211111 11222267777777754     45889998876522 2


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      +.......... ++...  ++.+++.|+.++    ..+.+||+.+..- .+..+...... .+++.. ++ ++++.|+.+
T Consensus       190 ~~~~p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~  263 (301)
T 2vpj_A          190 VTPMATKRSGA-GVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY-VGATVL-RG-RLYAIAGYD  263 (301)
T ss_dssp             ECCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECCBC
T ss_pred             CCCCCcccccc-eEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc-eeEEEE-CC-EEEEEcCcC
Confidence            22222211111 22222  567777777642    2389999986531 11111111111 122222 44 577777755


Q ss_pred             -----CcEEEEeccCCC
Q 035558          197 -----SQALIWDLSSMG  208 (253)
Q Consensus       197 -----g~i~iwd~~~~~  208 (253)
                           ..+.+||+++.+
T Consensus       264 ~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          264 GNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SSSBEEEEEEEETTTTE
T ss_pred             CCcccccEEEEcCCCCe
Confidence                 356778877644

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.36  E-value=0.027  Score=42.46  Aligned_cols=186  Identities=11%  Similarity=0.131  Sum_probs=92.0

Q ss_pred             CceEEeec-C-----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC-----eEEEEecc
Q 035558            5 PDLLATSS-D-----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT-----TCTIWDIE   73 (253)
Q Consensus         5 ~~~l~~~~-~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~   73 (253)
                      +.+++.|+ +     .+.+||+.+.  .+..+..+....     .. .+++.  .++.+++.|+.++     .+.+||..
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r-----~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~   85 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEE--RWHQVAELPSRR-----CR-AGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPV   85 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTT--EEEEECCCSSCC-----BS-CEEEE--ETTEEEEESCBCSSSBCCCEEEEETT
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCC--cEeEcccCCccc-----cc-ceEEE--ECCEEEEEeCcCCCccccceEEECCC
Confidence            34555555 1     6788888773  222222222111     11 12222  2466777776543     58889988


Q ss_pred             Cceee--eeeecccccEEEEEecCCCeEEEEeCCC-----cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           74 REAVD--TQLIAHDKEVYDIAWGGVGVFASVSADG-----SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        74 ~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                      +.+-.  ..+...... .+++..++.+++.|+.++     .+.+||+.+.+-. .+......... .+++..  ++.+++
T Consensus        86 ~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~-~~~~~~--~~~iyv  160 (302)
T 2xn4_A           86 KDQWTSVANMRDRRST-LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF-HVAPMNTRRSS-VGVGVV--GGLLYA  160 (302)
T ss_dssp             TTEEEEECCCSSCCBS-CEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEE-EECCCSSCCBS-CEEEEE--TTEEEE
T ss_pred             CCceeeCCCCCccccc-eEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEe-ecCCCCCcccC-ceEEEE--CCEEEE
Confidence            76522  222211111 122222677778887653     4778888776422 22222221111 222222  567777


Q ss_pred             EEEeCC------CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558          147 TIIMDS------AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG  208 (253)
Q Consensus       147 ~~~~~~------~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  208 (253)
                      .|+.++      ..+.+||..+..- .+..+...... .+++.. ++ ++++.|+.+     ..+.+||+.+..
T Consensus       161 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          161 VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             ECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-ccEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCC
Confidence            776532      1288999876431 11111111111 122222 34 577777754     468899987754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.25  E-value=0.036  Score=43.00  Aligned_cols=138  Identities=13%  Similarity=0.051  Sum_probs=74.8

Q ss_pred             CCCcEEEEEcCCCCC-eeeeecc----CCCCCCeeEEEeeCC-CCC-EEEEEEeC--CCeEEEEECCCCCCC---eeeec
Q 035558          104 ADGSVRVFDLRDKEH-STIIYES----SEPDTPLVRLGWNKQ-DPR-YMATIIMD--SAKVVVLDIRFPTLP---VVELQ  171 (253)
Q Consensus       104 ~dg~i~i~d~~~~~~-~~~~~~~----~~~~~~i~~~~~~~~-~~~-~l~~~~~~--~~~i~~~d~~~~~~~---~~~~~  171 (253)
                      .+|.|.++|..+... ...+...    .........+.+.++ ++. +|+++...  +..|.+|++......   +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            689999999974321 1122111    111235566666552 232 34444332  345888887654322   22222


Q ss_pred             cc-ccceeEEEEecCCCCeEEEec---C--------------CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          172 RH-QASVNAIAWAPHSSCHICTAG---D--------------DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       172 ~~-~~~i~~~~~~~~~~~~l~~~~---~--------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                      +. -...+.+.+.++| .+.++..   .              .|.|.-+|.  .+ .       ......-...+.++|+
T Consensus       161 g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~-------~~~~~~l~~pNGia~s  229 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-V-------RVVAEGFDFANGINIS  229 (355)
T ss_dssp             CTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-C-------EEEEEEESSEEEEEEC
T ss_pred             cCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-E-------EEeecCCcccCcceEC
Confidence            21 2357899999998 5666654   1              234444443  21 1       2333334567899999


Q ss_pred             CCCCceEEE-EcCCcEEEEE
Q 035558          234 SSQPDWVAI-AFSTKLQILR  252 (253)
Q Consensus       234 ~~~~~~~~~-~~~~~i~vw~  252 (253)
                      |+++.++.+ +..+.|..|+
T Consensus       230 pDg~~lYvadt~~~~I~~~~  249 (355)
T 3sre_A          230 PDGKYVYIAELLAHKIHVYE  249 (355)
T ss_dssp             TTSSEEEEEEGGGTEEEEEE
T ss_pred             CCCCEEEEEeCCCCeEEEEE
Confidence            999866644 4566777665

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.09  E-value=0.05  Score=41.28  Aligned_cols=147  Identities=9%  Similarity=-0.023  Sum_probs=74.6

Q ss_pred             CCCEEEEEeCC--------CeEEEEeccCcee--eeeeecccccEEEEEecCCCeEEEEeC-C-----CcEEEEEcCCCC
Q 035558           54 EPRRIGTSSID--------TTCTIWDIEREAV--DTQLIAHDKEVYDIAWGGVGVFASVSA-D-----GSVRVFDLRDKE  117 (253)
Q Consensus        54 ~~~~l~~~~~d--------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~  117 (253)
                      ++.+++.|+.+        ..+.+||..+.+-  +..+...... .+++..++.+++.|+. +     ..+.+||..+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            46666777632        3588899887652  2222211111 1122226677777776 2     468899988764


Q ss_pred             CeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC----eEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEE
Q 035558          118 HSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA----KVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       118 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~  192 (253)
                      -. .+...+...... +++..  ++.+++.|+.++.    .+.+||..+..- .+..+...... .+++.. ++ ++++.
T Consensus       177 W~-~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~l~v~  249 (315)
T 4asc_A          177 WK-ELAPMQTARSLF-GATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS-LSLVSL-VG-TLYAI  249 (315)
T ss_dssp             EE-ECCCCSSCCBSC-EEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEE
T ss_pred             EE-ECCCCCCchhce-EEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc-eeEEEE-CC-EEEEE
Confidence            21 121111111111 22222  6678888877553    488899876531 11111111111 122222 34 57777


Q ss_pred             ecCC--------------CcEEEEeccCCC
Q 035558          193 AGDD--------------SQALIWDLSSMG  208 (253)
Q Consensus       193 ~~~d--------------g~i~iwd~~~~~  208 (253)
                      |+.+              ..+.+||+.+.+
T Consensus       250 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          250 GGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCccccCcCCccccccccCcEEEecCCCCh
Confidence            7753              236678877654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.08  E-value=0.075  Score=42.23  Aligned_cols=219  Identities=9%  Similarity=0.133  Sum_probs=126.2

Q ss_pred             ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeeec
Q 035558            6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLIA   83 (253)
Q Consensus         6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~   83 (253)
                      .++|--.+ +++|+|++..    ..++...-.      ..|.--.|-  +.+.|+..+ +..|+-|+++.. .+.+.+..
T Consensus        78 ~iiALrag~~lQiFnle~K----~klks~~~~------e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           78 KVIALKAGKTLQIFNIEMK----SKMKAHTMT------DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             SCEEEEETTEEEEEETTTT----EEEEEEECS------SCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             cEEEEecCCeEEEEchHHh----hhhcceecC------CCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhheec
Confidence            45555445 9999999985    445554443      457777785  466677665 468999999753 35555544


Q ss_pred             cc----ccEEEEEec-CCCeEEEEe-------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEee--CCCCCEEEEEE
Q 035558           84 HD----KEVYDIAWG-GVGVFASVS-------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWN--KQDPRYMATII  149 (253)
Q Consensus        84 ~~----~~v~~~~~~-~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~  149 (253)
                      |.    ..|-.-..+ +.++++..+       -.|.+.+|..+.+..    ....+|......+.+.  +....++..+.
T Consensus       145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE----EEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred             chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc----chheeeeeeeEEEecCCCCCCceEEEEEE
Confidence            43    345444555 666655433       247788998876641    1122332222222221  11112344443


Q ss_pred             eC--CCeEEEEECCCC--CC-Ce--ee---ec---ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCC
Q 035558          150 MD--SAKVVVLDIRFP--TL-PV--VE---LQ---RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLD  216 (253)
Q Consensus       150 ~~--~~~i~~~d~~~~--~~-~~--~~---~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  216 (253)
                      ..  |..+++.++...  .. +.  +.   +.   ...+...++..++.-+ .++.-..-|.|.+||++++....     
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~-----  294 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY-----  294 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE-----
T ss_pred             ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeee-----
Confidence            32  334999998654  11 11  11   11   1234566788888774 88888899999999999988554     


Q ss_pred             CeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558          217 PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ  249 (253)
Q Consensus       217 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~  249 (253)
                        ...-...+|..-+-+.....+++....|.|.
T Consensus       295 --~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          295 --MNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             --EEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             --eecccCCceEEecccCCCCcEEEEccCceEE
Confidence              3333345555445544444566666666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.06  E-value=0.17  Score=46.35  Aligned_cols=189  Identities=10%  Similarity=0.137  Sum_probs=104.5

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeeee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQLI   82 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~   82 (253)
                      ..++|--.+ +++|+++++.    ..++...-.      .+|.--.|-  +.+.|+..+ +..|+-|++... .+...+.
T Consensus        77 ~~iiALrag~~lQiFnl~~k----~klks~~~~------e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fd  143 (1630)
T 1xi4_A           77 SKVIALKAGKTLQIFNIEMK----SKMKAHTMT------DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFD  143 (1630)
T ss_pred             cceEEEecCCeEEEeehHHh----hhhcccccC------CCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence            345665555 9999999884    334443333      467777785  556666665 458999999743 3443343


Q ss_pred             cc----cccEEEEEec-CCCeEEEEe-------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEee--CCCCCEEEEE
Q 035558           83 AH----DKEVYDIAWG-GVGVFASVS-------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWN--KQDPRYMATI  148 (253)
Q Consensus        83 ~~----~~~v~~~~~~-~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~  148 (253)
                      .|    ...|..-..+ +.++++..|       -.|.+.+|..+.+...    ...+|.+....+...  +....++..+
T Consensus       144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ----~iegha~~F~~~~~~~~~~~~~l~~f~  219 (1630)
T 1xi4_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFKMEGNAEESTLFCFA  219 (1630)
T ss_pred             cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch----hhhHhHhhhheeccCCCCCCceEEEEE
Confidence            33    2345444445 566555332       3578888888765411    111222111111111  1112233322


Q ss_pred             Ee--CCCeEEEEECCCC--CCC------eeeecc---cccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC
Q 035558          149 IM--DSAKVVVLDIRFP--TLP------VVELQR---HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV  211 (253)
Q Consensus       149 ~~--~~~~i~~~d~~~~--~~~------~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  211 (253)
                      ..  .|+.+++.++...  ..+      +..+..   ......++..++..+ .+..-+.-|.|.+||+.++....
T Consensus       220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhh
Confidence            22  2334999988653  111      111111   133455677888764 78888899999999999988654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.96  E-value=0.074  Score=40.18  Aligned_cols=147  Identities=13%  Similarity=0.073  Sum_probs=73.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeCC-----CcEEEEEcCCCCCeee
Q 035558           54 EPRRIGTSSID-----TTCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSAD-----GSVRVFDLRDKEHSTI  121 (253)
Q Consensus        54 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  121 (253)
                      ++.+++.|+.+     ..+.+||+.+.+-..  .+......- +++..++.+++.|+.+     ..+.+||+.+.+-. .
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR-M  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE-E
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEe-e
Confidence            46677776643     358888988765222  222111111 1222267777777764     45889998876422 1


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDS----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      +.......... +++..  ++.+++.|+.++    ..+.+||+.+..- .+..+...... .+++.. ++ ++++.|+.+
T Consensus       199 ~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~  272 (308)
T 1zgk_A          199 ITAMNTIRSGA-GVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGITVH-QG-RIYVLGGYD  272 (308)
T ss_dssp             CCCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEEECCBC
T ss_pred             CCCCCCccccc-eEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEEEE-CC-EEEEEcCcC
Confidence            11111111112 22222  567777776642    2389999876431 11111111111 122222 34 577777754


Q ss_pred             -----CcEEEEeccCCC
Q 035558          197 -----SQALIWDLSSMG  208 (253)
Q Consensus       197 -----g~i~iwd~~~~~  208 (253)
                           ..+.+||+.+.+
T Consensus       273 ~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          273 GHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SSCBCCEEEEEETTTTE
T ss_pred             CCcccceEEEEcCCCCE
Confidence                 356777776643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.87  E-value=0.12  Score=41.13  Aligned_cols=192  Identities=9%  Similarity=0.143  Sum_probs=115.4

Q ss_pred             ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-------CCCeEEEEeccCcee
Q 035558            6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-------IDTTCTIWDIEREAV   77 (253)
Q Consensus         6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~   77 (253)
                      +.|+-..+ .|+-|++...   ..+.+.+..|..-.- ..|..-..+ ++.++++..+       -.|.+.+|..+. +.
T Consensus       117 ~~l~lVT~taVyHWsi~~~---s~P~kvFdR~~~L~~-~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~  190 (494)
T 1bpo_A          117 NTVALVTDNAVYHWSMEGE---SQPVKMFDRHSSLAG-CQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYSVDR-KV  190 (494)
T ss_dssp             TEEEEECSSEEEEEESSSS---CCCEEEEECCGGGTT-CEEEEEEEC-TTSSEEEEEEEEEETTEEEEEEEEEESTT-CC
T ss_pred             CeEEEEcCCeeEEecccCC---CCchhheecchhccc-ceEEEEEEC-CCCCeEEEEeecccCCcccceEEEeeccc-cc
Confidence            44555555 9999999653   255666666653321 467777777 7788776443       246788998874 44


Q ss_pred             eeeeecccccEEEEEec-C---CCeEEEEeC---CCcEEEEEcCCCC---C------eeeeeccCCCCCCeeEEEeeCCC
Q 035558           78 DTQLIAHDKEVYDIAWG-G---VGVFASVSA---DGSVRVFDLRDKE---H------STIIYESSEPDTPLVRLGWNKQD  141 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~---~~~l~~~~~---dg~i~i~d~~~~~---~------~~~~~~~~~~~~~i~~~~~~~~~  141 (253)
                      -+.+.+|...-..+... +   ..+|..+..   .+.+++-++....   .      ....+.......-..++..++ .
T Consensus       191 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-k  269 (494)
T 1bpo_A          191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-K  269 (494)
T ss_dssp             EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-T
T ss_pred             cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-c
Confidence            55677787666555554 1   124444444   2789999986541   0      011122223344566788888 5


Q ss_pred             CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCC
Q 035558          142 PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM  207 (253)
Q Consensus       142 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  207 (253)
                      -..+..-+.-|. +++||+.++.. +..-+-....|..-+-..... =++.....|.|.--.+...
T Consensus       270 ygviyviTK~G~-i~lyDleTgt~-i~~nrIs~~~iF~t~~~~~~~-Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          270 HDVVFLITKYGY-IHLYDLETGTC-IYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             TTEEEEEETTSE-EEEEETTTCCE-EEEEECCSSCEEEEEEETTTT-EEEEEETTCEEEEEEECTT
T ss_pred             CCEEEEEecCce-EEEEeccccee-eeeecccCCceEEecccCCCC-cEEEEccCceEEEEEEccc
Confidence            666777777776 99999999763 554444445555544444432 3444446776666655543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.73  E-value=0.083  Score=37.87  Aligned_cols=107  Identities=4%  Similarity=-0.087  Sum_probs=62.1

Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccc--------eeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQAS--------VNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                      .+..++|+| ++.+.++  .++. ++-.+..+...  ....+-...        ..++.|.|+| .+.++  .||.|+-+
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~-Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDK-IYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKA  112 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTE-EEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEE
T ss_pred             cceeEEECC-CccEEEE--eCCe-EEEECCCCCCc--ccccccccEecccccccceEEEECCCC-CEEEe--CCCEEEEe
Confidence            678999999 8887777  6665 77766544221  111111222        4789999999 34444  56988777


Q ss_pred             eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcE
Q 035558          203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKL  248 (253)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i  248 (253)
                      +-.+.....-.......-..-=..+..|.+.|+|. |.++. ++.+
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~l  156 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQF  156 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEE
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcE
Confidence            65432211100000001111124679999999996 66777 7764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.62  E-value=0.081  Score=37.92  Aligned_cols=151  Identities=5%  Similarity=-0.042  Sum_probs=80.8

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccccc--------EEEEEec-CCCeEEEEeCCCcEEEEEc
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKE--------VYDIAWG-GVGVFASVSADGSVRVFDL  113 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~-~~~~l~~~~~dg~i~i~d~  113 (253)
                      ..+..++|+ |++.+.+.  .+|.++-.+..+.... .+.+....        -.++.|. ++.+.++  .||.|.-++-
T Consensus        41 ~~~~~laf~-P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLS-PGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEEC-CCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            467899999 58886666  6788776666442211 11111122        3667777 7777766  5698887775


Q ss_pred             CCCCCeeeeecc----CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCC-----eeeec-ccccceeEEEEe
Q 035558          114 RDKEHSTIIYES----SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP-----VVELQ-RHQASVNAIAWA  183 (253)
Q Consensus       114 ~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-----~~~~~-~~~~~i~~~~~~  183 (253)
                      .+......+...    ...=..+..|.|.| ++.+.++.  ++. ++-...-.....     ...+. ..-....-+.|.
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~-lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~  190 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQ-FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS  190 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTE-EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCc-EEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence            433221111110    00112678899999 88888776  665 432221111100     01111 222234457799


Q ss_pred             cCCCCeEEEecCCCcEEEEeccCCC
Q 035558          184 PHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       184 ~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      |++ .+.++.  +|  ++|.....+
T Consensus       191 ~~G-~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          191 SVG-TLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             TTS-CEEEEE--TT--EEEEESCCC
T ss_pred             CCC-cEEEEe--CC--eEEecCCcc
Confidence            988 444444  66  555555443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.58  E-value=0.16  Score=38.55  Aligned_cols=185  Identities=9%  Similarity=-0.003  Sum_probs=88.7

Q ss_pred             eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC----CC-------eEEEEeccCc
Q 035558            7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI----DT-------TCTIWDIERE   75 (253)
Q Consensus         7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~vwd~~~~   75 (253)
                      +++.|+..+..||..+.  .+.. ..+.....    ..-.+++.  .++.+++.|+.    ++       .+.+||..+.
T Consensus        18 i~~~GG~~~~~yd~~~~--~W~~-~~~~~~~~----r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   88 (318)
T 2woz_A           18 ILLVNDTAAVAYDPMEN--ECYL-TALAEQIP----RNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS   88 (318)
T ss_dssp             EEEECSSEEEEEETTTT--EEEE-EEECTTSC----SSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred             hhhccccceEEECCCCC--ceec-ccCCccCC----ccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence            44445558889998874  2222 11211110    11122332  46777778873    12       1777888766


Q ss_pred             eeee--eeecccccEEEEEecCCCeEEEEeCC-------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           76 AVDT--QLIAHDKEVYDIAWGGVGVFASVSAD-------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        76 ~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                      +-..  .+...... .+++..++.+++.|+.+       ..+.+||..+.+-. .+...+.....- +++. . ++.+++
T Consensus        89 ~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~-~~~~-~-~~~iyv  163 (318)
T 2woz_A           89 EWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EVKNLPIKVYGH-NVIS-H-NGMIYC  163 (318)
T ss_dssp             EEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-EECCCSSCEESC-EEEE-E-TTEEEE
T ss_pred             cEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEe-ECCCCCCccccc-EEEE-E-CCEEEE
Confidence            5222  22211111 12222267777777754       24788888876422 121111111111 2222 2 667777


Q ss_pred             EEEeCC-----CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEecCC-----CcEEEEeccCCC
Q 035558          147 TIIMDS-----AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDD-----SQALIWDLSSMG  208 (253)
Q Consensus       147 ~~~~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  208 (253)
                      .|+.+.     ..+.+||..+..- .+..+...... .+++.. ++ ++++.|+.+     ..+.+||+.+..
T Consensus       164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             ECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence            776521     1388999886531 11111111111 122222 34 567777643     356788887765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.47  E-value=0.35  Score=41.25  Aligned_cols=153  Identities=9%  Similarity=0.031  Sum_probs=81.9

Q ss_pred             CCCEEEEEeCCC------eEEEEeccCce--eeeeeecccccEEEEEe-cCCCeEEEEeCCC--cEEEEEcCCCCCeeee
Q 035558           54 EPRRIGTSSIDT------TCTIWDIEREA--VDTQLIAHDKEVYDIAW-GGVGVFASVSADG--SVRVFDLRDKEHSTII  122 (253)
Q Consensus        54 ~~~~l~~~~~dg------~i~vwd~~~~~--~~~~~~~~~~~v~~~~~-~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  122 (253)
                      ++.+++.|+.++      .+.+||..+.+  .+..+...... .+++. .++.+++.|+.++  .+.+||..+..-....
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            677778877543      57888888754  22222211122 22333 3778888887655  6899999876522111


Q ss_pred             e--ccCCCCCCeeEEEeeCCCCCEEEEEEeC--C----CeEEEEECCCCCC--C--eeeecc---cccceeEEEEecCCC
Q 035558          123 Y--ESSEPDTPLVRLGWNKQDPRYMATIIMD--S----AKVVVLDIRFPTL--P--VVELQR---HQASVNAIAWAPHSS  187 (253)
Q Consensus       123 ~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~----~~i~~~d~~~~~~--~--~~~~~~---~~~~i~~~~~~~~~~  187 (253)
                      .  ..+........+.+....+.+++.|+.+  +    ..+..||+.+..-  .  -..+..   ....-.++....++ 
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-  608 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-  608 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-
Confidence            1  0111222233355565336677777762  1    2488999887551  0  111111   11111233333434 


Q ss_pred             CeEEEecC--------CCcEEEEeccCCC
Q 035558          188 CHICTAGD--------DSQALIWDLSSMG  208 (253)
Q Consensus       188 ~~l~~~~~--------dg~i~iwd~~~~~  208 (253)
                      ++++.|+.        ...+.+||+.+..
T Consensus       609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          609 KLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            57777774        3568899988754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.38  E-value=0.22  Score=38.04  Aligned_cols=189  Identities=7%  Similarity=-0.043  Sum_probs=95.9

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---eeee-eecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---VDTQ-LIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                      ..+.+|.|. ..+..+++ +..|.|. .....++   .+.. .......+.++.+.+ +.+..++.++.|.. ....++.
T Consensus        36 ~~~~~v~~~-~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~t  110 (327)
T 2xbg_A           36 ATILDMSFI-DRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQS  110 (327)
T ss_dssp             SCEEEEEES-SSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSS
T ss_pred             CcEEEEEEC-CCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCCC
Confidence            578999987 55566664 4577653 3333333   2211 111244678888864 33444556665443 2333443


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      ...+.........+..+.+.+ ++..++++ .++. |.. ....+..-..........+..+++.|++ .+++.+. +|.
T Consensus       111 W~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~-v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~  184 (327)
T 2xbg_A          111 WSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGA-IYR-TKDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVSS-RGS  184 (327)
T ss_dssp             CEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCC-EEE-ESSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEET-TSS
T ss_pred             ceECccccCCCCCeEEEEEEC-CCCEEEEe-CCcc-EEE-EcCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEEC-CCc
Confidence            333322212223567787765 55555544 4554 432 1111221112222345578899999987 5666654 454


Q ss_pred             EEE-EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEE
Q 035558          199 ALI-WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQI  250 (253)
Q Consensus       199 i~i-wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~v  250 (253)
                      +.. .|-. +..-.      .........+..+++.+++. +++++.++.+.+
T Consensus       185 ~~~S~d~g-G~tW~------~~~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~  229 (327)
T 2xbg_A          185 FYSTWEPG-QTAWE------PHNRTTSRRLHNMGFTPDGR-LWMIVNGGKIAF  229 (327)
T ss_dssp             EEEEECTT-CSSCE------EEECCSSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred             EEEEeCCC-CCcee------ECCCCCCCccceeEECCCCC-EEEEeCCceEEE
Confidence            433 3321 11110      11223456788899988886 555665665544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.38  E-value=0.23  Score=38.31  Aligned_cols=151  Identities=13%  Similarity=0.175  Sum_probs=80.3

Q ss_pred             cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc----CCCCCCeeEEEeeCC--CCCEEEEE-E--eCCCe
Q 035558           85 DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES----SEPDTPLVRLGWNKQ--DPRYMATI-I--MDSAK  154 (253)
Q Consensus        85 ~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~i~~~~~~~~--~~~~l~~~-~--~~~~~  154 (253)
                      -...+.|+|. +++++++--..|.|++++...++.. .+...    .........|+++|+  .+..|.+. +  .++. 
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~-  108 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR-  108 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE-
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE-
Confidence            3467899999 8887777655899999986655422 22111    123457889999993  13344432 2  2333 


Q ss_pred             EEEEECCCCC-------CCee---eec-ccccceeEEEEecCCCCeEEEecC-------------CCcEEEEeccCCCCC
Q 035558          155 VVVLDIRFPT-------LPVV---ELQ-RHQASVNAIAWAPHSSCHICTAGD-------------DSQALIWDLSSMGQP  210 (253)
Q Consensus       155 i~~~d~~~~~-------~~~~---~~~-~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~  210 (253)
                      |.-|.+....       ....   .+. .....-..|+|.|+| .+.++.+.             -|.|.-.+... +.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~ip  186 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EPA  186 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SBC
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCC-Ccc
Confidence            6666654411       1111   121 112234679999999 56665442             24444444332 111


Q ss_pred             CCCC--CCCeeeccCCCceeEEEEcCCCCceE
Q 035558          211 VEGG--LDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       211 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      ....  .......+|. ....++|+|++..++
T Consensus       187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~  217 (347)
T 3das_A          187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFA  217 (347)
T ss_dssp             TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEE
T ss_pred             CCCCCCCCeEEeeCCC-CcceEEECCCCCEEE
Confidence            1000  0123444554 455899999876443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.32  E-value=0.26  Score=38.16  Aligned_cols=101  Identities=6%  Similarity=-0.012  Sum_probs=58.4

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeeee---cccccEEEEEec-C---CCeEEEEeC-C-----CcE
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQLI---AHDKEVYDIAWG-G---VGVFASVSA-D-----GSV  108 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---~~~~~v~~~~~~-~---~~~l~~~~~-d-----g~i  108 (253)
                      ....++|. +++++++ +..+|.|++++  +++  .+..+.   ........|+++ +   +..|+.+.. .     +.|
T Consensus        32 ~P~~ia~~-pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           32 VPWALAFL-PDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CEEEEEEC-TTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CceEEEEc-CCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45689999 7888555 45679999998  343  222111   123567899999 6   445544433 2     568


Q ss_pred             EEEEcCCCCC--eeeeec-cC---CCCCCeeEEEeeCCCCCEEEEEE
Q 035558          109 RVFDLRDKEH--STIIYE-SS---EPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus       109 ~i~d~~~~~~--~~~~~~-~~---~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      ..++......  ...+.. ..   ........++|.| ++.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            8888764321  111211 11   1112346899999 786666543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.26  E-value=0.65  Score=42.11  Aligned_cols=187  Identities=10%  Similarity=0.015  Sum_probs=100.3

Q ss_pred             CCeeEEEecCCC-----CCEEEEEeC-CCeEEEEeccCceeeeeee-cccccEEEEEec---CCCeEEEEeCCCcEEEEE
Q 035558           43 GPLTSFDWNEAE-----PRRIGTSSI-DTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG---GVGVFASVSADGSVRVFD  112 (253)
Q Consensus        43 ~~v~~~~~~~~~-----~~~l~~~~~-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~dg~i~i~d  112 (253)
                      ..|.|+++.|..     .++++.|.. |++|+|+++.+.+.+.... +......++.+.   ...+|..|-.||.+.-+.
T Consensus       554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~  633 (1158)
T 3ei3_A          554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG  633 (1158)
T ss_dssp             SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence            679999997422     478999996 9999999998766544322 112345555554   345788899999987666


Q ss_pred             cCC--CCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccce-eEEEEecCC-CC
Q 035558          113 LRD--KEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASV-NAIAWAPHS-SC  188 (253)
Q Consensus       113 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i-~~~~~~~~~-~~  188 (253)
                      +..  +..........+ ..++.-..+.. .+..-+.+..+.. ..+|--+. +  +....-....+ ....|+... +.
T Consensus       634 ~d~~tg~l~d~r~~~LG-~~pv~L~~~~~-~~~~~V~a~s~rp-~liy~~~~-~--l~~s~l~~~~v~~~~~F~se~~~~  707 (1158)
T 3ei3_A          634 LNIETGLLSDRKKVTLG-TQPTVLRTFRS-LSTTNVFACSDRP-TVIYSSNH-K--LVFSNVNLKEVNYMCPLNSDGYPD  707 (1158)
T ss_dssp             ECTTTCCEEEEEEEECC-SSCCEEEEEES-SSCEEEEEESSSC-EEEEESSS-S--EEEEEBSSSCCCEEEEECCSSSTT
T ss_pred             EcCCCCccccceeEEcC-CCceEEEEEee-CCceeEEEECCCC-EEEEEcCC-c--eEEeccChHHhceEeccCcccCCC
Confidence            543  322111111112 22444444443 3333333333444 34443321 2  11111111223 223453321 12


Q ss_pred             eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          189 HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       189 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      -++..+ ++.++|..+......      +.....-...+..++++|..+.++.+
T Consensus       708 g~v~~~-~~~LrI~~i~~~~~~------~~~~ipL~~Tprri~y~~~~~~~~v~  754 (1158)
T 3ei3_A          708 SLALAN-NSTLTIGTIDEIQKL------HIRTVPLYESPRKICYQEVSQCFGVL  754 (1158)
T ss_dssp             EEEEEC-SSCEEEEEECCSSSE------EEEEEECSSEEEEEEEEGGGTEEEEE
T ss_pred             cEEEEc-CCceEEEEecccCCe------eEEEEeCCCCceEEEEcCCCCEEEEE
Confidence            244333 456999988654322      23444556789999999988755543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.01  E-value=0.65  Score=39.91  Aligned_cols=184  Identities=6%  Similarity=0.024  Sum_probs=98.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-----cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-----AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK  116 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  116 (253)
                      ..|.++...  ++ .|..|+.+ -|..+|..+++.. .+.     .....|.++... ++.+.+ ++.+| +..+|..+.
T Consensus       103 ~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~  175 (758)
T 3ott_A          103 TDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG  175 (758)
T ss_dssp             SCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTT
T ss_pred             ceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC
Confidence            357666543  34 56666666 5788888765532 221     113467787777 666555 44444 777887665


Q ss_pred             CCeeeeeccCC---CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec-ccccceeEEEEecCCCCeEEE
Q 035558          117 EHSTIIYESSE---PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ-RHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       117 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~  192 (253)
                      +.. .......   ....|.++...+ ++..|..++. ++ +..+|..+..  ...+. .....|.++...+++  .|..
T Consensus       176 ~~~-~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~G-l~~~~~~~~~--~~~~~~l~~~~i~~i~~d~~g--~lWi  247 (758)
T 3ott_A          176 KFE-GIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GY-LFQYFPSTGQ--IKQTEAFHNNSIKSLALDGNG--DLLA  247 (758)
T ss_dssp             EEE-EECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EE-EEEEETTTTE--EEEEEEEEEEEEEEEEECTTC--CEEE
T ss_pred             ceE-EecCCCccccccceeEEEEEEC-CCCEEEEEEC-CC-CeEEcCCCCe--EEeccCCCCCeEEEEEEcCCC--CEEE
Confidence            421 1111110   122478887776 5555555554 45 9999976543  22221 123458888888777  3555


Q ss_pred             ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      |+. +-+.+++..+...............-....|.++...+++..+++.
T Consensus       248 gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT  296 (758)
T 3ott_A          248 GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT  296 (758)
T ss_dssp             EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred             EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence            554 4577888765431110000000000123468888888877655543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.96  E-value=0.36  Score=36.54  Aligned_cols=106  Identities=7%  Similarity=0.045  Sum_probs=55.7

Q ss_pred             CCCEEEEEeCC-------CeEEEEeccCceeee--eeecccccEEEEEecCCCeEEEEeC------CCcEEEEEcCCCCC
Q 035558           54 EPRRIGTSSID-------TTCTIWDIEREAVDT--QLIAHDKEVYDIAWGGVGVFASVSA------DGSVRVFDLRDKEH  118 (253)
Q Consensus        54 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~  118 (253)
                      ++.+++.|+.+       ..+.+||..+.+-..  .+...... .+++..++.+++.|+.      -..+.+||+.+.+-
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            46677777754       257788887765222  22111111 1112226677777764      23589999987652


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC----eEEEEECCCCC
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA----KVVVLDIRFPT  164 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~  164 (253)
                      . .+......... .+++..  ++.+++.|+.++.    .+.+||+.+..
T Consensus       188 ~-~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          188 K-DLAPMKTPRSM-FGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             E-EECCCSSCCBS-CEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             E-ECCCCCCCccc-ceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            2 22222221111 222222  5677788776432    37789987654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.90  E-value=0.73  Score=39.60  Aligned_cols=188  Identities=7%  Similarity=0.000  Sum_probs=103.2

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      ..|.++.-. .++ .|..|+.+| +..||..+.+...........|.++...++ .|..++.+ -+..+|..+.+.....
T Consensus        63 ~~i~~i~~d-~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g-~lWigt~~-Gl~~~~~~~~~~~~~~  137 (758)
T 3ott_A           63 TRIYCGVII-DNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGD-TLWLGALN-GLYTYQLQSRKLTSFD  137 (758)
T ss_dssp             SCEEEEEEE-TTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred             ceEEEEEEc-CCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence            468887765 444 566777666 788998876533211112235666644344 45555555 5788888765422110


Q ss_pred             e-ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec--c----cccceeEEEEecCCCCeEEEecC
Q 035558          123 Y-ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ--R----HQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       123 ~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      . ........|.++.... ++.+.+ ++ .++ +..+|..+..  ...+.  .    ....|.++...+++ ..|..|..
T Consensus       138 ~~~~~l~~~~i~~i~~d~-~g~lWi-gt-~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~  210 (758)
T 3ott_A          138 TRRNGLPNNTIYSIIRTK-DNQIYV-GT-YNG-LCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE  210 (758)
T ss_dssp             HHHHCCSCSCEEEEEECT-TCCEEE-EE-TTE-EEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE
T ss_pred             cCCCCcCCCeEEEEEEcC-CCCEEE-Ee-CCC-HhhCccCCCc--eEEecCCCccccccceeEEEEEECCC-CEEEEEEC
Confidence            1 1112233678887776 565554 44 345 8889876533  22111  1    12247888887766 35555553


Q ss_pred             CCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          196 DSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       196 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                       +-+..+|..+.....       ...-....|.++...+++..+++ + ++.+.+++
T Consensus       211 -~Gl~~~~~~~~~~~~-------~~~l~~~~i~~i~~d~~g~lWig-T-~~Gl~~~~  257 (758)
T 3ott_A          211 -GYLFQYFPSTGQIKQ-------TEAFHNNSIKSLALDGNGDLLAG-T-DNGLYVYH  257 (758)
T ss_dssp             -EEEEEEETTTTEEEE-------EEEEEEEEEEEEEECTTCCEEEE-E-TTEEEEEC
T ss_pred             -CCCeEEcCCCCeEEe-------ccCCCCCeEEEEEEcCCCCEEEE-e-CCceeEEe
Confidence             457788876543111       00112346888888888875544 3 34555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.87  E-value=0.54  Score=37.84  Aligned_cols=107  Identities=10%  Similarity=0.197  Sum_probs=58.7

Q ss_pred             ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC------CCCCCeeEEEeeCC--CCCEEEEEEeC-----
Q 035558           86 KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESS------EPDTPLVRLGWNKQ--DPRYMATIIMD-----  151 (253)
Q Consensus        86 ~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~i~~~~~~~~--~~~~l~~~~~~-----  151 (253)
                      ...+.|+|. +++++++-...+.|++++..++... .+....      .....+..|+|+|+  .+..|.++...     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            356789999 8887776544457888876544422 222111      12457789999993  04444444321     


