Citrus Sinensis ID: 035573

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MYHQNNLAYDMFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQESSWFVNF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHccccccHHHHHHHHHHHHccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccHHHHHHHccccHEcccccccEEEEEEEccccEEEcc
Coil and Loop (DISEMBL)
myhqnnlaYDMFQVfqsgnsradEIVLSNMAVAFDRVLldieepftfssyhksmrepfdyymfgqnyirplvdfrLANDFYAILIHQesswfvnf
Flexible Loop (DISEMBL)
MYHQNNLAYDMFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQESSWFVNF
Low Complexity Region (SEG)
MYHQNNLAYDMFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQESSWFVNF
Disordered region (IsUnstruct)
******LAYDMFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQESSWFV**
Disordered Region (DISOPRED)
*****NLAYDMFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQESSWFVNF
Disordered Region (DISEMBL)
MYHQNNLAYDMFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQESSWFVNF
Disordered Region (DISPRO)
MYHQNNLAYDMFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQESSWFVNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYHQNNLAYDMFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQESSWFVNF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
P10349	396	Glycerol-3-phosphate acyl	N/A	no	0.642	0.154	0.754	4e-24
Q39639	470	Glycerol-3-phosphate acyl	N/A	no	0.642	0.129	0.737	1e-23
P30706	457	Glycerol-3-phosphate acyl	N/A	no	0.642	0.133	0.672	3e-21
Q43822	461	Glycerol-3-phosphate acyl	N/A	no	0.673	0.138	0.656	9e-21
Q43307	459	Glycerol-3-phosphate acyl	yes	no	0.652	0.135	0.677	1e-20
Q42713	463	Glycerol-3-phosphate acyl	N/A	no	0.652	0.133	0.677	2e-19
Q43869	472	Glycerol-3-phosphate acyl	N/A	no	0.642	0.129	0.704	9e-19

>sp|P10349|PLSB_CUCMO Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucurbita moschata PE=1 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+D
Sbjct: 77  VIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLID 136

Query: 74  F 74
           F
Sbjct: 137 F 137

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids. Squash is chilling-sensitive.
Cucurbita moschata (taxid: 3662)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q39639|PLSB_CUCSA Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucumis sativus PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 55/61 (90%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           VF+SGN +ADEIVLSNM VA DR+LLD+E+PF FS +HK++REPFDYY FGQNY+RPL+D
Sbjct: 150 VFESGNPKADEIVLSNMTVALDRILLDVEDPFMFSPHHKAIREPFDYYTFGQNYVRPLID 209

Query: 74  F 74
           F
Sbjct: 210 F 210

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids.

Cucumis sativus (taxid: 3659)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P30706|PLSB_PEA Glycerol-3-phosphate acyltransferase, chloroplastic OS=Pisum sativum GN=GPAT PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 51/61 (83%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V +SG+ +A+EIVLSNM    DR+ LD++EPF F ++HK+ REPFDYYMFGQNYIRPLVD
Sbjct: 137 VIKSGDPKANEIVLSNMTALLDRIFLDVKEPFVFEAHHKAKREPFDYYMFGQNYIRPLVD 196

Query: 74  F 74
           F
Sbjct: 197 F 197

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids. This is an oleate-selective acyltransferase.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q43822|PLSB_PHAVU Glycerol-3-phosphate acyltransferase, chloroplastic OS=Phaseolus vulgaris GN=PLSB PE=2 SV=1

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 51/64 (79%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V QSG+ +A+EIVLSNM    DRV LD+ +PF F  +HK+ REPFDYY+FGQNYIRPLVD
Sbjct: 141 VIQSGDPKANEIVLSNMIALLDRVFLDVTDPFVFQPHHKAKREPFDYYVFGQNYIRPLVD 200

Query: 74  FRLA 77
           F+ A
Sbjct: 201 FKNA 204

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids.

Phaseolus vulgaris (taxid: 3885)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q43307|PLSB_ARATH Glycerol-3-phosphate acyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ATS1 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 53/62 (85%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V  SG SRADE V+SNM+VAFDR+LL +E+P+TF+ YHK++REPFDYYMF   YIRPL+D
Sbjct: 139 VLSSGASRADETVVSNMSVAFDRMLLGVEDPYTFNPYHKAVREPFDYYMFVHTYIRPLID 198

Query: 74  FR 75
           F+
Sbjct: 199 FK 200

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids. This is an oleate-selective acyltransferase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q42713|PLSB_CARTI Glycerol-3-phosphate acyltransferase, chloroplastic OS=Carthamus tinctorius PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V QS    A++IVLSNM VAFDR+ LD++EPF FS YH+++ EPF+YYMFGQNYIRPLV+
Sbjct: 139 VLQSAAPHAEDIVLSNMRVAFDRMFLDVKEPFEFSPYHEAILEPFNYYMFGQNYIRPLVN 198

Query: 74  FR 75
           FR
Sbjct: 199 FR 200

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids.

