Citrus Sinensis ID: 035593
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | 2.2.26 [Sep-21-2011] | |||||||
| Q8G4L4 | 446 | Probable spermidine synth | yes | no | 0.594 | 0.358 | 0.252 | 4e-07 | |
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.204 | 0.078 | 0.35 | 0.0005 | |
| Q7NQK7 | 261 | Spermidine synthase OS=Ch | yes | no | 0.382 | 0.394 | 0.302 | 0.0006 |
| >sp|Q8G4L4|SPEE_BIFLO Probable spermidine synthase OS=Bifidobacterium longum (strain NCC 2705) GN=speE PE=3 SV=1 | Back alignment and function desciption |
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Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 19 SRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPILPP 78
S YNY++V +S D +L + S++ + LT Y+D P +
Sbjct: 144 SIYNYLQVKNLS---DRTILSTNVLF-----GVQSVTMKDKGLTGMYYDTALAAPALADN 195
Query: 79 GPIG-ILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY 137
ILG G G+ AR + YP+ I G E+D + +A E+F ++ + Y
Sbjct: 196 ANSALILGMGTGTYARQLKQYYPKMNITGVEIDQKITDLAGEYF-----DEPADIPVTTY 250
Query: 138 VGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191
G A A+ D + I+VD + ++ ++ + +R+ L GG ++VN+
Sbjct: 251 DGRAWLAASHDKYDVIMVDAYQDITIPFQMSSTEFFTMVREHLNPGGVMVVNMN 304
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Bifidobacterium longum (strain NCC 2705) (taxid: 206672) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 6 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function description |
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Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 83 ILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142
++G G GS I D +P++ IH E+DPS+++VA ++F S DR+ V++ + L
Sbjct: 500 VVGLGGGSLPLFIHDHFPKSCIHAVEIDPSMLEVATQWFGF-----SQSDRMKVHIADGL 554
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Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q7NQK7|SPEE_CHRVO Spermidine synthase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=speE PE=3 SV=1 | Back alignment and function description |
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Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-------EKLEKSY 130
P I +G G GS AR I + P+AV +++P VI VAR FF L E +E
Sbjct: 66 PKHILQIGLGGGSFARFIDEYLPDAVSVAVDINPQVIAVARAFFQLPEEGDFFEIVEADG 125
Query: 131 PDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189
D + ++ G+ A L DGF G+ ++ L + +E ++ L G + N
Sbjct: 126 ADYVKIFRGST-DAILVDGFDGL--------QIVDALTTEDFFEDCKRALSPKGVFVTN 175
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | ||||||
| 225456924 | 334 | PREDICTED: probable spermidine synthase- | 0.996 | 0.802 | 0.776 | 1e-123 | |
| 449469719 | 331 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.812 | 0.758 | 1e-121 | |
| 449530584 | 323 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.973 | 0.811 | 0.763 | 1e-118 | |
| 224135909 | 269 | predicted protein [Populus trichocarpa] | 0.988 | 0.988 | 0.800 | 1e-116 | |
| 356562694 | 317 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.845 | 0.716 | 1e-112 | |
| 255540547 | 328 | S-adenosylmethionine-dependent methyltra | 0.988 | 0.810 | 0.691 | 1e-107 | |
| 297797299 | 329 | hypothetical protein ARALYDRAFT_496492 [ | 0.981 | 0.802 | 0.726 | 2e-98 | |
| 15242625 | 329 | S-adenosyl-L-methionine-dependent methyl | 0.981 | 0.802 | 0.704 | 8e-96 | |
| 297733724 | 300 | unnamed protein product [Vitis vinifera] | 0.661 | 0.593 | 0.752 | 1e-76 | |
| 449487841 | 175 | PREDICTED: uncharacterized LOC101205232, | 0.646 | 0.994 | 0.724 | 1e-70 |
| >gi|225456924|ref|XP_002278083.1| PREDICTED: probable spermidine synthase-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 242/268 (90%)
Query: 1 TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS 60
TQDDG+P D VKI+ KF+SR+NYIRVL+VSRK DHPFAG+RLLLLDGPGNIHSIS+L +S
Sbjct: 66 TQDDGIPVDLVKILVKFKSRHNYIRVLDVSRKADHPFAGSRLLLLDGPGNIHSISFLLKS 125
Query: 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF 120
T+TYFD ATLP ILPPGP+GILGFGAGSAARLIL+ YP+ V+HGWELDPSVI+V RE+
Sbjct: 126 FTDTYFDVLATLPAILPPGPLGILGFGAGSAARLILETYPQVVVHGWELDPSVIEVGREY 185
Query: 121 FALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL 180
F L KLEK +P RLF+Y+GNAL AS+++GFSGILVDLF KGSL+ EL+DP TWEKLR+ L
Sbjct: 186 FGLSKLEKEHPHRLFIYIGNALNASVRNGFSGILVDLFCKGSLIPELQDPGTWEKLRKRL 245
Query: 181 RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALT 240
RKGGRIMVNVGGSCVEAEDSRRDGKVVME +LKAMHKVFG +++VL+LGNRK+DS IALT
Sbjct: 246 RKGGRIMVNVGGSCVEAEDSRRDGKVVMEESLKAMHKVFGDQVFVLNLGNRKEDSSIALT 305
Query: 241 GELPDLDDWKRALPRSLKFYVDMWVPYS 268
GELPDLD+WK+ALPRSL++YVDMW P S
Sbjct: 306 GELPDLDEWKKALPRSLRYYVDMWTPVS 333
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469719|ref|XP_004152566.1| PREDICTED: uncharacterized protein LOC101205232 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/269 (75%), Positives = 237/269 (88%)
Query: 1 TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS 60
TQDDG+P+DDVKI+AKF+SR+N+IRVLEVSR+ +HP AG+RLLLLD PGNIHSIS+LF+S
Sbjct: 62 TQDDGIPSDDVKILAKFKSRHNFIRVLEVSRRAEHPLAGSRLLLLDAPGNIHSISFLFKS 121
Query: 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF 120
LTNTYFD FATLPPILP GPIGILGFGAGSAAR IL LYPE V+HGWELDPSV+ V REF
Sbjct: 122 LTNTYFDVFATLPPILPSGPIGILGFGAGSAARSILKLYPEVVVHGWELDPSVVAVGREF 181
Query: 121 FALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL 180
F + KLEK YPDRLF+Y+GNAL A++ GF+GILVDLFS+GSL+ ELEDPNTW L +CL
Sbjct: 182 FGVSKLEKKYPDRLFIYIGNALNANVTGGFAGILVDLFSEGSLIPELEDPNTWRMLERCL 241
Query: 181 RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALT 240
KGGR+MVNVGGSCVEAED RRDGKVVME TLKAMH+V+GKKL+VL LGN +DDS +ALT
Sbjct: 242 MKGGRVMVNVGGSCVEAEDIRRDGKVVMEQTLKAMHQVYGKKLWVLRLGNGEDDSSLALT 301
Query: 241 GELPDLDDWKRALPRSLKFYVDMWVPYSG 269
G+LPD+ WK+ LPRSL+FY DMW Y+G
Sbjct: 302 GDLPDIVAWKKLLPRSLRFYADMWTLYNG 330
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530584|ref|XP_004172274.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101205232, partial [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/262 (76%), Positives = 232/262 (88%)
Query: 1 TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS 60
TQDDG+P+DDVKI+AKF+SR+N+IRVLEVSR+ +HP AG+RLLLLD PGNIHSIS+LF+S
Sbjct: 62 TQDDGIPSDDVKILAKFKSRHNFIRVLEVSRRAEHPLAGSRLLLLDAPGNIHSISFLFKS 121