Q ss_pred             -------CCeEEEEECCCCC------CCee-eecc-cccceeEEEEecCCCCeEEEec
Q 035558          152 -------SAKVVVLDIRFPT------LPVV-ELQR-HQASVNAIAWAPHSSCHICTAG  194 (253)
Q Consensus       152 -------~~~i~~~d~~~~~------~~~~-~~~~-~~~~i~~~~~~~~~~~~l~~~~  194 (253)
                             ...|.-++.....      +.+. .+.. .......|+|.|+| ++.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                   1226666654321      0111 1221 12346889999999 4555544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.85  E-value=0.45  Score=36.82  Aligned_cols=103  Identities=8%  Similarity=-0.110  Sum_probs=58.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-eeeeee---cccccEEEEEec-C---CCeEEEEeC----C----C
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-VDTQLI---AHDKEVYDIAWG-G---VGVFASVSA----D----G  106 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~-~---~~~l~~~~~----d----g  106 (253)
                      .....++|. +++++++ +..+|.|++++. +++ .+..+.   ........|+++ +   +..|..+..    +    .
T Consensus        29 ~~P~~ia~~-pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPL-GGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEE-ETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEc-CCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            356789999 7787554 566799999974 444 222211   123467899998 5   445544433    3    5


Q ss_pred             cEEEEEcCCCC--C--eeeeec-c-CCCCCCeeEEEeeCCCCCEEEEEE
Q 035558          107 SVRVFDLRDKE--H--STIIYE-S-SEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus       107 ~i~i~d~~~~~--~--~~~~~~-~-~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      .|..++.....  .  ...+.. . .........|+|.| ++.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G  153 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG  153 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence            67777776541  0  111111 1 11111356799999 887666643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.65  E-value=0.81  Score=42.20  Aligned_cols=192  Identities=9%  Similarity=0.144  Sum_probs=102.0

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-------CCCeEEEEeccCce
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-------IDTTCTIWDIEREA   76 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~   76 (253)
                      .+.|+-.++ .|.-|++...   ..+.+.+..|..-.- ..|..-..+ ++.++++..+       ..|.+.+|..+.+ 
T Consensus       116 ~~~l~lVT~~aVyHW~~~~~---s~P~k~fdR~~~L~~-~QIinY~~d-~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-  189 (1630)
T 1xi4_A          116 LNTVALVTDNAVYHWSMEGE---SQPVKMFDRHSSLAG-CQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYSVDRK-  189 (1630)
T ss_pred             CCeeEEEcCCeEEEeccCCC---CccHHHHhcchhccc-CeeEEeeeC-CCCCeEEEEeeccCCCcccceeeeeecccc-
Confidence            344555555 9999999642   245555555542221 456677777 7777766443       3578899988743 


Q ss_pred             eeeeeecccccEEEEEec----CCCeEEEEeC---CCcEEEEEcCCC-C--C------eeeeeccCCCCCCeeEEEeeCC
Q 035558           77 VDTQLIAHDKEVYDIAWG----GVGVFASVSA---DGSVRVFDLRDK-E--H------STIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~----~~~~l~~~~~---dg~i~i~d~~~~-~--~------~~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      ..+.+.||...-..+...    ...++..+..   .+.+++-++... .  .      ....+.......-..++..++ 
T Consensus       190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-  268 (1630)
T 1xi4_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-  268 (1630)
T ss_pred             cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-
Confidence            344455665544333333    1122222222   368999988654 1  0      011112222233445677777 


Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      .-..+...+.-|. +++||+.++.. +..-+-...+|...+-.+... =++.....|.|.--.+..
T Consensus       269 k~g~iy~itk~G~-~~~~d~~t~~~-i~~~ris~~~iF~~~~~~~~~-g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          269 KHDVVFLITKYGY-IHLYDLETGTC-IYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             ccCEEEEEecCce-EEEEecccchh-hhhccccCCceEEeccCCCCC-ceEEEcCCceEEEEEEcc
Confidence            5556666677777 99999998763 333222233343333332221 233333555555444443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.20  E-value=0.77  Score=35.27  Aligned_cols=139  Identities=9%  Similarity=-0.045  Sum_probs=62.4

Q ss_pred             CeEEEEeccCceee--eeeecccccEEEEEecCCCeEEEEeC------CCcEEEEEc--CCCCCeeeeeccCCCCCCee-
Q 035558           65 TTCTIWDIEREAVD--TQLIAHDKEVYDIAWGGVGVFASVSA------DGSVRVFDL--RDKEHSTIIYESSEPDTPLV-  133 (253)
Q Consensus        65 g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~~~~~~~~~~~~~i~-  133 (253)
                      ..+.+||..+.+-.  ..+......-.+++..++.+++.|+.      ...+..||+  .+.. ...+........... 
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccc
Confidence            47889998876522  22221111102223236677777764      345777877  3332 222222111111111 


Q ss_pred             EEEeeCCCCCEEEEEEeCC---------------------CeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEE
Q 035558          134 RLGWNKQDPRYMATIIMDS---------------------AKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHIC  191 (253)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~---------------------~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~  191 (253)
                      ++...  ++.+++.|+.+.                     ..+.+||+.+..- .+..+......- ++ ..-++ ++++
T Consensus       247 ~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~-~i~v  321 (357)
T 2uvk_A          247 FAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYG-VS-LPWNN-SLLI  321 (357)
T ss_dssp             EEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSS-EE-EEETT-EEEE
T ss_pred             eEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccc-ee-EEeCC-EEEE
Confidence            12222  567777777431                     1278899886541 122222211211 22 22344 5777


Q ss_pred             EecCCC------cEEEEeccCCCC
Q 035558          192 TAGDDS------QALIWDLSSMGQ  209 (253)
Q Consensus       192 ~~~~dg------~i~iwd~~~~~~  209 (253)
                      .|+.++      .+.++++++.+.
T Consensus       322 ~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          322 IGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             EEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             EeeeCCCCCEeeeEEEEEEcCcEe
Confidence            777542      355567776653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.07  E-value=0.66  Score=35.68  Aligned_cols=107  Identities=9%  Similarity=-0.050  Sum_probs=62.0

Q ss_pred             ceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEec--CCCCCEEEEE-eCCCeEEEEeccCceeeeee
Q 035558            6 DLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWN--EAEPRRIGTS-SIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         6 ~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~   81 (253)
                      .+++++.+ .|.-.|..++    +....++....    .++....-.  +.++..++.. +.||.|..++.+++.....+
T Consensus        12 ~V~v~t~dG~l~Ald~~tG----~~~W~~~~~~~----~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNG----HIIWSIEPENF----QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEETTSCEEEEETTTT----EEEEEECGGGS----CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCC----cEEEEecCCcc----CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            34555556 9999999888    66666554310    222222111  0122333333 58999999999888644433


Q ss_pred             ec----ccccEEE---EEe------cCCCeEEEEeCCCcEEEEEcCCCCCee
Q 035558           82 IA----HDKEVYD---IAW------GGVGVFASVSADGSVRVFDLRDKEHST  120 (253)
Q Consensus        82 ~~----~~~~v~~---~~~------~~~~~l~~~~~dg~i~i~d~~~~~~~~  120 (253)
                      ..    ...++..   ...      +.+..+++|+.+|.+...|+++++...
T Consensus        84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A           84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence            21    1122221   000      146688899999999999999998443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.64  E-value=1.2  Score=34.49  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=44.2

Q ss_pred             cceeEEEEec-------CCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCc
Q 035558          175 ASVNAIAWAP-------HSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTK  247 (253)
Q Consensus       175 ~~i~~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  247 (253)
                      ..+..++|.+       ++ .++++.-..+.|...++.......    ....+......+..+++.|+|.. +.+..+..
T Consensus       271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~rp~~v~~~pdG~l-yv~td~~~  344 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTE----DGRILTDRGQRIRDVRTGPDGYL-YVLTDESS  344 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEE----EEEESGGGCCCEEEEEECTTSCE-EEEECSTT
T ss_pred             cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEee----eEEcccCCCCceeEEEECCCCcE-EEEEeCCC
Confidence            3567788864       35 577777778888888887532111    00111233458999999999984 44433344


Q ss_pred             EEEEEC
Q 035558          248 LQILRV  253 (253)
Q Consensus       248 i~vw~l  253 (253)
                      -+||+|
T Consensus       345 g~I~ri  350 (353)
T 2g8s_A          345 GELLKV  350 (353)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            566654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.45  E-value=0.66  Score=35.69  Aligned_cols=110  Identities=8%  Similarity=0.028  Sum_probs=63.4

Q ss_pred             CCEEEEEeCCCeEEEEeccCceeeeeeecc-cccEEEEEec----CCCeEEEE-eCCCcEEEEEcCCCCCeeeeeccC-C
Q 035558           55 PRRIGTSSIDTTCTIWDIEREAVDTQLIAH-DKEVYDIAWG----GVGVFASV-SADGSVRVFDLRDKEHSTIIYESS-E  127 (253)
Q Consensus        55 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~----~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-~  127 (253)
                      +.+++.++.||.|.-+|.++|+....++.. ..++....-.    ++..++.. +.||.|..++..++.......... .
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            457888999999999999999988887643 1222222111    22333333 589999999988764221111100 0


Q ss_pred             CCCCeeE---EEe-eC---CCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558          128 PDTPLVR---LGW-NK---QDPRYMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus       128 ~~~~i~~---~~~-~~---~~~~~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                      ...++..   ... .+   ..+..+++++.++. +...|+++++.
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~  133 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEI  133 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcE
Confidence            0112211   000 00   03456778888887 88888887663

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.17  E-value=5  Score=34.22  Aligned_cols=109  Identities=6%  Similarity=-0.022  Sum_probs=60.2

Q ss_pred             CCCEEEEEeCCC--eEEEEeccCceeeee-----eecccccEEEEEec-C-CCeEEEEeC--C-----CcEEEEEcCCCC
Q 035558           54 EPRRIGTSSIDT--TCTIWDIEREAVDTQ-----LIAHDKEVYDIAWG-G-VGVFASVSA--D-----GSVRVFDLRDKE  117 (253)
Q Consensus        54 ~~~~l~~~~~dg--~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~~-~-~~~l~~~~~--d-----g~i~i~d~~~~~  117 (253)
                      ++.+++.|+.++  .+.+||..+.+-...     +........++.+. + +.+++.|+.  +     ..+..||+.+..
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            678888887655  689999987652221     11111222334445 3 667777776  2     358899998876


Q ss_pred             C-----eeeeecc-CCCCCCeeEEEeeCCCCCEEEEEEeCC-------CeEEEEECCCCC
Q 035558          118 H-----STIIYES-SEPDTPLVRLGWNKQDPRYMATIIMDS-------AKVVVLDIRFPT  164 (253)
Q Consensus       118 ~-----~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~-------~~i~~~d~~~~~  164 (253)
                      .     ...+... .........+.+.  ++.+++.|+.++       ..+.+||..+..
T Consensus       580 w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          580 ATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             SSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             cccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            2     2222221 1111122223332  367777777431       238899987643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.52  E-value=3.8  Score=31.55  Aligned_cols=104  Identities=7%  Similarity=0.019  Sum_probs=56.9

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee---eee----ecccccEEEEEec-C---CCeEEEEe-C------
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD---TQL----IAHDKEVYDIAWG-G---VGVFASVS-A------  104 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~----~~~~~~v~~~~~~-~---~~~l~~~~-~------  104 (253)
                      .....++|. ++++.|+.+...|.|++++.. ++..   ..+    .........|+++ +   +..|..+. .      
T Consensus        18 ~~P~~i~~~-pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFL-PDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEEC-STTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEc-CCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            345789999 788834455678999999854 3321   111    1123456889998 4   45444442 2      


Q ss_pred             -CCcEEEEEcCCCC----Ceeeee-ccC---CCCCCeeEEEeeCCCCCEEEEEE
Q 035558          105 -DGSVRVFDLRDKE----HSTIIY-ESS---EPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus       105 -dg~i~i~d~~~~~----~~~~~~-~~~---~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                       ...|..+++....    ....+. ...   ........|+|.| ++.+.++.+
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  148 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEEC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEEC
Confidence             2356666665431    112222 111   1111346799999 776555543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.57  E-value=4.1  Score=30.26  Aligned_cols=180  Identities=13%  Similarity=0.089  Sum_probs=94.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      ..|..++.. .  ...+.-. ||.|+.|-....-.+.........|..++......++. . ||.|..|-......... 
T Consensus        24 ~~i~~ia~G-~--~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~-   96 (282)
T 3qhy_B           24 SGVDAIAGG-Y--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTV-   96 (282)
T ss_dssp             SSCCEEEEC-S--SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCC-
T ss_pred             CCCcEEEeC-C--CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCC-
Confidence            357777765 2  2333335 89999997654322211111234676776653333444 4 99999997665432111 


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                        +......|..++.-.   ...+.-. ++. |+.|-.....+ +-........|..++...+.  .++. . ||.+..|
T Consensus        97 --P~~~~~~v~~ia~G~---~hs~al~-~G~-v~~wG~n~~gq-lg~~~~~~~~i~~i~~G~~~--~~~l-~-~G~v~~w  164 (282)
T 3qhy_B           97 --PAEARSGVDAIAAGA---WASYALK-DGK-VIAWGDDSDGQ-TTVPAEAQSGVTALDGGVYT--ALAV-K-NGGVIAW  164 (282)
T ss_dssp             --CGGGSSSEEEEEEET---TEEEEEE-TTE-EEEEECCTTST-TSCCGGGGSSEEEEEECSSE--EEEE-E-TTEEEEE
T ss_pred             --CcccCCCeEEEECcC---CEEEEEe-CCe-EEEecCCCCCc-CCCCccCCCCeEEEEcccCE--EEEE-E-CCEEEEe
Confidence              111123677777653   3334444 777 99997655332 11111123457777665443  3333 3 7889888


Q ss_pred             eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      -.....+..       ........|..++.....  .++. .++.+..|
T Consensus       165 G~n~~gqlg-------~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~w  203 (282)
T 3qhy_B          165 GDNYFGQTT-------VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAW  203 (282)
T ss_dssp             ECCTTSTTS-------CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEE
T ss_pred             cCCCCCCCC-------CceecCCCeEEEEecCCE--EEEE-ECCeEEEE
Confidence            766543321       111113456666665442  3444 57777666

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.41  E-value=4.5  Score=30.44  Aligned_cols=135  Identities=9%  Similarity=0.023  Sum_probs=70.4

Q ss_pred             CCCEEEEEe--CCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC--------------CcEEEEEcCCC
Q 035558           54 EPRRIGTSS--IDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD--------------GSVRVFDLRDK  116 (253)
Q Consensus        54 ~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--------------g~i~i~d~~~~  116 (253)
                      ++..+.-..  .++.|+..+..... ...+..  ..+.  -++ +++.|+-+...              ..|+..++...
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~~~--~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~   98 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DTAM--YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH   98 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EEEE--EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Ccee--eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence            355554443  24566666665333 333332  2222  234 67777666543              35777777766


Q ss_pred             CCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE---eCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          117 EHSTIIYESSEPDTPLVRLGWNKQDPRYMATII---MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       117 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      +...+. ..     .  ...|++ +++.|+-..   .....|...++....  ...+..+..    .+++|++..+..+.
T Consensus        99 ~~~~l~-~~-----~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~  163 (302)
T 3s25_A           99 GSTVLD-PD-----P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNN  163 (302)
T ss_dssp             CCEEEE-CS-----C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEEC
T ss_pred             cceEee-cC-----C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEe
Confidence            532222 11     1  236777 777777766   223236666665432  344443332    45678885334454


Q ss_pred             cCCCcEEEEeccCCC
Q 035558          194 GDDSQALIWDLSSMG  208 (253)
Q Consensus       194 ~~dg~i~iwd~~~~~  208 (253)
                      .....|..-++....
T Consensus       164 ~g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          164 PKNGQLYRYDTASQS  178 (302)
T ss_dssp             TTTCCEEEEETTTTE
T ss_pred             CCCceEEEEECCCCC
Confidence            446677777766543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.35  E-value=1.3  Score=36.51  Aligned_cols=80  Identities=5%  Similarity=0.047  Sum_probs=51.8

Q ss_pred             ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC----CC-CeeeccCCCceeEEEEcCCCCceEEEEcCCcE
Q 035558          174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG----LD-PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKL  248 (253)
Q Consensus       174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i  248 (253)
                      ......+..+|+|...+++|-.+.++.++|++.........    .. ......-+......+|.++|..+.+.--|..|
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence            34567789999995444556689999999998633211000    00 01112235667788999999544566689999


Q ss_pred             EEEEC
Q 035558          249 QILRV  253 (253)
Q Consensus       249 ~vw~l  253 (253)
                      .-|++
T Consensus       402 vkWni  406 (638)
T 3sbq_A          402 VKWNM  406 (638)
T ss_dssp             EEEEH
T ss_pred             EEEec
Confidence            99974

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.28  E-value=7.4  Score=31.24  Aligned_cols=106  Identities=13%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeeeec------ccccEEEEEec-C---CCeEEEEeC------
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQLIA------HDKEVYDIAWG-G---VGVFASVSA------  104 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~------~~~~v~~~~~~-~---~~~l~~~~~------  104 (253)
                      .....++|. ++++++++-...+.|++++..+++.  +..+..      .......|+|+ +   +..|..+..      
T Consensus        27 ~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345699999 8888777654435798888654542  222211      24567799998 4   555554432      


Q ss_pred             -------CCcEEEEEcCCCC----Ceeeeec-c-CCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558          105 -------DGSVRVFDLRDKE----HSTIIYE-S-SEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus       105 -------dg~i~i~d~~~~~----~~~~~~~-~-~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                             ...|.-++.....    ....+.. . .........|+|.| ++.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence                   2345556554321    1122221 1 11123578899999 8877766543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.86  E-value=4.2  Score=33.70  Aligned_cols=74  Identities=16%  Similarity=0.071  Sum_probs=52.7

Q ss_pred             CeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--------C----eeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558          131 PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--------P----VVELQRHQASVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       131 ~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--------~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      ....+..+| +++++++++.-..++.++|.++...        +    +.+.. -.-.....+|.++| +...+.--|..
T Consensus       324 sPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq  400 (638)
T 3sbq_A          324 NPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ  400 (638)
T ss_dssp             SCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred             CCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence            344578899 9999998887666699999984210        0    11112 22345678999998 56677779999


Q ss_pred             EEEEeccCC
Q 035558          199 ALIWDLSSM  207 (253)
Q Consensus       199 i~iwd~~~~  207 (253)
                      |.-|++...
T Consensus       401 vvkWni~~a  409 (638)
T 3sbq_A          401 VVKWNMEEA  409 (638)
T ss_dssp             EEEEEHHHH
T ss_pred             EEEEeccHH
Confidence            999999763

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.55  E-value=6.1  Score=29.35  Aligned_cols=180  Identities=13%  Similarity=0.121  Sum_probs=95.0

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      ..|..++.. . ...++. . ||.|+.|-....-.+.....-...|..++.. ....+.-. ||.|..|-..........
T Consensus        63 ~~i~~ia~G-~-~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G-~~hs~al~-~G~v~~wG~n~~gqlg~~  136 (282)
T 3qhy_B           63 SGVDAIAAG-N-YHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAG-AWASYALK-DGKVIAWGDDSDGQTTVP  136 (282)
T ss_dssp             SCCCEEEEC-S-SEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEE-TTEEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred             CCEEEEEeC-C-CEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECc-CCEEEEEe-CCeEEEecCCCCCcCCCC
Confidence            467777765 2 233333 5 8999999765432221111113467777665 23333334 999999977653321111


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                         ......|..++.-.   ...+.-. ++. |..|-.....+ +..-..-...|..++.....  .++.  .||.+..|
T Consensus       137 ---~~~~~~i~~i~~G~---~~~~~l~-~G~-v~~wG~n~~gq-lg~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~w  203 (282)
T 3qhy_B          137 ---AEAQSGVTALDGGV---YTALAVK-NGG-VIAWGDNYFGQ-TTVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAW  203 (282)
T ss_dssp             ---GGGGSSEEEEEECS---SEEEEEE-TTE-EEEEECCTTST-TSCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEE
T ss_pred             ---ccCCCCeEEEEccc---CEEEEEE-CCE-EEEecCCCCCC-CCCceecCCCeEEEEecCCE--EEEE--ECCeEEEE
Confidence               11122566666532   2333333 676 99997655332 11111113467777766543  4444  59999999


Q ss_pred             eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      -.....+.-       ........|..|+-...  ..++.. ++.+..|
T Consensus       204 G~n~~gqlg-------~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~w  242 (282)
T 3qhy_B          204 GDNRYKQTT-------VPTEALSGVSAIASGEW--YSLALK-NGKVIAW  242 (282)
T ss_dssp             ECCTTSTTC-------CCGGGGSSCCEEEECSS--CEEEEE-TTEEEEE
T ss_pred             ECCCCCCCC-------CCcccCCCceEEEcCCC--EEEEEE-CCEEEEe
Confidence            766543322       11112245667766554  344555 7777776

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.18  E-value=9  Score=29.79  Aligned_cols=150  Identities=11%  Similarity=0.023  Sum_probs=75.6

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCC----eEEEEeccCce---eeee---eec--------ccccEEEEEec--C-CCeEEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDT----TCTIWDIEREA---VDTQ---LIA--------HDKEVYDIAWG--G-VGVFAS  101 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~---~~~~---~~~--------~~~~v~~~~~~--~-~~~l~~  101 (253)
                      ..|.+|++.|.+...+..++..|    .|...+ ..++   .+..   +..        ....|.++++.  + ...+..
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            46899999954555566665555    444332 2222   1111   110        11257778886  3 667777


Q ss_pred             EeCCCcEEEEEcCCCCCeeeeecc----------------CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC
Q 035558          102 VSADGSVRVFDLRDKEHSTIIYES----------------SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL  165 (253)
Q Consensus       102 ~~~dg~i~i~d~~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  165 (253)
                      +...+.|...+= .++....+...                ......+.+|.++|.+...+.++...+. |...+-.. + 
T Consensus       134 g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~gg-l~~s~DgG-~-  209 (394)
T 3b7f_A          134 GTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGG-VFESTDAG-T-  209 (394)
T ss_dssp             EEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBE-EEEESSTT-S-
T ss_pred             EecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCC-EEEECCCC-C-
Confidence            666665544422 22222222110                0112357889998855566666666655 54443221 1 


Q ss_pred             Ceeeecc-----c--------ccceeEEEEecCCCCeEEEecCCC
Q 035558          166 PVVELQR-----H--------QASVNAIAWAPHSSCHICTAGDDS  197 (253)
Q Consensus       166 ~~~~~~~-----~--------~~~i~~~~~~~~~~~~l~~~~~dg  197 (253)
                      .-..+..     +        ...+.+++++|..+..|+.+...+
T Consensus       210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            1111110     0        134889999997434666666544

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.88  E-value=11  Score=29.49  Aligned_cols=172  Identities=9%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             eEEEEeccCc--eeeeeeec------ccccEEEEEec-C-------CCeEEEE-eCCCcEEEEEcCCCCCeeeeeccCCC
Q 035558           66 TCTIWDIERE--AVDTQLIA------HDKEVYDIAWG-G-------VGVFASV-SADGSVRVFDLRDKEHSTIIYESSEP  128 (253)
Q Consensus        66 ~i~vwd~~~~--~~~~~~~~------~~~~v~~~~~~-~-------~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~  128 (253)
                      .|.+||+.+.  +.++.+.-      ....+.++++. .       +.++..+ +..+-|.++|+.+++..+........
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            6889999999  87776642      23457777776 2       2333333 34677999999988755544211111


Q ss_pred             ---------------CCCeeEEEeeCCC----CCEEEEEEeCCCeEEEEE---CCCCC--CCeeeecccc--cceeEEEE
Q 035558          129 ---------------DTPLVRLGWNKQD----PRYMATIIMDSAKVVVLD---IRFPT--LPVVELQRHQ--ASVNAIAW  182 (253)
Q Consensus       129 ---------------~~~i~~~~~~~~~----~~~l~~~~~~~~~i~~~d---~~~~~--~~~~~~~~~~--~~i~~~~~  182 (253)
                                     ...+..|+++| +    ++.|......+..+.-..   +++..  ..++.+....  ..-..++.
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp-~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGD-RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECC-CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecC-CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence                           13678888988 4    667777666653233333   22221  1122222111  22335667


Q ss_pred             e-cCCCCeEEEecCCCcEEEEeccC-CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          183 A-PHSSCHICTAGDDSQALIWDLSS-MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       183 ~-~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      . .+| .++++--..+.|..|+..+ .-.+.  ..........-..+..+.+.+++..++.
T Consensus       283 D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~--n~~~l~~d~~l~~pd~~~i~~~g~Lwv~  340 (381)
T 3q6k_A          283 DPKTK-VIFFAEANTKQVSCWNTQKMPLRMK--NTDVVYTSSRFVFGTDISVDSKGGLWFM  340 (381)
T ss_dssp             CTTTC-EEEEEESSSSEEEEEETTSCSBCGG--GEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred             eCCCC-eEEEEeccCCeEEEEeCCCCccccC--ceEEEEECCCccccCeEEECCCCeEEEE
Confidence            5 556 5777778899999999876 22111  0000111112334677777777754443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.10  E-value=14  Score=29.85  Aligned_cols=109  Identities=9%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             ccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeecc---C------CCCCCeeEEEeeCC---CCCEEEEEEeC
Q 035558           86 KEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYES---S------EPDTPLVRLGWNKQ---DPRYMATIIMD  151 (253)
Q Consensus        86 ~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~------~~~~~i~~~~~~~~---~~~~l~~~~~~  151 (253)
                      ...+.|+|. ++. .++++...|.|++++.........+...   .      ..+.....|+|+|.   ++.+.++-+..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            356789999 775 4555678899999975432111111110   0      12457889999983   23444433321


Q ss_pred             C-----------CeEEEEECCCC--C-------CCeeeec--ccccceeEEEEecCCCCeEEEecC
Q 035558          152 S-----------AKVVVLDIRFP--T-------LPVVELQ--RHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       152 ~-----------~~i~~~d~~~~--~-------~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      .           ..|.-|.+...  .       +.+..+.  .....-..|+|.||| ++.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCC
Confidence            1           12555665421  0       1122221  112345789999999 45555443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=82.64  E-value=13  Score=27.86  Aligned_cols=138  Identities=9%  Similarity=-0.012  Sum_probs=69.3

Q ss_pred             ecCCCCCEEEEEeCC--------------CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe--CC--CcEEE
Q 035558           50 WNEAEPRRIGTSSID--------------TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS--AD--GSVRV  110 (253)
Q Consensus        50 ~~~~~~~~l~~~~~d--------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~d--g~i~i  110 (253)
                      ++ +++++|+-....              ..|+..++...+... +..  ...  ..|+ +++.|+-..  .+  ..|..
T Consensus        60 i~-~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           60 IN-ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DPC--IYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EE-ECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SCE--EEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             EE-EcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CCc--cEEEEeCCEEEEEeecCCCCceEEE
Confidence            45 567766655432              367777777654322 321  122  2455 677777665  33  34555


Q ss_pred             EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeE
Q 035558          111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHI  190 (253)
Q Consensus       111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  190 (253)
                      -++..... ..+...     .+  .+++| +++.|+-.+.....|...++.....  ..+..  +... ..+.|++. +|
T Consensus       134 ~~~dGs~~-~~lt~~-----~~--~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~--~~l~~--~~~~-~~~~P~g~-~i  198 (302)
T 3s25_A          134 IRIDGEEK-KKIKNH-----YL--FTCNT-SDRYFYYNNPKNGQLYRYDTASQSE--ALFYD--CNCY-KPVVLDDT-NV  198 (302)
T ss_dssp             EETTSCCC-EEEESS-----CC--CCSEE-ETTEEEEECTTTCCEEEEETTTTEE--EEEEC--SCEE-EEEEEETT-EE
T ss_pred             EECCCCCe-EEEeCC-----Cc--eEeeE-ECCEEEEEeCCCceEEEEECCCCCE--EEEeC--CCcc-ceeeecCC-EE
Confidence            55554432 222221     11  34666 6666665554333388888765432  23321  2222 34668884 55


Q ss_pred             EEecC-C-CcEEEEeccCCC
Q 035558          191 CTAGD-D-SQALIWDLSSMG  208 (253)
Q Consensus       191 ~~~~~-d-g~i~iwd~~~~~  208 (253)
                      +-... + ..|..-++....
T Consensus       199 y~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          199 YYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEEEGGGTTEEEEECSSSCC
T ss_pred             EEEEcCCCcEEEEEECCCCC
Confidence            54433 3 345555555433

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=81.68  E-value=26  Score=30.46  Aligned_cols=150  Identities=9%  Similarity=-0.026  Sum_probs=77.5

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec-------ccccEEEEEec--CCCeEEEEeCCCc----EE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA-------HDKEVYDIAWG--GVGVFASVSADGS----VR  109 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~--~~~~l~~~~~dg~----i~  109 (253)
                      ..|.+|+++|.+...++.++..+.|...+=. ++.=..+..       ....+.+|++.  +.+.++.+..+..    -.
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEecCC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            5799999997677778888877776554422 321111211       12468899987  4444544432211    23


Q ss_pred             EEEc-CCCCCeeeeeccCC------CCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec------ccccc
Q 035558          110 VFDL-RDKEHSTIIYESSE------PDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ------RHQAS  176 (253)
Q Consensus       110 i~d~-~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~  176 (253)
                      ||.- ..++....+.....      ....+..++++|.+.+.+.++...+. |  |-.....+.-..+.      .....
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g-l--~~S~DgG~TW~~~~~~~~~~~~~~~  170 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG-I--WKSSDRAKTWTNVTSIPDAFTNGIG  170 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC-E--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC-E--EEECCCCcccCCCccCccccCCCCC
Confidence            3333 33333333321111      11135678898866667777664444 3  32222221111111      11245


Q ss_pred             eeEEEEecCCCCeEEEecCC
Q 035558          177 VNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       177 i~~~~~~~~~~~~l~~~~~d  196 (253)
                      +..+.++|..+..++.+..+
T Consensus       171 ~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          171 YTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEEECTTSTTCEEEEESS
T ss_pred             eEEEEECCCCCCEEEEEEcC
Confidence            78899998654466666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-11
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 6/164 (3%)

Query: 41  YCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VF 99
                        + R   + + D +  +WD+           H+ ++  I +   G  F
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241

Query: 100 ASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD 159
           A+ S D + R+FD    +   + Y        +  + ++K   R +     D     V D
Sbjct: 242 ATGSDDATCRLFD-LRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDF-NCNVWD 298

Query: 160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
                     L  H   V+ +         + T   DS   IW+
Sbjct: 299 ALKAD-RAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 64  DTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEHSTII 122
           DTTC +WDIE     T    H  +V  ++      +F S + D S +++D+R+       
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM---CR 219

Query: 123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAW 182
              +  ++ +  + +   +    AT   D+   +        L           + ++++
Sbjct: 220 QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 183 APHSSCHICTAGDDSQALIWDLSSM 207
           +      +    DD    +WD    
Sbjct: 279 SKSGR-LLLAGYDDFNCNVWDALKA 302

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 3e-10
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 23/188 (12%)

Query: 41  YCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER-------EAVDTQLIAHDKEVYDIAW 93
               +T+   +  + + I   S+D    +WD E        ++ +     H   VY + +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262

Query: 94  GGVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNK--------QDPRY 144
              G    S S D SV++++L++  + +     +     +  +G           Q+  Y
Sbjct: 263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322

Query: 145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCH-----ICTAGDDSQA 199
           + +   D   V+  D +    P++ LQ H+ SV ++A A  SS         T   D +A
Sbjct: 323 ILSGSKDR-GVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

Query: 200 LIWDLSSM 207
            IW    +
Sbjct: 381 RIWKYKKI 388

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 27/192 (14%), Positives = 64/192 (33%), Gaps = 14/192 (7%)

Query: 23  EDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI 82
            D  V++             G        + +   + + S+DT+  +WD+E       L 
Sbjct: 155 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 214

Query: 83  AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP 142
            H      +      +  S +AD +V+++D++  +    +     P+     +   + + 
Sbjct: 215 GHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQC---LQTLQGPNKHQSAVTCLQFNK 270

Query: 143 RYMATIIMDSAKVVVLDIR----FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDD-- 196
            ++ T   D   V + D++       L  +E       V  I  +  +         +  
Sbjct: 271 NFVITSSDDG-TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGT 328

Query: 197 --SQALIWDLSS 206
             ++ L+ D   
Sbjct: 329 EETKLLVLDFDV 340

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-08
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 47  SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADG 106
           + +  + + + I ++S D T  +W+         L  H + +  + +    +  S S+D 
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDN 198

Query: 107 SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI-IMDSAKVVVLDIRFPTL 165
           ++R++D+       ++    E    +           Y   I + D    +       TL
Sbjct: 199 TIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258

Query: 166 PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
            +  L  H   V  + +       I ++  D   LIWD
Sbjct: 259 CLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 24  DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ--- 80
           D  + L  +  G       G          + +RI + + D    +WD+           
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 81  ------LIAHDKEVYDIAWGGVGVFASVSADGSVRVFD 112
                 L+ H   V+ + +       S S D ++ ++D
Sbjct: 257 TLCLRTLVEHSGRVFRLQFDE-FQIVSSSHDDTILIWD 293

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 50/159 (31%)

Query: 46  TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSA 104
           +    +      + + S D T  +WD+        L+ HD  V  + +   G    S + 
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267

Query: 105 DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT 164
           D ++RV+D ++K                                                
Sbjct: 268 DKTLRVWDYKNKR----------------------------------------------- 280

Query: 165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD 203
             +  L  H+  V ++ +   +  ++ T   D    +W+
Sbjct: 281 -CMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 4e-06
 Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 20/177 (11%)

Query: 48  FDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADG 106
                     I ++S D T  +W+++          H + V  +     G + AS S D 
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165

Query: 107 SVRVFDLRDKEHSTIIYESSEPDTPL----------------VRLGWNKQDPRYMATIIM 150
           +VRV+ +  KE    + E       +                     + +   ++ +   
Sbjct: 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM 207
           D   + + D+      ++ L  H   V  + +       I +  DD    +WD  + 
Sbjct: 226 DK-TIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNK 279

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 9e-07
 Identities = 16/166 (9%), Positives = 49/166 (29%), Gaps = 5/166 (3%)

Query: 44  PLTSFDWNEAEPRRIGTSSIDTTCTIWDIE--REAVDTQLIAHDKEVYDIAWGGVG-VFA 100
           P++   WN  +  +I     +    I++    +     +L  H+ +V  + W        
Sbjct: 9   PISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 101 SVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDI 160
           +   D +  V+ L+ +     +                 +    + +     +       
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127

Query: 161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS 206
               +     +  +++V ++     +S  +     D +  I+    
Sbjct: 128 NDWWVCKHIKKPIRSTVLSL-DWHPNSVLLAAGSCDFKCRIFSAYI 172

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 7e-05
 Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 11/178 (6%)

Query: 39  SEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGV 98
           S  CG +    ++    R    S   T C + D +++     L +    +  + +     
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVC-LADADKKMAVATLASETLPLLAVTFITESS 256

Query: 99  FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL 158
             +   D    +F               +      + G   ++          S      
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316

Query: 159 DIRFPTLPVVELQRHQASVNAIAWAP---HSSCHICTAGDDSQALIWDLSSMGQPVEG 213
                +L       H+ SV+ I+            CT G D    IWD+ S+   ++ 
Sbjct: 317 GAGLDSL-------HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 367

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 3e-06
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 60  TSSIDTTCTIWDIER-EAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFD 112
           T S+DT   I+ ++R   +   L AH   V ++ W       S  AD  ++ ++
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 140 QDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQA 199
            +   +AT  +D+  + +  ++ P   +  L  H+  VN + W   S   + ++G D+  
Sbjct: 225 IEEDLVATGSLDT-NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADACI 281

Query: 200 LIWD 203
             W+
Sbjct: 282 KRWN 285

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 48  FDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYD----IAWGGVGVFASVS 103
           F  +  + ++  T   D T  +WD+       +     +++ +    +   G G   S+S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 104 ADGSVRVFDL 113
            DG++  ++L
Sbjct: 316 LDGTLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 2/59 (3%)

Query: 56  RRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSADGSVRVFDL 113
           +   ++  D     W     A           V             + S D    V+++
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGAS-IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL 200
             ++  +   D+  +       P    +   +  +SV +   +     +I T   D +A 
Sbjct: 276 CGKWFVSTGKDN-LLNAWRT--PYGASIFQSKESSSVLSCDISVDDK-YIVTGSGDKKAT 331

Query: 201 IWDL 204
           ++++
Sbjct: 332 VYEV 335

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 56  RRIGTSSIDTTCTIWDIE-REAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDL 113
             I  S  +    I+++   + V   ++    +++ + + G  + A+V  DG   +  L
Sbjct: 294 DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 45  LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVS 103
           +T   +       + T + D    ++D   +    QL  HD  V+ + +   G+  S S
Sbjct: 16  ITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS 71