Carthamus tinctorius (taxid: 4222)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q43869|PLSB_SPIOL Glycerol-3-phosphate acyltransferase, chloroplastic OS=Spinacia oleracea GN=GAT PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 49/61 (80%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V  SG S ADEIVLSNM+V  D VLLDIE+PF F  +HK++REP DYY FGQ+YIRPLVD
Sbjct: 151 VLSSGISHADEIVLSNMSVMLDFVLLDIEDPFVFPPFHKAIREPADYYSFGQDYIRPLVD 210

Query: 74  F 74
           F
Sbjct: 211 F 211


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.140    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,756,440
Number of Sequences: 539616
Number of extensions: 1224233
Number of successful extensions: 2602
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2593
Number of HSP's gapped (non-prelim): 10
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids. This is an oleate-selective acyltransferase.

Spinacia oleracea (taxid: 3562)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
77417717	277	glycerol-3-phosphate acyltransferase [Ci	0.652	0.223	1.0	1e-29
17974320	469	glycerol-3-phosphate acyltransferase [Ci	0.652	0.132	1.0	1e-29
344190174	369	GPAT [Corylus heterophylla]	0.652	0.168	0.822	7e-24
7576943	460	glycerol-3-phosphate acyltransferase [El	0.652	0.134	0.758	2e-23
225427100	458	PREDICTED: glycerol-3-phosphate acyltran	0.642	0.133	0.770	8e-23
410186486	410	GPAT [Lilium pensylvanicum]	0.652	0.151	0.758	1e-22
410186480	403	GPAT [Lilium longiflorum]	0.652	0.153	0.758	1e-22
410186484	403	GPAT [Lilium regale]	0.652	0.153	0.758	1e-22
16974972	368	Chain A, Crystal Structure Analysis Of S	0.642	0.165	0.754	2e-22
11137999	462	glycerol-3-phosphate acyltransferase [Cu	0.642	0.132	0.754	2e-22

>gi|77417717|gb|ABA82134.1| glycerol-3-phosphate acyltransferase [Citrus maxima]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD
Sbjct: 148 VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 207

Query: 74  FR 75
           FR
Sbjct: 208 FR 209

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17974320|dbj|BAB79529.1| glycerol-3-phosphate acyltransferase [Citrus unshiu]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD
Sbjct: 148 VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 207

Query: 74  FR 75
           FR
Sbjct: 208 FR 209

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344190174|gb|AEM97869.1| GPAT [Corylus heterophylla]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 56/62 (90%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           VFQSGN RADEIVLSNMAV FDRV  D+E+PF FS YHK++REPFDYYMFGQ+YIRPLVD
Sbjct: 131 VFQSGNPRADEIVLSNMAVVFDRVFFDVEDPFVFSPYHKALREPFDYYMFGQSYIRPLVD 190

Query: 74  FR 75
           FR
Sbjct: 191 FR 192

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7576943|gb|AAF64066.1|AF251795_1 glycerol-3-phosphate acyltransferase [Elaeis guineensis]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 59/62 (95%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V QSG+ RA++I+LSNMAVAFDR+LLD+E+PFTFS +H+++REPFDYYMFGQNYIRPL+D
Sbjct: 140 VLQSGDPRANKIILSNMAVAFDRILLDVEDPFTFSPHHQAIREPFDYYMFGQNYIRPLID 199

Query: 74  FR 75
           FR
Sbjct: 200 FR 201

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427100|ref|XP_002276101.1| PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Vitis vinifera] gi|297742036|emb|CBI33823.3| unnamed protein product [Vitis vinifera]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           VFQSGN RADEI+LSNM VA DR+ LD+E+PF F  +HK++REPFDYYMFGQNYIRPLVD
Sbjct: 138 VFQSGNPRADEIILSNMTVALDRIFLDVEDPFVFEPHHKALREPFDYYMFGQNYIRPLVD 197

Query: 74  F 74
           F
Sbjct: 198 F 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410186486|gb|AFV66471.1| GPAT [Lilium pensylvanicum]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V QSGN  A +I+LSNMAV FDR+LLD+E+PFTFS +HK++REPFDYYMFGQNYI+PLVD
Sbjct: 92  VLQSGNPNASKIILSNMAVVFDRILLDVEDPFTFSPHHKAIREPFDYYMFGQNYIKPLVD 151