Query: 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF 120
LTNTYFD FATLPPILP GPIGILGFGAGSAAR IL LYPE V+HGWELDPSV+ V REF
Sbjct: 122 LTNTYFDVFATLPPILPSGPIGILGFGAGSAARSILKLYPEVVVHGWELDPSVVAVGREF 181
Query: 121 FALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL 180
F + KLEK YPDRLF+Y+GNAL A++ GF+GILVDLFS+GSL+ ELEDPNTW L +CL
Sbjct: 182 FGVSKLEKXYPDRLFIYIGNALNANVTGGFAGILVDLFSEGSLIPELEDPNTWRMLERCL 241
Query: 181 RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALT 240
KGGR+MVNVGGSCVEAED RRDGKVVME TLKAMH+V+GKKL+VL LGN +DDS +ALT
Sbjct: 242 MKGGRVMVNVGGSCVEAEDIRRDGKVVMEQTLKAMHQVYGKKLWVLRLGNGEDDSSLALT 301
Query: 241 GELPDLDDWKRALPRSLKFYVD 262
G+LPD+ WK+ LPRSL+FY D
Sbjct: 302 GDLPDIVAWKKLLPRSLRFYAD 323
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135909|ref|XP_002322191.1| predicted protein [Populus trichocarpa] gi|222869187|gb|EEF06318.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/266 (80%), Positives = 239/266 (89%)
Query: 1 TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS 60
TQ+DG+P +DVKIIAKF+SR+NYIRVLE+SRK DHPFAG+RLLLLD PGNIHSIS+LF+S
Sbjct: 4 TQEDGIPIEDVKIIAKFKSRHNYIRVLEISRKADHPFAGSRLLLLDAPGNIHSISFLFKS 63
Query: 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF 120
LTNTYFD FA LPPI+PPGPI ILGFGAGSAARL+L+LYP V+HGWELD SVI V REF
Sbjct: 64 LTNTYFDVFAALPPIIPPGPIAILGFGAGSAARLLLELYPGVVVHGWELDSSVIDVGREF 123
Query: 121 FALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL 180
F L+KLEK YPDRLF+YVGNAL A +KDGFSGILVDLF KGSL+ EL+DPNTWEKLR+ L
Sbjct: 124 FGLKKLEKQYPDRLFIYVGNALSAKVKDGFSGILVDLFCKGSLIPELQDPNTWEKLRKSL 183
Query: 181 RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALT 240
RKGGRIMVNVGGSCVEAED RRDGKVVME TLKAMH+VFG +L+VL+LGNRKDDS +ALT
Sbjct: 184 RKGGRIMVNVGGSCVEAEDKRRDGKVVMEDTLKAMHQVFGDRLFVLNLGNRKDDSSLALT 243
Query: 241 GELPDLDDWKRALPRSLKFYVDMWVP 266
G+LPDLD WK+ LPRSL YVDMW P
Sbjct: 244 GKLPDLDAWKKVLPRSLSCYVDMWRP 269
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562694|ref|XP_003549604.1| PREDICTED: uncharacterized protein LOC100819757 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/268 (71%), Positives = 231/268 (86%)
Query: 1 TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS 60
TQ+DG+PAD+VKI+AKF+SR+NYIRVLEVSRK +HPF G+RLLLLD PGNIHSIS+LF+S
Sbjct: 49 TQEDGIPADEVKILAKFKSRHNYIRVLEVSRKAEHPFRGSRLLLLDTPGNIHSISFLFKS 108
Query: 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF 120
LTNTYFD FATLPPI+PPGP+ +LGFGAG+AARL+L +P A++H WELDP+VI+VARE+
Sbjct: 109 LTNTYFDVFATLPPIVPPGPLALLGFGAGTAARLLLLHHPSALLHCWELDPAVIQVAREY 168
Query: 121 FALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL 180
F L +LE+ DRLF+YVG+AL A++ +GFSGI+VDLFSKGSL+ EL+DP TW LR L
Sbjct: 169 FNLARLERDNQDRLFIYVGDALNATVPNGFSGIVVDLFSKGSLIPELQDPATWRMLRGRL 228
Query: 181 RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALT 240
RKGGRIMVNVGGSCVEAE+ RDGKVVME TL AM +VFGKK++VLSLGNRKDDS +ALT
Sbjct: 229 RKGGRIMVNVGGSCVEAENRLRDGKVVMEETLGAMKEVFGKKVFVLSLGNRKDDSSLALT 288
Query: 241 GELPDLDDWKRALPRSLKFYVDMWVPYS 268
G+LP L++WK LP K Y DMW PYS
Sbjct: 289 GDLPHLEEWKNRLPGPFKCYADMWTPYS 316
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540547|ref|XP_002511338.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223550453|gb|EEF51940.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/269 (69%), Positives = 227/269 (84%), Gaps = 3/269 (1%)
Query: 1 TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS 60
TQDDG+ +DVK+IAKF+SR+NYIRVLE+SRK DHP AG+RLLLLD PGNIHSIS+ ++
Sbjct: 59 TQDDGIAVEDVKMIAKFKSRHNYIRVLEISRKADHPLAGSRLLLLDSPGNIHSISFRYKL 118
Query: 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF 120
LTNTY+D FATLPP+LP GPI ILGFGAGSAAR+IL+LYPE IHGWELDPSVI V R++
Sbjct: 119 LTNTYYDVFATLPPLLPSGPIAILGFGAGSAARIILELYPEVTIHGWELDPSVISVGRKY 178
Query: 121 FALEKLEKSYPDRLFVYVGN--ALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178
F L+KLE + DRLF+Y+ N ALK++LK+ FSGI+VDLFSKGS++ EL+DPNTW +L +
Sbjct: 179 FGLDKLENDHSDRLFIYIDNALALKSNLKEKFSGIVVDLFSKGSVIPELQDPNTWVELSK 238
Query: 179 CLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIA 238
CL K GR+MVNVGG CVEAED RRDG +VME TLKAM+ VF L+VLSLGNR+DDS +A
Sbjct: 239 CLNKDGRLMVNVGGRCVEAEDKRRDGDIVMEDTLKAMYNVFD-DLFVLSLGNRQDDSTVA 297
Query: 239 LTGELPDLDDWKRALPRSLKFYVDMWVPY 267
LTG+LP LD WK+ LP+SL+ YV +W P+
Sbjct: 298 LTGKLPHLDSWKQLLPKSLRSYVHLWKPF 326
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797299|ref|XP_002866534.1| hypothetical protein ARALYDRAFT_496492 [Arabidopsis lyrata subsp. lyrata] gi|297312369|gb|EFH42793.1| hypothetical protein ARALYDRAFT_496492 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/267 (72%), Positives = 229/267 (85%), Gaps = 3/267 (1%)
Query: 3 DDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLT 62
DDG+PADDVK IAKF+SR+NYIRV+EVSRK +HP AG+RLLLLD PGNIHSIS+L ++LT
Sbjct: 57 DDGIPADDVKTIAKFKSRHNYIRVIEVSRKTNHPLAGSRLLLLDNPGNIHSISFLLKTLT 116
Query: 63 NTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFF 121
++YFD FATLPPI+PPGPIGILGFGAGS ARLIL+LYP E IHGWELDPSVI V REFF
Sbjct: 117 DSYFDVFATLPPIIPPGPIGILGFGAGSTARLILELYPPEIAIHGWELDPSVIDVGREFF 176
Query: 122 ALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLR 181
L KLE+ + DR+F+ +G+ALKAS+K GFSGILVDLFSKGS++ EL+DP WE L+ LR
Sbjct: 177 GLSKLERDHKDRIFINIGDALKASVKTGFSGILVDLFSKGSVIKELQDPQVWEDLKCRLR 236
Query: 182 KGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTG 241
GRIMVNVGG CVEAEDS RDG +VME TLKAM++VFG KL+VL+LGN +DS +ALTG
Sbjct: 237 NRGRIMVNVGGKCVEAEDSERDGGLVMEETLKAMNQVFGDKLFVLTLGN-GNDSSVALTG 295
Query: 242 ELPDLDDWKRALPRS-LKFYVDMWVPY 267
+LPDLD WK+ LPRS L+ YVDMW+PY
Sbjct: 296 DLPDLDAWKKRLPRSGLRSYVDMWIPY 322
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242625|ref|NP_201115.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|10177291|dbj|BAB10552.1| unnamed protein product [Arabidopsis thaliana] gi|332010321|gb|AED97704.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 188/267 (70%), Positives = 226/267 (84%), Gaps = 3/267 (1%)
Query: 3 DDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLT 62
D+G+PA+DVK IAKF+SR+NYIRV+EVSRK +HP AG+RLLLLD PGNIHSIS+L ++LT
Sbjct: 57 DNGIPAEDVKTIAKFKSRHNYIRVIEVSRKTNHPLAGSRLLLLDNPGNIHSISFLLKTLT 116