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.001
 Identities = 9/76 (11%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 41  YCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIER---EAVDTQLIAHDKEVYDIAWGGVG 97
           +     +      +  R+ T S+D +  +W++ +     +  +       V  + W    
Sbjct: 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 281

Query: 98  VFASVSADGSVRVFDL 113
              S   D +++ +++
Sbjct: 282 TIVSAGQDSNIKFWNV 297

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 6/74 (8%), Positives = 21/74 (28%), Gaps = 5/74 (6%)

Query: 170 LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQ 229
            Q  +  ++ I   P  S  +     D    ++      + V+     + +      +  
Sbjct: 7   EQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----LLQSLRYKHPLLC 61

Query: 230 LQWSSSQPDWVAIA 243
             +  +    + + 
Sbjct: 62  CNFIDNTDLQIYVG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 83  AHDKEVYDIAWGGVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQD 141
           A    + DI       +    S DGS+ V+    +  +  + +S     PL+   +    
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 142 PRYMA 146
              + 
Sbjct: 69  DLQIY 73

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 42/241 (17%)

Query: 7   LLATSSD--FLRVWRISDEDRRVELKS-----LLNGNKNSEYCGPLTSFDWNEAEPRRIG 59
           L+AT+S    L  +RI+ ED   ++       L +  K   +         +     R+ 
Sbjct: 81  LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 140

Query: 60  TSSIDTTCTIWDIEREAVDTQ------------------LIAHDKEVYDIAWGGVGVFAS 101
            + +  T  IW     A ++                    +   +    +     G+ A+
Sbjct: 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIAT 200

Query: 102 VSADGSVRVFDLRDKEHSTIIY--ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV--- 156
              +G+V++ +L             S   ++  +R          +A     ++      
Sbjct: 201 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260

Query: 157 -----------VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLS 205
                      +      +   +    H + V ++++          AG D +   WD+ 
Sbjct: 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-AGWDGKLRFWDVK 319

Query: 206 S 206
           +
Sbjct: 320 T 320

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 22/148 (14%)

Query: 83  AHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH--------STIIYESSEPDTPLVR 134
           AHD +++ ++        S S DG ++V+D +  ++        S  +++S      +++
Sbjct: 12  AHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 135 LGWNKQDPRYMATIIMDSAKVVVLDIR---------FPTLPVVELQRHQASVNAIAWAPH 185
                     +      S  ++   I          F  L +++    + S  A+ W   
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 186 SSC----HICTAGDDSQALIWDLSSMGQ 209
           +       +          IW       
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFAD 158

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 56  RRIGTSSIDTTCTIWDIEREAVDTQLIAHDK---EVYDIAWGGVGVFASVSADGSVRVFD 112
            +I ++S D T  IW++    V+  +    +   +   I W       S+SA+G +   +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-QALVSISANGFINFVN 309

Query: 113 L 113
            
Sbjct: 310 P 310

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 9/83 (10%), Positives = 20/83 (24%), Gaps = 5/83 (6%)

Query: 47  SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVG-VFASVSAD 105
           S   +         +        +D++      ++      + D+              D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDD 335

Query: 106 GSVRVFDLRDKEHSTIIYESSEP 128
           G +  F L   E    +     P
Sbjct: 336 GKIYTFPLEKPEDERTVETDKRP 358

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.35
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.34
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.26
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.23
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.22
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.14
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.09
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.05
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.04
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.02
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.0
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.66
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.58
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.54
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.35
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.21
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.14
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.59
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.3
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.08
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.07
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.86
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.83
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.72
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.57
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.48
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.97
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.9
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.81
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.76
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.59
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.33
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.18
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.07
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.49
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	91.71
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.65
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.99
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.84
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.66
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.65
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.17
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.05
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	82.77

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-40  Score=252.18  Aligned_cols=234  Identities=12%  Similarity=0.134  Sum_probs=196.3

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceee--e
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVD--T   79 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~   79 (253)
                      ++++.|+.+++ .|.+|++++.    .....+.+|.     ..|++++|+ |++++|++|+.||+|++||+..++..  .
T Consensus        27 ~~g~~l~~~~~~~v~i~~~~~~----~~~~~~~~H~-----~~v~~~~~s-p~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          27 PAGDKIQYCNGTSVYTVPVGSL----TDTEIYTEHS-----HQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             TTSSEEEEEETTEEEEEETTCS----SCCEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CCCCEEEEEeCCEEEEEECCCC----ceeEEEcCCC-----CCEEEEEEe-CCCCeEeccccCceEeeeeeecccccccc
Confidence            35556666666 9999999886    7778889998     899999999 89999999999999999999887643  4


Q ss_pred             eeecccccEEEEEec-CCCeEEEEeC--CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC-EEEEEEeCCCeE
Q 035558           80 QLIAHDKEVYDIAWG-GVGVFASVSA--DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR-YMATIIMDSAKV  155 (253)
Q Consensus        80 ~~~~~~~~v~~~~~~-~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~i  155 (253)
                      .+..|..+|.+++|+ +++++++++.  +..+++|++++.+..   .....|...|.+++|+| ++. .+++|+.|+. |
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~---~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~-i  171 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN---GNLTGQARAMNSVDFKP-SRPFRIISGSDDNT-V  171 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC---BCCCCCSSCEEEEEECS-SSSCEEEEEETTSC-E
T ss_pred             ccccccCcccccccccccccccccccccccccccccccccccc---ccccccccccccccccc-cceeeecccccccc-c
Confidence            577899999999999 9999999886  466999999988743   33456677999999999 555 5788888888 9


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      ++||+++.+ ....+..|...|++++|+|++ ++|++++.|+.|++||+.................+|...|++++|+|+
T Consensus       172 ~i~d~~~~~-~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~  249 (311)
T d1nr0a1         172 AIFEGPPFK-FKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD  249 (311)
T ss_dssp             EEEETTTBE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             ccccccccc-cccccccccccccccccCccc-cccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence            999999865 477888899999999999999 699999999999999998876433222223345678999999999999


Q ss_pred             CCceEEEEcCCcEEEEEC
Q 035558          236 QPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw~l  253 (253)
                      ++++++++.|+.|+||++
T Consensus       250 ~~~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         250 GTKIASASADKTIKIWNV  267 (311)
T ss_dssp             SSEEEEEETTSEEEEEET
T ss_pred             CCEEEEEeCCCeEEEEEC
Confidence            999999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=241.11  Aligned_cols=226  Identities=16%  Similarity=0.226  Sum_probs=196.2

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      +++++|++++ + .|++||+...  ..+....+..|.     ..+.+++|+ +++.++++++.|+.|++|++.+++....
T Consensus       107 ~dg~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~-----~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         107 PDGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSA-----PACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC----EEEEEEECSS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCCCEEEEeeccccccccccccc--cccccccccccc-----ccccccccc-cccccccccccccccccccccccccccc
Confidence            3567777776 5 9999998763  235566777888     889999999 8999999999999999999999998888


Q ss_pred             eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           81 LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        81 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ...|...|.+++|+ ++..+++++.|+.+++||+++++.....    .+...|.+++|+| +++++++++.++. +++||
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~----~~~~~i~~l~~~~-~~~~l~~~~~d~~-i~i~d  252 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCP-TGEWLAVGMESSN-VEVLH  252 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeccc----ccccceEEEEEcc-cccccceeccccc-ccccc
Confidence            88999999999999 9999999999999999999988743333    3455899999999 8999999999998 99999


Q ss_pred             CCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          160 IRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                      ++...  ......|...|++++|+|++ ++|++++.||.|++||+.+++.        .....|...|.+++|+|++++|
T Consensus       253 ~~~~~--~~~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~--------~~~~~~~~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         253 VNKPD--KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS--------IFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             TTSSC--EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--------EEEEECSSCEEEEEECTTSCEE
T ss_pred             ccccc--cccccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCE--------EEEccCCCCEEEEEEeCCCCEE
Confidence            98765  45667799999999999999 6999999999999999988763        2455688999999999999999


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.|+.|+||+|
T Consensus       322 ~t~s~D~~I~vWdl  335 (337)
T d1gxra_         322 VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEEeCCCeEEEEEE
Confidence            99999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-37  Score=242.76  Aligned_cols=231  Identities=12%  Similarity=0.189  Sum_probs=193.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--e
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--D   78 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~   78 (253)
                      +++.+||+++ + .|++|++..+  .+.....+++|.     .+|++++|+ |++++|++|+.|++|++||+++++.  .
T Consensus        17 ~dg~~la~~~~~~~i~iw~~~~~--~~~~~~~l~gH~-----~~V~~l~fs-p~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_          17 KDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHN-----GQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETT--EEEEEEEEECCS-----SCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCC--CEEEEEEecCCC-----CCEEEEEEC-CCCCEEEEEECCCeEEEEeecccccccc
Confidence            4778888877 4 8999999873  345678889999     899999999 8999999999999999999987764  3


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee-eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII-YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ..+.+|...|++++|+ +++.|++++.|+.+++|++......... .....+...|.+++|+| ++.+|++++.|+. |+
T Consensus        89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~-v~  166 (371)
T d1k8kc_          89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFK-CR  166 (371)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSC-EE
T ss_pred             cccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcE-EE
Confidence            4456788999999999 9999999999999999999877654332 33445677999999999 9999999999999 99


Q ss_pred             EEECCCCC-----------------CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee
Q 035558          157 VLDIRFPT-----------------LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL  219 (253)
Q Consensus       157 ~~d~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  219 (253)
                      +||.....                 ..+.....|...|.+++|+|++ ++|++++.|+.|++||+..+....       .
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~-------~  238 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVA-------T  238 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEE-------E
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeeccccee-------e
Confidence            99986532                 1234556788899999999999 699999999999999998876443       6


Q ss_pred             eccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          220 AYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       220 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ...|..+|.+++|+|+++ +++++.|+.+++|.
T Consensus       239 ~~~~~~~v~s~~fs~d~~-~la~g~d~~~~~~~  270 (371)
T d1k8kc_         239 LASETLPLLAVTFITESS-LVAAGHDCFPVLFT  270 (371)
T ss_dssp             EECSSCCEEEEEEEETTE-EEEEETTSSCEEEE
T ss_pred             eecccccceeeeecCCCC-EEEEEcCCceEEEE
Confidence            678899999999999986 77788888887774

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.2e-37  Score=236.30  Aligned_cols=227  Identities=16%  Similarity=0.258  Sum_probs=184.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC--CCeEEEEeccCceee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI--DTTCTIWDIEREAVD   78 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~   78 (253)
                      +++++||+|+ | +|++||+...  .......+.+|.     .+|.+++|+ +++++|++++.  +..+++|++++++..
T Consensus        68 p~g~~latg~~dg~i~iwd~~~~--~~~~~~~~~~~~-----~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~~~  139 (311)
T d1nr0a1          68 PSGYYCASGDVHGNVRIWDTTQT--THILKTTIPVFS-----GPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSN  139 (311)
T ss_dssp             TTSSEEEEEETTSEEEEEESSST--TCCEEEEEECSS-----SCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBC
T ss_pred             CCCCeEeccccCceEeeeeeecc--cccccccccccc-----Ccccccccc-cccccccccccccccccccccccccccc
Confidence            3688888887 5 9999999885  122345678888     899999999 88999998875  456999999999999


Q ss_pred             eeeecccccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ..+.+|...|++++|+ +++ .|++|+.||.|++||+++.+.   ......+..+|.++.|+| +++++++++.|+. |+
T Consensus       140 ~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~---~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~-v~  214 (311)
T d1nr0a1         140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF---KSTFGEHTKFVHSVRYNP-DGSLFASTGGDGT-IV  214 (311)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE---EEEECCCSSCEEEEEECT-TSSEEEEEETTSC-EE
T ss_pred             ccccccccccccccccccceeeeccccccccccccccccccc---ccccccccccccccccCc-ccccccccccccc-cc
Confidence            9999999999999999 666 588999999999999998763   334456677999999999 9999999999999 99


Q ss_pred             EEECCCCCCCeee-------ecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC---CCc
Q 035558          157 VLDIRFPTLPVVE-------LQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA---GAE  226 (253)
Q Consensus       157 ~~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~  226 (253)
                      +||+++... ...       ..+|...|++++|+|++ ++|++|+.||.|+|||+++++...       .+..|   ...
T Consensus       215 ~~d~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~~~-------~l~~~~~~~~~  285 (311)
T d1nr0a1         215 LYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEK-------TIPVGTRIEDQ  285 (311)
T ss_dssp             EEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-------EEECCSSGGGC
T ss_pred             ccccccccc-cccccccccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCcEEE-------EEECCCCccce
Confidence            999987542 332       34688999999999999 699999999999999998876332       33333   234


Q ss_pred             eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          227 IEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +.++.|++  ..+++++.||.|++|++
T Consensus       286 ~~~~~~~~--~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         286 QLGIIWTK--QALVSISANGFINFVNP  310 (311)
T ss_dssp             EEEEEECS--SCEEEEETTCCEEEEET
T ss_pred             EEEEEecC--CEEEEEECCCEEEEEeC
Confidence            55666654  46999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-36  Score=232.10  Aligned_cols=228  Identities=17%  Similarity=0.276  Sum_probs=191.5

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC----------------------------
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE----------------------------   52 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------   52 (253)
                      +++++|++|+ | +|+|||+.++    +...++++|.     ..|.+++|+|                            
T Consensus        27 p~~~~l~s~s~Dg~i~iWd~~~~----~~~~~~~~h~-----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (317)
T d1vyhc1          27 PVFSVMVSASEDATIKVWDYETG----DFERTLKGHT-----DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM   97 (317)
T ss_dssp             SSSSEEEEEESSSCEEEEETTTC----CCCEEECCCS-----SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCC----CEEEEEeCCC-----CcEEEEeeeccccccccccccccccccccccccccccc
Confidence            3567888887 5 9999999886    6666676666     4555554441                            


Q ss_pred             -------------CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           53 -------------AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        53 -------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                                   ++++.+++++.|+.+++||+++++....+.+|...+.+++|+ ++.+|++++.|+.|++|++++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~  177 (317)
T d1vyhc1          98 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC  177 (317)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee
Confidence                         455678889999999999999999999999999999999999 999999999999999999998874


Q ss_pred             eeeeeccCCCCCCeeEEEeeCC-------------------CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeE
Q 035558          119 STIIYESSEPDTPLVRLGWNKQ-------------------DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNA  179 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~-------------------~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~  179 (253)
                      ..   ....+...+.+++|+|.                   .+.++++++.|+. |++||+++.. ++..+.+|...|.+
T Consensus       178 ~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~-~~~~~~~~~~~v~~  252 (317)
T d1vyhc1         178 KA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGM-CLMTLVGHDNWVRG  252 (317)
T ss_dssp             EE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTE-EEEEEECCSSCEEE
T ss_pred             eE---EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECCCCc-EEEEEeCCCCCEEE
Confidence            33   33455567888888773                   2456888888888 9999999865 58889999999999


Q ss_pred             EEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          180 IAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       180 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      ++|+|++ ++|++|+.||.|++||+++++..       ..+.+|..+|++++|+|++++|++++.|+.|+||+
T Consensus       253 ~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         253 VLFHSGG-KFILSCADDKTLRVWDYKNKRCM-------KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSS-SCEEEEETTTEEEEECCTTSCCC-------EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEECCCC-CEEEEEECCCeEEEEECCCCcEE-------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999 69999999999999999987644       36778999999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=235.28  Aligned_cols=229  Identities=14%  Similarity=0.180  Sum_probs=192.5

Q ss_pred             CCCceEEeecC-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc--eee
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE--AVD   78 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~   78 (253)
                      +++.+|++|++ .|+|||+...... ........+|.     ..|.+++|+ +++++|++|+.||.|++||+...  +..
T Consensus        61 ~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~-----~~I~~v~~s-~dg~~l~s~~~dg~i~iwd~~~~~~~~~  134 (337)
T d1gxra_          61 NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRD-----NYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRIK  134 (337)
T ss_dssp             SSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTT-----SBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred             CCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCC-----CcEEEEEEc-CCCCEEEEeecccccccccccccccccc
Confidence            47789999998 9999999875111 11222344676     899999999 89999999999999999998744  456


Q ss_pred             eeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      ..+..|...+..++|+ ++.++++++.|+.|++||+++.+.   ......+...+.+++|++ ++..+++++.++. +++
T Consensus       135 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~---~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~-v~i  209 (337)
T d1gxra_         135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL---VRQFQGHTDGASCIDISN-DGTKLWTGGLDNT-VRS  209 (337)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECT-TSSEEEEEETTSE-EEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc-ccccccccccccc-ccc
Confidence            6778899999999999 999999999999999999998763   333345667899999999 8999999999998 999


Q ss_pred             EECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCC
Q 035558          158 LDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQP  237 (253)
Q Consensus       158 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (253)
                      ||+++.+. +..+ .|...|.+++|+|++ .+|++++.|+.+++||++....        .....|...|++++|+|+++
T Consensus       210 ~d~~~~~~-~~~~-~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         210 WDLREGRQ-LQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK--------YQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             EETTTTEE-EEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE--------EEECCCSSCEEEEEECTTSS
T ss_pred             ccccccee-eccc-ccccceEEEEEcccc-cccceecccccccccccccccc--------ccccccccccceEEECCCCC
Confidence            99987652 4443 478899999999999 6999999999999999987653        35678899999999999999


Q ss_pred             ceEEEEcCCcEEEEEC
Q 035558          238 DWVAIAFSTKLQILRV  253 (253)
Q Consensus       238 ~~~~~~~~~~i~vw~l  253 (253)
                      .+++++.|+.|++|++
T Consensus       279 ~l~s~s~Dg~i~iwd~  294 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             EEEEEETTSEEEEEET
T ss_pred             EEEEEeCCCeEEEEEC
Confidence            9999999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-37  Score=240.21  Aligned_cols=236  Identities=18%  Similarity=0.237  Sum_probs=182.1

Q ss_pred             CCCceEEeecC-cEEEEEccCCccccceeeeecCCCC-------------ccccCCeeEEEecCCCCCEEEEEeCCCeEE
Q 035558            3 QKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKN-------------SEYCGPLTSFDWNEAEPRRIGTSSIDTTCT   68 (253)
Q Consensus         3 ~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   68 (253)
                      ++|++||+|+| .|+||++.++    +....+..+..             ..+...|++++|+ +++++|++|+.||.|+
T Consensus        72 ~dg~~lasg~d~~i~iW~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~~~dg~v~  146 (388)
T d1erja_          72 NDGEYLATGCNKTTQVYRVSDG----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIR  146 (388)
T ss_dssp             TTSSEEEEECBSCEEEEETTTC----CEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred             CCCCEEEEEeCCeEEEEEeccc----ceEeeecccccccccccccccccccCCCCCEEEEEEC-CCCCcceecccccccc
Confidence            36789999998 9999999886    44444433221             1122679999999 8999999999999999


Q ss_pred             EEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCC-------------------------------
Q 035558           69 IWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDK-------------------------------  116 (253)
Q Consensus        69 vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------------------------------  116 (253)
                      +||...++.+..+.+|...|.+++++ ++..+++++.++.+++||.++.                               
T Consensus       147 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  226 (388)
T d1erja_         147 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD  226 (388)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCC
Confidence            99999999888888888888888887 7666666666666666666543                               


Q ss_pred             -----------CCeeeee----ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----------Ceeee
Q 035558          117 -----------EHSTIIY----ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----------PVVEL  170 (253)
Q Consensus       117 -----------~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----------~~~~~  170 (253)
                                 .....+.    ....|...|.+++|+| ++++|++++.|+. |++||+++...           .....
T Consensus       227 ~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~  304 (388)
T d1erja_         227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPNSGTCEVTY  304 (388)
T ss_dssp             SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSE-EEEEEC---------------CEEEEE
T ss_pred             CeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCc-EEEEeccCCccccccccccccceeeec
Confidence                       2111111    1123556899999999 8999999999998 99999976432           13345


Q ss_pred             cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE------cCCCCceEEEEc
Q 035558          171 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW------SSSQPDWVAIAF  244 (253)
Q Consensus       171 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~  244 (253)
                      ..|...|.+++|+|++ ++|++|+.||.|++||+++++...       .+.+|...|.++++      +|+++++++++.
T Consensus       305 ~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~-------~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         305 IGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLL-------MLQGHRNSVISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             ECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEE-------EEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             ccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEE-------EEeCCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence            5688899999999999 699999999999999999876543       67789999999875      678888889999


Q ss_pred             CCcEEEEEC
Q 035558          245 STKLQILRV  253 (253)
Q Consensus       245 ~~~i~vw~l  253 (253)
                      |+.|+||++
T Consensus       377 Dg~I~iW~~  385 (388)
T d1erja_         377 DCKARIWKY  385 (388)
T ss_dssp             TSEEEEEEE
T ss_pred             CCEEEEEee
Confidence            999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-36  Score=232.74  Aligned_cols=226  Identities=13%  Similarity=0.233  Sum_probs=188.0

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce----
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA----   76 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----   76 (253)
                      +++.+|++|+ | .|+|||+.++    +....+..|.     .+|.+++|+ +++.++++|+.|+.+++|+.....    
T Consensus        65 ~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~~~~~~-----~~v~~v~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~  134 (340)
T d1tbga_          65 TDSRLLVSASQDGKLIIWDSYTT----NKVHAIPLRS-----SWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVR  134 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTT----EEEEEEECSC-----SCEEEEEEC-TTSSEEEEEETTCCEEEEESSSSCSCCC
T ss_pred             CCCCEEEEEECCCceeeeecccc----eeEEEEeccc-----ccEEeeEee-ccceeeeeecccceeecccccccccccc
Confidence            3677888887 5 9999999987    8888899998     899999999 899999999999999999975432    


Q ss_pred             eeee-----------------------------------------eecccccEEEEEec-CCCeEEEEeCCCcEEEEEcC
Q 035558           77 VDTQ-----------------------------------------LIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLR  114 (253)
Q Consensus        77 ~~~~-----------------------------------------~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~  114 (253)
                      ....                                         ...+...+....+. ...++++++.|+.|++||++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~  214 (340)
T d1tbga_         135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR  214 (340)
T ss_dssp             EEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECC
Confidence            1111                                         11233456666666 78899999999999999999


Q ss_pred             CCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeee--ecccccceeEEEEecCCCCeEEE
Q 035558          115 DKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVE--LQRHQASVNAIAWAPHSSCHICT  192 (253)
Q Consensus       115 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~  192 (253)
                      +++..   .....|...|++++|+| ++++|++++.|+. |++||++.... ...  ...+...|.+++|+|++ .+|++
T Consensus       215 ~~~~~---~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~-i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~-~~l~~  287 (340)
T d1tbga_         215 EGMCR---QTFTGHESDINAICFFP-NGNAFATGSDDAT-CRLFDLRADQE-LMTYSHDNIICGITSVSFSKSG-RLLLA  287 (340)
T ss_dssp             TTEEE---EEECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTTTEE-EEEECCTTCCSCEEEEEECSSS-CEEEE
T ss_pred             CCcEE---EEEeCCCCCeEEEEECC-CCCEEEEEeCCCe-EEEEeeccccc-ccccccccccCceEEEEECCCC-CEEEE
Confidence            88643   33446777999999999 9999999999999 99999987653 333  34567789999999999 69999


Q ss_pred             ecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          193 AGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       193 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |+.||.|++||+.+++...       .+.+|..+|++++|+|+++++++++.|+.|+||+
T Consensus       288 g~~dg~i~iwd~~~~~~~~-------~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         288 GYDDFNCNVWDALKADRAG-------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECCCEEEEEECCCCcEEE-------EEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999876543       6778999999999999999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-35  Score=224.75  Aligned_cols=238  Identities=13%  Similarity=0.165  Sum_probs=185.1

Q ss_pred             CCC-CCceEEeec-C-cEEEEEccCCccccc----eeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC--CCeEEEEe
Q 035558            1 ECQ-KPDLLATSS-D-FLRVWRISDEDRRVE----LKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI--DTTCTIWD   71 (253)
Q Consensus         1 sp~-~~~~l~~~~-~-~v~iw~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd   71 (253)
                      +|. ++.+|++|+ | +|+|||+........    ....+..|.     .+|.+++|+ ++++++++++.  ++.+++|+
T Consensus        72 sP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~-----~~v~~v~~s-~~~~~l~~~~~~~~~~~~~~~  145 (325)
T d1pgua1          72 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-----GPISDISWD-FEGRRLCVVGEGRDNFGVFIS  145 (325)
T ss_dssp             CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-----SCEEEEEEC-TTSSEEEEEECCSSCSEEEEE
T ss_pred             eeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccccccc-----CcEEEEEEC-CCCCccceeeccccceEEEEe
Confidence            463 678999887 5 999999976511111    122344566     899999999 88888887754  67899999


Q ss_pred             ccCceeeeeeecccccEEEEEec-CCC-eEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           72 IEREAVDTQLIAHDKEVYDIAWG-GVG-VFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        72 ~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      .++++.+..+.+|...|.+++|+ ++. .+++++.|+.+++||+...+..........+...|.+++|+|+.+.++++++
T Consensus       146 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~  225 (325)
T d1pgua1         146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG  225 (325)
T ss_dssp             TTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             ecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc
Confidence            99999999999999999999999 554 5788999999999999887655555556677778999999996688999999


Q ss_pred             eCCCeEEEEECCCCCCCeeeecccccceeEEEEe---cCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558          150 MDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWA---PHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE  226 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (253)
                      .|+. |++||+++.+ .+..+.+|..++.++.|+   |++ ++|++++.|+.|+|||+++++...     ......+...
T Consensus       226 ~d~~-i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~~~~-----~~~~~~~~~~  297 (325)
T d1pgua1         226 SDRK-ISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQ-----KWTLDKQQLG  297 (325)
T ss_dssp             TTCC-EEEEETTTCC-EEEECCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTEEEE-----EEECCTTCGG
T ss_pred             cccc-eeeeeecccc-ccccccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCCEEE-----EEEecCCccc
Confidence            9999 9999999866 478888888887766665   677 699999999999999999876332     0112223333


Q ss_pred             ee--EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          227 IE--QLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~--~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +.  ++.|.+++ .+++++.|+.|++|+|
T Consensus       298 ~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             CeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            33  44555544 6889999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-34  Score=224.08  Aligned_cols=206  Identities=11%  Similarity=0.165  Sum_probs=171.4

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce--eeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA--VDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                      .+|+|++|+ +++++||+|+.||.|++||.++++  .+..+++|.++|.+++|+ ++++|++++.|++|++||+++....
T Consensus         8 ~pIt~~~~s-~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           8 EPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SCCCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCeEEEEEC-CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            689999999 899999999999999999998775  667788999999999999 9999999999999999999876533


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCC---eeeecccccceeEEEEecCCCCeEEEecCC
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP---VVELQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      . ......+...|.+++|+| +++.|++++.++. +++|++......   ......|...|.+++|+|++ ++|++|+.|
T Consensus        87 ~-~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~D  162 (371)
T d1k8kc_          87 P-TLVILRINRAARCVRWAP-NEKKFAVGSGSRV-ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCD  162 (371)
T ss_dssp             E-EEECCCCSSCEEEEEECT-TSSEEEEEETTSS-EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETT
T ss_pred             c-cccccccccccccccccc-ccccceeecccCc-ceeeeeecccccccccccccccccccccccccccc-cceeccccC
Confidence            2 233345667899999999 8999999999998 999998775531   23345688899999999999 699999999


Q ss_pred             CcEEEEeccCCCCCCCC-----------CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          197 SQALIWDLSSMGQPVEG-----------GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++|++|+..........           .........|...|.+++|+|+++.+++++.|+.+++|++
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~  230 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  230 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee
Confidence            99999998765421100           0112344578899999999999998999999999999984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-33  Score=214.25  Aligned_cols=229  Identities=13%  Similarity=0.209  Sum_probs=174.6

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeee-cCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLL-NGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--   77 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--   77 (253)
                      +++++|++|+ | .|++||+.++    +....+ .+|.     ..|++++|+ +++.+ ++++.|+.+++|+......  
T Consensus        22 ~dg~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~h~-----~~v~~v~~~-~~g~~-~~~~~d~~v~~~~~~~~~~~~   90 (299)
T d1nr0a2          22 ADGKTLFSADAEGHINSWDISTG----ISNRVFPDVHA-----TMITGIKTT-SKGDL-FTVSWDDHLKVVPAGGSGVDS   90 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTC----CEEECSSCSCS-----SCEEEEEEC-TTSCE-EEEETTTEEEEECSSSSSSCT
T ss_pred             CCCCEEEEEcCCCeEEEEECCCC----cEEEEEcCCCC-----CcEEEEEee-cccee-ecccceeeEEEeccCCccccc
Confidence            3678888887 5 9999999887    666666 4677     899999999 77764 5666799999999754210  


Q ss_pred             -------------------------------eeee-------ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           78 -------------------------------DTQL-------IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        78 -------------------------------~~~~-------~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                                                     +..+       ......+.+++|+ +++++++++.||.|++||+++.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~  170 (299)
T d1nr0a2          91 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV  170 (299)
T ss_dssp             TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                           0000       0123456778888 889999999999999999987753


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC--CeeeecccccceeEEEEecCCCCeEEEecCC
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL--PVVELQRHQASVNAIAWAPHSSCHICTAGDD  196 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  196 (253)
                      ....  ...+...|.+++|+| ++.++++++.++. |++||+.+...  ....+..|...|++++|+|++ .+|++|+.|
T Consensus       171 ~~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~d  245 (299)
T d1nr0a2         171 SEVK--TIVHPAEITSVAFSN-NGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLD  245 (299)
T ss_dssp             EEEE--EEECSSCEEEEEECT-TSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             cccc--ccccccccccccccc-ccccccccccccc-cccccccccccccccccccccccccccccccccc-cceEEEcCC
Confidence            3222  224556899999999 8999999999998 99999987542  245567799999999999999 699999999


Q ss_pred             CcEEEEeccCCCCCCCCCCCCeeecc-CCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          197 SQALIWDLSSMGQPVEGGLDPILAYT-AGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       197 g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |.|++||+++.....     ...... +...+..+.|. +++.+++++.|+.|++|+|
T Consensus       246 g~i~iwd~~~~~~~~-----~~~~~~~~~~~v~~~~~~-~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         246 NSVIVWNMNKPSDHP-----IIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             SCEEEEETTCTTSCC-----EEETTSSTTSCEEEEEEE-ETTEEEEEETTSCEEEEEC
T ss_pred             CEEEEEECCCCCcce-----EEEecCCCCCcEEEEEEC-CCCEEEEEeCCCEEEEEec
Confidence            999999998876432     112223 35567777665 4567999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-33  Score=217.74  Aligned_cols=212  Identities=17%  Similarity=0.222  Sum_probs=178.5

Q ss_pred             cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC
Q 035558           27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD  105 (253)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  105 (253)
                      .+..+++++|.     ++|++++|+ +++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+ ++.++++++.|
T Consensus        45 ~~~~~tL~GH~-----~~I~~l~~s-~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  118 (340)
T d1tbga_          45 MRTRRTLRGHL-----AKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             CCEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeEEECCCC-----CCEEEEEEC-CCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccc
Confidence            36678899999     999999999 899999999999999999999999999999999999999999 99999999999


Q ss_pred             CcEEEEEcCCCCCeeee------------------------------------------eccCCCCCCeeEEEeeCCCCC
Q 035558          106 GSVRVFDLRDKEHSTII------------------------------------------YESSEPDTPLVRLGWNKQDPR  143 (253)
Q Consensus       106 g~i~i~d~~~~~~~~~~------------------------------------------~~~~~~~~~i~~~~~~~~~~~  143 (253)
                      +.+++|+..........                                          .........+....+.+ ...
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  197 (340)
T d1tbga_         119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTR  197 (340)
T ss_dssp             CCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSS
T ss_pred             ceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccc
Confidence            99999997654311100                                          00011233566677777 888


Q ss_pred             EEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccC
Q 035558          144 YMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTA  223 (253)
Q Consensus       144 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  223 (253)
                      ++++++.++. |++||+++.. ++..+.+|...|++++|+|++ .+|++|+.||.|++||++......     ......+
T Consensus       198 ~~~~~~~d~~-v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~~-----~~~~~~~  269 (340)
T d1tbga_         198 LFVSGACDAS-AKLWDVREGM-CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELM-----TYSHDNI  269 (340)
T ss_dssp             EEEEEETTTE-EEEEETTTTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE-----EECCTTC
T ss_pred             eeEEeecCce-EEEEECCCCc-EEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeeccccccc-----ccccccc
Confidence            9999999998 9999999865 478889999999999999999 699999999999999998766432     1223456


Q ss_pred             CCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          224 GAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       224 ~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...|.+++|+|+++++++++.|+.|++|++
T Consensus       270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             CSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred             cCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence            788999999999999999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-33  Score=215.03  Aligned_cols=233  Identities=12%  Similarity=0.157  Sum_probs=175.3

Q ss_pred             CCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-CCCCEEEEEeCCCeEEEEeccCceee-
Q 035558            4 KPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-AEPRRIGTSSIDTTCTIWDIEREAVD-   78 (253)
Q Consensus         4 ~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~-   78 (253)
                      +++.|+.+++   .|+.|+...  ........+.+|..    ..|++++|+| .++.+|++|+.||+|++||+..++.. 
T Consensus        28 ~~~~la~~~~~~~~i~~~~~~~--~~~~~~~~~~gh~~----~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~  101 (325)
T d1pgua1          28 TTNAIAYPCGKSAFVRCLDDGD--SKVPPVVQFTGHGS----SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN  101 (325)
T ss_dssp             TTTEEEEEETTEEEEEECCSSC--CSSCSEEEECTTTT----SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred             CCCEEEEEeCCCEEEEEEeCCC--CCccceEEEeCCCC----CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee
Confidence            4456665554   455565433  33345666777752    6899999996 36789999999999999999765432 


Q ss_pred             -------eeeecccccEEEEEec-CCCeEEEEeC--CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           79 -------TQLIAHDKEVYDIAWG-GVGVFASVSA--DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        79 -------~~~~~~~~~v~~~~~~-~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                             ..+..|.++|.+++|+ ++.++++++.  ++.+++|+.++++.   +.....|...|.+++|+|....+++++
T Consensus       102 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1         102 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS---LGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE---EEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             eeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc---ceeeeecccccccccccccccceEEEe
Confidence                   2344678899999999 9898887764  77899999988763   334456777999999999444567788


Q ss_pred             EeCCCeEEEEECCCCCCC--eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558          149 IMDSAKVVVLDIRFPTLP--VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE  226 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (253)
                      +.|+. +++||.+..+..  ......|...|.+++|+|++..+|++++.|+.|++||+++++...       .+.+|..+
T Consensus       179 ~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~-------~l~~~~~~  250 (325)
T d1pgua1         179 GDDGS-VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK-------YIEDDQEP  250 (325)
T ss_dssp             ETTTE-EEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE-------ECCBTTBC
T ss_pred             ecccc-cccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc-------cccccccc
Confidence            88887 999998765421  223456778899999999865799999999999999998876433       55566666


Q ss_pred             eeEEEEc---CCCCceEEEEcCCcEEEEEC
Q 035558          227 IEQLQWS---SSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~---~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +.++.|+   |++++|++++.|+.|+||++
T Consensus       251 v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         251 VQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             CCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             cccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence            6555554   67788999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-33  Score=214.91  Aligned_cols=212  Identities=12%  Similarity=0.156  Sum_probs=171.7

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee-cccccEEEEEec-CCCeEEEEeCC
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GVGVFASVSAD  105 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d  105 (253)
                      +..++++||.     .+|++++|+ |++++|++|+.||+|++||+++++....+. .|...|++++|+ ++. +++++.|
T Consensus         3 ~~~~~~~GH~-----~~V~~l~~s-~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d   75 (299)
T d1nr0a2           3 SIDQVRYGHN-----KAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWD   75 (299)
T ss_dssp             EEEEEECCCS-----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETT
T ss_pred             ccceEcCCCC-----CCcEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccce
Confidence            5678899999     899999999 899999999999999999999998887774 689999999999 665 5667789


Q ss_pred             CcEEEEEcCCCCCe-------------eeee-c-----------------------cCCCCCCeeEEEeeCCCCCEEEEE
Q 035558          106 GSVRVFDLRDKEHS-------------TIIY-E-----------------------SSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus       106 g~i~i~d~~~~~~~-------------~~~~-~-----------------------~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      +.+++|+.......             ..+. .                       .......+.+++|+| ++++++++
T Consensus        76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g  154 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVG  154 (299)
T ss_dssp             TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEE
T ss_pred             eeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            99999997643210             0000 0                       000123577889999 89999999