Query: 74  FR 75
           FR
Sbjct: 152 FR 153

Source: Lilium pensylvanicum

Species: Lilium pensylvanicum

Genus: Lilium

Family: Liliaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410186480|gb|AFV66468.1| GPAT [Lilium longiflorum]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V QSGN  A +I+LSNMAV FDR+LLD+E+PFTFS +HK++REPFDYYMFGQNYI+PLVD
Sbjct: 85  VLQSGNPNASKIILSNMAVVFDRILLDVEDPFTFSPHHKAIREPFDYYMFGQNYIKPLVD 144

Query: 74  FR 75
           FR
Sbjct: 145 FR 146

Source: Lilium longiflorum

Species: Lilium longiflorum

Genus: Lilium

Family: Liliaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410186484|gb|AFV66470.1| GPAT [Lilium regale]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V QSGN  A +I+LSNMAV FDR+LLD+E+PFTFS +HK++REPFDYYMFGQNYI+PLVD
Sbjct: 85  VLQSGNPNASKIILSNMAVVFDRILLDVEDPFTFSPHHKAIREPFDYYMFGQNYIKPLVD 144

Query: 74  FR 75
           FR
Sbjct: 145 FR 146

Source: Lilium regale

Species: Lilium regale

Genus: Lilium

Family: Liliaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16974972|pdb|1K30|A Chain A, Crystal Structure Analysis Of Squash (Cucurbita Moschata) Glycerol-3-Phosphate (1)-Acyltransferase

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+D
Sbjct: 49  VIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLID 108

Query: 74  F 74
           F
Sbjct: 109 F 109

Source: Cucurbita moschata

Species: Cucurbita moschata

Genus: Cucurbita

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11137999|dbj|BAB17755.1| glycerol-3-phosphate acyltransferase [Cucurbita moschata] gi|13429838|dbj|BAB39689.1| acyl-(acyl-carrier-protein): glycerol-3-phosphate acyltransferase [Cucurbita moschata]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+D
Sbjct: 143 VIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLID 202

Query: 74  F 74
           F
Sbjct: 203 F 203

Source: Cucurbita moschata

Species: Cucurbita moschata

Genus: Cucurbita

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2031755	459	ATS1 [Arabidopsis thaliana (ta	0.652	0.135	0.677	2.3e-19
UNIPROTKB|Q9TJS6	105	gpat "Glycerol-3-phosphate acy	0.210	0.190	0.95	1.3e-06
UNIPROTKB|Q9TJS7	105	gpat "Glycerol-3-phosphate acy	0.210	0.190	0.95	1.3e-06
UNIPROTKB|Q9XQR1	105	GPAT "Glycerol-3-phosphate acy	0.210	0.190	0.95	1.3e-06

TAIR|locus:2031755 ATS1 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 42/62 (67%), Positives = 53/62 (85%)

Query:    14 VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
             V  SG SRADE V+SNM+VAFDR+LL +E+P+TF+ YHK++REPFDYYMF   YIRPL+D
Sbjct:   139 VLSSGASRADETVVSNMSVAFDRMLLGVEDPYTFNPYHKAVREPFDYYMFVHTYIRPLID 198

Query:    74 FR 75
             F+
Sbjct:   199 FK 200

GO:0004366 "glycerol-3-phosphate O-acyltransferase activity" evidence=IEA;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA;IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0009536 "plastid" evidence=NAS

UNIPROTKB|Q9TJS6 gpat "Glycerol-3-phosphate acyltransferase" [Oryza sativa (taxid:4530)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query:    56 EPFDYYMFGQNYIRPLVDFR 75
             EPFDYYMFGQNYIRPLVD+R
Sbjct:     1 EPFDYYMFGQNYIRPLVDYR 20

GO:0009536 "plastid" evidence=IC;ISS

UNIPROTKB|Q9TJS7 gpat "Glycerol-3-phosphate acyltransferase" [Oryza sativa (taxid:4530)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query:    56 EPFDYYMFGQNYIRPLVDFR 75
             EPFDYYMFGQNYIRPLVD+R
Sbjct:     1 EPFDYYMFGQNYIRPLVDYR 20

GO:0009536 "plastid" evidence=IC;ISS

UNIPROTKB|Q9XQR1 GPAT "Glycerol-3-phosphate acyltransferase" [Oryza sativa (taxid:4530)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 19/20 (95%), Positives = 20/20 (100%)