Query: 63 NTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFF 121
++YFD FATLPPI+PPGPIGILGFGAGS ARLIL+LYP E +HGWELDPSVI V REFF
Sbjct: 117 DSYFDVFATLPPIIPPGPIGILGFGAGSTARLILELYPPEIAVHGWELDPSVIDVGREFF 176
Query: 122 ALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLR 181
L KLE+ + DR+F+ +G+AL AS+K GFSGILVDLFSKGS++ EL+DP WE L+ LR
Sbjct: 177 GLSKLERDHKDRIFINIGDALNASVKTGFSGILVDLFSKGSVIKELQDPQVWEDLKSRLR 236
Query: 182 KGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTG 241
GRIMVNVGG CVEAEDS RDG +VME TL+ M +VFG KL+VL+LGN +DS +ALTG
Sbjct: 237 YRGRIMVNVGGKCVEAEDSDRDGALVMEETLRVMSQVFGDKLFVLTLGN-GNDSSVALTG 295
Query: 242 ELPDLDDWKRALPRS-LKFYVDMWVPY 267
+LPDLD WK+ LPRS L+ YVDMW+PY
Sbjct: 296 DLPDLDAWKKRLPRSELRSYVDMWIPY 322
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297733724|emb|CBI14971.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/178 (75%), Positives = 158/178 (88%)
Query: 1 TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS 60
TQDDG+P D VKI+ KF+SR+NYIRVL+VSRK DHPFAG+RLLLLDGPGNIHSIS+L +S
Sbjct: 66 TQDDGIPVDLVKILVKFKSRHNYIRVLDVSRKADHPFAGSRLLLLDGPGNIHSISFLLKS 125
Query: 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF 120
T+TYFD ATLP ILPPGP+GILGFGAGSAARLIL+ YP+ V+HGWELDPSVI+V RE+
Sbjct: 126 FTDTYFDVLATLPAILPPGPLGILGFGAGSAARLILETYPQVVVHGWELDPSVIEVGREY 185
Query: 121 FALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178
F L KLEK +P RLF+Y+GNAL AS+++GFSGILVDLF KGSL+ EL+DP TWEKLR+
Sbjct: 186 FGLSKLEKEHPHRLFIYIGNALNASVRNGFSGILVDLFCKGSLIPELQDPGTWEKLRK 243
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487841|ref|XP_004157827.1| PREDICTED: uncharacterized LOC101205232, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/174 (72%), Positives = 148/174 (85%)
Query: 96 LDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155
L LYPE V+HGWELDPSV+ V REFF + KLEK YPDRLF+Y+GNAL A++ GF+GILV
Sbjct: 1 LKLYPEVVVHGWELDPSVVAVGREFFGVSKLEKKYPDRLFIYIGNALNANVTGGFAGILV 60
Query: 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAM 215
DLFS+GSL+ ELEDPNTW L +CL KGGR+MVNVGGSCVEAED RRDGKVVME TLKAM
Sbjct: 61 DLFSEGSLIPELEDPNTWRMLERCLMKGGRVMVNVGGSCVEAEDIRRDGKVVMEQTLKAM 120
Query: 216 HKVFGKKLYVLSLGNRKDDSLIALTGELPDLDDWKRALPRSLKFYVDMWVPYSG 269
H+V+GKKL+VL LGN +DDS +ALTG+LPD+ WK+ LPRSL+FY DMW Y+G
Sbjct: 121 HQVYGKKLWVLRLGNGEDDSSLALTGDLPDIVAWKKLLPRSLRFYADMWTLYNG 174
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | ||||||
| TAIR|locus:2161997 | 329 | AT5G63100 "AT5G63100" [Arabido | 0.981 | 0.802 | 0.655 | 4.5e-91 | |
| TAIR|locus:2152140 | 333 | AT5G44600 "AT5G44600" [Arabido | 0.907 | 0.732 | 0.328 | 1e-29 | |
| TAIR|locus:2152135 | 349 | AT5G44590 "AT5G44590" [Arabido | 0.661 | 0.510 | 0.342 | 3.2e-28 |
| TAIR|locus:2161997 AT5G63100 "AT5G63100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 175/267 (65%), Positives = 211/267 (79%)
Query: 3 DDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLT 62
D+G+PA+DVK IAKF+SR+NYIRV+EVSRK +HP AG+RLLLLD PGNIHSIS+L ++LT
Sbjct: 57 DNGIPAEDVKTIAKFKSRHNYIRVIEVSRKTNHPLAGSRLLLLDNPGNIHSISFLLKTLT 116
Query: 63 NTYFDAFATXXXXXXXXXXXXXXFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFF 121
++YFD FAT FGAGS ARLIL+LYP E +HGWELDPSVI V REFF
Sbjct: 117 DSYFDVFATLPPIIPPGPIGILGFGAGSTARLILELYPPEIAVHGWELDPSVIDVGREFF 176
Query: 122 ALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLR 181
L KLE+ + DR+F+ +G+AL AS+K GFSGILVDLFSKGS++ EL+DP WE L+ LR
Sbjct: 177 GLSKLERDHKDRIFINIGDALNASVKTGFSGILVDLFSKGSVIKELQDPQVWEDLKSRLR 236
Query: 182 KGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTG 241
GRIMVNVGG CVEAEDS RDG +VME TL+ M +VFG KL+VL+LGN D S +ALTG
Sbjct: 237 YRGRIMVNVGGKCVEAEDSDRDGALVMEETLRVMSQVFGDKLFVLTLGNGNDSS-VALTG 295
Query: 242 ELPDLDDWKRALPRS-LKFYVDMWVPY 267
+LPDLD WK+ LPRS L+ YVDMW+PY
Sbjct: 296 DLPDLDAWKKRLPRSELRSYVDMWIPY 322
|
|
| TAIR|locus:2152140 AT5G44600 "AT5G44600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 86/262 (32%), Positives = 138/262 (52%)
Query: 13 IIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHS-ISYLFRSLTNTYFDAFAT 71
++ RSRYN I +++ A +R LLLD N+HS I+ ++ T +Y+D FA+
Sbjct: 76 VVTAVRSRYNEIVIVDT--------ASSRYLLLDSTKNVHSVINKGGQNWTGSYWDEFAS 127
Query: 72 XXXXXXXXXXXXXXFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEK--S 129
G G+AARL+L+L+P + GWE+D +I+ AR++ L +LEK S
Sbjct: 128 LPPIIPNGPVAIYGLGGGTAARLMLELWPTMQLEGWEIDEILIEKARDYLGLSELEKPTS 187
Query: 130 YPDRLFVYVGNALKAS--LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187
RL V+V +AL S + ++GI+VDLF+ G +L +L++ W +L L GRIM
Sbjct: 188 KGGRLCVHVDDALSPSQDVSGRYAGIIVDLFADGKVLDQLQEVPIWLELASRLMPNGRIM 247
Query: 188 VNVGGSCVEAEDSRR-----DGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTGE 242
VN G E ++ + D ++ +T+K + + F ++ + + + +ALTG
Sbjct: 248 VNCAGIETELQNGKPQLLLDDSAGMLNSTVKILSEAFPGQVCWKRTPDSEGLNFLALTGG 307
Query: 243 LPDLDDWKRALPRSLKFYVDMW 264
LPDL DW +P V W
Sbjct: 308 LPDLSDWSSKVPVRFCEVVKQW 329
|
|
| TAIR|locus:2152135 AT5G44590 "AT5G44590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 64/187 (34%), Positives = 104/187 (55%)
Query: 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE--KSYPDRLFVYVGNALKA 144
G G+AARLIL+L+P + GWE+D +I+ AR++ L +LE S RL ++V +AL
Sbjct: 147 GGGTAARLILELWPSTELEGWEIDEILIEKARDYLGLSELEIPTSKGGRLCIHVDDALSP 206
Query: 145 SLKDG--FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRR 202
D ++GI+VDLF+ G +L +L++ W +L L GR+MVN G E ++ +
Sbjct: 207 CQDDSKRYAGIIVDLFADGKVLDQLQEIPMWLELASRLMPNGRLMVNCAGIETEVKNGKP 266
Query: 203 -----DGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTGELPDLDDWKRALPRSL 257
D ++ +T+K + + F ++ + + + +ALTG LPDL DW +P L
Sbjct: 267 ELVLDDLAWMLNSTVKILSEAFPGQVSWKRTPDSEGLNFVALTGGLPDLSDWSSKVPVRL 326
Query: 258 KFYVDMW 264
V +W
Sbjct: 327 SESVKLW 333
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 269 | |||
| COG0421 | 282 | COG0421, SpeE, Spermidine synthase [Amino acid tra | 5e-10 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 4e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-05 | |
| COG0275 | 314 | COG0275, COG0275, Predicted S-adenosylmethionine-d | 1e-04 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-04 | |
| COG4262 | 508 | COG4262, COG4262, Predicted spermidine synthase wi | 2e-04 | |