Q ss_pred             EeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          149 IMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      +.++. |++||+++..........|...|++++|+|++ .+|++++.|+.|++||+.+.....    .......|..+|+
T Consensus       155 ~~dg~-i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~----~~~~~~~h~~~v~  228 (299)
T d1nr0a2         155 GQDSK-VHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELA----HTNSWTFHTAKVA  228 (299)
T ss_dssp             ETTSE-EEEEEEETTEEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEES----CCCCCCCCSSCEE
T ss_pred             ccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc----ccccccccccccc
Confidence            99998 99999987653233455688999999999999 699999999999999998765332    1234557899999


Q ss_pred             EEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          229 QLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +++|+|+++++++++.|+.|++|++
T Consensus       229 ~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         229 CVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccceEEEcCCCEEEEEEC
Confidence            9999999999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-33  Score=209.90  Aligned_cols=207  Identities=20%  Similarity=0.266  Sum_probs=174.9

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-C-----------
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-G-----------   95 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~-----------   95 (253)
                      .....+++|.     ++|++++|+ |++++|++|+.||+|++||+++++.+..+.+|...|.+++|+ +           
T Consensus         8 ~~~~~L~GH~-----~~I~~l~~s-p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           8 PEKYALSGHR-----SPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             SCSCEEECCS-----SCEEEEEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CccEEEcCCC-----CCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence            4456789999     999999999 789999999999999999999988888777777777777665 3           


Q ss_pred             -------------------------------CCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCE
Q 035558           96 -------------------------------VGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRY  144 (253)
Q Consensus        96 -------------------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  144 (253)
                                                     ++.+++++.|+.+++||+++++....+   ..+...+.+++|+| ++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~  157 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---TGHREWVRMVRPNQ-DGTL  157 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECT-TSSE
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE---ccCCCcceeeeccc-CCCE
Confidence                                           445678888888888888887643333   35566899999999 8999


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCC-------------------CeEEEecCCCcEEEEecc
Q 035558          145 MATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSS-------------------CHICTAGDDSQALIWDLS  205 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~l~~~~~dg~i~iwd~~  205 (253)
                      |++++.|+. |++|++++.. ....+..|...+.+++|+|++.                   .++++++.|+.|++||++
T Consensus       158 l~~~~~d~~-v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         158 IASCSNDQT-VRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             EEEEETTSC-EEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             EEEEeCCCe-EEEEeeccce-eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence            999999999 9999999865 4788888999999999988641                   368999999999999999


Q ss_pred             CCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          206 SMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++...       ..+.+|..+|.+++|+|+++++++++.|+.|++|++
T Consensus       236 ~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         236 TGMCL-------MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  276 (317)
T ss_dssp             TTEEE-------EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             CCcEE-------EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            87643       366789999999999999999999999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-31  Score=210.04  Aligned_cols=233  Identities=10%  Similarity=0.137  Sum_probs=176.5

Q ss_pred             eEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee---
Q 035558            7 LLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI---   82 (253)
Q Consensus         7 ~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---   82 (253)
                      .+....+ .+.+|+..........+....+|+     +.|++++|+ +++++|++|+ |+.|++||+.+++.+..+.   
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~-----~~V~~l~fs-~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~  103 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHT-----SVVCCVKFS-NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS  103 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECS-----SCCCEEEEC-TTSSEEEEEC-BSCEEEEETTTCCEEEEECC--
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCC-----CcEEEEEEC-CCCCEEEEEe-CCeEEEEEecccceEeeecccc
Confidence            3444445 888999765411111112223577     899999999 8999999987 8999999999887665543   


Q ss_pred             ---------------cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE
Q 035558           83 ---------------AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA  146 (253)
Q Consensus        83 ---------------~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  146 (253)
                                     .|...|++++|+ ++++|++|+.||.|++||...++.   ......|...|.+++|++ ++..++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~---~~~~~~h~~~v~~~~~~~-~~~~~~  179 (388)
T d1erja_         104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI---VMILQGHEQDIYSLDYFP-SGDKLV  179 (388)
T ss_dssp             ---------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             cccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccc---cccccccccccccccccc-cccccc
Confidence                           356679999999 999999999999999999988763   333456777999999999 889999


Q ss_pred             EEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558          147 TIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAE  226 (253)
Q Consensus       147 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (253)
                      +++.++. +++||.++... ......+ ....++.+.+..+.+|++++.||.|++||.+++..............+|..+
T Consensus       180 ~~~~~~~-i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~  256 (388)
T d1erja_         180 SGSGDRT-VRIWDLRTGQC-SLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS  256 (388)
T ss_dssp             EEETTSE-EEEEETTTTEE-EEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred             cccccee-eeeeecccccc-ccccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCC
Confidence            9998888 99999987543 4444434 4455566665433799999999999999999876433111222344578999


Q ss_pred             eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          227 IEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |.+++|+|+++.+++++.|+.+++|++
T Consensus       257 v~~l~~s~~~~~l~s~~~d~~i~iwd~  283 (388)
T d1erja_         257 VYSVVFTRDGQSVVSGSLDRSVKLWNL  283 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEec
Confidence            999999999999999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=208.29  Aligned_cols=202  Identities=14%  Similarity=0.210  Sum_probs=160.0

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCc
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGS  107 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~  107 (253)
                      ++++++++|.     .+|++++|+ +    |++|+.||+|++||+.++.     .+|...|.+++++++..+++++.|++
T Consensus         4 ~~i~~l~gH~-----~~I~~l~~s-~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~~s~s~D~~   68 (287)
T d1pgua2           4 EVLKTISGHN-----KGITALTVN-P----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWDDT   68 (287)
T ss_dssp             EEEEEECCCS-----SCEEEEETT-T----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred             ceeEEECCCC-----CceEEEEEC-c----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeEEEEeeccc
Confidence            7889999999     999999998 4    8999999999999987643     46777888888774456777788888


Q ss_pred             EEEEEcCCCC----------------------------------Ce----------------------------------
Q 035558          108 VRVFDLRDKE----------------------------------HS----------------------------------  119 (253)
Q Consensus       108 i~i~d~~~~~----------------------------------~~----------------------------------  119 (253)
                      +++|++...+                                  ..                                  
T Consensus        69 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          69 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred             cccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeec
Confidence            8877653210                                  00                                  


Q ss_pred             ----eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCC---------
Q 035558          120 ----TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHS---------  186 (253)
Q Consensus       120 ----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---------  186 (253)
                          ........+...+++++|+| ++.+|++++.++. |++||+.+.......+..|...|.+++|+|.+         
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~  226 (287)
T d1pgua2         149 SDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGK-ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE  226 (287)
T ss_dssp             TEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             cccceeeeeeeccCCceeEEEecc-Ccccccccccccc-ccceeecccccccccccccccccceeeecccccccccccCC
Confidence                00001122456799999999 8999999999999 99999988664445677899999999999853         


Q ss_pred             CCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          187 SCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       187 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..+|++|+.|++|++||++......      ....+|...|++++|+|++ .+++++.|+.|++|++
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~~~~~~------~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKRPMKII------KALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCE------EETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCeeEeecCCCeEEEEECCCCCeEE------EEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            2489999999999999998755433      4566899999999999987 5999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-31  Score=203.00  Aligned_cols=223  Identities=16%  Similarity=0.264  Sum_probs=172.2

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++++|++|+ | +|+|||+.++    +++.++++|.     ++|++++|+ + +++|++|+.|+.|++|+....+.....
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~----~~~~~l~~H~-----~~V~~l~~s-~-~~~l~s~s~D~~i~iw~~~~~~~~~~~   90 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINK----KFLLQLSGHD-----GGVWALKYA-H-GGILVSGSTDRTVRVWDIKKGCCTHVF   90 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTT----EEEEEEECCS-----SCEEEEEEE-T-TTEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCC----cEEEEEECCC-----CCEEEEEEc-C-CCEEEEEeccccccccccccccccccc
Confidence            467888887 4 9999999987    8899999999     899999998 5 468999999999999999988766555


Q ss_pred             eccc--ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCee--------------------------------------
Q 035558           82 IAHD--KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHST--------------------------------------  120 (253)
Q Consensus        82 ~~~~--~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~--------------------------------------  120 (253)
                      ....  .......+. ++..+++++.|+.|++||+++.....                                      
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (355)
T d1nexb2          91 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH  170 (355)
T ss_dssp             CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE
T ss_pred             ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc
Confidence            4332  333444555 77788888888888888876532100                                      


Q ss_pred             ----------------------eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee
Q 035558          121 ----------------------IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN  178 (253)
Q Consensus       121 ----------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~  178 (253)
                                            .+.....+...+.++.|+| ++.++++++.|+. |++||+++.. .+..+.+|...|.
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~-i~i~d~~~~~-~~~~~~~h~~~v~  247 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTT-IRIWDLENGE-LMYTLQGHTALVG  247 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSC-EEEEETTTCC-EEEEECCCSSCCC
T ss_pred             cceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccce-EEeeeccccc-ccccccccccccc
Confidence                                  0111122345677888999 8899999999998 9999999866 4888999999999


Q ss_pred             EEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEE-cCCCCceEEEEcCCcEEEEEC
Q 035558          179 AIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQW-SSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ++++++   ++|++++.||.|++||+++...         ....|...+.++.+ ++++ .+++++.|+.|++|++
T Consensus       248 ~~~~~~---~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~l~~g~d~~i~vwd~  310 (355)
T d1nexb2         248 LLRLSD---KFLVSAAADGSIRGWDANDYSR---------KFSYHHTNLSAITTFYVSD-NILVSGSENQFNIYNL  310 (355)
T ss_dssp             EEEECS---SEEEEECTTSEEEEEETTTCCE---------EEEEECTTCCCCCEEEECS-SEEEEEETTEEEEEET
T ss_pred             cccccc---ceeeeeecccccccccccccce---------ecccccCCceEEEEEcCCC-CEEEEEeCCEEEEEEC
Confidence            999874   4899999999999999987652         34456666666654 5555 5777788999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-30  Score=198.71  Aligned_cols=224  Identities=21%  Similarity=0.259  Sum_probs=166.4

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce-----
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----   76 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----   76 (253)
                      +|++|++|+ | +|+|||+.++    +++.++.+|.     ..|.+++|+ +  ++|++|+.|+.+++|+.....     
T Consensus        26 ~g~~l~sgs~Dg~i~vWd~~~~----~~~~~~~~h~-----~~V~~v~~~-~--~~l~s~s~D~~~~~~~~~~~~~~~~~   93 (342)
T d2ovrb2          26 CGNRIVSGSDDNTLKVWSAVTG----KCLRTLVGHT-----GGVWSSQMR-D--NIIISGSTDRTLKVWNAETGECIHTL   93 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTTC----CEEEECCCCS-----SCEEEEEEE-T--TEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCC----CEEEEEeCCC-----CCEEEEEeC-C--Cccccceecccccccccccccceecc
Confidence            577889887 5 9999999987    8889999999     899999998 3  489999999999999876421     


Q ss_pred             ---------------------------------------------------------------------------eeeee
Q 035558           77 ---------------------------------------------------------------------------VDTQL   81 (253)
Q Consensus        77 ---------------------------------------------------------------------------~~~~~   81 (253)
                                                                                                 .+..+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  173 (342)
T d2ovrb2          94 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL  173 (342)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred             cccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEE
Confidence                                                                                       11112


Q ss_pred             ecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECC
Q 035558           82 IAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIR  161 (253)
Q Consensus        82 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  161 (253)
                      .+|...+..+.+ ++..+++++.||.|++||++..+.   +.....+...+.++++++   ++|++++.|+. |++||+.
T Consensus       174 ~~~~~~~~~~~~-~~~~l~s~~~dg~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~-i~iwd~~  245 (342)
T d2ovrb2         174 QGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNC---IHTLTGHQSLTSGMELKD---NILVSGNADST-VKIWDIK  245 (342)
T ss_dssp             CCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCE---EEEECCCCSCEEEEEEET---TEEEEEETTSC-EEEEETT
T ss_pred             cCcccccccccC-CCCEEEEEeCCCeEEEeeccccee---eeEecccccceeEEecCC---CEEEEEcCCCE-EEEEecc
Confidence            223333333222 678899999999999999998874   333446666888888764   69999999998 9999998


Q ss_pred             CCCCCeeeec---ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          162 FPTLPVVELQ---RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       162 ~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      ..+. ...+.   .|...+.++.++  + .++++|+.||+|++||+++++.....  ......+|...|++++|+|++..
T Consensus       246 ~~~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~s~s~Dg~i~iwd~~tg~~i~~~--~~~~~~~~~~~v~~v~~s~~~~~  319 (342)
T d2ovrb2         246 TGQC-LQTLQGPNKHQSAVTCLQFN--K-NFVITSSDDGTVKLWDLKTGEFIRNL--VTLESGGSGGVVWRIRASNTKLV  319 (342)
T ss_dssp             TCCE-EEEECSTTSCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCEEEEE--EECTTGGGTCEEEEEEECSSEEE
T ss_pred             cccc-cccccccceeeeceeecccC--C-CeeEEEcCCCEEEEEECCCCCEEEEE--ecccCCCCCCCEEEEEECCCCCE
Confidence            7653 44444   355566666665  4 48999999999999999987643200  00012357889999999999976


Q ss_pred             eEEEEcCCc----EEEEEC
Q 035558          239 WVAIAFSTK----LQILRV  253 (253)
Q Consensus       239 ~~~~~~~~~----i~vw~l  253 (253)
                      +++++.||.    +++|++
T Consensus       320 la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         320 CAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             EEEECSSSSSCCEEEEEEC
T ss_pred             EEEEeCCCCCeeEEEEEeC
Confidence            667777774    899985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-30  Score=194.74  Aligned_cols=223  Identities=19%  Similarity=0.298  Sum_probs=171.7

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee--
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT--   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--   79 (253)
                      ++++||+|+ | +|+|||+.++    +++.++++|.     .+|++++|+   +++|++|+.|+.|++|++..+....  
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~----~~~~~l~~H~-----~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~~~   91 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTL----ECKRILTGHT-----GSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTL   91 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSC----CEEEEECCCS-----SCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             cCCEEEEEeCCCeEEEEECCCC----cEEEEEecCC-----CCEeeeecc---cceeecccccccccccccccccccccc
Confidence            678899887 5 9999999987    8899999999     899999875   6799999999999999987643211  


Q ss_pred             -----------------------------------------eeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCC
Q 035558           80 -----------------------------------------QLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEH  118 (253)
Q Consensus        80 -----------------------------------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  118 (253)
                                                               .+..|...+..+.+ ....+++++.|+.|++||+++.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~d~~i~~~d~~~~~~  170 (293)
T d1p22a2          92 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEF  170 (293)
T ss_dssp             CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCE
T ss_pred             cccccccccccccccceeecccccceeEeecccccccccccccccccccccccee-cccccccccCCCceeeecCCCCcE
Confidence                                                     11234445554444 356788899999999999998874


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      ...+   ..+...+..+.++   +..+++++.|+. |++||+++.. .+.....|...+..  +.+++ .+|++|+.||.
T Consensus       171 ~~~~---~~~~~~v~~~~~~---~~~l~~~~~dg~-i~i~d~~~~~-~~~~~~~~~~~v~~--~~~~~-~~l~sg~~dg~  239 (293)
T d1p22a2         171 VRTL---NGHKRGIACLQYR---DRLVVSGSSDNT-IRLWDIECGA-CLRVLEGHEELVRC--IRFDN-KRIVSGAYDGK  239 (293)
T ss_dssp             EEEE---ECCSSCEEEEEEE---TTEEEEEETTSC-EEEEETTTCC-EEEEECCCSSCEEE--EECCS-SEEEEEETTSC
T ss_pred             EEEE---cccccccccccCC---CCeEEEecCCCE-EEEEecccce-eeeeecccceeeee--ccccc-eEEEEEcCCCE
Confidence            4333   3444577777775   468999999998 9999999865 47778888887765  45566 59999999999


Q ss_pred             EEEEeccCCCCCCCC--CCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          199 ALIWDLSSMGQPVEG--GLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       199 i~iwd~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |++||+.....+...  ......+.+|..+|++++|++  .+|++++.|+.|++||
T Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--SCEEECCSSSEEEEEC
T ss_pred             EEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--CEEEEEecCCEEEEeC
Confidence            999999765433211  112245678999999999964  4799999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-30  Score=202.60  Aligned_cols=245  Identities=12%  Similarity=0.200  Sum_probs=164.5

Q ss_pred             CceEEeec-C-cEEEEEccCCcccc--ceeeeecCCCCccc-cCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRV--ELKSLLNGNKNSEY-CGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~--~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      ++++++++ | +|++||....+...  ........|....+ ......+..++.+..++++++.||.|++|++.......
T Consensus        24 ~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~  103 (393)
T d1sq9a_          24 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK  103 (393)
T ss_dssp             SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred             CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCcee
Confidence            45777776 5 99999986642211  11222223431100 01122233332234578899999999999986543221


Q ss_pred             ee----------ecccccEEEEEec-C-----CCeEEEEeCCCcEEEEEcCCCCC---------------eeeeeccCCC
Q 035558           80 QL----------IAHDKEVYDIAWG-G-----VGVFASVSADGSVRVFDLRDKEH---------------STIIYESSEP  128 (253)
Q Consensus        80 ~~----------~~~~~~v~~~~~~-~-----~~~l~~~~~dg~i~i~d~~~~~~---------------~~~~~~~~~~  128 (253)
                      .+          ..+...+..++|. +     +.++++++.||.+++|++.....               .........+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (393)
T d1sq9a_         104 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP  183 (393)
T ss_dssp             CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS
T ss_pred             eeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCC
Confidence            11          1244567777776 3     46889999999999999864321               0111222344


Q ss_pred             CCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----CeeeecccccceeEEEEecCCCCeEEEecCCCc---EE
Q 035558          129 DTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ---AL  200 (253)
Q Consensus       129 ~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~---i~  200 (253)
                      ...+.+++|+| ++ +|++|+.|+. |++||+++.+.     ....+.+|..+|++++|+|++ ++|++|+.|++   |+
T Consensus       184 ~~~~~~v~~s~-dg-~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~  259 (393)
T d1sq9a_         184 SQFATSVDISE-RG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCIT  259 (393)
T ss_dssp             CCCCCEEEECT-TS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEE
T ss_pred             CCcEEEEEECC-CC-EEEEEeCCCc-EEEEeecccccccccccccccccccceEEEccccccc-ceeeeecCCCCcceee
Confidence            45789999998 65 8899999988 99999987652     123455789999999999999 69999998875   89


Q ss_pred             EEeccCCCCCC------CCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          201 IWDLSSMGQPV------EGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       201 iwd~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +||+++++...      ..........+|...|++++|+|++++|++++.|+.|++|++
T Consensus       260 lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            99998865322      011122345689999999999999999999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-29  Score=193.55  Aligned_cols=203  Identities=18%  Similarity=0.213  Sum_probs=155.8

Q ss_pred             eeeecCCCCccccCC-eeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcE
Q 035558           30 KSLLNGNKNSEYCGP-LTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSV  108 (253)
Q Consensus        30 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i  108 (253)
                      ..++++|.     .. ++|++|+   +++|++|+.||+|++||+.+++.+..+.+|.++|++++|+++++|++|+.|++|
T Consensus         5 ~~tL~GH~-----~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i   76 (355)
T d1nexb2           5 RTTLRGHM-----TSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTV   76 (355)
T ss_dssp             EEEEECCS-----SSCEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCE
T ss_pred             cEEECCcC-----CCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccc
Confidence            56789998     55 4667664   789999999999999999999999999999999999999955689999999999


Q ss_pred             EEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-----------------------
Q 035558          109 RVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-----------------------  165 (253)
Q Consensus       109 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----------------------  165 (253)
                      ++|++...+....... ...........+.+ ++.++++++.|+. |++||+++...                       
T Consensus        77 ~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEG-HNSTVRCLDIVEYK-NIKYIVTGSRDNT-LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             EEEETTTTEEEEEECC-CSSCEEEEEEEEET-TEEEEEEEETTSE-EEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             cccccccccccccccc-cccccccccccccc-ccceeeeecCCCc-EEEEEccCCceeccccccceeccceeccccccce
Confidence            9999988763322221 12222334444555 5666666666665 66666643210                       


Q ss_pred             ---------------------------------------CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          166 ---------------------------------------PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       166 ---------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                                                             .+.....+...+.++.|+|++ .++++++.|+.|++||+++
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTT
T ss_pred             eeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc-eeeecccccceEEeeeccc
Confidence                                                   123334456677889999998 5999999999999999998


Q ss_pred             CCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          207 MGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +....       ...+|...|.+++|+++  .+++++.|+.|++|++
T Consensus       233 ~~~~~-------~~~~h~~~v~~~~~~~~--~l~~~~~dg~i~iwd~  270 (355)
T d1nexb2         233 GELMY-------TLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDA  270 (355)
T ss_dssp             CCEEE-------EECCCSSCCCEEEECSS--EEEEECTTSEEEEEET
T ss_pred             ccccc-------ccccccccccccccccc--eeeeeecccccccccc
Confidence            76543       67789999999999864  7889999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3e-29  Score=197.64  Aligned_cols=238  Identities=13%  Similarity=0.202  Sum_probs=167.2

Q ss_pred             CceEEeec-C-cEEEEEccCCcccccee-eeecCCCCccccCCeeEEEecCC----CCCEEEEEeCCCeEEEEeccCce-
Q 035558            5 PDLLATSS-D-FLRVWRISDEDRRVELK-SLLNGNKNSEYCGPLTSFDWNEA----EPRRIGTSSIDTTCTIWDIEREA-   76 (253)
Q Consensus         5 ~~~l~~~~-~-~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~-   76 (253)
                      ..++++++ + .|++|++.......... ..............+..++|.+.    .+.++++++.||.+++|++.... 
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            34666776 5 99999987642111111 11122222222356778888732    24688999999999999985321 


Q ss_pred             -----------------eeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeee---ccCCCCCCeeEEE
Q 035558           77 -----------------VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIY---ESSEPDTPLVRLG  136 (253)
Q Consensus        77 -----------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~i~~~~  136 (253)
                                       .......+...+.+++|+...+|++|+.||+|++||+++++......   ....|..+|.+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                             11111234566889999933489999999999999999887544333   2345778999999


Q ss_pred             eeCCCCCEEEEEEeCCC--eEEEEECCCCCCCeee-------------ecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558          137 WNKQDPRYMATIIMDSA--KVVVLDIRFPTLPVVE-------------LQRHQASVNAIAWAPHSSCHICTAGDDSQALI  201 (253)
Q Consensus       137 ~~~~~~~~l~~~~~~~~--~i~~~d~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  201 (253)
                      |+| ++++|++++.|+.  .|++||++++.. +..             +.+|...|++++|+|++ ++|++|+.|++|++
T Consensus       239 ~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~v  315 (393)
T d1sq9a_         239 FSP-QGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRF  315 (393)
T ss_dssp             ECS-STTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEE
T ss_pred             ccc-ccceeeeecCCCCcceeeeccccccee-eeeeccccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEE
Confidence            999 9999999999874  489999987542 333             34799999999999999 69999999999999


Q ss_pred             EeccCCCCCCCCCCCCeeeccC---------------------CCceeEEEEcCCC----------CceEEEEcCCcEEE
Q 035558          202 WDLSSMGQPVEGGLDPILAYTA---------------------GAEIEQLQWSSSQ----------PDWVAIAFSTKLQI  250 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~----------~~~~~~~~~~~i~v  250 (253)
                      ||+++++...       .+.+|                     ...+.++.|.+.+          ..+++++.|+.+++
T Consensus       316 Wd~~~g~~~~-------~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~  388 (393)
T d1sq9a_         316 WDVKTKERIT-------TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  388 (393)
T ss_dssp             EETTTTEEEE-------EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             EECCCCCEEE-------EECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEE
Confidence            9999876432       22333                     2346677776543          24778999999999


Q ss_pred             EE
Q 035558          251 LR  252 (253)
Q Consensus       251 w~  252 (253)
                      |+
T Consensus       389 ~~  390 (393)
T d1sq9a_         389 FR  390 (393)
T ss_dssp             EE
T ss_pred             Ee
Confidence            86

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4e-28  Score=185.93  Aligned_cols=242  Identities=12%  Similarity=0.083  Sum_probs=173.3

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   81 (253)
                      ++++|++++ | +|+|||++..... .......+|.     .+|++++|+|.++.+|++|+.||.|++|+..........
T Consensus        22 ~~~~L~s~s~Dg~v~iwd~~~~~~~-~~~~~~~~h~-----~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~   95 (342)
T d1yfqa_          22 SKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRYK-----HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL   95 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEECS-----SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred             CCCEEEEEECCCeEEEEEccCCCcc-eEEEEecCCC-----CCEEEEEEeCCCCCEEEEcccccceeeeecccccccccc
Confidence            567888877 6 9999999875221 2223333677     899999999666778999999999999999887766655


Q ss_pred             ecccccE-EEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec-c--CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           82 IAHDKEV-YDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE-S--SEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        82 ~~~~~~v-~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~--~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ..+.... ....+. +...+++++.++.+++||++.......... .  .........+.+.+ .+..+++++.++. |+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~-i~  173 (342)
T d1yfqa_          96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQ-VQ  173 (342)
T ss_dssp             BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTE-EE
T ss_pred             cccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCc-EE
Confidence            5444433 333444 888999999999999999986553332221 1  11222445566677 7889999999998 99


Q ss_pred             EEECCCCCCC--eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC--------CCCeeeccCCCc
Q 035558          157 VLDIRFPTLP--VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG--------LDPILAYTAGAE  226 (253)
Q Consensus       157 ~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~  226 (253)
                      +||++.....  ......+...+.+..+.+.....+++++.||.+.+|+...........        ........|...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
T d1yfqa_         174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP  253 (342)
T ss_dssp             EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred             EEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccc
Confidence            9999876532  223334445566666666554689999999999999987654332111        111223456778


Q ss_pred             eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          227 IEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      +++++|+|++++|++++.|+.|++|++
T Consensus       254 v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         254 VNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ceeEEecCCccEEEEECCCCEEEEEEC
Confidence            999999999999999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-28  Score=187.36  Aligned_cols=205  Identities=15%  Similarity=0.161  Sum_probs=157.8

Q ss_pred             cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCC
Q 035558           27 VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADG  106 (253)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg  106 (253)
                      .++...+++|.     +.|.+ +++ +++++|++|+.||+|+|||+++++++..+.+|...|.+++|+ +++|++++.|+
T Consensus         6 ~~~~~~l~GH~-----~~V~s-~~~-~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~-~~~l~s~s~D~   77 (342)
T d2ovrb2           6 LKSPKVLKGHD-----DHVIT-CLQ-FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDR   77 (342)
T ss_dssp             CCCCEEEECST-----TSCEE-EEE-EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTS
T ss_pred             CCcCEEECCcC-----CceEE-EEE-ECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeC-CCccccceecc
Confidence            37788899999     77754 344 458999999999999999999999999999999999999997 45999999999


Q ss_pred             cEEEEEcCCCCCeee-----------------------------------------------------------------
Q 035558          107 SVRVFDLRDKEHSTI-----------------------------------------------------------------  121 (253)
Q Consensus       107 ~i~i~d~~~~~~~~~-----------------------------------------------------------------  121 (253)
                      .+++|+.........                                                                 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            999998765321000                                                                 


Q ss_pred             ------------eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCe
Q 035558          122 ------------IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCH  189 (253)
Q Consensus       122 ------------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  189 (253)
                                  +.....+  ......+.+ ++.++++++.|+. |++||++..+ ++..+..|...+.++++++   .+
T Consensus       158 ~i~~~d~~~~~~~~~~~~~--~~~~~~~~~-~~~~l~s~~~dg~-i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~---~~  229 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGH--TNRVYSLQF-DGIHVVSGSLDTS-IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NI  229 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCC--SSCEEEEEE-CSSEEEEEETTSC-EEEEETTTCC-EEEEECCCCSCEEEEEEET---TE
T ss_pred             eEEEeecccceeeEEEcCc--ccccccccC-CCCEEEEEeCCCe-EEEeecccce-eeeEecccccceeEEecCC---CE
Confidence                        0000011  112233344 6789999999999 9999999865 4888889999999888765   48


Q ss_pred             EEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          190 ICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       190 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      |++++.||.|++||+...+...    .......|...+.+++++++  ++++++.|+.|++|++
T Consensus       230 l~s~s~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQCLQ----TLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL  287 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEE----EECSTTSCSSCEEEEEECSS--EEEEEETTSEEEEEET
T ss_pred             EEEEcCCCEEEEEecccccccc----cccccceeeeceeecccCCC--eeEEEcCCCEEEEEEC
Confidence            9999999999999998876432    00112346778888888764  7889999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.4e-27  Score=185.08  Aligned_cols=186  Identities=11%  Similarity=0.036  Sum_probs=150.5

Q ss_pred             CCCCCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC--eEEEEeccCcee
Q 035558            1 ECQKPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT--TCTIWDIEREAV   77 (253)
Q Consensus         1 sp~~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~   77 (253)
                      ||.+|+++|++++ .|++|++..+    ...+.  +|.     ..|.+++|+ |++++|++++.+.  .|++||.++++.
T Consensus        11 SP~dG~~~a~~~~g~v~v~d~~~~----~~~~~--~~~-----~~v~~~~~s-pDg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3          11 SPLDGDLIAFVSRGQAFIQDVSGT----YVLKV--PEP-----LRIRYVRRG-GDTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EECGGGCEEEEETTEEEEECTTSS----BEEEC--SCC-----SCEEEEEEC-SSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             cCCCCCEEEEEECCeEEEEECCCC----cEEEc--cCC-----CCEEEEEEC-CCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            5779999999998 9999999885    44433  577     789999999 8999888766553  799999987765


Q ss_pred             eeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC----
Q 035558           78 DTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS----  152 (253)
Q Consensus        78 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----  152 (253)
                      . .+..|...|.+++|+ ++++|++++.++.+++|++.+.+.....   ..+...+.+++|+| ++++|+.+..+.    
T Consensus        79 ~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~  153 (360)
T d1k32a3          79 E-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE---RSREAMITDFTISD-NSRFIAYGFPLKHGET  153 (360)
T ss_dssp             E-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSSCCCCEEECT-TSCEEEEEEEECSSTT
T ss_pred             E-EeeCCCceEEeeeecccccccceeccccccccccccccceeeee---ecccccccchhhcc-ceeeeeeeccccccce
Confidence            4 466799999999999 9999999999999999999988754443   23445788999999 899988765332    


Q ss_pred             -----CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          153 -----AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       153 -----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                           ..+++||+.+..  ...+..+...+..++|+|+| ++|++++.|+.+.+|+...
T Consensus       154 ~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         154 DGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             CSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSS
T ss_pred             eeccccceeeeccccCc--eeeecccccccccccccCCC-CEEEEEeCCCceEcccccc
Confidence                 238899998754  45555677788999999999 6999999999999998643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-26  Score=174.04  Aligned_cols=200  Identities=15%  Similarity=0.222  Sum_probs=155.0

Q ss_pred             ceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCc
Q 035558           28 ELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGS  107 (253)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~  107 (253)
                      +.+.....|.     ..|+|++|   ++++|++|+.||+|+|||+++++++..+++|..+|++++| ++++|++|+.|+.
T Consensus         6 ~~i~~~~~~~-----~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~-~~~~l~s~s~D~~   76 (293)
T d1p22a2           6 QRIHCRSETS-----KGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDST   76 (293)
T ss_dssp             CCEECCCSSC-----CCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSC
T ss_pred             EEEeccCCCC-----CCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec-ccceeeccccccc
Confidence            3444455555     78998765   5889999999999999999999999999999999999988 5789999999999


Q ss_pred             EEEEEcCCCCCeeee----------------------------------------eccCCCCCCeeEEEeeCCCCCEEEE
Q 035558          108 VRVFDLRDKEHSTII----------------------------------------YESSEPDTPLVRLGWNKQDPRYMAT  147 (253)
Q Consensus       108 i~i~d~~~~~~~~~~----------------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~  147 (253)
                      |++|++..+......                                        .....+...+..+.+.   ...+++
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~  153 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVS  153 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec---cccccc
Confidence            999999876421110                                        0111233344444443   457788


Q ss_pred             EEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          148 IIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       148 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      ++.|+. |++||+++.+ ++..+.++...+..+.+++   .++++++.||.|++||+++.....       ...++...+
T Consensus       154 ~s~d~~-i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~v  221 (293)
T d1p22a2         154 ASGDRT-IKVWNTSTCE-FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLR-------VLEGHEELV  221 (293)
T ss_dssp             EETTSE-EEEEETTTCC-EEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEE-------EECCCSSCE
T ss_pred             ccCCCc-eeeecCCCCc-EEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccceeee-------eecccceee
Confidence            888887 9999999865 4788888888888887763   489999999999999999876443       556677777


Q ss_pred             eEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          228 EQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ..+  ++++..+++++.|+.|++|++
T Consensus       222 ~~~--~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         222 RCI--RFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             EEE--ECCSSEEEEEETTSCEEEEEH
T ss_pred             eec--cccceEEEEEcCCCEEEEEEC
Confidence            654  455667899999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.7e-25  Score=167.32  Aligned_cols=151  Identities=15%  Similarity=0.274  Sum_probs=123.8

Q ss_pred             EEecCCCCCEEEEEeCCC-eEEEEeccCceeeeeee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec
Q 035558           48 FDWNEAEPRRIGTSSIDT-TCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE  124 (253)
Q Consensus        48 ~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  124 (253)
                      .+++ ++++.+++++.++ .+++|++...+....+. .|..++++++|+ ++.+|++|+.||.|++||+.+++..  ...
T Consensus       124 ~~~~-~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~  200 (287)
T d1pgua2         124 SAVS-LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK--TSR  200 (287)
T ss_dssp             EEEE-ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--ECC
T ss_pred             eeee-ccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc--ccc
Confidence            3445 4567777777665 79999998766555444 477899999999 9999999999999999999887632  223


Q ss_pred             cCCCCCCeeEEEeeCC---------CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecC
Q 035558          125 SSEPDTPLVRLGWNKQ---------DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGD  195 (253)
Q Consensus       125 ~~~~~~~i~~~~~~~~---------~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  195 (253)
                      ...|..+|.+++|+|.         ++.++++|+.|+. |++||+++....+..+.+|...|++++|+|++  .|++++.
T Consensus       201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g~  277 (287)
T d1pgua2         201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGA  277 (287)
T ss_dssp             SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTSSTTCEEEEEEEETT--EEEEEET
T ss_pred             ccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEeCCCCCCeEEEEECCCC--EEEEEEC
Confidence            4567779999999873         4578999999998 99999988666678888999999999999986  6889999


Q ss_pred             CCcEEEEec
Q 035558          196 DSQALIWDL  204 (253)
Q Consensus       196 dg~i~iwd~  204 (253)
                      |++|++|++
T Consensus       278 D~~v~iW~i  286 (287)
T d1pgua2         278 DACIKRWNV  286 (287)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=6.2e-25  Score=174.61  Aligned_cols=234  Identities=16%  Similarity=0.108  Sum_probs=165.3

Q ss_pred             eEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee--ee-
Q 035558            7 LLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT--QL-   81 (253)
Q Consensus         7 ~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~-   81 (253)
                      ++++.++  +|+|||+.++    +.+.++..|.      .+..++|+ |+++++++++.|++|++||+.+++...  .+ 
T Consensus        34 ~~V~~~~dg~v~vwD~~t~----~~~~~l~~g~------~~~~vafS-PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSK----KIVKVIDTGY------AVHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             EEEEETTTTEEEEEETTTC----SEEEEEECCS------SEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC----cEEEEEeCCC------CeeEEEEC-CCCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            3465654  9999999998    8888998875      58899999 899999999999999999999886433  22 


Q ss_pred             --ecccccEEEEEec-CCCeEE-EEeCCCcEEEEEcCCCCCeeeeec---------------------------------
Q 035558           82 --IAHDKEVYDIAWG-GVGVFA-SVSADGSVRVFDLRDKEHSTIIYE---------------------------------  124 (253)
Q Consensus        82 --~~~~~~v~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~---------------------------------  124 (253)
                        .+|...+.+++|+ ++++++ ++..++.+++||..+.........                                 
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence              3566777788888 888764 455899999999887643211100                                 


Q ss_pred             -------------------cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC---------------------
Q 035558          125 -------------------SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT---------------------  164 (253)
Q Consensus       125 -------------------~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---------------------  164 (253)
                                         .......+..++|+| ++++++++..+...+.+++..+..                     
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH  261 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred             CCCeEEEEEeccccceeeEEeccCCccEeeeECC-CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeec
Confidence                               001122456788888 777777776655556666654321                     


Q ss_pred             --------------------------------CCeeeecccccceeEEEEecCCCCeEEE-------ecCCCcEEEEecc
Q 035558          165 --------------------------------LPVVELQRHQASVNAIAWAPHSSCHICT-------AGDDSQALIWDLS  205 (253)
Q Consensus       165 --------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~  205 (253)
                                                      +....+.+|...+..++|+|++ ++|++       ++.|++|+|||++
T Consensus       262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECC
Confidence                                            1123456677889999999999 68884       5568999999999