Query:    56 EPFDYYMFGQNYIRPLVDFR 75
             EPFDYYMFGQNYIRPLVD+R
Sbjct:     1 EPFDYYMFGQNYIRPLVDYR 20


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.140   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        95   0.00091  102 3  11 22  0.41    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  552 (59 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.89u 0.15s 10.04t   Elapsed:  00:00:00
  Total cpu time:  9.89u 0.15s 10.04t   Elapsed:  00:00:00
  Start:  Thu May  9 22:24:33 2013   End:  Thu May  9 22:24:33 2013

GO:0009536 "plastid" evidence=IC;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
PLN02349	426	PLN02349, PLN02349, glycerol-3-phosphate acyltrans	2e-34

>gnl|CDD|215199 PLN02349, PLN02349, glycerol-3-phosphate acyltransferase

 Score =  121 bits (305), Expect = 2e-34
 Identities = 45/63 (71%), Positives = 51/63 (80%)

Query: 13  QVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLV 72
            V  SG   ADEIV+SNMA   DRVLL +E+PFTF  YHK++REPFDYYMFGQNYIRPL+
Sbjct: 118 AVLSSGAPNADEIVVSNMASILDRVLLGVEDPFTFPPYHKALREPFDYYMFGQNYIRPLI 177

Query: 73  DFR 75
           DFR
Sbjct: 178 DFR 180

Length = 426

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
PLN02349	426	glycerol-3-phosphate acyltransferase	99.97
PF14829	77	GPAT_N: Glycerol-3-phosphate acyltransferase N-ter	99.5

>PLN02349 glycerol-3-phosphate acyltransferase

Probab=99.97  E-value=2.3e-32  Score=226.37  Aligned_cols=77  Identities=58%  Similarity=0.946  Sum_probs=73.0

Q ss_pred             hhhhhhcCCcchhHHHHHhHHHHHHHHHhccCCCcccCcccccccCCchhhHhhhhhhhhccccCcchheeeeeeec
Q 035573           11 MFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYAILIHQ   87 (95)
Q Consensus        11 ~~AV~~Sg~p~A~e~vl~nM~~~lDrvlldvedPF~F~pyHkaiRePfDYY~FGq~YIrpLVDf~nS~~~y~~~~~~   87 (95)
                      -+||++||+|+|+|++++||+.+||||++|+++||+||||||+||||||||+|||+||||||||+||+|.+.-++.+
T Consensus       116 ~~Av~~sg~~~a~e~~~~~m~~~~d~v~~~~~~Pf~F~~~Hkair~pfDyY~fg~~yirpLiDf~~S~v~~~~~~~~  192 (426)
T PLN02349        116 KNAVLSSGAPNADEIVVSNMASILDRVLLGVEDPFTFPPYHKALREPFDYYMFGQNYIRPLIDFRNSYLGNRSRFDK  192 (426)
T ss_pred             HHHHHhcCCCCchHHHHHHHHHHHHHHHHhccCCccCChHHHhhcCcccHHHHHHHHHHHHhhcccceecCHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999988655544

>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A

Probab=99.50  E-value=1e-14  Score=98.95  Aligned_cols=34  Identities=74%  Similarity=1.064  Sum_probs=30.8

Q ss_pred             hhhhhcCCcchhHHHHHhHHHHHHHHHhccCCCc
Q 035573           12 FQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPF   45 (95)
Q Consensus        12 ~AV~~Sg~p~A~e~vl~nM~~~lDrvlldvedPF   45 (95)
                      |||+|||+|+|+|+||+||+++||||++|+|+||
T Consensus        44 ~AVl~Sg~p~A~eivlsnm~~~~Drvlldve~PF   77 (77)
T PF14829_consen   44 NAVLQSGDPNADEIVLSNMAVALDRVLLDVEDPF   77 (77)
T ss_dssp             HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHhCCCCCccHHHHHHHHHHHHHHHHcccCCC
Confidence            8999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
1k30_A	368	Crystal Structure Analysis Of Squash (Cucurbita Mos		3e-25
1iuq_A	367	The 1.55 A Crystal Structure Of Glycerol-3-phosphat		5e-25

>pdb|1K30|A Chain A, Crystal Structure Analysis Of Squash (Cucurbita Moschata) Glycerol-3-Phosphate (1)-Acyltransferase Length = 368

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 56/61 (91%)
Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+D
Sbjct: 49  VIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLID 108
Query: 74  F 74
           F
Sbjct: 109 F 109