| PRK04457 | 262 | PRK04457, PRK04457, spermidine synthase; Provision | 3e-04 | |
| TIGR00006 | 307 | TIGR00006, TIGR00006, 16S rRNA (cytosine(1402)-N(4 | 0.001 | |
| PRK03612 | 521 | PRK03612, PRK03612, spermidine synthase; Provision | 0.002 | |
| PLN02366 | 308 | PLN02366, PLN02366, spermidine synthase | 0.002 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.003 |
| >gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 53/261 (20%), Positives = 94/261 (36%), Gaps = 33/261 (12%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAF-- 69
+++ + +S Y I + E F ++L+LDG + T D F
Sbjct: 22 RVLYEEKSEYQDIEIFESED-----FG--KVLVLDGVVQL------------TERDEFIY 62
Query: 70 ---ATLPPILP---PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL 123
P+L P + I+G G G R +L P I E+DP+VI++AR++
Sbjct: 63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLP- 121
Query: 124 EKLEKSYPDRLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLR 181
E + R+ + + + ++ ++ F I+VD L +E R+ L+
Sbjct: 122 EPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALK 181
Query: 182 KGGRIMVNVGGSCVEAEDSRRDGKVVMEATLK-AMHKVFGKKLYVLSLGNRKDDSL-IAL 239
+ G I V GS ++ + V Y S A
Sbjct: 182 EDG-IFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAH 240
Query: 240 TGELPDLDDWKRALPRSLKFY 260
+ D + +LK+Y
Sbjct: 241 PLKSLDALQARALALLTLKYY 261
|
Length = 282 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-06
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143
+G G GS A + L+P A + G +L P ++++AR E + + R+ G+A
Sbjct: 8 IGCGTGSLAIELARLFPGARVTGVDLSPEMLELAR-----ENAKLALGPRITFVQGDAPD 62
Query: 144 A-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189
A L +GF + + G LL L + L L+ GGR+++N
Sbjct: 63 ALDLLEGFDAVFIG-GGGGDLLELL------DALASLLKPGGRLVLN 102
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-05
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143
G G+G+ P+A + G ELDP +AR AL L R+ V VG+A +
Sbjct: 7 PGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLA----PRVRVVVGDARE 62
Query: 144 ASLKDG--FSGILVDL-FSKGSLLSELEDPNTWEKLRQC---LRKGGRIMVNVGG 192
F +L + + + + L L+ GG ++V
Sbjct: 63 LLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITPA 117
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|223352 COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 86 FGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRL------FVYV 138
GAG +R IL+ P+ + G + DP I +A+E K + R+ F +
Sbjct: 32 LGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL------KEFDGRVTLVHGNFANL 85
Query: 139 GNALKASLKDGFSGILVDL 157
ALK GIL+DL
Sbjct: 86 AEALKELGIGKVDGILLDL 104
|
Length = 314 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143
+G G G+ R +L+ P G ++ P+ ++ A E A L + RL V L
Sbjct: 3 IGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDV-----LD 57
Query: 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTW-EKLRQCLRKGGRI 186
A D S D+ ++L L DP LR+ L+ GG +
Sbjct: 58 AIDLDPGS---FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 83 ILGFGAGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKL-EKSYPD-RLFVYVG 139
+LG G G A R +L YP+ I +LDP +I++A L L + S+ D R+ V
Sbjct: 295 VLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND 353
Query: 140 NALK--ASLKDGFSGILVDL-----FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191
+A + + D F ++VDL S G L S + L + L + G ++V G
Sbjct: 354 DAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSV----EFYRLLSRHLAETGLMVVQAG 408
|
Length = 508 |
| >gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143
+G G GS A+ I P+ E++P VI VAR F L + +R V + +
Sbjct: 73 IGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG----ERFEVIEADGAE 128
Query: 144 --ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193
A + ILVD F ++ L ++ R L G +VN+
Sbjct: 129 YIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180
|
Length = 262 |
| >gnl|CDD|232778 TIGR00006, TIGR00006, 16S rRNA (cytosine(1402)-N(4))-methyltransferase | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 76 LPPGPIGI---LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPD 132
L P GI G G ++ IL E + G + DP I A+E L
Sbjct: 16 LNIKPDGIYIDGTLGRGGHSKAILSQLGEGRLIGIDRDPQAIAFAKEIL--SDLRFVIIH 73
Query: 133 RLFVYVGNALKASLKDGFSGILVDL 157
F LK L GILVDL
Sbjct: 74 DNFANFFEYLKELLVTKIDGILVDL 98
|
This model describes RsmH, a 16S rRNA methyltransferase. Previously, this gene was designated MraW, known to be essential in E. coli and widely conserved in bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 307 |
| >gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 83 ILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL-EKSYPD-RLFVYVGN 140
+LG G G A R +L + +LDP++ ++AR AL L + D R+ V +
Sbjct: 303 VLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD 362
Query: 141 ALK--ASLKDGFSGILVDL-----FSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188
A L + F I+VDL + G L S + L++ L G ++V
Sbjct: 363 AFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSV----EFYRLLKRRLAPDGLLVV 413
|
Length = 521 |
| >gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 104 IHGWELDPSVIKVAREFFALEKLEKSYPD-RLFVYVGNA---LKASLKDGFSGILVDLFS 159
I E+D VI V+++FF L + D R+ +++G+ LK + + + I+VD
Sbjct: 118 IDICEIDKMVIDVSKKFFP--DLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSD 175
Query: 160 KGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAE 198
EL + +E + + LR GG + C +AE
Sbjct: 176 PVGPAQELFEKPFFESVARALRPGGVV-------CTQAE 207
|
Length = 308 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.003
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143
LG G G+ A + V G ++ P +++AR+ A D + V G+A +
Sbjct: 5 LGCGTGALALALASGPGARVT-GVDISPVALELARKAAAALL-----ADNVEVLKGDAEE 58
Query: 144 ASLKDG--FSGILVDLFSKGSLLSELEDPNTW-EKLRQCLRKGGRIMV 188
+ F I+ D L +ED + E+ R+ L+ GG +++
Sbjct: 59 LPPEADESFDVIISD----PPLHHLVEDLARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| PRK04457 | 262 | spermidine synthase; Provisional | 100.0 | |
| PLN02823 | 336 | spermine synthase | 99.98 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.97 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 99.97 | |