Q ss_pred             CCCCCCCCC--CCCeeeccCCCceeEEEEcCCCCceEEE-----EcCCcEEEEEC
Q 035558          206 SMGQPVEGG--LDPILAYTAGAEIEQLQWSSSQPDWVAI-----AFSTKLQILRV  253 (253)
Q Consensus       206 ~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~i~vw~l  253 (253)
                      +++......  ........|...+..++|+|+|++++.+     +.++.|+||+.
T Consensus       341 t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         341 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             CTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             CCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence            887543000  0001123567789999999999977533     24677999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.7e-25  Score=171.15  Aligned_cols=231  Identities=12%  Similarity=-0.001  Sum_probs=163.1

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   79 (253)
                      |+++.+|++|+ | .|++|++...    ........+..    .......+. ++...+++++.++.+++||++......
T Consensus        66 ~~~~~~l~sg~~d~~v~~w~~~~~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~  136 (342)
T d1yfqa_          66 DNTDLQIYVGTVQGEILKVDLIGS----PSFQALTNNEA----NLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGV  136 (342)
T ss_dssp             ESSSEEEEEEETTSCEEEECSSSS----SSEEECBSCCC----CSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBC
T ss_pred             CCCCCEEEEcccccceeeeecccc----ccccccccccc----ccccccccc-cccccccccccccccceeeccccccce
Confidence            55677888887 5 9999999886    44444444441    223334444 678899999999999999987654322


Q ss_pred             ee----ecc--cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558           80 QL----IAH--DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus        80 ~~----~~~--~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      ..    ..+  ......+.+. .+..+++++.|+.|++||++.................+.+..+.+.++..+++++.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  216 (342)
T d1yfqa_         137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             EEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             eeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCC
Confidence            22    222  2233445556 8889999999999999999987755444444444456777777776888999999999


Q ss_pred             CeEEEEECCCCCCC--------------eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCe
Q 035558          153 AKVVVLDIRFPTLP--------------VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPI  218 (253)
Q Consensus       153 ~~i~~~d~~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  218 (253)
                      . +.+|+.......              ......|...+++++|+|++ .+|++|+.||.|++||+++.+...       
T Consensus       217 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~~l~-------  287 (342)
T d1yfqa_         217 R-VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIK-------  287 (342)
T ss_dssp             E-EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEE-------
T ss_pred             e-EEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCcEEE-------
Confidence            8 999988654321              11123466689999999999 599999999999999999876432       


Q ss_pred             eeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          219 LAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       219 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      . ..+...+..++|+|+++.+++++.|+.+++|
T Consensus       288 ~-~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         288 N-FAKFNEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             E-CCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             E-ecCCCCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence            2 2233445567778888888888888766555

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=7.2e-24  Score=163.87  Aligned_cols=188  Identities=11%  Similarity=0.074  Sum_probs=154.8

Q ss_pred             eEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCC--cEEEEEcCCCCCeeee
Q 035558           46 TSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADG--SVRVFDLRDKEHSTII  122 (253)
Q Consensus        46 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  122 (253)
                      ..-.|||.+++++++++ +|.|++||++.++.++.  +|...|.+++|+ +++.|++++.+.  .|++||.++++..   
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---   79 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---   79 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---
Confidence            45679955999999887 57999999998876653  589999999999 999988776553  7999999987632   


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe---------
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA---------  193 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~---------  193 (253)
                       ....+...+.+++|+| ++++|++++.++. +++|++.+... ...+..|...+.+++|+|+| ++|+.+         
T Consensus        80 -~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~  154 (360)
T d1k32a3          80 -KFEENLGNVFAMGVDR-NGKFAVVANDRFE-IMTVDLETGKP-TVIERSREAMITDFTISDNS-RFIAYGFPLKHGETD  154 (360)
T ss_dssp             -ECCCCCCSEEEEEECT-TSSEEEEEETTSE-EEEEETTTCCE-EEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTC
T ss_pred             -EeeCCCceEEeeeecc-cccccceeccccc-cccccccccce-eeeeecccccccchhhccce-eeeeeecccccccee
Confidence             2345667999999999 9999999999998 99999987663 67777888899999999999 577743         


Q ss_pred             -cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          194 -GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       194 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                       ..++.+++||+.+.+.        .....+...+..++|+|+|+.++.++.++.+++|+
T Consensus       155 ~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         155 GYVMQAIHVYDMEGRKI--------FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             SCCEEEEEEEETTTTEE--------EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             eccccceeeeccccCce--------eeecccccccccccccCCCCEEEEEeCCCceEccc
Confidence             3456799999987642        34556778889999999999999999999998886

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=9.4e-22  Score=150.41  Aligned_cols=221  Identities=12%  Similarity=0.038  Sum_probs=160.6

Q ss_pred             ceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeeee
Q 035558            6 DLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQLI   82 (253)
Q Consensus         6 ~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~   82 (253)
                      +++++++ + +|++||+.+.    +.+..+..+...   ..+.+++|+ |+++++ ++++.++.|.+||+.+++.+..+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~----~~~~~i~~~~~~---~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~   73 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM----AVDKVITIADAG---PTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT----EEEEEEECTTCT---TCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCC----eEEEEEECCCCC---CCccEEEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            5677777 4 9999999997    777777654311   457799999 888877 566789999999999999888776


Q ss_pred             ccc-----ccEEEEEec-CCCeEEEEe------------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCE
Q 035558           83 AHD-----KEVYDIAWG-GVGVFASVS------------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRY  144 (253)
Q Consensus        83 ~~~-----~~v~~~~~~-~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  144 (253)
                      .+.     ..+..++|+ +++.++++.            .+..+.+||..+.+....+..    ...+..++|+| ++.+
T Consensus        74 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~~  148 (337)
T d1pbyb_          74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWAR-DGSK  148 (337)
T ss_dssp             CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECT-TSSC
T ss_pred             cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc----cCCceEEEEcC-CCCE
Confidence            543     334578899 888887776            467888999988874444332    23677899999 8888


Q ss_pred             EEEEEeCCCeEEEEECCCCCC-----------------------------------------------------------
Q 035558          145 MATIIMDSAKVVVLDIRFPTL-----------------------------------------------------------  165 (253)
Q Consensus       145 l~~~~~~~~~i~~~d~~~~~~-----------------------------------------------------------  165 (253)
                      +++++.+   +.+||..+.+.                                                           
T Consensus       149 l~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         149 LYGLGRD---LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             EEEESSS---EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEcCC---cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            8887643   77787754321                                                           


Q ss_pred             ------CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce
Q 035558          166 ------PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW  239 (253)
Q Consensus       166 ------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  239 (253)
                            ....+..+...+..++++|++ .+++.+  ++.|++||+.+.+..        ....+...+.+++|+|+|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~~~--------~~~~~~~~~~~~~~s~dG~~l  294 (337)
T d1pbyb_         226 LETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASI--------KRVPLPHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEE--------EEEECSSCCCEEEECTTSCEE
T ss_pred             cCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCCCcEE--------EEEcCCCCEEEEEECCCCCEE
Confidence                  000111233345556677777 466554  589999999987643        333466788999999999999


Q ss_pred             EEEEcCCcEEEEEC
Q 035558          240 VAIAFSTKLQILRV  253 (253)
Q Consensus       240 ~~~~~~~~i~vw~l  253 (253)
                      ++++.++.|+||++
T Consensus       295 ~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         295 WLGGALGDLAAYDA  308 (337)
T ss_dssp             EEESBSSEEEEEET
T ss_pred             EEEeCCCcEEEEEC
Confidence            99999999999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=2.3e-20  Score=140.50  Aligned_cols=224  Identities=10%  Similarity=0.104  Sum_probs=163.6

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCC-EEEEEeCCCeEEEEeccCceee
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPR-RIGTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~   78 (253)
                      |+...++++++ + .|++||+.++    +.+..+..+.      .+..+.|+ +++. .++++..++.+.+|+..+++..
T Consensus        41 pdG~~l~v~~~~~~~i~v~d~~t~----~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (301)
T d1l0qa2          41 PDGTKVYVANAHSNDVSIIDTATN----NVIATVPAGS------SPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVA  109 (301)
T ss_dssp             TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECSS------SEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCC----ceeeeeeccc------cccccccc-cccccccccccccceeeecccccceee
Confidence            44444555655 3 9999999987    7777887775      46789999 5665 4556667789999999999888


Q ss_pred             eeeecccccEEEEEec-CCCeE-EEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEE
Q 035558           79 TQLIAHDKEVYDIAWG-GVGVF-ASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVV  156 (253)
Q Consensus        79 ~~~~~~~~~v~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~  156 (253)
                      ..+.. ...+.++.|+ ++..+ +++..++.+.+|+..+......+..    ...+..++++| ++..+++++.+...+.
T Consensus       110 ~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~  183 (301)
T d1l0qa2         110 GTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV----GRSPKGIAVTP-DGTKVYVANFDSMSIS  183 (301)
T ss_dssp             EEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----CSSEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             eeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc----CCCceEEEeec-cccceeeecccccccc
Confidence            87774 4567888999 77765 5566788899999998874443322    22678899999 8888888887776577


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe---cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEc
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA---GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWS  233 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  233 (253)
                      +|+..... ...... ....+..++|++++. .++.+   ..++.|++||+.+++..        ....+...+.+++|+
T Consensus       184 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~-~~~v~~~~~~~~~v~v~D~~t~~~~--------~~~~~~~~~~~va~s  252 (301)
T d1l0qa2         184 VIDTVTNS-VIDTVK-VEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTGTNKIT--------ARIPVGPDPAGIAVT  252 (301)
T ss_dssp             EEETTTTE-EEEEEE-CSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETTTTEEE--------EEEECCSSEEEEEEC
T ss_pred             ccccccee-eeeccc-ccCCcceeecccccc-ccccccccceeeeeeeeecCCCeEE--------EEEcCCCCEEEEEEe
Confidence            77776543 233333 345678899999995 55443   34578999999887632        223345678999999


Q ss_pred             CCCCceE-EEEcCCcEEEEEC
Q 035558          234 SSQPDWV-AIAFSTKLQILRV  253 (253)
Q Consensus       234 ~~~~~~~-~~~~~~~i~vw~l  253 (253)
                      |+|++++ +++.++.|++|++
T Consensus       253 pdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         253 PDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEECCCCeEEEEEC
Confidence            9999764 6677899999985

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=7.9e-21  Score=150.85  Aligned_cols=232  Identities=11%  Similarity=-0.032  Sum_probs=160.8

Q ss_pred             EEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee--eeee--
Q 035558            8 LATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV--DTQL--   81 (253)
Q Consensus         8 l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~--   81 (253)
                      +++.++  +|.|||..++    +++..+..+.      .+..++|+ |+++++++++.|+.|++||+.+++.  ...+  
T Consensus        35 ~v~~~d~g~v~v~D~~t~----~v~~~~~~g~------~~~~v~fS-pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTY----EIKTVLDTGY------AVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             EEEETTTTEEEEEETTTC----CEEEEEECSS------CEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCC----cEEEEEeCCC------CeeEEEEC-CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            466665  9999999998    8888988775      58899999 8999999999999999999987763  2222  


Q ss_pred             -ecccccEEEEEec-CCCeE-EEEeCCCcEEEEEcCCCCCeeeeecc--------CCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           82 -IAHDKEVYDIAWG-GVGVF-ASVSADGSVRVFDLRDKEHSTIIYES--------SEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        82 -~~~~~~v~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                       ..|.+.+.+..|+ ++++| ++++.++.|++||..+++........        ..+......+.++| ++..++++..
T Consensus       104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~  182 (432)
T d1qksa2         104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVK  182 (432)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEET
T ss_pred             CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEc
Confidence             3566667777788 88875 77888999999999998755443321        12334667788999 6766665555


Q ss_pred             CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe-cCCCcEEEEeccCCCCCCC---------CC------
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA-GDDSQALIWDLSSMGQPVE---------GG------  214 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~---------~~------  214 (253)
                      +...|.+||..+.+........+...+..++|+|+| ++++++ ..++.+.++|....+....         ..      
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~  261 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV  261 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCC-CEEEEeccccceEEEeecccceEEEEeccCccccccCccccee
Confidence            444499999887553222222345678899999999 555544 4667888888876542100         00      


Q ss_pred             ----------------------CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          215 ----------------------LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       215 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                                            ..+.....|...+....++|++..+++++.++..++|.
T Consensus       262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~  321 (432)
T d1qksa2         262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  321 (432)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             cCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceee
Confidence                                  00011112334566777788777677777777777774

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=6.5e-20  Score=140.05  Aligned_cols=232  Identities=13%  Similarity=0.099  Sum_probs=150.8

Q ss_pred             EEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccCceeeeeee--
Q 035558            8 LATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIEREAVDTQLI--   82 (253)
Q Consensus         8 l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~--   82 (253)
                      +++++ + +|++|+++.. ...+.++.+ .|.     +.+..++|+ |++++|++++ .|+.|++|++........+.  
T Consensus         7 ~v~~~~~~~I~v~~~~~~-~~l~~~~~~-~~~-----~~v~~la~s-pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~   78 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHE-GALTLTQVV-DVP-----GQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE   78 (333)
T ss_dssp             EEEEGGGTEEEEEEECTT-SCEEEEEEE-ECS-----SCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCC-CCeEEEEEE-cCC-----CCEeEEEEe-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee
Confidence            35554 4 9999999864 333434443 344     678999999 8999885554 58999999997664333222  


Q ss_pred             -cccccEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           83 -AHDKEVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        83 -~~~~~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                       .+...+..++|+ +++++++++. ++.+.+|+............ ..+...+.++.++| +++++++++.....+.+|+
T Consensus        79 ~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          79 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISP-DNRTLWVPALKQDRICLFT  156 (333)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEE
T ss_pred             cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccc-cCCCccceEEEeee-cceeeeccccccceeeEEE
Confidence             244567789999 9998888875 67899998876653333322 23333667788888 7777777776665577777


Q ss_pred             CCCCCCCee----------------------------------------------------eec------ccccceeEEE
Q 035558          160 IRFPTLPVV----------------------------------------------------ELQ------RHQASVNAIA  181 (253)
Q Consensus       160 ~~~~~~~~~----------------------------------------------------~~~------~~~~~i~~~~  181 (253)
                      .........                                                    ...      ........++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             eccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            654321000                                                    000      0112345577


Q ss_pred             EecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEEC
Q 035558          182 WAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILRV  253 (253)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~l  253 (253)
                      +++++..+++++..++.+.+|++.......    ...........+.+++|+|+|+++++++ .++.|++|++
T Consensus       237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         237 ITPDGRHLYACDRTASLITVFSVSEDGSVL----SKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCE----EEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             EecccCceeeecccCCeEEEEEEcCCCCEE----EEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            888885455566778899999887654332    0112223456678999999999877665 4688999963

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=4.8e-20  Score=141.25  Aligned_cols=228  Identities=8%  Similarity=-0.028  Sum_probs=152.5

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecC-CCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNG-NKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVD   78 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~   78 (253)
                      +++++|++++.  +|.+||+.++    +.+.+++. +.     ..+.+++|+ |+++++ +++..++.|++||+.+++.+
T Consensus         6 ~~~~~l~~~~~~~~v~v~D~~t~----~~~~t~~~~~~-----~~p~~l~~s-pDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           6 AGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDK-----FGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSC-----CSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCC----CEEEEEEcCCC-----CCcceEEEC-CCCCEEEEEECCCCcEEEEeCccCeee
Confidence            46788888874  9999999997    88887764 34     567899999 888876 56668899999999999877


Q ss_pred             eeeecc------cccEEEEEec-CCCeEEEEe------------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeC
Q 035558           79 TQLIAH------DKEVYDIAWG-GVGVFASVS------------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNK  139 (253)
Q Consensus        79 ~~~~~~------~~~v~~~~~~-~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~  139 (253)
                      ..+...      ...+..++|+ +++++++++            .++.+.+||..+++....+...... ..+..+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  154 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAAD  154 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc-CceEEEEecC
Confidence            766522      2345678999 888887664            4677888988765432222111110 0122222222


Q ss_pred             CCCCEEEE----------------------------------------------------------------EEeCCCeE
Q 035558          140 QDPRYMAT----------------------------------------------------------------IIMDSAKV  155 (253)
Q Consensus       140 ~~~~~l~~----------------------------------------------------------------~~~~~~~i  155 (253)
                       ++.+++.                                                                +..... +
T Consensus       155 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  232 (346)
T d1jmxb_         155 -DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG-Y  232 (346)
T ss_dssp             -TSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE-E
T ss_pred             -CCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce-E
Confidence             2222111                                                                111222 4


Q ss_pred             EEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          156 VVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       156 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      .+||+.+..........|...+..+.+++++. +++... ++.|.+||..+++..        ....+...+.+++|+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~~~~~~--------~~~~~~~~~~~va~s~D  302 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLKQRKLI--------KAANLDHTYYCVAFDKK  302 (346)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE-ESEEEEEETTTTEEE--------EEEECSSCCCEEEECSS
T ss_pred             EEEECCCCceEEEEeecccceeEEEEEeCCCC-EEEEec-CCeEEEEECCCCcEE--------EEEcCCCCEEEEEEcCC
Confidence            55555554432334445666778888888884 666555 467999999887532        33345567999999999


Q ss_pred             CCceEEEEcCCcEEEEEC
Q 035558          236 QPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       236 ~~~~~~~~~~~~i~vw~l  253 (253)
                      |+++++++.++.|++|++
T Consensus       303 G~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         303 GDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             SSCEEEESBSSEEEEEET
T ss_pred             CCEEEEEeCCCcEEEEEC
Confidence            999999999999999985

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.3e-20  Score=149.67  Aligned_cols=187  Identities=17%  Similarity=0.072  Sum_probs=141.2

Q ss_pred             CEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee--eeccCCCCCCe
Q 035558           56 RRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI--IYESSEPDTPL  132 (253)
Q Consensus        56 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~i  132 (253)
                      -++++.+.+|+|.+||.++++.+..+..+. .+..++|+ +++++++++.|+++++||+.+.+....  +.....+.+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            345899999999999999999999998764 68999999 999999999999999999988764322  23333344456


Q ss_pred             eEEEeeCCCCCEEE-EEEeCCCeEEEEECCCCCCCeeeecc-----------cccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          133 VRLGWNKQDPRYMA-TIIMDSAKVVVLDIRFPTLPVVELQR-----------HQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       133 ~~~~~~~~~~~~l~-~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      .+..|+| ++++++ ++..++. |++||..+.+ ++..+..           +......+.++|++..++++...++.|.
T Consensus       112 ~s~~~Sp-DG~~l~vs~~~~~~-v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         112 TSKMEGW-EDKYAIAGAYWPPQ-YVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             ECCSTTC-TTTEEEEEEEETTE-EEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             EecccCC-CCCEEEEEcCCCCe-EEEEeCcccc-ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            6677888 888765 5555665 9999998765 3444433           2345667899999965667888899999


Q ss_pred             EEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc-CCcEEEEE
Q 035558          201 IWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF-STKLQILR  252 (253)
Q Consensus       201 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~vw~  252 (253)
                      +||....+...      .....+...+..++|+|+++++++++. ++.+.+++
T Consensus       189 ~~d~~~~~~~~------~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d  235 (432)
T d1qksa2         189 LVDYTDLNNLK------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVID  235 (432)
T ss_dssp             EEETTCSSEEE------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             EEEccCCCcce------EEEEcccCccccceECCCCCEEEEeccccceEEEee
Confidence            99988765332      234456778899999999998776654 45566655

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=1.6e-18  Score=130.28  Aligned_cols=217  Identities=11%  Similarity=0.095  Sum_probs=157.9

Q ss_pred             Eeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEE-EEEeCCCeEEEEeccCceeeeeeeccc
Q 035558            9 ATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRI-GTSSIDTTCTIWDIEREAVDTQLIAHD   85 (253)
Q Consensus         9 ~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~   85 (253)
                      ++.+ + +|.+||+.++    +.+.++....      .+..++|+ |++++| ++++.++.|++||+.+++.+..+..+.
T Consensus         6 V~~~~~~~v~v~D~~t~----~~~~~i~~g~------~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~   74 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN----KVTATIPVGS------NPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (301)
T ss_dssp             EEETTTTEEEEEETTTT----EEEEEEECSS------SEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEECCCCEEEEEECCCC----eEEEEEECCC------CceEEEEe-CCCCEEEEEECCCCEEEEEECCCCceeeeeeccc
Confidence            3443 4 9999999997    7777776553      46799999 888876 567788999999999999998888665


Q ss_pred             ccEEEEEec-CCCe-EEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCC
Q 035558           86 KEVYDIAWG-GVGV-FASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFP  163 (253)
Q Consensus        86 ~~v~~~~~~-~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  163 (253)
                       .+..++|+ ++.. ++++..++.+.+|+..+++....+..    .....++.|+| ++..+++++..+..+.+|+..+.
T Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT----GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT
T ss_pred             -cccccccccccccccccccccceeeecccccceeeeeccc----cccceEEEeec-CCCeeeeeeccccceeeeecccc
Confidence             46889999 6664 55666788999999998864444422    23678899999 77777666655555999999876


Q ss_pred             CCCeeeecccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEE
Q 035558          164 TLPVVELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAI  242 (253)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  242 (253)
                      .. ...+. +...+..++++|++. .+++++ .++.+.+|+......        .........+..++|++++..++.+
T Consensus       149 ~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~v~  217 (301)
T d1l0qa2         149 AV-INTVS-VGRSPKGIAVTPDGT-KVYVANFDSMSISVIDTVTNSV--------IDTVKVEAAPSGIAVNPEGTKAYVT  217 (301)
T ss_dssp             EE-EEEEE-CCSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEE--------EEEEECSSEEEEEEECTTSSEEEEE
T ss_pred             ce-eeecc-cCCCceEEEeecccc-ceeeecccccccccccccceee--------eecccccCCcceeeccccccccccc
Confidence            53 44444 345678899999984 665555 456677777665432        2334455678899999999877655


Q ss_pred             Ec---CCcEEEEEC
Q 035558          243 AF---STKLQILRV  253 (253)
Q Consensus       243 ~~---~~~i~vw~l  253 (253)
                      +.   ++.+++|++
T Consensus       218 ~~~~~~~~v~v~D~  231 (301)
T d1l0qa2         218 NVDKYFNTVSMIDT  231 (301)
T ss_dssp             EECSSCCEEEEEET
T ss_pred             cccceeeeeeeeec
Confidence            43   357999974

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=1.7e-18  Score=137.06  Aligned_cols=188  Identities=14%  Similarity=0.093  Sum_probs=131.6

Q ss_pred             CEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee--eeccCCCCCCe
Q 035558           56 RRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI--IYESSEPDTPL  132 (253)
Q Consensus        56 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~i  132 (253)
                      -++++.+.||+|++||+.+++.+..+..|. .+..++|+ +++++++++.|++|++||+.+.+....  +.....+...+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            356788899999999999999999998764 58999999 999999999999999999998875432  22233444466


Q ss_pred             eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee-----------EEEEecCCCCeEEEecCCCcEEE
Q 035558          133 VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN-----------AIAWAPHSSCHICTAGDDSQALI  201 (253)
Q Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~~l~~~~~dg~i~i  201 (253)
                      .+++|+| +++++++++.....+.+||..... +...+..|...+.           .+.+++++..++.+....+.+.+
T Consensus       112 ~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         112 SSKFKGY-EDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             ECCSTTC-TTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EeeeecC-CCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            7778889 888877766554459999998865 3555555544443           44455555322233333445555


Q ss_pred             EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEc-CCcEEEEE
Q 035558          202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAF-STKLQILR  252 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~vw~  252 (253)
                      ++........      ....++...+..++|+|++++++++.. ++.+.+++
T Consensus       190 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~  235 (426)
T d1hzua2         190 VNYKDIDNLT------VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVID  235 (426)
T ss_dssp             EECSSSSSCE------EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEE
T ss_pred             EEecccccee------eEEeccCCccEeeeECCCCcEEEeeeecccceeeee
Confidence            5544433222      345578888999999999998776654 45566654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=3.5e-17  Score=124.58  Aligned_cols=192  Identities=11%  Similarity=0.074  Sum_probs=136.1

Q ss_pred             CCce-EEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe------------CCCeEE
Q 035558            4 KPDL-LATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS------------IDTTCT   68 (253)
Q Consensus         4 ~~~~-l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~   68 (253)
                      +|++ +++++ + .|.+||+.++    +.+..+..+........+..++|+ +++++++++.            .+..+.
T Consensus        44 Dg~~l~v~~~~~~~v~v~D~~t~----~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~  118 (337)
T d1pbyb_          44 GGRIAYATVNKSESLVKIDLVTG----ETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTC----CEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred             CCCEEEEEECCCCeEEEEECCCC----cEEEEEecCCCcccccceeeEEEc-CCCcEEEEeecCCcceeeecccccccee
Confidence            4554 45655 4 9999999997    777777766543333566789999 8888888775            457889


Q ss_pred             EEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec-----------------------
Q 035558           69 IWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE-----------------------  124 (253)
Q Consensus        69 vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------------------  124 (253)
                      +||..+++....+.. ...+..++|+ +++++++++.+  +.+||..+.+....+..                       
T Consensus       119 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (337)
T d1pbyb_         119 LYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS  195 (337)
T ss_dssp             EEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred             eccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecccccc
Confidence            999999988877764 4567889999 99999988754  67788766432111100                       


Q ss_pred             ----------------------------------------cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCC
Q 035558          125 ----------------------------------------SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPT  164 (253)
Q Consensus       125 ----------------------------------------~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  164 (253)
                                                              ...+...+..+.++| ++.+++.+  ++. |++||+.+.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~-i~v~d~~~~~  271 (337)
T d1pbyb_         196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNV-LESFDLEKNA  271 (337)
T ss_dssp             TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESE-EEEEETTTTE
T ss_pred             ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--ccc-EEEEECCCCc
Confidence                                                    000112344455666 56666554  355 9999999866


Q ss_pred             CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          165 LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      . +..+. +...+.+++|+|+| ++|++++.|++|++||.++.+..
T Consensus       272 ~-~~~~~-~~~~~~~~~~s~dG-~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         272 S-IKRVP-LPHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             E-EEEEE-CSSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCCEE
T ss_pred             E-EEEEc-CCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEE
Confidence            3 55543 56678999999999 69999999999999999987743

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.1e-16  Score=123.16  Aligned_cols=217  Identities=11%  Similarity=0.061  Sum_probs=142.9

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEE----------eCCCeEEEEeccCceeeeeeec
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTS----------SIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .|.+||..++    +.+.++..+.       ...++|+ |++++|+++          ..|+.|++||..+++.+..+..
T Consensus        29 ~v~v~D~~tg----~~~~~~~~g~-------~~~~a~S-pDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~   96 (355)
T d2bbkh_          29 QQFVIDGEAG----RVIGMIDGGF-------LPNPVVA-DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL   96 (355)
T ss_dssp             EEEEEETTTT----EEEEEEEECS-------SCEEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             eEEEEECCCC----cEEEEEECCC-------CCceEEc-CCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEec
Confidence            7999999997    7777777654       3379999 899888764          3478999999999987776653


Q ss_pred             ccc-------cEEEEEec-CCCeEEEEe--CCCcEEEEEcCCCCCeeeeecc----------------------------
Q 035558           84 HDK-------EVYDIAWG-GVGVFASVS--ADGSVRVFDLRDKEHSTIIYES----------------------------  125 (253)
Q Consensus        84 ~~~-------~v~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~----------------------------  125 (253)
                      +..       ....++|+ +++.++.+.  .+..+.+||..+.+....+...                            
T Consensus        97 ~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~  176 (355)
T d2bbkh_          97 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG  176 (355)
T ss_dssp             TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEec
Confidence            322       23457888 888777664  4678899998876532221100                            


Q ss_pred             --------------CCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCe-eeeccc----------ccceeEE
Q 035558          126 --------------SEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPV-VELQRH----------QASVNAI  180 (253)
Q Consensus       126 --------------~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~----------~~~i~~~  180 (253)
                                    ..+...+....+.+ ++..++.++.++. +++|++....... .....+          ......+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  254 (355)
T d2bbkh_         177 TEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGK-IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV  254 (355)
T ss_dssp             SSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSE-EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCE
T ss_pred             CCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCe-EEEEecCCCcEEEEeccCCcccceEeeeeeccceEEE
Confidence                          00111233345555 5666777777776 9999988754211 111111          1233558


Q ss_pred             EEecCCCCeEEEecCC----------CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc-eE-EEEcCCcE
Q 035558          181 AWAPHSSCHICTAGDD----------SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD-WV-AIAFSTKL  248 (253)
Q Consensus       181 ~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~~~~~i  248 (253)
                      +++|++. .++....+          ..|.+||..+++..        ....+...+.+++|+|+|+. ++ +++.++.|
T Consensus       255 ~~~~d~~-~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~--------~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i  325 (355)
T d2bbkh_         255 AYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGERL--------AKFEMGHEIDSINVSQDEKPLLYALSTGDKTL  325 (355)
T ss_dssp             EEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--------EEEEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             EEeCCCC-eEEEEeccCCceeecCCCCeEEEEeCCCCcEE--------EEecCCCCEEEEEEcCCCCeEEEEEECCCCEE
Confidence            8899984 55544332          47999999987632        22334567899999999984 33 55668999


Q ss_pred             EEEEC
Q 035558          249 QILRV  253 (253)
Q Consensus       249 ~vw~l  253 (253)
                      ++|++
T Consensus       326 ~v~D~  330 (355)
T d2bbkh_         326 YIHDA  330 (355)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=6.9e-15  Score=113.72  Aligned_cols=212  Identities=8%  Similarity=-0.032  Sum_probs=135.1

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .|.+||..++    +.+.++..+.     .+  .++|+ |++++|+++.          .++.|.+||..+++.+..+..
T Consensus        48 ~v~v~D~~tg----~~~~~~~~~~-----~~--~~a~S-pDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~  115 (373)
T d2madh_          48 QQWVLDAGSG----SILGHVNGGF-----LP--NPVAA-HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL  115 (373)
T ss_pred             eEEEEECCCC----CEEEEEeCCC-----Cc--cEEEc-CCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec
Confidence            6889998887    7777777665     33  68999 8999998874          457899999999998877765


Q ss_pred             ccccE-------EEEEec-CCCeEEEE--eCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC
Q 035558           84 HDKEV-------YDIAWG-GVGVFASV--SADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA  153 (253)
Q Consensus        84 ~~~~v-------~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  153 (253)
                      +....       ..+.|+ +++.++..  ..++.+.+|+....+.....       ....++.++|.....+++.+.++.
T Consensus       116 ~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~  188 (373)
T d2madh_         116 PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGG  188 (373)
T ss_pred             CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCe
Confidence            54433       345677 66655444  34567788887765422111       134566777733344456666666


Q ss_pred             eEEEEECCCCCCCe------------------------------------------------eeeccc----------cc
Q 035558          154 KVVVLDIRFPTLPV------------------------------------------------VELQRH----------QA  175 (253)
Q Consensus       154 ~i~~~d~~~~~~~~------------------------------------------------~~~~~~----------~~  175 (253)
                       +.+||........                                                .....+          ..
T Consensus       189 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (373)
T d2madh_         189 -LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG  267 (373)
T ss_pred             -EEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccC
Confidence             7777765432100                                                000000          01


Q ss_pred             ceeEEEEecCCC---------CeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce--EEEEc
Q 035558          176 SVNAIAWAPHSS---------CHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW--VAIAF  244 (253)
Q Consensus       176 ~i~~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~  244 (253)
                      ....++++|++.         ..+++...++.+.+||..+++..        ....+...+..++|+|+|+.+  ++.+.
T Consensus       268 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~--------~~~~~~~~~~~~a~spDG~~~l~vt~~~  339 (373)
T d2madh_         268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS--------SQISLGHDVDAISVAQDGGPDLYALSAG  339 (373)
T ss_pred             cceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEE--------EEecCCCCeeEEEECCCCCEEEEEEeCC
Confidence            112234555542         13344556678889998887632        344567789999999999853  46788


Q ss_pred             CCcEEEEEC
Q 035558          245 STKLQILRV  253 (253)
Q Consensus       245 ~~~i~vw~l  253 (253)
                      ++.|++||+
T Consensus       340 d~~v~v~D~  348 (373)
T d2madh_         340 TEVLHIYDA  348 (373)
T ss_pred             CCeEEEEEC
Confidence            999999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4.3e-16  Score=118.50  Aligned_cols=193  Identities=9%  Similarity=0.119  Sum_probs=131.6

Q ss_pred             EEEEEeCCCeEEEEeccCceeeeee--ecccccEEEEEec-CCCeEEEE-eCCCcEEEEEcCCCCCeeeeeccCCCCCCe
Q 035558           57 RIGTSSIDTTCTIWDIEREAVDTQL--IAHDKEVYDIAWG-GVGVFASV-SADGSVRVFDLRDKEHSTIIYESSEPDTPL  132 (253)
Q Consensus        57 ~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i  132 (253)
                      .+++++.|++|++|++.....+..+  ..|.+.+..|+|+ ++++|+++ ..|+.|++|++..................+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4578889999999999765433322  2578899999999 99988555 458999999998765443333222333367


Q ss_pred             eEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-CeeeecccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCC
Q 035558          133 VRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQP  210 (253)
Q Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~  210 (253)
                      ..++|+| +++++++++.++..+.+|+...... .......+...+.++.++|++ +++++++ .+..|.+|+.......
T Consensus        86 ~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          86 THISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             SEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             eEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc-eeeeccccccceeeEEEeccCCcc
Confidence            7899999 9999999988776699998876442 123334466678899999999 4655554 6678999998775432


Q ss_pred             CCCCCCCeeeccCCCceeEEEEcCCCCceEEEE-cCCcEEEEE
Q 035558          211 VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA-FSTKLQILR  252 (253)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~vw~  252 (253)
                      ... ...............++|++++..++... ..+...+++
T Consensus       164 ~~~-~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~  205 (333)
T d1ri6a_         164 VAQ-DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  205 (333)
T ss_dssp             EEE-EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eee-eceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence            200 00112233456678899999988666544 444555554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=2.7e-13  Score=103.73  Aligned_cols=207  Identities=11%  Similarity=0.050  Sum_probs=131.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCcc--ccCCeeEEEecCCCCCEEEEEe--CCCeEEEEeccCceeeeeeeccc----
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSE--YCGPLTSFDWNEAEPRRIGTSS--IDTTCTIWDIEREAVDTQLIAHD----   85 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~----   85 (253)
                      .|++||+.++    +....+..+....  .......++|+ +++++++.+.  .+..+.+|+..+++.+..+..+.    
T Consensus        79 ~v~v~D~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          79 YVEVFDPVTL----LPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             EEEEECTTTC----CEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EEEEEECCCC----CEEEEEecCCcceeecCCCCceEEEe-cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            7999999987    6555554433111  11234578899 8888877664  45688999998876554433211    


Q ss_pred             -----------------------------------------ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558           86 -----------------------------------------KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY  123 (253)
Q Consensus        86 -----------------------------------------~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  123 (253)
                                                               ..+....+. ++..++.++.++.+++|++..+.......
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  233 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA  233 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEec
Confidence                                                     011222344 55567888889999999998775321111


Q ss_pred             cc---------CCCCCCeeEEEeeCCCCCEEEEEEeCC---------CeEEEEECCCCCCCeeeecccccceeEEEEecC
Q 035558          124 ES---------SEPDTPLVRLGWNKQDPRYMATIIMDS---------AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPH  185 (253)
Q Consensus       124 ~~---------~~~~~~i~~~~~~~~~~~~l~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  185 (253)
                      ..         .........+++++ ++..++....++         ..|.+||..+.+. +..+. +...+.+++|+|+
T Consensus       234 ~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-~~~~~-~~~~~~~~a~spD  310 (355)
T d2bbkh_         234 VEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFE-MGHEIDSINVSQD  310 (355)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEE-EEEEECEEEECCS
T ss_pred             cCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE-EEEec-CCCCEEEEEEcCC
Confidence            00         00011345588888 777776665443         2499999998663 55554 3456889999999


Q ss_pred             CCC-eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          186 SSC-HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       186 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      |.. ++++++.|+.|++||+++++...       .+..+......+.+.++
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~tg~~~~-------~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAESGEELR-------SVNQLGHGPQVITTADM  354 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEE-------EECCCCSSCCEEECCCC
T ss_pred             CCeEEEEEECCCCEEEEEECCCCCEEE-------EEeCcCCCccEEEeCCC
Confidence            843 45677889999999999987433       44445555555555443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=1.5e-13  Score=104.45  Aligned_cols=195  Identities=6%  Similarity=0.048  Sum_probs=120.8