>pdb|1IUQ|A Chain A, The 1.55 A Crystal Structure Of Glycerol-3-phosphate Acyltransferase Length = 367

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/61 (73%), Positives = 55/61 (90%)
Query: 14  VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
           V +SGN +ADEIVLSN  VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+D
Sbjct: 48  VIESGNPKADEIVLSNXTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLID 107
Query: 74  F 74
           F
Sbjct: 108 F 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
1iuq_A	367	Glycerol-3-phosphate acyltransferase; open twisted	9e-22

>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A Length = 367

 Score = 86.0 bits (212), Expect = 9e-22
 Identities = 46/63 (73%), Positives = 56/63 (88%)

Query: 13  QVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLV 72
            V +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+
Sbjct: 47  AVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLI 106

Query: 73  DFR 75
           DF 
Sbjct: 107 DFG 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
1iuq_A	367	Glycerol-3-phosphate acyltransferase; open twisted	99.93

>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A

Probab=99.93  E-value=5.1e-27  Score=189.53  Aligned_cols=71  Identities=65%  Similarity=1.041  Sum_probs=68.5

Q ss_pred             hhhhhhcCCcchhHHHHHhHHHHHHHHHhccCCCcccCcccccccCCchhhHhhhhhhhhccccCcchhee
Q 035573           11 MFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFY   81 (95)
Q Consensus        11 ~~AV~~Sg~p~A~e~vl~nM~~~lDrvlldvedPF~F~pyHkaiRePfDYY~FGq~YIrpLVDf~nS~~~y   81 (95)
                      -+||++||+|+|+|+|+++|.+++|||++|+++||+|+|||||||+|||||+||++|+|||+|+.+|+|.-
T Consensus        45 ~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~f~~~h~~~~~p~d~y~~~~~~ir~li~~~~s~V~G  115 (367)
T 1iuq_A           45 RNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGN  115 (367)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHSCCCCCSEECCCCSSSCHHHHHHHHHGGGBCGGGCEEEC
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHhhcccCCccCCchhhhhcCchhHHHHHHHHHHHHHhhcCCEeec
Confidence            37999999999999999999999999999999999999999999999999999999999999999999644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1iuqa_	367	c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransf	2e-29

>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]} Length = 367

class: Alpha and beta proteins (a/b)
fold: Glycerol-3-phosphate (1)-acyltransferase
superfamily: Glycerol-3-phosphate (1)-acyltransferase
family: Glycerol-3-phosphate (1)-acyltransferase
domain: Glycerol-3-phosphate (1)-acyltransferase
species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]

 Score =  105 bits (263), Expect = 2e-29
 Identities = 46/63 (73%), Positives = 56/63 (88%)

Query: 13  QVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLV 72
            V +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+
Sbjct: 47  AVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLI 106

Query: 73  DFR 75
           DF 
Sbjct: 107 DFG 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1iuqa_	367	Glycerol-3-phosphate (1)-acyltransferase {Cushaw s	99.96

>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}

class: Alpha and beta proteins (a/b)
fold: Glycerol-3-phosphate (1)-acyltransferase
superfamily: Glycerol-3-phosphate (1)-acyltransferase
family: Glycerol-3-phosphate (1)-acyltransferase
domain: Glycerol-3-phosphate (1)-acyltransferase
species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]

Probab=99.96  E-value=3.2e-30  Score=204.39  Aligned_cols=72  Identities=64%  Similarity=1.021  Sum_probs=69.9

Q ss_pred             hhhhhhcCCcchhHHHHHhHHHHHHHHHhccCCCcccCcccccccCCchhhHhhhhhhhhccccCcchheee
Q 035573           11 MFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFYA   82 (95)
Q Consensus        11 ~~AV~~Sg~p~A~e~vl~nM~~~lDrvlldvedPF~F~pyHkaiRePfDYY~FGq~YIrpLVDf~nS~~~y~   82 (95)
                      -+||++||+|+|+|++++||++++|||++|+++||+|+|||+++|||||||+|||+||||||||+||++..-
T Consensus        45 ~~a~~~s~~~~a~e~~~~~~~~~~~~~~~~~~~p~~f~~~h~~~~~~~~~~~~~~~~~~~li~~~~s~v~~~  116 (367)
T d1iuqa_          45 RNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNL  116 (367)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHSCCCCCSEECCCCSSSCHHHHHHHHHGGGBCGGGCEEECH
T ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHHhccCCCcccCccchhccCCCCHHHHHHHHHHHHhcCCCCEEecH
Confidence            489999999999999999999999999999999999999999999999999999999999999999999763