| PLN02366 | 308 | spermidine synthase | 99.97 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.96 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.96 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.96 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.95 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.93 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 99.91 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.75 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 99.7 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 99.66 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.63 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.62 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.62 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.59 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.58 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.57 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.57 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.56 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.55 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.54 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.53 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.53 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.53 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.53 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.53 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.53 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.51 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.51 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.51 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.51 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.5 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.49 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.49 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.48 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.48 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.48 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.47 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.47 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.46 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.46 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.46 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.46 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.46 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.45 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.45 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.44 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.44 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.44 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.44 | |
| PLN02476 | 278 | O-methyltransferase | 99.43 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.43 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.42 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.42 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.41 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.41 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.41 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.4 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.4 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.4 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.39 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.38 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.38 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.38 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.37 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.37 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.37 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.37 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.37 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.37 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.36 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.36 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.35 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.35 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.34 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.33 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.33 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.32 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.32 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.32 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.32 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.32 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.31 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.31 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.31 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.31 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.3 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.3 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.3 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.29 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.29 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.29 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.28 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.28 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.28 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.27 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.27 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.26 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.25 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.25 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.25 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.24 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.24 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.24 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.24 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.24 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.23 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.23 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.23 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.23 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.23 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.22 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.22 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.21 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.2 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.2 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.19 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.18 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.15 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.15 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.14 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.13 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.13 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.13 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.11 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.09 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.09 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.08 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.07 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.07 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.06 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.06 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.01 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.01 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.01 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.99 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.99 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.98 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.98 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.97 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.96 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.96 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.95 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.94 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.94 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.93 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.92 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.92 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.91 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.91 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.91 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.9 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.9 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.9 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.89 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.85 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.83 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.83 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.81 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.8 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.79 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.79 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.79 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.75 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.74 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.72 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.72 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.71 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.7 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.7 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.69 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.69 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.67 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.67 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.64 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.61 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.6 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.58 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.52 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.51 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.5 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.5 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.49 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.47 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.46 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.46 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.44 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.44 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.42 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.39 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.38 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.37 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.36 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.36 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.35 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.32 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.31 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.31 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.29 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.28 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.25 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.23 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.23 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.22 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.21 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.21 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 98.18 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.14 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.13 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.13 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.12 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.12 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.09 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.03 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.96 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.94 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.93 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.93 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.87 