Q ss_pred             CCCCceEEeec-C-cEEEEEccCCccccceeeeecCCC-CccccCCeeEEEecCCCCCEEEEEe------------CCCe
Q 035558            2 CQKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNK-NSEYCGPLTSFDWNEAEPRRIGTSS------------IDTT   66 (253)
Q Consensus         2 p~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~------------~dg~   66 (253)
                      |+...+++++. + .|++||+.++    +....+.... .......+..++|+ ++++++++++            .++.
T Consensus        49 pDG~~l~v~~~~~~~v~~~d~~t~----~~~~~~~~~~~~~~~~~~~~~v~~s-~DG~~l~v~~~~~~~~~~~~~~~~~~  123 (346)
T d1jmxb_          49 PDNRTAYVLNNHYGDIYGIDLDTC----KNTFHANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPR  123 (346)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTT----EEEEEEESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             CCCCEEEEEECCCCcEEEEeCccC----eeeeeecccccccccCCceEEEEEe-cCCCEEEEEecCCcceeeeeccCcce
Confidence            44444556665 3 8999999987    5555544322 11111346689999 8998887765            4678


Q ss_pred             EEEEeccCceeeeeeecc--cccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee--------------------
Q 035558           67 CTIWDIEREAVDTQLIAH--DKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY--------------------  123 (253)
Q Consensus        67 i~vwd~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------  123 (253)
                      +.+|+..+++....+..+  ...+..+.+. ++..+++ +  +.+.+|++.+.+....+.                    
T Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (346)
T d1jmxb_         124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  200 (346)
T ss_dssp             EEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-S--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             EEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe-C--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEE
Confidence            899999887755444322  2334445555 4443332 2  345666655433211110                    


Q ss_pred             ---------------------------------------------ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE
Q 035558          124 ---------------------------------------------ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL  158 (253)
Q Consensus       124 ---------------------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~  158 (253)
                                                                   ....+...+..+.+++ ++.+++.... +. |.+|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-v~v~  277 (346)
T d1jmxb_         201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP-KDPNQIYGVL-NR-LAKY  277 (346)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS-SCTTEEEEEE-SE-EEEE
T ss_pred             ecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeC-CCCEEEEecC-Ce-EEEE
Confidence                                                         0011223455666777 5555555544 44 9999


Q ss_pred             ECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          159 DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       159 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      |..+.+. +..+. +...+.+++|+||| ++|++++.|+.|++||+++.+..
T Consensus       278 d~~~~~~-~~~~~-~~~~~~~va~s~DG-~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         278 DLKQRKL-IKAAN-LDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             ETTTTEE-EEEEE-CSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEEE
T ss_pred             ECCCCcE-EEEEc-CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECccCCEE
Confidence            9987653 44443 45678999999999 69999999999999999987643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.52  E-value=1.3e-11  Score=94.98  Aligned_cols=182  Identities=10%  Similarity=-0.007  Sum_probs=116.2

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc------ccEEEEEecCCCeEEEEeCCCcEEEEEcCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD------KEVYDIAWGGVGVFASVSADGSVRVFDLRDK  116 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~  116 (253)
                      ....++.++|.....+++.+.|+.+.+|+...++.......+.      .....+.+..+..++..+.++.+.+|+....
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCC
Confidence            3456788884334456788899999999998887665543221      1223344444445667778999999998876


Q ss_pred             CCeeeeeccC---------CCCCCeeEEEeeCCCCCEE----------EEEEeCCCeEEEEECCCCCCCeeeecccccce
Q 035558          117 EHSTIIYESS---------EPDTPLVRLGWNKQDPRYM----------ATIIMDSAKVVVLDIRFPTLPVVELQRHQASV  177 (253)
Q Consensus       117 ~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l----------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i  177 (253)
                      ..........         ........++++| ++..+          ++...++. +.+||..+.+. +..+. +...+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~t~~~-~~~~~-~~~~~  320 (373)
T d2madh_         245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLVGQT-SSQIS-LGHDV  320 (373)
T ss_pred             eEEEEEeeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEeecCCCe-EEEEECCCCcE-EEEec-CCCCe
Confidence            5322111100         0111233445555 44333          33444455 89999988663 55444 56778


Q ss_pred             eEEEEecCCCC-eEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCC
Q 035558          178 NAIAWAPHSSC-HICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSS  235 (253)
Q Consensus       178 ~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  235 (253)
                      ..++|+|||.. ++++++.|+.|++||+.+++...       .+..++.....|+..++
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~-------~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ-------STVELGSGPQVLSVMNE  372 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE-------EECCCCCCCcEEEEecC
Confidence            99999999943 34688999999999999987543       55566677777766543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=3.4e-12  Score=101.64  Aligned_cols=142  Identities=11%  Similarity=0.149  Sum_probs=101.9

Q ss_pred             CCceEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC---------CCeEEEEeccC
Q 035558            4 KPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI---------DTTCTIWDIER   74 (253)
Q Consensus         4 ~~~~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~   74 (253)
                      +++++....+.+.+||+.++    +....+..+.-..+...|.++.|+ |++++|+.++.         ++.+.+||+++
T Consensus        27 d~~~~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~i~~~~~S-pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~  101 (470)
T d2bgra1          27 DHEYLYKQENNILVFNAEYG----NSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (470)
T ss_dssp             SSEEEEESSSCEEEEETTTC----CEEEEECTTTTTTSSSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             CCEEEEEcCCcEEEEECCCC----CEEEEEchhhhhhccCccceeEEC-CCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence            55666554448999999987    444444444433333789999999 89999998753         46789999998


Q ss_pred             ceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCC---------------CCCCeeEEEee
Q 035558           75 EAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSE---------------PDTPLVRLGWN  138 (253)
Q Consensus        75 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~i~~~~~~  138 (253)
                      ++. ..+..+...+..+.|+ +++.+|.. .++.+.+|+..+++..+.......               ..+....+.|+
T Consensus       102 ~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS  179 (470)
T d2bgra1         102 RQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS  179 (470)
T ss_dssp             TEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred             Ccc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC
Confidence            874 4577788899999999 99999986 467899999988875433221100               11234567899


Q ss_pred             CCCCCEEEEEEeCCC
Q 035558          139 KQDPRYMATIIMDSA  153 (253)
Q Consensus       139 ~~~~~~l~~~~~~~~  153 (253)
                      | +++.|+....|..
T Consensus       180 P-DGk~ia~~~~d~~  193 (470)
T d2bgra1         180 P-NGTFLAYAQFNDT  193 (470)
T ss_dssp             T-TSSEEEEEEEECT
T ss_pred             C-CCCccceeEecCC
Confidence            9 9999998765543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=2.3e-12  Score=99.38  Aligned_cols=219  Identities=9%  Similarity=-0.052  Sum_probs=134.2

Q ss_pred             cEEEEEccCCccccceeeeecCCCCcc--ccCCeeEEEecCCCCCEEEEEe-CCCeEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSE--YCGPLTSFDWNEAEPRRIGTSS-IDTTCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|++||..+.    +....+..+....  .......++|+ +++++++.+. .++.+.+||+.+++....+..+....  
T Consensus        97 ~v~v~D~~t~----~~~~~i~~p~~~~~~~g~~p~~~a~S-pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--  169 (368)
T d1mdah_          97 YVEVFDPVTF----LPIADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--  169 (368)
T ss_dssp             EEEEECTTTC----CEEEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--
T ss_pred             eEEEEECCCC----cEeeeecCCccceecccCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--
Confidence            6999999987    6666655443111  00223468999 8998888775 57899999999999888776544332  


Q ss_pred             EEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec---cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCC
Q 035558           91 IAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE---SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLP  166 (253)
Q Consensus        91 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~  166 (253)
                       .+. ....++..+.||.+..+++...........   ...+...+....+.+ ++..+.+  ..+. +++++.......
T Consensus       170 -~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~-v~~~~~~~~~~~  244 (368)
T d1mdah_         170 -IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWA--VASS-ILQGDIPAAGAT  244 (368)
T ss_dssp             -CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEEC--BSSC-CEEEECCSSCCE
T ss_pred             -EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEEe--cCCC-EEEEeecCCceE
Confidence             122 456677778899999998876653322211   111222344556665 5544443  3344 666666543321


Q ss_pred             ee-eec----------ccccceeEEEEecCCCCeEEEec-CC--------CcEEEEeccCCCCCCCCCCCCeeeccCCCc
Q 035558          167 VV-ELQ----------RHQASVNAIAWAPHSSCHICTAG-DD--------SQALIWDLSSMGQPVEGGLDPILAYTAGAE  226 (253)
Q Consensus       167 ~~-~~~----------~~~~~i~~~~~~~~~~~~l~~~~-~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  226 (253)
                      .. ...          ........++++|++. .++... .+        ..|.+||..+++..        ....+...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~-~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~--------~~~~~~~~  315 (368)
T d1mdah_         245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTD-GIMILTVEHSRSCLAAAENTSSVTASVGQTS--------GPISNGHD  315 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEECSSSCEEEETTTT-EEEEEEEECSSCTTSCEEEEEEEESSSCCEE--------ECCEEEEE
T ss_pred             EEeecccccceeeeeeecCCCceeEEEcCCCC-EEEEEecCCCceeecCCceEEEEECCCCcEe--------EEecCCCc
Confidence            10 000          0112234578899885 444332 22        35889999987633        22334567


Q ss_pred             eeEEEEcCCCCc-e-EEEEcCCcEEEEEC
Q 035558          227 IEQLQWSSSQPD-W-VAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~-~-~~~~~~~~i~vw~l  253 (253)
                      +.+++|+|+++. + ++...++.|++|+.
T Consensus       316 ~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         316 SDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            899999999974 3 35567889999984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=1.1e-09  Score=79.99  Aligned_cols=192  Identities=13%  Similarity=-0.022  Sum_probs=125.9

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      ....++++ ++++++++....+.+++++-.....+..... .....++++. +++++++-.....+..++......  ..
T Consensus        58 ~p~gvav~-~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~~  133 (260)
T d1rwia_          58 QPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TV  133 (260)
T ss_dssp             SCCCEEEC-TTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--EE
T ss_pred             CceEEEEc-CCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeecccccccccccccccee--ee
Confidence            45688898 7888887777766777666555544433322 3456889998 888887776777777777665442  12


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEE
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIW  202 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iw  202 (253)
                      ... ........++++| +++++++....+. |..+|...... .......-.....+++.+++ +++++....+.|..+
T Consensus       134 ~~~-~~~~~p~~i~~~~-~g~~~v~~~~~~~-i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         134 LPF-TGLNDPDGVAVDN-SGNVYVTDTDNNR-VVKLEAESNNQ-VVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKL  208 (260)
T ss_dssp             CCC-CSCCSCCEEEECT-TCCEEEEEGGGTE-EEEECTTTCCE-EECCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEE
T ss_pred             eee-cccCCcceeeecC-CCCEeeecccccc-cccccccccee-eeeeccccCCCccceeeeee-eeeeeecCCCEEEEE
Confidence            111 1122557899998 7887776666666 99998775432 22222344567899999998 588888888888888


Q ss_pred             eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          203 DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      +........       .....-.....|++++++..+++-..+++|+.+
T Consensus       209 ~~~~~~~~~-------~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         209 LAGSTTSTV-------LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CTTCSCCEE-------CCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eCCCCeEEE-------EccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            765433211       112233567899999999866666666666544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.34  E-value=1.8e-10  Score=89.60  Aligned_cols=199  Identities=7%  Similarity=-0.016  Sum_probs=124.2

Q ss_pred             EEEecCCCCCEEEEE-eCCCeEEEEeccCceeeeeee-cccccEEEEEec-CCC--eEEEEeCCC---------------
Q 035558           47 SFDWNEAEPRRIGTS-SIDTTCTIWDIEREAVDTQLI-AHDKEVYDIAWG-GVG--VFASVSADG---------------  106 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~--~l~~~~~dg---------------  106 (253)
                      ..... ++|++|++. ..+++|.++|+++++....+. .+...+..++|+ +++  +++..+.+.               
T Consensus        76 ~t~gt-pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          76 MTDGR-YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             EETTE-EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred             eeccc-CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence            33345 678888665 467899999999998777665 356788999999 777  444333332               


Q ss_pred             --cEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC--------------------------------
Q 035558          107 --SVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS--------------------------------  152 (253)
Q Consensus       107 --~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--------------------------------  152 (253)
                        .+..+|..+.+....+...    +....+.|+| +++++++.+.+.                                
T Consensus       155 ~~~~~~iD~~t~~v~~qI~v~----~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         155 YTMFTAIDAETMDVAWQVIVD----GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             EEEEEEEETTTCSEEEEEEES----SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             cceEEeecCccceeeEEEecC----CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence              2344677766543333221    2567799999 888888776542                                


Q ss_pred             --------CeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC-eee---
Q 035558          153 --------AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP-ILA---  220 (253)
Q Consensus       153 --------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~---  220 (253)
                              +.+.+++... ...+..+.... ....+.++|||..+++++..+++|.+||+++..........+ ...   
T Consensus       230 k~~~v~~~~v~vvd~~~~-~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~  307 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGE-SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE  307 (441)
T ss_dssp             CCBCCTTCCCCEEECSSS-CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred             CEEEeCCCCcEEEEcccC-CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence                    1122222222 22344454433 357899999995345677899999999998754322111110 011   


Q ss_pred             ccCCCceeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          221 YTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       221 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ....-.....+|.++|..+.+...|+.|..|++
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             cccccCcccceecCCceEEEcccccceEEEecc
Confidence            112233456789999876667788999999974

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=2.7e-11  Score=94.20  Aligned_cols=223  Identities=13%  Similarity=0.011  Sum_probs=136.9

Q ss_pred             CCceEEeec--C-cEEEEEccCCccccceeeeecC-CCCccccCCeeEEEecCCCCC--EEEEEeCCC------------
Q 035558            4 KPDLLATSS--D-FLRVWRISDEDRRVELKSLLNG-NKNSEYCGPLTSFDWNEAEPR--RIGTSSIDT------------   65 (253)
Q Consensus         4 ~~~~l~~~~--~-~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg------------   65 (253)
                      ||++|.+..  + .|.++|+++.    +..+.+.- +.     ..+..++|+ ++++  +++..+.+.            
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~----k~~~ii~iP~g-----~gphgi~~s-pdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIM----KTDKITHIPNV-----QAIHGLRLQ-KVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT----EEEEEEECTTC-----CCEEEEEEC-CSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             CCCEEEEEcCCCCEEEEEECCCC----cEeeEEecCCC-----CCccceEEe-ccCCEEEEEeccCCcccccCccccccc
Confidence            566665544  3 9999999986    66665543 23     568899999 6776  444444332            


Q ss_pred             -----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC----------------------------------
Q 035558           66 -----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD----------------------------------  105 (253)
Q Consensus        66 -----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----------------------------------  105 (253)
                           .+..+|.++.+....+... ..+..+.++ +++++++.+.+                                  
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk  230 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGN  230 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTC
T ss_pred             ccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCC
Confidence                 2345777777666555532 356778888 88877776643                                  


Q ss_pred             -------CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-------Ceeeec
Q 035558          106 -------GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-------PVVELQ  171 (253)
Q Consensus       106 -------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-------~~~~~~  171 (253)
                             +.+.+++....+....+.   ... ....+.++| +++++++++....+|.+||+++..+       ....+.
T Consensus       231 ~~~v~~~~v~vvd~~~~~~v~~~IP---vgk-sPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         231 FKTIGDSKVPVVDGRGESEFTRYIP---VPK-NPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             CBCCTTCCCCEEECSSSCSSEEEEC---CBS-SCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             EEEeCCCCcEEEEcccCCceEEEEe---CCC-CccCceECC-CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                   223333333332222221   112 346689999 8998877665555599999875321       111111


Q ss_pred             ccc---cceeEEEEecCCCCeEEEecCCCcEEEEeccCC------CCCC--CCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          172 RHQ---ASVNAIAWAPHSSCHICTAGDDSQALIWDLSSM------GQPV--EGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       172 ~~~---~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      ++.   -.....+|.++| +.+.+...|..|..|++...      ....  ..........+|...+.+.+++|+|++|+
T Consensus       306 ~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~  384 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLV  384 (441)
T ss_dssp             ECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEE
T ss_pred             eecccccCcccceecCCc-eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEE
Confidence            111   123446899998 68888899999999998532      1111  00000111257888888899999999988


Q ss_pred             EEE
Q 035558          241 AIA  243 (253)
Q Consensus       241 ~~~  243 (253)
                      +++
T Consensus       385 s~~  387 (441)
T d1qnia2         385 VLS  387 (441)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            884

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.26  E-value=5.9e-11  Score=94.33  Aligned_cols=150  Identities=11%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             EEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec--cCCCCCCeeEEEeeCCCCCEEEEEEe---------CCCeEE
Q 035558           89 YDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE--SSEPDTPLVRLGWNKQDPRYMATIIM---------DSAKVV  156 (253)
Q Consensus        89 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~---------~~~~i~  156 (253)
                      ..+.|. +++++.  ..|+.+.+||+.+++....+..  ...+...|.++.|+| ++++|+.++.         ++. +.
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~-~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTAS-YD   95 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEE-EE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCce-EE
Confidence            356788 776654  3578899999999986544332  233445799999999 9999988754         344 88


Q ss_pred             EEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC--CCCeeec---------cCCC
Q 035558          157 VLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG--LDPILAY---------TAGA  225 (253)
Q Consensus       157 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~---------~~~~  225 (253)
                      +||+.+.+  +..+..+...+..+.|+||| +.++.. .++.+.+|+...+.......  ..-....         ...+
T Consensus        96 l~d~~~~~--~~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1          96 IYDLNKRQ--LITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             EEETTTTE--ECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEECCCCc--ccccccCCccccccccccCc-ceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            99999754  56677888899999999999 577775 47789999998776332000  0000111         1233


Q ss_pred             ceeEEEEcCCCCceEEEEcCC
Q 035558          226 EIEQLQWSSSQPDWVAIAFST  246 (253)
Q Consensus       226 ~v~~~~~~~~~~~~~~~~~~~  246 (253)
                      ....+.|+|+|+.++....|.
T Consensus       172 ~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         172 AYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             SSBCEEECTTSSEEEEEEEEC
T ss_pred             CccccEECCCCCccceeEecC
Confidence            456788999999888765543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.25  E-value=2.3e-09  Score=80.07  Aligned_cols=197  Identities=10%  Similarity=0.038  Sum_probs=133.7

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTII  122 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  122 (253)
                      .+..+++. ++++++++...+++|+.|+....  ...+......+.+++|. +++++++...++.+..++..........
T Consensus        29 ~~e~iAv~-pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASA-PDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEEC-TTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEEC-CCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence            47789999 89999999999999998887643  23344566789999999 9999999888889988887665432222


Q ss_pred             eccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec---------ccccceeEEEEecCCCCeEEEe
Q 035558          123 YESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ---------RHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       123 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      ............+.+.+ +++++++-+..+. +..+|.......+....         ........+.+..+  .++++.
T Consensus       106 ~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--~l~~~~  181 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLS-DTQYLTADSYRGA-IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYVSN  181 (302)
T ss_dssp             EEECTTCSCEEEEEESS-SSEEEEEETTTTE-EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--EEEEEE
T ss_pred             ccccCCccccceeEEcc-CCCEEeecccccc-ceeeeccCCcceeEecCCccceeeccCcccccccccccCC--ceeeec
Confidence            22222334678899998 7877777666665 88888775432111111         11124556666543  477788


Q ss_pred             cCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          194 GDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       194 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +..+.|..++........     .............+++.++|..+++...++.|..++
T Consensus       182 ~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPG-----EPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBC-----CCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             CCCCeEEecccccccccc-----ccccccCCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            889999999887654332     112222344567899999998777777778777664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.23  E-value=7.8e-09  Score=77.14  Aligned_cols=220  Identities=7%  Similarity=0.018  Sum_probs=137.4

Q ss_pred             CCCceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCcee-ee
Q 035558            3 QKPDLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAV-DT   79 (253)
Q Consensus         3 ~~~~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~   79 (253)
                      ++|+++++...  +|..|+.+..      ...+....     ..+.+++|. ++++++++...++.+..++...... ..
T Consensus        37 pdG~l~vt~~~~~~I~~i~p~g~------~~~~~~~~-----~~~~gla~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          37 PDGTIFVTNHEVGEIVSITPDGN------QQIHATVE-----GKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCC------EEEEEECS-----SEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCCCEEEEeCCCCEEEEEeCCCC------EEEEEcCC-----CCcceEEEc-CCCCeEEEecCCceEEEEEeccccccee
Confidence            36778887764  7777776542      22233333     568899999 8999999988888888888764331 11


Q ss_pred             eee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc-------CCCCCCeeEEEeeCCCCCEEEEEE
Q 035558           80 QLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES-------SEPDTPLVRLGWNKQDPRYMATII  149 (253)
Q Consensus        80 ~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~  149 (253)
                      .+.  ........+++. +++++++-+.++.+..+|.............       .........+.+.   +..++.+.
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~---~~~l~~~~  181 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF---GNFLYVSN  181 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE---TTEEEEEE
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc---CCceeeec
Confidence            221  234567899999 8888888888999988888776422211111       1111244556664   34455554


Q ss_pred             eCCCeEEEEECCCCCCC-eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCcee
Q 035558          150 MDSAKVVVLDIRFPTLP-VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIE  228 (253)
Q Consensus       150 ~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  228 (253)
                      .....|..++....... .............+++.++| +++++...++.|..++........      ..........+
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G~~~~~------~~~~~~~~~pt  254 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTII------AQAEQGVIGST  254 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEE------ECGGGTCTTEE
T ss_pred             CCCCeEEeccccccccccccccccCCCCCcceEECCCC-CEEEEEcCCCcEEEECCCCCEEEE------EecCCCCCCce
Confidence            44444888887654321 11122233456789999999 577888888999999765432111      11222345688


Q ss_pred             EEEE---cCCCCceEEEEc
Q 035558          229 QLQW---SSSQPDWVAIAF  244 (253)
Q Consensus       229 ~~~~---~~~~~~~~~~~~  244 (253)
                      +++|   +++++.|..++.
T Consensus       255 ~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEECCSTTTTTEEEEEEC
T ss_pred             EEEEcCCCCCCCEEEEECC
Confidence            9999   667776665443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=2.4e-08  Score=73.59  Aligned_cols=229  Identities=8%  Similarity=-0.031  Sum_probs=138.8

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCC-ccccCCeeEEEecCCCCCEEEEE-eCCCeEEEEeccCceeee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKN-SEYCGPLTSFDWNEAEPRRIGTS-SIDTTCTIWDIEREAVDT   79 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~   79 (253)
                      +++++++-. + .|++||.+.     +.+..+..... .........+++.+..+..+++. +.++.|..++.. ++...
T Consensus        33 dg~i~VaD~~n~rI~v~d~~G-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~  106 (279)
T d1q7fa_          33 QNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVR  106 (279)
T ss_dssp             TCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCC-----CEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-cccee
Confidence            566766644 3 899998765     44443322110 00002334566552334444443 345577777764 55444


Q ss_pred             eee-cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEE
Q 035558           80 QLI-AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVV  157 (253)
Q Consensus        80 ~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~  157 (253)
                      .+. ........+++. ++.++++....+.+.+++.... ....+ ....+......+++.+ +++++++....+. |++
T Consensus       107 ~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~-g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~-V~~  182 (279)
T d1q7fa_         107 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKF-GCSKHLEFPNGVVVND-KQEIFISDNRAHC-VKV  182 (279)
T ss_dssp             EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEE-ECTTTCSSEEEEEECS-SSEEEEEEGGGTE-EEE
T ss_pred             ecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc-eeecc-cccccccccceeeecc-ceeEEeeeccccc-eee
Confidence            443 234567788888 8888888777788888876543 22222 2233444778888988 7777666665565 999


Q ss_pred             EECCCCCCCeeeec--ccccceeEEEEecCCCCeEEEec-CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          158 LDIRFPTLPVVELQ--RHQASVNAIAWAPHSSCHICTAG-DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       158 ~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      ||... + .+..+.  ++......+++.++| +++++-. .++.|.+|+.. ++...     .............|++.|
T Consensus       183 ~d~~G-~-~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~-G~~~~-----~~~~~~~~~~p~~vav~~  253 (279)
T d1q7fa_         183 FNYEG-Q-YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQLIS-----ALESKVKHAQCFDVALMD  253 (279)
T ss_dssp             EETTC-C-EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SCEEE-----EEEESSCCSCEEEEEEET
T ss_pred             eecCC-c-eeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECCC-CCEEE-----EEeCCCCCCCEeEEEEeC
Confidence            99764 2 244442  234467899999999 5666654 35579999853 33111     011122334678999999


Q ss_pred             CCCceEEEEcCCcEEEEE
Q 035558          235 SQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       235 ~~~~~~~~~~~~~i~vw~  252 (253)
                      ++. ++.+..++.|++|+
T Consensus       254 dG~-l~V~~~n~~v~~fr  270 (279)
T d1q7fa_         254 DGS-VVLASKDYRLYIYR  270 (279)
T ss_dssp             TTE-EEEEETTTEEEEEE
T ss_pred             CCc-EEEEeCCCeEEEEE
Confidence            996 66667889999997

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=4.5e-08  Score=71.31  Aligned_cols=206  Identities=12%  Similarity=0.087  Sum_probs=119.6

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCC---eEEEEeccCceeeeeeecccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDT---TCTIWDIEREAVDTQLIAHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~   90 (253)
                      .|.|-|.+..    .......+ .     ..+.+-+|| |+|+.||-.....   .+.+.+...+... .+..+......
T Consensus        20 ~l~i~d~dG~----~~~~l~~~-~-----~~~~sP~wS-PDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   87 (269)
T d2hqsa1          20 ELRVSDYDGY----NQFVVHRS-P-----QPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA   87 (269)
T ss_dssp             EEEEEETTSC----SCEEEEEE-S-----SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred             EEEEEcCCCC----CcEEEecC-C-----CceeeeEEC-CCCCEEEEEEeeccCcceeeeecccCcee-EEeeeeccccc
Confidence            4777777763    33333333 3     568889999 8999998664433   4666676655543 34446778888


Q ss_pred             EEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEE-EEEeCCC-eEEEEECCCCCCC
Q 035558           91 IAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMA-TIIMDSA-KVVVLDIRFPTLP  166 (253)
Q Consensus        91 ~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~-~i~~~d~~~~~~~  166 (253)
                      ..|+ ++..++.... ++...++........ .... ...........+++ ++..++ +...++. .|...++....  
T Consensus        88 ~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~i~~~~~~~~~--  162 (269)
T d2hqsa1          88 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQV-TDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA--  162 (269)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEC-CCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC--
T ss_pred             ceecCCCCeeeEeeecCCccceeeccccccc-ceee-eecccccccccccc-ccccceecccccCCceEeeeeccccc--
Confidence            9999 8887776553 333333333322211 1111 12222444556666 444444 4444443 25555665543  


Q ss_pred             eeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          167 VVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       167 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ...+...........|+|++..++......+...+|........       .....+........|+|+|+.|+-.+
T Consensus       163 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         163 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-------VQVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-------EEECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             ceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc-------ceEeecCccccceEECCCCCEEEEEE
Confidence            44455556677888999999534444455566666655544322       23444555667889999999876433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.14  E-value=5.6e-08  Score=74.38  Aligned_cols=164  Identities=10%  Similarity=0.036  Sum_probs=101.9

Q ss_pred             cEEEEEec-CCCeEEEEeC-CCcEEEEEcCCCCCeeeee--ccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCC
Q 035558           87 EVYDIAWG-GVGVFASVSA-DGSVRVFDLRDKEHSTIIY--ESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRF  162 (253)
Q Consensus        87 ~v~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  162 (253)
                      -+.++.|+ ++++++++.. ...|.+|+...........  ...........++|+| +++++.+....+..|.+|++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence            46899999 9997777754 4578888876554332221  1122334789999999 8888888777666699999876


Q ss_pred             CCCC-eeeec-----------------ccccceeEEEEecCCCCeEEEecC------CCcEEEEeccCCCCCCCCCCCCe
Q 035558          163 PTLP-VVELQ-----------------RHQASVNAIAWAPHSSCHICTAGD------DSQALIWDLSSMGQPVEGGLDPI  218 (253)
Q Consensus       163 ~~~~-~~~~~-----------------~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~  218 (253)
                      .... +....                 .+......+.++|+| ++|+++..      .+.|..|++........ .....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~-~~~~~  302 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEK-QLFLS  302 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEE-EEEEE
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCceee-EeEee
Confidence            5421 11110                 112235678999999 57766532      23377777765432210 00000


Q ss_pred             eeccCCCceeEEEEcC-CCCceEEE-EcCCcEEEEEC
Q 035558          219 LAYTAGAEIEQLQWSS-SQPDWVAI-AFSTKLQILRV  253 (253)
Q Consensus       219 ~~~~~~~~v~~~~~~~-~~~~~~~~-~~~~~i~vw~l  253 (253)
                      ...........++++| +|++++++ ..++.|.+|++
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            1112345678899998 78866655 56788999973

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.09  E-value=3.8e-07  Score=68.14  Aligned_cols=194  Identities=7%  Similarity=0.033  Sum_probs=116.6

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeeccc----ccEEEEEec-CCCeEEEEeC--------------
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHD----KEVYDIAWG-GVGVFASVSA--------------  104 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~-~~~~l~~~~~--------------  104 (253)
                      .-..+.|. ++++.++++...+.|...+.+............    ...+++++. ++++.++-..              
T Consensus        72 ~P~Gl~~~-~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCD-RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEEC-SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEe-CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            35689999 888888888777778888887554222111111    135778888 8887776432              


Q ss_pred             -CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC----EEEEEEeCCCeEEEEECCCCCCCe-----eeecc-c
Q 035558          105 -DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR----YMATIIMDSAKVVVLDIRFPTLPV-----VELQR-H  173 (253)
Q Consensus       105 -dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~l~~~~~~~~~i~~~d~~~~~~~~-----~~~~~-~  173 (253)
                       .|.|..++... + ...+...   -...+.++|+| +++    .|+++......|..||+.......     ..+.. +
T Consensus       151 ~~G~v~~~~~dg-~-~~~~~~~---~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         151 KFGSIYCFTTDG-Q-MIQVDTA---FQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             SCEEEEEECTTS-C-EEEEEEE---ESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             CCceEEEEeecC-c-eeEeeCC---cceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence             22333333322 2 1111111   11346788988 443    566655544459889876543211     11111 2


Q ss_pred             ccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCce-EEEEcCCcEEEEE
Q 035558          174 QASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDW-VAIAFSTKLQILR  252 (253)
Q Consensus       174 ~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~vw~  252 (253)
                      ......+++.++| ++.++....+.|.+||.+.+...       .........+++++|.|+++.+ ++.+.++.|...+
T Consensus       225 ~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~-------~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         225 EGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPK-------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             SCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCS-------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEE-------EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            2345689999999 57777777899999998765422       1333445678899999988644 5666667666554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=2.2e-09  Score=82.36  Aligned_cols=172  Identities=9%  Similarity=-0.109  Sum_probs=111.4

Q ss_pred             cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe----------CCCeEEEEeccCceeeeeeec
Q 035558           14 FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS----------IDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .|.+||..++    +.+..+..+.     .+  .++|+ ++++.|+..+          .|+.|.+||..+++.+..+..
T Consensus        47 ~~~~~d~~~~----~~~~~~~~~~-----~~--~~a~s-pDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~  114 (368)
T d1mdah_          47 ENWVSCAGCG----VTLGHSLGAF-----LS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             EEEEEETTTT----EEEEEEEECT-----TC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred             eEEEEeCCCC----cEEEEEeCCC-----CC--cceEC-CCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC
Confidence            5777788887    7777777665     33  58899 8898888754          367899999999998877754


Q ss_pred             ccc-------cEEEEEec-CCCeEEEEe-CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCe
Q 035558           84 HDK-------EVYDIAWG-GVGVFASVS-ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAK  154 (253)
Q Consensus        84 ~~~-------~v~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~  154 (253)
                      +..       ....++|+ ++++++++. .++.+.+||+.+.+....+.....   .    ...|.....++..+.|+. 
T Consensus       115 p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~---~----~~~~~~~~~~v~~~~Dg~-  186 (368)
T d1mdah_         115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC---F----HIHPGAAATHYLGSCPAS-  186 (368)
T ss_dssp             TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC---C----CCEEEETTEEECCCCTTS-
T ss_pred             CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc---c----eEccCCCceEEEEcCCCC-
Confidence            322       23468999 999888776 579999999999875544432211   1    112223455666667777 


Q ss_pred             EEEEECCCCCCCe-----eeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          155 VVVLDIRFPTLPV-----VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       155 i~~~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      +.++++.......     .....+...+..+.+.+++ ..+.+.  ++.+.+++.....
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~--~~~v~~~~~~~~~  242 (368)
T d1mdah_         187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG-MLVWAV--ASSILQGDIPAAG  242 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-EEEECB--SSCCEEEECCSSC
T ss_pred             EEEEEecCCceeeeeeecccccccccceeecccccCc-EEEEec--CCCEEEEeecCCc
Confidence            7777766544321     1222344455667777776 344443  4556666665544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.05  E-value=2.8e-07  Score=69.10  Aligned_cols=204  Identities=11%  Similarity=0.089  Sum_probs=128.4

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeC----CCcEEEEEcCCCCC
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSA----DGSVRVFDLRDKEH  118 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~----dg~i~i~d~~~~~~  118 (253)
                      .+..++|. ++++++++-...+.|+.|+.++++....+.........+++. +++++++...    .+.+...+......
T Consensus        41 ~lEG~~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            45689998 788888887788999999998776555555556678899999 8887776543    23355555554443


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC-----CCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMD-----SAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      .... ...........+++.+ ++++.++....     ...+..++...  ..+..+...-...+.++|+|++..+.++-
T Consensus       120 ~~~~-~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         120 QDII-EDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             EEEE-CSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeec-cCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeeeeccccceEEEec
Confidence            2222 2222233678899999 88766653221     11144444432  22444333334568899999995355666


Q ss_pred             cCCCcEEEEeccCCCCCCCCC-CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          194 GDDSQALIWDLSSMGQPVEGG-LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       194 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      +..+.|..|++.......... ...............+++.++|..+++....+.|.+++
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            778999999987543221000 00001112233467899999998788888888888775

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=5.6e-07  Score=65.32  Aligned_cols=206  Identities=7%  Similarity=0.049  Sum_probs=114.9

Q ss_pred             CCCceEEeec-C----cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CCeEEEEe--ccC
Q 035558            3 QKPDLLATSS-D----FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DTTCTIWD--IER   74 (253)
Q Consensus         3 ~~~~~l~~~~-~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd--~~~   74 (253)
                      |||+.||-.. +    .+.+.+....     ....+..+.     .......|+ +++..++.... ++...++.  ...
T Consensus        48 PDGk~IAf~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~~~~s-pdg~~i~~~~~~~~~~~~~~~~~~~  116 (269)
T d2hqsa1          48 PDGSKLAYVTFESGRSALVIQTLANG-----AVRQVASFP-----RHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLAS  116 (269)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTC-----CEEEEECCS-----SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             CCCCEEEEEEeeccCcceeeeecccC-----ceeEEeeee-----cccccceec-CCCCeeeEeeecCCccceeeccccc
Confidence            3555555433 2    4555555553     233344444     677889999 78887776543 33333332  222


Q ss_pred             ceeeeeeecccccEEEEEec-CC-CeEEEEeCCCcE--EEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe
Q 035558           75 EAVDTQLIAHDKEVYDIAWG-GV-GVFASVSADGSV--RVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM  150 (253)
Q Consensus        75 ~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  150 (253)
                      ....... ..........++ ++ ..+++...+|..  ...++........    ...........|+| ++..++..+.
T Consensus       117 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~sp-dg~~~~~~~~  190 (269)
T d2hqsa1         117 GQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI----TWEGSQNQDADVSS-DGKFMVMVSS  190 (269)
T ss_dssp             CCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC----CCSSSEEEEEEECT-TSSEEEEEEE
T ss_pred             ccceeee-eccccccccccccccccceecccccCCceEeeeecccccceee----eccccccccccccc-ccceeEEEee
Confidence            2222222 233333444555 44 455555556654  4445555432211    22334667788999 8888887777


Q ss_pred             CCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEec---CCCcEEEEeccCCCCCCCCCCCCeeeccCCCce
Q 035558          151 DSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAG---DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEI  227 (253)
Q Consensus       151 ~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v  227 (253)
                      +++...+|......... ....+........|+||| +.|+..+   ....|.++++.....        ..+......+
T Consensus       191 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG-~~i~f~s~~~~~~~l~~~~~dg~~~--------~~lt~~~g~~  260 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK--------ARLPATDGQV  260 (269)
T ss_dssp             CSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCCE--------EECCCSSSEE
T ss_pred             cCCceeeeEeecccccc-eEeecCccccceEECCCC-CEEEEEEcCCCCcEEEEEECCCCCE--------EEEeCCCCcE
Confidence            66535555444333323 333445566788999999 4665333   245678888876542        2445556778


Q ss_pred             eEEEEcCC
Q 035558          228 EQLQWSSS  235 (253)
Q Consensus       228 ~~~~~~~~  235 (253)
                      ...+|+|-
T Consensus       261 ~~p~WSP~  268 (269)
T d2hqsa1         261 KFPAWSPY  268 (269)
T ss_dssp             EEEEECCC
T ss_pred             EeEEeCCC
Confidence            88999983

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.02  E-value=3.3e-07  Score=70.03  Aligned_cols=222  Identities=7%  Similarity=-0.034  Sum_probs=121.1

Q ss_pred             cEEEEEccCCccccceeeeecC-CCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--cccccEEE
Q 035558           14 FLRVWRISDEDRRVELKSLLNG-NKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYD   90 (253)
Q Consensus        14 ~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~   90 (253)
                      .|..+.++.....+..+..... ..     ..+.-|+|+ ++++.|+++.. +.+..|.+.....+....  ........
T Consensus        15 ~i~~~~fd~~~~~l~~~~~~~~~~~-----~~~s~la~s-~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~   87 (365)
T d1jofa_          15 AIFTVQFDDEKLTCKLIKRTEIPQD-----EPISWMTFD-HERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRA   87 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCTT-----CCCSEEEEC-TTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGG
T ss_pred             CEEEEEEcCCCCeEEEeeeeeccCC-----CCCCEEEEc-CCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEE
Confidence            6777766654233333333222 22     456679999 88888887764 567778775432122111  11223345


Q ss_pred             EEec-CCCe--EEEEe-CCCcEEEEEcCC------------CCCe-eeeec-cCCCCCCeeEEEeeCCCCCEEEEEEeCC
Q 035558           91 IAWG-GVGV--FASVS-ADGSVRVFDLRD------------KEHS-TIIYE-SSEPDTPLVRLGWNKQDPRYMATIIMDS  152 (253)
Q Consensus        91 ~~~~-~~~~--l~~~~-~dg~i~i~d~~~------------~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~~~  152 (253)
                      +.++ +++.  ++++. ..+.+..+.+..            .... ..... .......+.++.|+| ++++++++....
T Consensus        88 v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~  166 (365)
T d1jofa_          88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTA  166 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred             EEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCC
Confidence            5566 5553  22222 234444443322            1111 01110 111223578999999 999888887655


Q ss_pred             CeEEEEECCCCCCC--eeee--cccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC------------CC
Q 035558          153 AKVVVLDIRFPTLP--VVEL--QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG------------LD  216 (253)
Q Consensus       153 ~~i~~~d~~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~  216 (253)
                      ..|.+|+.......  ....  .........++|+|++..+.++.-.+++|.+|++..........            ..
T Consensus       167 d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (365)
T d1jofa_         167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR  246 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred             CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccc
Confidence            45999887654321  1111  12345678899999995334566678999999997654221000            00


Q ss_pred             CeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          217 PILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       217 ~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ......+......+.++|+|++++++.
T Consensus       247 ~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         247 DPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ccccccccCCccceEECCCCCEEEEEc
Confidence            001112334567899999999877653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=8.7e-08  Score=69.72  Aligned_cols=192  Identities=11%  Similarity=-0.003  Sum_probs=117.7

Q ss_pred             CeeEEEecCCCCCEEEEE-eCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeee
Q 035558           44 PLTSFDWNEAEPRRIGTS-SIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTI  121 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  121 (253)
                      ...++++. ++++..++. +..+.+..++............-......+++. +++++++....+.+++++-.+..   .
T Consensus        15 ~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~---~   90 (260)
T d1rwia_          15 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ---T   90 (260)
T ss_dssp             CEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC---E
T ss_pred             CCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce---e
Confidence            45789999 788866654 455677777665443222221222345778898 88888777777777666544433   2


Q ss_pred             eeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558          122 IYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI  201 (253)
Q Consensus       122 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  201 (253)
                      .... ........+++.+ +++++++-..... +..++............ ......+++++|++ +++++...++.|..
T Consensus        91 ~~~~-~~~~~p~~iavd~-~g~i~v~d~~~~~-~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g-~~~v~~~~~~~i~~  165 (260)
T d1rwia_          91 VLPF-DGLNYPEGLAVDT-QGAVYVADRGNNR-VVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSG-NVYVTDTDNNRVVK  165 (260)
T ss_dssp             ECCC-CSCCSEEEEEECT-TCCEEEEEGGGTE-EEEECTTCSSCEECCCC-SCCSCCEEEECTTC-CEEEEEGGGTEEEE
T ss_pred             eeee-eeeeecccccccc-cceeEeecccccc-ccccccccceeeeeeec-ccCCcceeeecCCC-CEeeeccccccccc
Confidence            2221 2223678899998 7777665544444 77777655332122112 22355789999998 58888888889999


Q ss_pred             EeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEE
Q 035558          202 WDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQIL  251 (253)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw  251 (253)
                      ++........       ...........|++.+++..+++....+.+..+
T Consensus       166 ~d~~~~~~~~-------~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         166 LEAESNNQVV-------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             ECTTTCCEEE-------CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             cccccceeee-------eeccccCCCccceeeeeeeeeeeecCCCEEEEE
Confidence            9877644221       222344567899999998755555556666544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=9e-07  Score=64.88  Aligned_cols=156  Identities=13%  Similarity=0.100  Sum_probs=107.7

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeee--cccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLI--AHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                      .....+++. +++.++++....+.+.+++.. ++.+..+.  .+......+++. +++.+++....+.|++||..... .
T Consensus       114 ~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~  190 (279)
T d1q7fa_         114 QHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-L  190 (279)
T ss_dssp             SCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-E
T ss_pred             cccceeccc-cCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCCce-e
Confidence            456788888 788888887777888888875 45555442  345677888888 88888888889999999976532 2


Q ss_pred             eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecc--cccceeEEEEecCCCCeEEEecCCC
Q 035558          120 TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQR--HQASVNAIAWAPHSSCHICTAGDDS  197 (253)
Q Consensus       120 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg  197 (253)
                      ..+ ...+.......+++.+ +++++++-..++..|.+++.. ++ .+..+..  .......+++.|+| ++ ++++.++
T Consensus       191 ~~~-g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~-G~-~~~~~~~~~~~~~p~~vav~~dG-~l-~V~~~n~  264 (279)
T d1q7fa_         191 RQI-GGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQ-LISALESKVKHAQCFDVALMDDG-SV-VLASKDY  264 (279)
T ss_dssp             EEE-SCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SC-EEEEEEESSCCSCEEEEEEETTT-EE-EEEETTT
T ss_pred             eee-cccccccCCccccccc-CCeEEEEECCCCcEEEEECCC-CC-EEEEEeCCCCCCCEeEEEEeCCC-cE-EEEeCCC
Confidence            222 2223334678899999 888776654444348898853 33 2444432  23357899999998 44 4556789


Q ss_pred             cEEEEeccCC
Q 035558          198 QALIWDLSSM  207 (253)
Q Consensus       198 ~i~iwd~~~~  207 (253)
                      +|++|.....
T Consensus       265 ~v~~fr~~~~  274 (279)
T d1q7fa_         265 RLYIYRYVQL  274 (279)
T ss_dssp             EEEEEECSCC
T ss_pred             eEEEEEeeee
Confidence            9999988765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.94  E-value=2.6e-06  Score=63.65  Aligned_cols=222  Identities=7%  Similarity=-0.019  Sum_probs=127.9

Q ss_pred             CCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC----CCeEEEEeccCcee
Q 035558            4 KPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI----DTTCTIWDIEREAV   77 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~   77 (253)
                      ++++.++-. . .|..|+.+..    .....+....     .....++++ ++++++++...    .+.+...+......
T Consensus        50 ~G~Ly~~D~~~g~I~ri~p~g~----~~~~~~~~~~-----~~p~gla~~-~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          50 QGQLFLLDVFEGNIFKINPETK----EIKRPFVSHK-----ANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             TSCEEEEETTTCEEEEECTTTC----CEEEEEECSS-----SSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CCCEEEEECCCCEEEEEECCCC----eEEEEEeCCC-----CCeeEEEEC-CCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            455655543 3 7777776664    3333333333     457899999 78888776543    23455555554443


Q ss_pred             eeeeec--ccccEEEEEec-CCCeEEEEeC------CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEE
Q 035558           78 DTQLIA--HDKEVYDIAWG-GVGVFASVSA------DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATI  148 (253)
Q Consensus        78 ~~~~~~--~~~~v~~~~~~-~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  148 (253)
                      ......  -......+++. ++++.++...      .+.+..++..... ...+...   -...+.++|+| +++.|+++
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~---~~~pnGia~s~-dg~~lyva  194 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQN---ISVANGIALST-DEKVLWVT  194 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEE---ESSEEEEEECT-TSSEEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeec---cceeeeeeecc-ccceEEEe
Confidence            322221  12356788888 8887766432      1234444444332 2222111   11456799999 77777666


Q ss_pred             EeCCCeEEEEECCCCCCCeeeec-------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeec
Q 035558          149 IMDSAKVVVLDIRFPTLPVVELQ-------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAY  221 (253)
Q Consensus       149 ~~~~~~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  221 (253)
                      ......|..||+...........       ........|++.++| ++.++....+.|.+||.. ++... ....|....
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p~-G~~l~-~i~~P~~~~  271 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYPIG-QILIPGRDE  271 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCEEE-EEECTTGGG
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECCC-CcEEE-EEeCCCcCC
Confidence            55444599999875432222111       112235689999999 577777789999999954 44221 001111223


Q ss_pred             cCCCceeEEEEcCCCCceEEEE
Q 035558          222 TAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       222 ~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                      ++...+++++|.+....++...
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcCceeeeEEEeCCCCEEEEEc
Confidence            4556788999999877666544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=4.7e-06  Score=62.07  Aligned_cols=159  Identities=8%  Similarity=0.032  Sum_probs=100.3

Q ss_pred             CeeEEEecCCCCCEEEEEeC---------------CCeEEEEeccCceeeeeeecccccEEEEEec-CCC-----eEEEE
Q 035558           44 PLTSFDWNEAEPRRIGTSSI---------------DTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVG-----VFASV  102 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~-----~l~~~  102 (253)
                      ..+.+++. +++++.++-..               .|.|..++.. ++..... ..-...+.++|+ +++     ++++-
T Consensus       118 ~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         118 GCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEe
Confidence            35778998 78888776432               2345555543 3322222 222344678887 543     45555


Q ss_pred             eCCCcEEEEEcCCCCCeee---eeccC-CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeeccccccee
Q 035558          103 SADGSVRVFDLRDKEHSTI---IYESS-EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVN  178 (253)
Q Consensus       103 ~~dg~i~i~d~~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~  178 (253)
                      +..+.|..||+........   ..... ........+++.. ++++.++....+. |.+||.+... .+..+.......+
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~-I~~~dp~~g~-~~~~i~~p~~~~t  271 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSH-IEVFGPDGGQ-PKMRIRCPFEKPS  271 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTE-EEEECTTCBS-CSEEEECSSSCEE
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCE-EEEEeCCCCE-EEEEEECCCCCEE
Confidence            7788899999875542221   11111 1222456789988 8887766555565 9999987654 3455555556788


Q ss_pred             EEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          179 AIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      +++|.|++..++++.+.+|.|.-+++....
T Consensus       272 ~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         272 NLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            999999985466788888999888876544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.1e-06  Score=69.18  Aligned_cols=221  Identities=11%  Similarity=0.145  Sum_probs=126.5

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe---------CCCeEEEEecc
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS---------IDTTCTIWDIE   73 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~vwd~~   73 (253)
                      ++.++....+ .|.+|++.++    +....+....-..  ..+....|+ |++++++...         ..+.+.++|+.
T Consensus        27 ~~~~~~~~~~g~i~~~~~~~~----~~~~l~~~~~~~~--~~~~~~~~S-pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          27 DTEFIYREQKGTVRLWNVETN----TSTVLIEGKKIES--LRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             SSCBCCCCSSSCEEEBCGGGC----CCEEEECTTTTTT--TTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CCcEEEEeCCCcEEEEECCCC----CEEEEEcCccccc--cccceeEEC-CCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            3455555555 8999999876    3322233222111  356778899 8999887764         34678999998


Q ss_pred             Cceeeeee--ecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCC---------------CCCeeEE
Q 035558           74 REAVDTQL--IAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEP---------------DTPLVRL  135 (253)
Q Consensus        74 ~~~~~~~~--~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------------~~~i~~~  135 (253)
                      +++.....  ......+....|+ +++.+|... ++.|.+.+..++...+........               .+.-..+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            87644322  2234456678899 999988876 567888888776654443221110               0112467


Q ss_pred             EeeCCCCCEEEEEEeCCCeEEE---------------------------------EECCCCCCCeeee-----cccccce
Q 035558          136 GWNKQDPRYMATIIMDSAKVVV---------------------------------LDIRFPTLPVVEL-----QRHQASV  177 (253)
Q Consensus       136 ~~~~~~~~~l~~~~~~~~~i~~---------------------------------~d~~~~~~~~~~~-----~~~~~~i  177 (253)
                      .|+| +++.||....|...+..                                 +|+..........     ......+
T Consensus       179 ~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~  257 (465)
T d1xfda1         179 WWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (465)
T ss_dssp             EECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence            7999 99999987654432333                                 3333222111111     1122346


Q ss_pred             eEEEEecCCCCeEEEe-cCC---CcEEEEeccCCCCCCCCCCCCeeeccCCCce----eEEEEcCCCCceE
Q 035558          178 NAIAWAPHSSCHICTA-GDD---SQALIWDLSSMGQPVEGGLDPILAYTAGAEI----EQLQWSSSQPDWV  240 (253)
Q Consensus       178 ~~~~~~~~~~~~l~~~-~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~  240 (253)
                      ..+.|.|++ ++++.. ..+   ..+.++|..++....      .........|    ....|+|+|+.++
T Consensus       258 ~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~------~~~e~~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         258 TMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTK------KHEDESEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             EEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEE------EEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             eeeEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEE------EEEEcCCceEeccCCceeEccCCCeeE
Confidence            788999998 455543 222   367778888776432      1111112211    2456888887543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.58  E-value=4.4e-05  Score=56.07  Aligned_cols=199  Identities=9%  Similarity=-0.059  Sum_probs=124.8

Q ss_pred             EEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeecc
Q 035558           47 SFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYES  125 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  125 (253)
                      +..|++.++.++.+=-..+.|..||.++++.. .+. ....+.++++. +++++++ +.+ -+..+|..+++........
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            45677556666666557789999999887643 232 34567888888 7766665 455 4889999888643222211


Q ss_pred             -CCCCCCeeEEEeeCCCCCEEEEEEeCCC---eEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEE
Q 035558          126 -SEPDTPLVRLGWNKQDPRYMATIIMDSA---KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALI  201 (253)
Q Consensus       126 -~~~~~~i~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i  201 (253)
                       ......++.+.+.| ++++.++......   .-.+|.+..++  +..+...-...+.++|++++..++++-+..+.|..
T Consensus        98 ~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             cCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCc--EEEEeeccCCcceeeecCCCceEEEeecccceeeE
Confidence             12223678899999 8877666543221   14566665543  33333334456889999999556677778899999


Q ss_pred             EeccCCCCCCCCCCC-CeeeccCCCceeEEEEcCCCCceEEEEcCCcEEEEE
Q 035558          202 WDLSSMGQPVEGGLD-PILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILR  252 (253)
Q Consensus       202 wd~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~vw~  252 (253)
                      |++............ .....+.......+++..+|..+++.-..+.|..|+
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            988543321100000 011223455678899999998777766777777764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.54  E-value=5.7e-05  Score=55.46  Aligned_cols=214  Identities=6%  Similarity=-0.021  Sum_probs=126.1

Q ss_pred             CCCceEEeec-C-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeee
Q 035558            3 QKPDLLATSS-D-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQ   80 (253)
Q Consensus         3 ~~~~~l~~~~-~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   80 (253)
                      .++.+..+-- . .|.-||..++    + ...+...      ..+.++++. .++.++++ +.+ -|.++|..+++....
T Consensus        28 ~~~~l~wvDi~~~~I~r~d~~~g----~-~~~~~~~------~~~~~i~~~-~dg~l~va-~~~-gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          28 ASGTAWWFNILERELHELHLASG----R-KTVHALP------FMGSALAKI-SDSKQLIA-SDD-GLFLRDTATGVLTLH   93 (295)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTT----E-EEEEECS------SCEEEEEEE-ETTEEEEE-ETT-EEEEEETTTCCEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCC----e-EEEEECC------CCcEEEEEe-cCCCEEEE-EeC-ccEEeecccceeeEE
Confidence            3455544432 2 6777777764    2 2223222      457788887 67766654 555 488899988874332


Q ss_pred             ee--c--ccccEEEEEec-CCCeEEEEeC----CCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC
Q 035558           81 LI--A--HDKEVYDIAWG-GVGVFASVSA----DGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD  151 (253)
Q Consensus        81 ~~--~--~~~~v~~~~~~-~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  151 (253)
                      ..  .  ....++++.+. ++++.++...    .+.-.+|.+..++........    ...+.++|++ +++.++.+...
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~-d~~~l~~~dt~  168 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSP-DGTTGYFVDTK  168 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECT-TSCEEEEEETT
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecC-CCceEEEeecc
Confidence            21  1  12357888888 8887666543    234556666655432222221    1457789999 77766666655


Q ss_pred             CCeEEEEECCCCCC-----Ce--eeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCC
Q 035558          152 SAKVVVLDIRFPTL-----PV--VELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAG  224 (253)
Q Consensus       152 ~~~i~~~d~~~~~~-----~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  224 (253)
                      ...|..|++.....     ..  ..+.........+++..+| ++.++.-..+.|..||.. ++...       ...--.
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~-G~~~~-------~i~lP~  239 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-GNHIA-------RYEVPG  239 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-CCEEE-------EEECSC
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCC-CcEee-------EecCCC
Confidence            55599998753221     11  1122334567889999999 566666667889999954 43221       222223


Q ss_pred             CceeEEEEc-CCCCceE-EEEc
Q 035558          225 AEIEQLQWS-SSQPDWV-AIAF  244 (253)
Q Consensus       225 ~~v~~~~~~-~~~~~~~-~~~~  244 (253)
                      ..+++++|- |+.+.|+ +.+.
T Consensus       240 ~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         240 KQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             SBEEEEEEESTTSCEEEEEEBC
T ss_pred             CceEEEEEeCCCCCEEEEEECC
Confidence            568999995 6655555 4443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=8.3e-05  Score=53.59  Aligned_cols=194  Identities=10%  Similarity=0.000  Sum_probs=112.8

Q ss_pred             ceEEeecC-cEEEEEccCCccc-cceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeec
Q 035558            6 DLLATSSD-FLRVWRISDEDRR-VELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIA   83 (253)
Q Consensus         6 ~~l~~~~~-~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   83 (253)
                      .+|.-+.. .|+-.+++..... ......+..+.     ..+.+++|.+.++..+.+-..++.|+..++........+..
T Consensus         2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~-----~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~   76 (263)
T d1npea_           2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ   76 (263)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT
T ss_pred             CEEEEeCCCeEEEEECCCccccccccccccccCC-----CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe
Confidence            44555554 7777777653111 11222233333     45778999844444444445667898888876554443433


Q ss_pred             ccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCC-eEEEEEC
Q 035558           84 HDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSA-KVVVLDI  160 (253)
Q Consensus        84 ~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~i~~~d~  160 (253)
                      ....+.++++.  .+.+..+-...+.|.+.++...........   .......++++|..+.++.+-...+. .|.-.++
T Consensus        77 ~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~---~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~  153 (263)
T d1npea_          77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (263)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecc---cccCCcEEEEecccCcEEEeecCCCCcEEEEecC
Confidence            33567888887  444555656678999999987654332221   12368899999955544444332222 1444455


Q ss_pred             CCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          161 RFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      ..... .......-....++++.+.+.++.++-...+.|...++....
T Consensus       154 dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         154 DGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             TSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            43332 222222334568999998875444555677889988887644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.7e-06  Score=68.18  Aligned_cols=149  Identities=11%  Similarity=0.134  Sum_probs=89.9

Q ss_pred             EEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEe---------CCCeEEEEEC
Q 035558           91 IAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIM---------DSAKVVVLDI  160 (253)
Q Consensus        91 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------~~~~i~~~d~  160 (253)
                      ..|. ++.++. -..+|.|.+||+.+++....+.........+....|+| ++++++....         .+. +.+||+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~-~~i~d~   98 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGY-YVLSKI   98 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSE-EEEEES
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeecccc-EEEEEc
Confidence            3577 655543 35678899999998876444433333334677889999 8888877642         334 889999


Q ss_pred             CCCCC-CeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCC--CCCCCCeeeccCC---------Ccee
Q 035558          161 RFPTL-PVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPV--EGGLDPILAYTAG---------AEIE  228 (253)
Q Consensus       161 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~---------~~v~  228 (253)
                      .+... ++.........+....|+|+|. .+|-.. ++.|.+.+...+....  ..........+..         ..-.
T Consensus        99 ~~~~~~~l~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1          99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             SSCCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             cCCceeeccCccCCccccceeeeccCCc-eEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccc
Confidence            87652 1222222344566789999994 666554 6678888876654322  0000000111111         1124


Q ss_pred             EEEEcCCCCceEEEEc
Q 035558          229 QLQWSSSQPDWVAIAF  244 (253)
Q Consensus       229 ~~~~~~~~~~~~~~~~  244 (253)
                      ++-|||+|++|+....
T Consensus       177 a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         177 AHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             EEEECTTSSEEEEEEE
T ss_pred             eEEECCCCCeEEEEEe
Confidence            6789999998876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=0.00037  Score=50.19  Aligned_cols=186  Identities=14%  Similarity=0.037  Sum_probs=108.5

Q ss_pred             eEEeecCcEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEE-EEeCCCeEEEEeccCce---eee-ee
Q 035558            7 LLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIG-TSSIDTTCTIWDIEREA---VDT-QL   81 (253)
Q Consensus         7 ~l~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~---~~~-~~   81 (253)
                      +|.+....|+..+++..    .....+.+ .     ..+.+++|+ ...+.|. +=...+.|+-.++....   ... .+
T Consensus         4 Ll~s~~~~I~~~~l~~~----~~~~~~~~-~-----~~~~~id~d-~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~   72 (266)
T d1ijqa1           4 LFFTNRHEVRKMTLDRS----EYTSLIPN-L-----RNVVALDTE-VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI   72 (266)
T ss_dssp             EEEECBSSEEEEETTSC----CCEEEECS-C-----SSEEEEEEE-TTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred             EEEECCCeEEEEECCCC----cceeeeCC-C-----CceEEEEEE-eCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE
Confidence            34444448998999874    32323333 2     457789999 5555444 43456677766664322   111 12


Q ss_pred             ecccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEE
Q 035558           82 IAHDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLD  159 (253)
Q Consensus        82 ~~~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d  159 (253)
                      ......+..|++.  .+++..+-...+.|.+.++...........   .......++++|..+.++.+-......|.-.+
T Consensus        73 ~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~---~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~  149 (266)
T d1ijqa1          73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (266)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC---CCCCcceEEEEcccCeEEEeccCCCcceeEec
Confidence            2223445677776  555666666778899999987653333322   22367889999955555554333322366666


Q ss_pred             CCCCCCCeeeec-ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCC
Q 035558          160 IRFPTLPVVELQ-RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      +....  ...+. ..-...+++++.+.+.++..+-...+.|...++....
T Consensus       150 ~dGs~--~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         150 LNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             TTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCc--eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            65432  33332 2335678999999875455565678899988886644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.14  E-value=0.00052  Score=49.19  Aligned_cols=88  Identities=9%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeC-CC-----eEEEEeccCcee
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSI-DT-----TCTIWDIEREAV   77 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-----~i~vwd~~~~~~   77 (253)
                      |+.+|-.++ .|.+.++..+    +. +.+..+.     +.+...+|| |+++.||-... ++     .|.+++..+++.
T Consensus        12 G~~v~f~~~~dl~~~d~~~g----~~-~~Lt~~~-----~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2          12 GDRIIFVCCDDLWEHDLKSG----ST-RKIVSNL-----GVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             TTEEEEEETTEEEEEETTTC----CE-EEEECSS-----SEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCCcEEEEECCCC----CE-EEEecCC-----CcccCEEEC-CCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            555555555 8888899885    43 3444454     567889999 89998875432 22     477778877765


Q ss_pred             eeeee------cccccEEEEEec-CCCeEEEEe
Q 035558           78 DTQLI------AHDKEVYDIAWG-GVGVFASVS  103 (253)
Q Consensus        78 ~~~~~------~~~~~v~~~~~~-~~~~l~~~~  103 (253)
                      .+...      ..........|+ +++.++...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            43221      112344677888 888887653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.0023  Score=45.77  Aligned_cols=159  Identities=8%  Similarity=-0.052  Sum_probs=93.1

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEE-EEeCCC--cEEEEEcCCCCC
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFA-SVSADG--SVRVFDLRDKEH  118 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~dg--~i~i~d~~~~~~  118 (253)
                      ..+.++++....+++.++-...+.|.+.++........+...-..+..++.. ...++. +-...+  .|.--++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            4567888874455555666667899999987554333233333567889988 444444 432222  344445655443


Q ss_pred             eeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCc
Q 035558          119 STIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       119 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      .....   ..-.....+++++ .++.|..+....+.|...|+..... ...+.+. ....+|++. ++ ++..+-...+.
T Consensus       159 ~~i~~---~~~~~P~glaiD~-~~~~lYw~d~~~~~I~~~~~~g~~~-~~v~~~~-~~P~~lav~-~~-~lYwtd~~~~~  230 (263)
T d1npea_         159 RILAQ---DNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGR-RKVLEGL-QYPFAVTSY-GK-NLYYTDWKTNS  230 (263)
T ss_dssp             EEEEC---TTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEE-EEEEECC-CSEEEEEEE-TT-EEEEEETTTTE
T ss_pred             eeeee---ecccccceEEEee-cCcEEEEEeCCCCEEEEEECCCCCe-EEEECCC-CCcEEEEEE-CC-EEEEEECCCCE
Confidence            32221   1223567899998 5666666554444488888875432 2222222 234578776 23 45566667788


Q ss_pred             EEEEeccCCCC
Q 035558          199 ALIWDLSSMGQ  209 (253)
Q Consensus       199 i~iwd~~~~~~  209 (253)
                      |...|..+++.
T Consensus       231 I~~~~~~~g~~  241 (263)
T d1npea_         231 VIAMDLAISKE  241 (263)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCcc
Confidence            88888877653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.59  E-value=0.0078  Score=45.62  Aligned_cols=193  Identities=11%  Similarity=0.063  Sum_probs=115.7

Q ss_pred             CCCEEEEEe-CCCeEEEEeccCceeeeeeec-ccccEEEEEec---CCCeEEEEeCC------------------CcEEE
Q 035558           54 EPRRIGTSS-IDTTCTIWDIEREAVDTQLIA-HDKEVYDIAWG---GVGVFASVSAD------------------GSVRV  110 (253)
Q Consensus        54 ~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~---~~~~l~~~~~d------------------g~i~i  110 (253)
                      +|++++... .+++|-+-|+.+.+..+.+.. ....+..++..   +..+++..+.+                  +.+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            467777665 577899999998887554432 23456666665   44566666553                  23567


Q ss_pred             EEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeC--------------------------------------C
Q 035558          111 FDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMD--------------------------------------S  152 (253)
Q Consensus       111 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--------------------------------------~  152 (253)
                      +|..+.+....+...    +....+++++ +++++++.+.+                                      +
T Consensus       178 ID~~tm~V~~QV~V~----g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS----GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EETTTTEEEEEEEES----SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EecCCceEEEEeeeC----CChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            788776643333222    1455788999 88888877643                                      2


Q ss_pred             CeEEEEECCCCC--CCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCC----eeeccCCCc
Q 035558          153 AKVVVLDIRFPT--LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDP----ILAYTAGAE  226 (253)
Q Consensus       153 ~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~  226 (253)
                      + +.+.|.++..  ..+..+. -......+.++|||..+++++..+.++.|+|++...........+    ......+-.
T Consensus       253 g-V~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         253 G-VKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             T-EEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             C-ceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence            3 4555554321  1122222 233457789999995444566689999999998543221110111    111123455


Q ss_pred             eeEEEEcCCCCceEEEEcCCcEEEEEC
Q 035558          227 IEQLQWSSSQPDWVAIAFSTKLQILRV  253 (253)
Q Consensus       227 v~~~~~~~~~~~~~~~~~~~~i~vw~l  253 (253)
                      ...-+|...|..+.+.--|..|.-|++
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             ccccccCCCceEEEEeeccceEEEEec
Confidence            667789888754556667888888874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.30  E-value=0.0012  Score=47.17  Aligned_cols=99  Identities=7%  Similarity=-0.041  Sum_probs=60.0

Q ss_pred             EeeCCC--CCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEe-cCCC-----cEEEEeccCC
Q 035558          136 GWNKQD--PRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA-GDDS-----QALIWDLSSM  207 (253)
Q Consensus       136 ~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg-----~i~iwd~~~~  207 (253)
                      ..+| +  |+.++..+ ++. |.++|+..+.  ...+..+.......+|+||| +.|+.. ..++     .|.+++...+
T Consensus         5 ~~sP-di~G~~v~f~~-~~d-l~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNP-DIHGDRIIFVC-CDD-LWEHDLKSGS--TRKIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEE-EEETTEEEEEE-TTE-EEEEETTTCC--EEEEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCC-CCCCCEEEEEe-CCc-EEEEECCCCC--EEEEecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEEecCC
Confidence            3467 6  77777654 445 9999998755  45666677788999999999 566543 2222     3666666555


Q ss_pred             CCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          208 GQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                      ..... .................+|+|+++.++.
T Consensus        79 ~~~~l-t~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          79 EIKRI-TYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             EEEEC-CCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             ceEEe-eecCCCccCccccccccccCCCCCEEEE
Confidence            42210 0001111122334567889999986654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.08  E-value=0.035  Score=42.05  Aligned_cols=191  Identities=14%  Similarity=0.051  Sum_probs=112.7

Q ss_pred             CCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-CCCCEEEEEeCCC--------------
Q 035558            4 KPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-AEPRRIGTSSIDT--------------   65 (253)
Q Consensus         4 ~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg--------------   65 (253)
                      ||++|.....   .|-+-|++..    +..+++.....    ..+..++..+ ++..+++.++.+.              
T Consensus        98 DGrylFVNDkan~RVAvIdl~~f----kt~kIi~iPn~----~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~  169 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVM----KCDAILEIPNA----KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  169 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT----EEEEEEECSSC----CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             ceeEEEEEcCCCceEEEEECcce----eeeEEEecCCC----CCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence            5777777663   8888888875    55554433221    3456666542 4566777766533              


Q ss_pred             ----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC-----------------------------------
Q 035558           66 ----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD-----------------------------------  105 (253)
Q Consensus        66 ----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-----------------------------------  105 (253)
                          .+.+.|.++.+....+.- ......+.++ +++++++.+.+                                   
T Consensus       170 ~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         170 NYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             -EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                256788888776655542 2345667888 88888776643                                   


Q ss_pred             ---CcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-------Ceeee---cc
Q 035558          106 ---GSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-------PVVEL---QR  172 (253)
Q Consensus       106 ---g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-------~~~~~---~~  172 (253)
                         +-+.+.|.+...........+.. .....+.++| +++++++++.-..++.++|+++...       +...+   ..
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             EEeCCceeecccccCCcceeEEEecC-CCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence               12333343321100111000001 1344688999 9999998887666699999974321       11111   11


Q ss_pred             cccceeEEEEecCCCCeEEEecCCCcEEEEeccC
Q 035558          173 HQASVNAIAWAPHSSCHICTAGDDSQALIWDLSS  206 (253)
Q Consensus       173 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  206 (253)
                      ..-....-+|+..| +-..+.--|..|.-|++..
T Consensus       327 lglgPLht~fd~~g-~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         327 LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             cCcCccccccCCCc-eEEEEeeccceEEEEecch
Confidence            12234556888887 5666777899999999864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.026  Score=40.55  Aligned_cols=221  Identities=9%  Similarity=0.124  Sum_probs=129.3

Q ss_pred             CCceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCCCeEEEEeccCc-eeeeee
Q 035558            4 KPDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERE-AVDTQL   81 (253)
Q Consensus         4 ~~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~   81 (253)
                      +..+||--++ +++++|++..    +.++...-.      .+|.--.|-  +.+.|+..+. ..|+-|+++.. .+.+.+
T Consensus        73 ~~~IiALrag~~LQiFnletK----~klks~~~~------e~VvfWkWi--s~~~L~lVT~-taVYHW~~~g~s~P~k~f  139 (327)
T d1utca2          73 ASKVIALKAGKTLQIFNIEMK----SKMKAHTMT------DDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMF  139 (327)
T ss_dssp             SSSEEEEEETTEEEEEETTTT----EEEEEEECS------SCCCEEEES--SSSEEEEECS-SEEEEEESSSSCCCEEEE
T ss_pred             CCcEEEEecCCeEEEEehhHh----hhhceEEcC------CCcEEEEec--CCCEEEEEcC-CceEEEcccCCCCchhhh
Confidence            4456666555 9999999986    555555544      467777885  5677777764 58999999643 344445


Q ss_pred             eccc----ccEEEEEec-CCCeEEEEe-------CCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEee--CCCCCEEEE
Q 035558           82 IAHD----KEVYDIAWG-GVGVFASVS-------ADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWN--KQDPRYMAT  147 (253)
Q Consensus        82 ~~~~----~~v~~~~~~-~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~  147 (253)
                      ..|.    ..|-.-..+ +.+.++..+       -.|.+.+|..+.+..    ....+|.+....+.+.  +....+++.
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~f  215 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCF  215 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE----EEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC----ccccceeeeeEEEEcCCCCCCceEEEE
Confidence            4443    344444444 666555432       136788888876531    1122332222222221  111123333


Q ss_pred             EEe--CCCeEEEEECCCCCC---C--ee--ee-c---ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCC
Q 035558          148 IIM--DSAKVVVLDIRFPTL---P--VV--EL-Q---RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGG  214 (253)
Q Consensus       148 ~~~--~~~~i~~~d~~~~~~---~--~~--~~-~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  214 (253)
                      +..  .+..+++.++.....   +  .+  .+ .   ...+..-+|..++.-+ .++.-+.-|.|.+||++++....   
T Consensus       216 a~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~---  291 (327)
T d1utca2         216 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY---  291 (327)
T ss_dssp             EEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE---
T ss_pred             EECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEE---
Confidence            332  222488988876321   1  11  11 1   1234566788888774 88888899999999999988554   


Q ss_pred             CCCeeeccCCCceeEEEEcCCCCceEEEEcCCcEE
Q 035558          215 LDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQ  249 (253)
Q Consensus       215 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~  249 (253)
                          ...-...+|..-+-......+++....|.+.
T Consensus       292 ----~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         292 ----MNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ----EEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ----EeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence                3333455665555555555688888877664

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.86  E-value=0.021  Score=45.57  Aligned_cols=78  Identities=15%  Similarity=0.134  Sum_probs=43.2

Q ss_pred             EEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcC
Q 035558          155 VVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSS  234 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  234 (253)
                      +.-+|+.+++. +-+...+ .++.+-..+..+ .++++|+.||.++.+|.++++..-      ....+....-.-+.+..
T Consensus       468 l~AiD~~TG~i-~W~~~~~-~p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~LW------~~~~~~~~~~~P~ty~~  538 (582)
T d1flga_         468 LRAMDPVSGKV-VWEHKEH-LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELW------KFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             EEEECTTTCCE-EEEEEES-SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEE------EEECSSCCCSCCEEEEE
T ss_pred             EEEEcCCCCcE-EeecCCC-CCCccceeEEcC-CeEEEeCCCCeEEEEECCCCcEeE------EEECCCCccccCEEEEE
Confidence            66677776543 3333222 222222233445 388889999999999999998543      11111111111246667


Q ss_pred             CCCceEE
Q 035558          235 SQPDWVA  241 (253)
Q Consensus       235 ~~~~~~~  241 (253)
                      +|+++++
T Consensus       539 ~G~qYv~  545 (582)
T d1flga_         539 DGEQYLG  545 (582)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            8865553

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.042  Score=39.01  Aligned_cols=160  Identities=9%  Similarity=-0.068  Sum_probs=97.9

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEe--CCCcEEEEEcCCCCCee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVS--ADGSVRVFDLRDKEHST  120 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~  120 (253)
                      .+.++++.+..+++.++-...+.|.+.++........+.........++.+ ...++.-..  ..+.|.-.++.......
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~  157 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence            455777764566666666677899999998665544455455667888888 444444332  34567667776554322


Q ss_pred             eeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee--cccccceeEEEEecCCCCeEEEecCCCc
Q 035558          121 IIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL--QRHQASVNAIAWAPHSSCHICTAGDDSQ  198 (253)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~  198 (253)
                      .. .  ..-.....+++++ .++.|..+......|...|+..... ....  ........++++.. + .+..+-..++.
T Consensus       158 l~-~--~~~~~p~gl~iD~-~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~-~-~ly~td~~~~~  230 (266)
T d1ijqa1         158 LV-T--ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEA  230 (266)
T ss_dssp             EE-C--SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-T-EEEEEETTTTE
T ss_pred             cc-c--cccceeeEEEeec-cccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEEC-C-EEEEEECCCCe
Confidence            22 2  1123578899998 5666666555444499999865442 2222  22223456787773 3 46666667888


Q ss_pred             EEEEeccCCCCC
Q 035558          199 ALIWDLSSMGQP  210 (253)
Q Consensus       199 i~iwd~~~~~~~  210 (253)
                      |...+..++...
T Consensus       231 I~~~~~~~g~~~  242 (266)
T d1ijqa1         231 IFSANRLTGSDV  242 (266)
T ss_dssp             EEEEETTTCCCC
T ss_pred             EEEEECCCCcce
Confidence            888887776543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.72  E-value=0.014  Score=43.63  Aligned_cols=98  Identities=13%  Similarity=0.040  Sum_probs=59.9

Q ss_pred             EEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCC-CeeeecccccceeEEEEecCC
Q 035558          108 VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTL-PVVELQRHQASVNAIAWAPHS  186 (253)
Q Consensus       108 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~  186 (253)
                      +.+||..++.-.........+.......++.+ ++.+++.|+.+...+.+||..+..- ....+.. ...-.+++..+++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~~~~dG  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDG  131 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTS
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccc-cccccceeeecCC
Confidence            67899998763322211122222344566777 8899998887766699999987431 1111111 1122456777888


Q ss_pred             CCeEEEecCC------CcEEEEeccCCC
Q 035558          187 SCHICTAGDD------SQALIWDLSSMG  208 (253)
Q Consensus       187 ~~~l~~~~~d------g~i~iwd~~~~~  208 (253)
                       ++++.|+.+      ..+.+||..+..
T Consensus       132 -~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         132 -RVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             -CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             -ceeeeccccccccccceeeeecCCCCc
Confidence             688887743      468899987653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.70  E-value=0.069  Score=39.68  Aligned_cols=225  Identities=7%  Similarity=-0.035  Sum_probs=109.7

Q ss_pred             CCceEEeecC---cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEeCC------CeEEEEeccC
Q 035558            4 KPDLLATSSD---FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSID------TTCTIWDIER   74 (253)
Q Consensus         4 ~~~~l~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~   74 (253)
                      ++.+++.|+.   .+.+||..+.  .......+....      .-.+.+.. .+++.++.|+.+      ..+.+||..+
T Consensus        86 ~g~i~v~Gg~~~~~~~~yd~~~~--~w~~~~~~~~~r------~~~~~~~~-~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          86 NGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVAR------GYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCC------SSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             CCcEEEeecCCCcceeEecCccC--cccccccccccc------cccceeee-cCCceeeeccccccccccceeeeecCCC
Confidence            6777777763   9999999874  222222222211      12244444 688888888643      3688999887


Q ss_pred             ceeee--eee-------ccccc----EEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccC-----CCCCCeeE
Q 035558           75 EAVDT--QLI-------AHDKE----VYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYESS-----EPDTPLVR  134 (253)
Q Consensus        75 ~~~~~--~~~-------~~~~~----v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~i~~  134 (253)
                      .+-..  ...       .+...    -....+.  +++.+..++.++.+..+|..+...........     .....-.+
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  236 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence            65211  110       00000    0111222  56677777777777777776654221111000     00011223


Q ss_pred             EEeeCCCCCEEEEEEeCCC-------eEEEEECCCCCCC---eeeec--ccccceeEEEEecCCCCeEEEecCC------
Q 035558          135 LGWNKQDPRYMATIIMDSA-------KVVVLDIRFPTLP---VVELQ--RHQASVNAIAWAPHSSCHICTAGDD------  196 (253)
Q Consensus       135 ~~~~~~~~~~l~~~~~~~~-------~i~~~d~~~~~~~---~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d------  196 (253)
                      +.+...+++.++.++....       ...+.++......   .....  .....-.+....+++ ++++.|+.+      
T Consensus       237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg-~i~v~GG~~~~~~~~  315 (387)
T d1k3ia3         237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFE  315 (387)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTC
T ss_pred             EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCC-eEEEECCcccCccCC
Confidence            3444446677777764321       1334443322111   11110  011122345566888 688888843      


Q ss_pred             -----CcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEEEE
Q 035558          197 -----SQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIA  243 (253)
Q Consensus       197 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  243 (253)
                           .++.+||..+.+-... ...+.....|.    .....++|+.++.++
T Consensus       316 ~~~~~~~ve~Ydp~~~~W~~~-~~~~~~R~~Hs----~a~l~~dG~v~v~GG  362 (387)
T d1k3ia3         316 DSTPVFTPEIYVPEQDTFYKQ-NPNSIVRVYHS----ISLLLPDGRVFNGGG  362 (387)
T ss_dssp             CCSBCCCCEEEEGGGTEEEEC-CCCSSCCCTTE----EEEECTTSCEEEEEC
T ss_pred             CCcEeceEEEEECCCCeEEEC-CCCCCcccceE----EEEECCCCEEEEEeC
Confidence                 1477899877542110 00111111232    233578998777766

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.57  E-value=0.071  Score=38.27  Aligned_cols=186  Identities=10%  Similarity=0.172  Sum_probs=108.0

Q ss_pred             CceEEeecC-cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecCCCCCEEEEEe-------CCCeEEEEeccCce
Q 035558            5 PDLLATSSD-FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSS-------IDTTCTIWDIEREA   76 (253)
Q Consensus         5 ~~~l~~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~   76 (253)
                      .+.|+--.+ .|+-|+++..   ..+.+.+..|..-. ...|..-..+ ++.++++..+       -.|.+.+|..+.. 
T Consensus       113 ~~~L~lVT~taVYHW~~~g~---s~P~k~fdR~~~L~-~~QIInY~~d-~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-  186 (327)
T d1utca2         113 LNTVALVTDNAVYHWSMEGE---SQPVKMFDRHSSLA-GCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYSVDRK-  186 (327)
T ss_dssp             SSEEEEECSSEEEEEESSSS---CCCEEEEECCGGGT-TCEEEEEEEC-TTSCEEEEEEEEEETTEEEEEEEEEETTTT-
T ss_pred             CCEEEEEcCCceEEEcccCC---CCchhhhhhccccc-CceEEEEEEC-CCCCEEEEEeEecCCCceeEEEEEEEeccC-
Confidence            445665565 9999999653   24566666665332 2467777777 7777766442       2357889988744 


Q ss_pred             eeeeeecccccEEEEEec-CC---CeEEEE---eCCCcEEEEEcCCCCC--e-------eeeeccCCCCCCeeEEEeeCC
Q 035558           77 VDTQLIAHDKEVYDIAWG-GV---GVFASV---SADGSVRVFDLRDKEH--S-------TIIYESSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        77 ~~~~~~~~~~~v~~~~~~-~~---~~l~~~---~~dg~i~i~d~~~~~~--~-------~~~~~~~~~~~~i~~~~~~~~  140 (253)
                      .-+.+.+|...-..+... +.   .+|+.+   ...+++++-++.....  .       ...........-..++..++ 
T Consensus       187 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-  265 (327)
T d1utca2         187 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-  265 (327)
T ss_dssp             EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-
T ss_pred             cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-
Confidence            455677776655555554 11   233333   2236889999876321  0       11112223344566788888 


Q ss_pred             CCCEEEEEEeCCCeEEEEECCCCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEE
Q 035558          141 DPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQAL  200 (253)
Q Consensus       141 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  200 (253)
                      .-..+..-+.-|. +++||+.++.. +..-+--...|...+-..+.. =+++...+|.|.
T Consensus       266 kygiiyviTK~G~-i~lyDleTgt~-i~~nRIs~~~iF~~a~~~~~~-Gi~~VNr~GqVl  322 (327)
T d1utca2         266 KHDVVFLITKYGY-IHLYDLETGTC-IYMNRISGETIFVTAPHEATA-GIIGVNRKGQVL  322 (327)
T ss_dssp             TTTEEEEEETTSE-EEEEETTTCCE-EEEEECCSSCEEEEEEETTTT-EEEEEETTSEEE
T ss_pred             cCCEEEEEecCcE-EEEEEcccccE-EEEeecCCCceEEeccCCCCc-eEEEECCCCeEE
Confidence            5667777777777 99999998763 444433344444333333321 233334555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.48  E-value=0.12  Score=40.97  Aligned_cols=55  Identities=7%  Similarity=0.053  Sum_probs=35.4

Q ss_pred             CeEEEEeccCceeeeeeeccccc-----------EEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKE-----------VYDIAWG--GVGVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                      ..|.-.|+++++....++.....           ...+...  ....++.+..+|.+.++|..+++..
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence            35667788888877665532211           1223333  2346777889999999999988743

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.97  E-value=0.27  Score=38.93  Aligned_cols=55  Identities=7%  Similarity=0.017  Sum_probs=36.1

Q ss_pred             CeEEEEeccCceeeeeeecccc-----------cEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCe
Q 035558           65 TTCTIWDIEREAVDTQLIAHDK-----------EVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                      ..+...|.++++.+..++....           ....+...  ....++.++.+|.+.++|..+++.+
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence            4577789999988776663221           12223333  1235678889999999999888743

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.90  E-value=0.2  Score=36.81  Aligned_cols=186  Identities=11%  Similarity=0.050  Sum_probs=101.2

Q ss_pred             EEEecCCCCCEEEEEeC------------CCeEEEEeccCceee-eee--ecc-----cccEEEEEec---CCC-eEEEE
Q 035558           47 SFDWNEAEPRRIGTSSI------------DTTCTIWDIEREAVD-TQL--IAH-----DKEVYDIAWG---GVG-VFASV  102 (253)
Q Consensus        47 ~~~~~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~-~~~--~~~-----~~~v~~~~~~---~~~-~l~~~  102 (253)
                      ++... +++..+++++.            .|.|.++|+.+.+.. ..+  .+.     .-....+...   ++. +|++.
T Consensus        39 Di~~~-~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          39 DLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             EEEEC-TTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             eEEEC-CCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            56676 67766665532            489999998765421 111  111     1233555543   444 34444


Q ss_pred             ---eCCCcEEEEEcCCCCCeee-eecc-CCCCCCeeEEEeeCCCCCEEEEEEe--C-------------CC-eEEEEECC
Q 035558          103 ---SADGSVRVFDLRDKEHSTI-IYES-SEPDTPLVRLGWNKQDPRYMATIIM--D-------------SA-KVVVLDIR  161 (253)
Q Consensus       103 ---~~dg~i~i~d~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~--~-------------~~-~i~~~d~~  161 (253)
                         ....+|.+|++........ .... .......+.+++.. ++.++++-..  .             .. .+..||..
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence               2456788998875543211 1111 12223578888887 7777776311  0             11 14444432


Q ss_pred             CCCCCeeeecccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceEE
Q 035558          162 FPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVA  241 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  241 (253)
                        .  .......-...+.++++|++..++++-+..++|++|++.......     ......-...+-.+.+.+.+..+.+
T Consensus       197 --~--~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~-----~~~~~~l~~~pDNi~~d~~~g~lwv  267 (340)
T d1v04a_         197 --D--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT-----PLRVLSFDTLVDNISVDPVTGDLWV  267 (340)
T ss_dssp             --C--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE-----EEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             --c--eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccc-----eEEEecCCCCCCccEEecCCCEEEE
Confidence              2  333333345689999999985455677788999999997644221     1122223455667777654333444


Q ss_pred             EE
Q 035558          242 IA  243 (253)
Q Consensus       242 ~~  243 (253)
                      ++
T Consensus       268 a~  269 (340)
T d1v04a_         268 GC  269 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.23  Score=36.98  Aligned_cols=140  Identities=10%  Similarity=0.065  Sum_probs=79.6

Q ss_pred             CeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558           44 PLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIY  123 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  123 (253)
                      .|..++|+   ++.++.. .++.+..++............-..++.++.++ ...++....++.+.++++...+......
T Consensus        88 ~v~~vafs---~d~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-p~~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFH---GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNV-NNTLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEE---TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEee---CCEEEEE-eCCCEEEEEeeccccccccccccccccceecC-CceeEEEecCCCEEEEEeccCccccccC
Confidence            57889987   3445554 45668888876654444444445677888776 4556677778999999998876332221


Q ss_pred             c--cCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEE-ECCCCCCCeeeecccccceeEEEEecCCCCeEEEe
Q 035558          124 E--SSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVL-DIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTA  193 (253)
Q Consensus       124 ~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~-d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  193 (253)
                      .  .....+.+.+++|++ .+..++++..+.  ..+- ++..... +.........+.++.|-.+. .++++-
T Consensus       163 ~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~~--~q~k~~i~~~~~-~~~p~~~~~~v~sI~WL~~~-~F~vvy  230 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKD-RSFQSFAWRNGE--MEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQ-DFLAVF  230 (381)
T ss_dssp             SEEEEEECSSEEEEEETT-SCEEEEEEETTE--EEEEEEECCCHH-HHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred             CcceEEecCCceEEEEeC-CcEEEEEeCCCc--eeeccCCCCccc-cCCCcCCCcceeEEEEecCc-eEEEEE
Confidence            0  001124677888887 676676653222  2221 2211110 11111133467889998775 455433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.76  E-value=0.23  Score=36.58  Aligned_cols=188  Identities=11%  Similarity=0.132  Sum_probs=102.4

Q ss_pred             ceEEeecC--cEEEEEccCCccccceeeeecCCCCccccCCeeEEEecC-----CCCCEEEEEe-CC---CeEEEEeccC
Q 035558            6 DLLATSSD--FLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNE-----AEPRRIGTSS-ID---TTCTIWDIER   74 (253)
Q Consensus         6 ~~l~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~-~d---g~i~vwd~~~   74 (253)
                      .++++..+  -|.+||++.     +.+..+..       +.++.|..-.     ....-++.++ .+   .+|.+|.+..
T Consensus        41 SlI~gTdK~~Gl~vYdL~G-----~~l~~~~~-------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~  108 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEG-----KMLHSYHT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (353)
T ss_dssp             CEEEEEETTSCCEEEETTC-----CEEEECCS-------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEET
T ss_pred             cEEEEEcCcCCEEEEcCCC-----cEEEeccc-------CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecC
Confidence            35555443  899999976     55555442       3444444320     1222344554 22   3677887753


Q ss_pred             c-eeeeeeec-------ccccEEEEEe--c--CCC-eEEEEeCCCcEEEEEcCCCCC----eeeeeccCCCCCCeeEEEe
Q 035558           75 E-AVDTQLIA-------HDKEVYDIAW--G--GVG-VFASVSADGSVRVFDLRDKEH----STIIYESSEPDTPLVRLGW  137 (253)
Q Consensus        75 ~-~~~~~~~~-------~~~~v~~~~~--~--~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~i~~~~~  137 (253)
                      . ..+..+..       -...+..+|+  +  ++. +++....+|.+..|.+.....    ...+... .....+..|.+
T Consensus       109 ~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVv  187 (353)
T d1h6la_         109 KNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAA  187 (353)
T ss_dssp             TTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEE
T ss_pred             cccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEE
Confidence            2 22222221       1224667777  3  344 456677799999998753321    1122222 22337888999


Q ss_pred             eCCCCCEEEEEEeCCCeEEEEECCCCC--CC--eeeec--ccccceeEEEEec--CCC-CeEEEecCCCcEEEEeccCCC
Q 035558          138 NKQDPRYMATIIMDSAKVVVLDIRFPT--LP--VVELQ--RHQASVNAIAWAP--HSS-CHICTAGDDSQALIWDLSSMG  208 (253)
Q Consensus       138 ~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~--~~~~~--~~~~~i~~~~~~~--~~~-~~l~~~~~dg~i~iwd~~~~~  208 (253)
                      .+ ....|..+-.+.+ |..++..-..  ..  +....  .....+-.|+.-.  ++. .++++.-.+++..+||.....
T Consensus       188 Dd-e~~~LyisEE~~G-iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         188 DD-EYGSLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             ET-TTTEEEEEETTTE-EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             eC-CCCcEEEecCccc-eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            98 6677777776666 7777765322  11  11111  1234566666442  322 344555578999999998753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.59  E-value=0.19  Score=39.82  Aligned_cols=25  Identities=4%  Similarity=0.061  Sum_probs=21.3

Q ss_pred             CCCCeEEEecCCCcEEEEeccCCCCC
Q 035558          185 HSSCHICTAGDDSQALIWDLSSMGQP  210 (253)
Q Consensus       185 ~~~~~l~~~~~dg~i~iwd~~~~~~~  210 (253)
                      .+ .++++|+.||.++.+|.++++..
T Consensus       487 ag-glVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         487 AG-NVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             TT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             cC-CEEEEECCCCeEEEEECCCCcEe
Confidence            45 38888999999999999999854

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.33  E-value=0.34  Score=35.65  Aligned_cols=197  Identities=9%  Similarity=0.133  Sum_probs=104.7

Q ss_pred             EEEecC--CCCCEEEEEeCCCeEEEEeccCceeeeeeecccccEEEEE------ec-CCCeEEEEeC--C--CcEEEEEc
Q 035558           47 SFDWNE--AEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIA------WG-GVGVFASVSA--D--GSVRVFDL  113 (253)
Q Consensus        47 ~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~------~~-~~~~l~~~~~--d--g~i~i~d~  113 (253)
                      ++-++|  |+..+++.....+-|++||++ |+.++.+.  .+.+..+.      .. ...-++.++.  +  .+|.+|.+
T Consensus        30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i  106 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (353)
T ss_dssp             EEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred             eEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence            444554  345677777777779999996 77666654  23444333      22 2223444442  2  35888887


Q ss_pred             CCCCCe-eeeeccC----CCCCCeeEEEe--eCCCCCEEEEEEeCCCeEEEEECCCCCC------CeeeecccccceeEE
Q 035558          114 RDKEHS-TIIYESS----EPDTPLVRLGW--NKQDPRYMATIIMDSAKVVVLDIRFPTL------PVVELQRHQASVNAI  180 (253)
Q Consensus       114 ~~~~~~-~~~~~~~----~~~~~i~~~~~--~~~~~~~l~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~i~~~  180 (253)
                      ...... ..+....    .....++.+++  +|.++.+.+......+.+..|.+.....      .+..+. -...+-++
T Consensus       107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGC  185 (353)
T d1h6la_         107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGM  185 (353)
T ss_dssp             ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEE
T ss_pred             cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceE
Confidence            643311 1111100    11124667776  6656665555555444488887643221      122332 24567889


Q ss_pred             EEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCee-ec---cCCCceeEEEEc--CCCC-ceEEEE-cCCcEEEEE
Q 035558          181 AWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPIL-AY---TAGAEIEQLQWS--SSQP-DWVAIA-FSTKLQILR  252 (253)
Q Consensus       181 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~---~~~~~v~~~~~~--~~~~-~~~~~~-~~~~i~vw~  252 (253)
                      .+.+.. ..|+.+-++..|..++........    .... ..   .....+-.|+.-  +++. +|++++ .++...||+
T Consensus       186 VvDde~-~~LyisEE~~Giw~~~a~~~~~~~----~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         186 AADDEY-GSLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EEETTT-TEEEEEETTTEEEEEESSTTSCSC----CEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EEeCCC-CcEEEecCccceEEEEeccCCCcc----ceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            999987 588888887766555554222111    0111 11   134566677643  3333 555443 566777775

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.3  Score=34.28  Aligned_cols=22  Identities=14%  Similarity=0.215  Sum_probs=14.5

Q ss_pred             CCCCceE-Eeec-C-----cEEEEEccCC
Q 035558            2 CQKPDLL-ATSS-D-----FLRVWRISDE   23 (253)
Q Consensus         2 p~~~~~l-~~~~-~-----~v~iw~~~~~   23 (253)
                      |+.|+.| +.|+ +     .+.+||+.+.
T Consensus         1 ~~~g~~iyv~GG~~~~~~~~~~~yd~~t~   29 (288)
T d1zgka1           1 PKVGRLIYTAGGYFRQSLSYLEAYNPSNG   29 (288)
T ss_dssp             CCCCCCEEEECCBSSSBCCCEEEEETTTT
T ss_pred             CCcCCEEEEECCcCCCCCceEEEEECCCC
Confidence            6666666 3343 2     7889999884

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.07  E-value=1.1  Score=35.58  Aligned_cols=54  Identities=11%  Similarity=-0.020  Sum_probs=35.0

Q ss_pred             eEEEEeccCceeeeeeeccc---------ccEEEEEe-c-CC---CeEEEEeCCCcEEEEEcCCCCCe
Q 035558           66 TCTIWDIEREAVDTQLIAHD---------KEVYDIAW-G-GV---GVFASVSADGSVRVFDLRDKEHS  119 (253)
Q Consensus        66 ~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~-~-~~---~~l~~~~~dg~i~i~d~~~~~~~  119 (253)
                      .|.-.|+++++.+..++...         ..+.-+.. . ++   ..++....+|.+.++|..+++.+
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCcee
Confidence            47778999999877665321         11111111 1 22   36778889999999999988743

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=1.5  Score=32.54  Aligned_cols=176  Identities=10%  Similarity=0.013  Sum_probs=93.2

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCce---------eeeeeecccccEEEEEecCCCeEEEEeCCCcEEEEEc
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA---------VDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDL  113 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i~d~  113 (253)
                      ....-++.+ ....++++|+.++ +.|-..+.-+         .....+..-..|..++|+ ++.++.. .++.+..++.
T Consensus        37 ~~~~LLAVs-n~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs-~d~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDIS-NSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFH-GDQVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEE-TTEEEEE-ESSEEEEEES
T ss_pred             cccceEEEe-CCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEee-CCEEEEE-eCCCEEEEEe
Confidence            345667777 6677888888775 6676643210         001111112358888887 3344443 4556888888


Q ss_pred             CCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeeec------ccccceeEEEEecCCC
Q 035558          114 RDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQ------RHQASVNAIAWAPHSS  187 (253)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~  187 (253)
                      ...........   ...++..+.++|   ..++....++. +.++++.....  ..+.      .-.+.+.+++|++.+ 
T Consensus       113 ~~l~~~~~~~~---~~~~~~~~~~~p---~~~~l~~~~~~-~~~~~l~~~~~--~~~~~~v~~~~~~~~~~~v~ws~kg-  182 (381)
T d1xipa_         113 EELSEFRTVTS---FEKPVFQLKNVN---NTLVILNSVND-LSALDLRTKST--KQLAQNVTSFDVTNSQLAVLLKDRS-  182 (381)
T ss_dssp             SSTTCEEEEEE---CSSCEEEEEECS---SEEEEEETTSE-EEEEETTTCCE--EEEEESEEEEEECSSEEEEEETTSC-
T ss_pred             ecccccccccc---ccccccceecCC---ceeEEEecCCC-EEEEEeccCcc--ccccCCcceEEecCCceEEEEeCCc-
Confidence            77553333222   223678888876   34555566666 88999887642  1111      112446667777666 


Q ss_pred             CeEEEecCCCcEEEE-eccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCceE
Q 035558          188 CHICTAGDDSQALIW-DLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWV  240 (253)
Q Consensus       188 ~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  240 (253)
                      ..++++..+ ...+- ++......       .........|.+|.|-.+...++
T Consensus       183 kq~v~~~g~-~~q~k~~i~~~~~~-------~~p~~~~~~v~sI~WL~~~~F~v  228 (381)
T d1xipa_         183 FQSFAWRNG-EMEKQFEFSLPSEL-------EELPVEEYSPLSVTILSPQDFLA  228 (381)
T ss_dssp             EEEEEEETT-EEEEEEEECCCHHH-------HTSCTTTSEEEEEEESSSSEEEE
T ss_pred             EEEEEeCCC-ceeeccCCCCcccc-------CCCcCCCcceeEEEEecCceEEE
Confidence            455555322 11111 11111000       00112345788999987765443

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=91.71  E-value=1.9  Score=32.16  Aligned_cols=154  Identities=8%  Similarity=0.006  Sum_probs=78.9

Q ss_pred             ccccEEEEEec--CCCeEEEEeCCCcEEEEEcCCCCCeeeeec----cCCCCCCeeEEEeeCCCCCEEEEEEeCC---Ce
Q 035558           84 HDKEVYDIAWG--GVGVFASVSADGSVRVFDLRDKEHSTIIYE----SSEPDTPLVRLGWNKQDPRYMATIIMDS---AK  154 (253)
Q Consensus        84 ~~~~v~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~~  154 (253)
                      -.+.|.+|+++  +.+++.++...|-|..-+ ..++....+..    .......+.+|+++|.+.+.+.++..+.   ..
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~   88 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   88 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence            35789999999  777888887766553322 23332222211    1112236889999997777776654321   00


Q ss_pred             EEEEECCCCCCCeeeec---------ccccceeEEEEecCCCCeEEEecCCCcEEEEeccCCCCCCCCCCCCeeeccCCC
Q 035558          155 VVVLDIRFPTLPVVELQ---------RHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGA  225 (253)
Q Consensus       155 i~~~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  225 (253)
                      ..+|--....+.-..+.         ........+.++|..+..+..++.++.|  |........-..............
T Consensus        89 ~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl--~~S~D~G~tW~~~~~~~~~~~~~~  166 (427)
T d2ebsa1          89 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGI  166 (427)
T ss_dssp             CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE--EEESSTTSSCEECTTSSCCCCSSS
T ss_pred             ccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccce--eeecCCCceeeecccCcccccCCc
Confidence            23443332221111111         1122356689999876777777766554  433332221100000011122344


Q ss_pred             ceeEEEEcCCCCceE
Q 035558          226 EIEQLQWSSSQPDWV  240 (253)
Q Consensus       226 ~v~~~~~~~~~~~~~  240 (253)
                      .+..+.++|..+..+
T Consensus       167 ~~~~i~~~p~~~~~~  181 (427)
T d2ebsa1         167 GYTSVIFDPERNGTI  181 (427)
T ss_dssp             CEEEEEECTTSTTCE
T ss_pred             cceEEEeccccccee
Confidence            578899988765433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.65  E-value=0.68  Score=36.60  Aligned_cols=81  Identities=15%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC-
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP-  142 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  142 (253)
                      |.|.-+|+.+++.+...+.+ .++..-... .+.++++|+.||.++.+|.++++.+-............  +.|.. ++ 
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~-~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQ-DGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEE-TTE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEE-CCE
Confidence            56777888888877666532 222221223 67788889999999999999998554433322222222  34444 55 


Q ss_pred             CEEEEEE
Q 035558          143 RYMATII  149 (253)
Q Consensus       143 ~~l~~~~  149 (253)
                      +++++..
T Consensus       542 qYv~i~a  548 (582)
T d1flga_         542 QYLGVTV  548 (582)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5665544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.31  E-value=0.63  Score=36.58  Aligned_cols=84  Identities=10%  Similarity=0.033  Sum_probs=50.2

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCC-
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDP-  142 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  142 (253)
                      |.|.-+|+.+++.+..... ..+...-... .+.+++.|+.||.++.+|.++++.+-.........+..  +.+.. ++ 
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~-dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFEL-AGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEE-TTE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEE-CCE
Confidence            5678889888887766552 2222222233 57788889999999999999998554333332222222  33333 44 


Q ss_pred             CEEEEEEeCC
Q 035558          143 RYMATIIMDS  152 (253)
Q Consensus       143 ~~l~~~~~~~  152 (253)
                      ++|++....+
T Consensus       514 qyv~v~aG~g  523 (560)
T d1kv9a2         514 QYVAIMAGWG  523 (560)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEeCCC
Confidence            4555554433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.99  E-value=2.8  Score=32.83  Aligned_cols=109  Identities=9%  Similarity=0.093  Sum_probs=59.5

Q ss_pred             CCceEEeec-C-cEEEEEc-cCCccccceeeeecCCCCcccc-----CCe-eEEEecCCCCCEEEEEeCCCeEEEEeccC
Q 035558            4 KPDLLATSS-D-FLRVWRI-SDEDRRVELKSLLNGNKNSEYC-----GPL-TSFDWNEAEPRRIGTSSIDTTCTIWDIER   74 (253)
Q Consensus         4 ~~~~l~~~~-~-~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~-----~~v-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~   74 (253)
                      ++.+.++.+ + .|...|. +++    +.+..++........     ..+ ..+++.   +..++.++.||.+.-.|.++
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG----~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~---~~~i~~~~~~g~l~alda~t  134 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPG----KIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTT----SEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEecCCCCeEEEEeCCCCC----ceEEEecCCCCcccccccccCcCCCcceee---CCeEEEEeCCCcEEeeehhh
Confidence            455555554 4 7777776 356    445444321110000     001 234443   45677788999999999999


Q ss_pred             ceeeeeeeccc----ccEEEEEecCCCeEEEEe------CCCcEEEEEcCCCCCe
Q 035558           75 EAVDTQLIAHD----KEVYDIAWGGVGVFASVS------ADGSVRVFDLRDKEHS  119 (253)
Q Consensus        75 ~~~~~~~~~~~----~~v~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~  119 (253)
                      ++.........    ..++.--.--+..++.+.      .+|.|+-+|.++++..
T Consensus       135 G~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         135 GKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             hhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEE
Confidence            98766543211    111111011233444444      3788999999999843

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.84  E-value=0.7  Score=36.43  Aligned_cols=58  Identities=12%  Similarity=-0.005  Sum_probs=41.3

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeee
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIY  123 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  123 (253)
                      |.|.-||+.+++.+...+... +...=... .+.++++|+.||.++.+|.++++.+-...
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            468889999999887765322 22111223 67888899999999999999998544333

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.66  E-value=0.53  Score=37.39  Aligned_cols=85  Identities=8%  Similarity=-0.015  Sum_probs=49.5

Q ss_pred             CeEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCC
Q 035558           65 TTCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR  143 (253)
Q Consensus        65 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  143 (253)
                      |.|.-||+.+++.+.... +..+...=... .+.+++.|+.||.++.+|.++++.+-............  +.|..+..+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC--eEEEECCEE
Confidence            567888888888765543 22222222223 57788889999999999999998544433332222222  223332345


Q ss_pred             EEEEEEeCC
Q 035558          144 YMATIIMDS  152 (253)
Q Consensus       144 ~l~~~~~~~  152 (253)
                      ++++....+
T Consensus       530 Yvav~~G~g  538 (596)
T d1w6sa_         530 YVAIYYGVG  538 (596)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEecCC
Confidence            666555443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.65  E-value=3.2  Score=31.38  Aligned_cols=55  Identities=11%  Similarity=0.280  Sum_probs=38.3

Q ss_pred             ccEEEEEec-CCCeEEEEeCCCcEEEEEcCCCCCeeeeec-----cCCCCCCeeEEEeeCC
Q 035558           86 KEVYDIAWG-GVGVFASVSADGSVRVFDLRDKEHSTIIYE-----SSEPDTPLVRLGWNKQ  140 (253)
Q Consensus        86 ~~v~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~  140 (253)
                      ...++|+|. ++++|++--..|.|++++..++........     ....+.....|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            466799999 888887765689999998877654322221     1223457889999983

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.17  E-value=3.5  Score=27.83  Aligned_cols=154  Identities=7%  Similarity=-0.022  Sum_probs=82.8

Q ss_pred             ccEEEEEecCCCeEEEEeCCCcEEEEEcCCCCCeeeeeccCCCCCCeeEEEeeCCCCCEEEEEE-eCCCe--EEEEECCC
Q 035558           86 KEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATII-MDSAK--VVVLDIRF  162 (253)
Q Consensus        86 ~~v~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~~--i~~~d~~~  162 (253)
                      -.|.++++.+.+...+|+......+|-++.++..+....+ . -+-|+.+     .+++++-.+ ..++.  ..+-|+.+
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vP-p-FsFVtDI-----~~d~I~G~g~~~g~~~sfF~adl~S  176 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G-FGFVSDI-----RGDLIAGLGFFGGGRVSLFTSNLSS  176 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S-CEEEEEE-----ETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCC-C-cceEEec-----cCCeEEEEeeecCCcceEEEEeccc
Confidence            4567777767778888888888999999888643333221 1 1133333     344444322 12221  23334443


Q ss_pred             CCCCeeeecccccceeEEEEecCCCCeEEEec----CCCcEEEEeccCCCCCCCCCCCCeeeccCCCceeEEEEcCCCCc
Q 035558          163 PTLPVVELQRHQASVNAIAWAPHSSCHICTAG----DDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPD  238 (253)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  238 (253)
                      +.  +..+...++.++.....+.. + ++++-    +..-| -+|+++++-...+-+......-....|+-+-+.|+++.
T Consensus       177 G~--lri~tpkeGS~~~ay~~~gn-K-V~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L  251 (313)
T d2hu7a1         177 GG--LRVFDSGEGSFSSASISPGM-K-VTAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL  251 (313)
T ss_dssp             EE--EEEECCSSEEEEEEEECTTS-C-EEEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred             CC--EEEecCCCCcccceeEccCc-e-eeeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence            32  55555556777777777765 3 34332    22333 44777654221000000011112345666778999986


Q ss_pred             eEEEEcCCcEEEE
Q 035558          239 WVAIAFSTKLQIL  251 (253)
Q Consensus       239 ~~~~~~~~~i~vw  251 (253)
                      ++.+-.||.-++|
T Consensus       252 ~iiakrdG~s~lF  264 (313)
T d2hu7a1         252 AVVARREGRSAVF  264 (313)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEecCCchhee
Confidence            6777778877665

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.05  E-value=7.3  Score=28.94  Aligned_cols=116  Identities=10%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             CeeEEEecCCCCCEEEEE-eCCC----eEEEEeccCceeeeeeecccccEEEEEec-CCCeEEEEeCC------------
Q 035558           44 PLTSFDWNEAEPRRIGTS-SIDT----TCTIWDIEREAVDTQLIAHDKEVYDIAWG-GVGVFASVSAD------------  105 (253)
Q Consensus        44 ~v~~~~~~~~~~~~l~~~-~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------------  105 (253)
                      .+..++++ |++++++.+ +.+|    .|+++|+++++.+..... ......++|. +++.|+....+            
T Consensus       126 ~~~~~~~S-pd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         126 ALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             eecceEec-CCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            34566788 788877744 3344    799999999986542211 1122568899 77766654332            


Q ss_pred             ----CcEEEEEcCCCCCe-eeeeccCCCCCCeeEEEeeCCCCCEEEEEEeCC---C-eEEEEECCC
Q 035558          106 ----GSVRVFDLRDKEHS-TIIYESSEPDTPLVRLGWNKQDPRYMATIIMDS---A-KVVVLDIRF  162 (253)
Q Consensus       106 ----g~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~-~i~~~d~~~  162 (253)
                          ..|..+.+.+.... ..+.........+..+..++ ++++++.....+   . .+.+.|+..
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCC
Confidence                25788888776432 23333333333455666777 777766543322   1 245556554

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=82.77  E-value=7.3  Score=28.74  Aligned_cols=153  Identities=10%  Similarity=-0.040  Sum_probs=80.9

Q ss_pred             CCeeEEEecCCCCCEEEEEeCCCeEEEEeccCceeeeee-------ecccccEEEEEec--CCCeEEEEeCC----CcEE
Q 035558           43 GPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQL-------IAHDKEVYDIAWG--GVGVFASVSAD----GSVR  109 (253)
Q Consensus        43 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~--~~~~l~~~~~d----g~i~  109 (253)
                      +.|.+|+++|.+.+++.+++..|-|..-+ ..++.=..+       ......+.+|+++  +.+.+..+..+    ....
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCcc
Confidence            68999999988899998888766553322 222211111       1123467888888  55566555422    1123


Q ss_pred             EEEcC-CCCCeeeeeccC------CCCCCeeEEEeeCCCCCEEEEEEeCCCeEEEEECCCCCCCeeee------cccccc
Q 035558          110 VFDLR-DKEHSTIIYESS------EPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVEL------QRHQAS  176 (253)
Q Consensus       110 i~d~~-~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------~~~~~~  176 (253)
                      +|--. .++....+....      ........+.++|.+.+.+.+++.++. |.. ....+.. -..+      ......
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~g-l~~-S~D~G~t-W~~~~~~~~~~~~~~~  167 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG-IWK-SSDRAKT-WTNVTSIPDAFTNGIG  167 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSC-EEE-ESSTTSS-CEECTTSSCCCCSSSC
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccc-eee-ecCCCce-eeecccCcccccCCcc
Confidence            44333 233222222111      111245678999977888888877766 532 2222221 1111      112234


Q ss_pred             eeEEEEecCCCCeEEE-ecCCCcE
Q 035558          177 VNAIAWAPHSSCHICT-AGDDSQA  199 (253)
Q Consensus       177 i~~~~~~~~~~~~l~~-~~~dg~i  199 (253)
                      +..+.++|..+..++. +...+.|
T Consensus       168 ~~~i~~~p~~~~~~y~~~~~~~gi  191 (427)
T d2ebsa1         168 YTSVIFDPERNGTIYASATAPQGM  191 (427)
T ss_dssp             EEEEEECTTSTTCEEEEESSTTCE
T ss_pred             ceEEEecccccceeeeeeeecccc
Confidence            7789999876555543 3333344