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.85 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.81 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.8 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.8 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 97.71 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.69 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.69 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.68 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.66 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.65 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.59 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.58 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.57 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.56 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.53 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.47 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.46 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.44 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 97.42 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.36 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.35 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.34 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.32 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.31 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.31 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.28 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.24 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.24 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.23 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.18 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 97.18 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.1 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.1 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.08 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.06 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.99 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.96 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 96.83 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.76 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.73 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.71 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.69 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.67 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.61 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 96.6 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.56 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.48 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.46 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.25 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.23 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 96.2 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.16 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.12 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.12 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.0 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.94 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.88 | |
| PHA01634 | 156 | hypothetical protein | 95.86 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.67 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.66 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 95.54 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.53 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 95.34 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.3 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.22 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.19 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 95.19 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.18 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.16 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.95 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.92 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.8 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.77 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.77 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.73 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.67 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.55 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 94.48 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.39 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 94.34 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.34 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.27 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.25 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 94.14 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.05 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 93.92 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.8 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 93.79 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.39 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 93.37 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 93.36 | |
| PLN02256 | 304 | arogenate dehydrogenase | 93.24 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.2 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 93.19 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 93.14 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.98 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 92.94 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 92.92 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 92.86 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 92.77 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 92.77 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 92.68 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 92.63 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.56 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 92.49 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.45 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 92.33 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 92.27 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 92.13 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 92.11 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.06 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.06 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 92.05 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 92.04 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 91.99 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 91.96 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 91.78 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.77 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 91.73 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 91.53 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.52 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.51 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 91.4 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 91.2 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 91.08 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 90.97 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 90.88 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.87 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 90.87 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.84 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 90.78 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.64 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.59 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 90.59 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 90.56 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 90.46 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 90.44 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 90.42 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 90.38 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 90.36 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 90.34 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.23 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 90.22 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 90.2 | |
| PLN02712 | 667 | arogenate dehydrogenase | 90.19 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.13 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 90.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 89.79 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 89.76 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 89.75 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.63 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 89.54 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 89.44 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 89.43 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 89.39 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 89.31 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.27 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 89.25 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 89.21 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 89.07 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 89.07 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 89.05 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 88.91 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 88.85 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 88.79 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 88.75 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 88.72 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 88.71 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 88.33 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 88.3 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 88.25 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 88.14 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 88.14 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 88.14 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 88.13 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 88.09 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 87.98 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.94 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 87.82 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 87.7 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 87.54 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 87.51 | |
| PRK13699 | 227 | putative methylase; Provisional | 87.37 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 87.36 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 87.27 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 87.08 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 87.06 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 87.0 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 86.91 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 86.88 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 86.88 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 86.75 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 86.72 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 86.62 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 86.55 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 86.43 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 86.06 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 85.98 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 85.95 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 85.95 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 85.88 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 85.83 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 85.76 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 85.55 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 85.54 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 85.5 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 85.47 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 85.26 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 85.21 | |
| PF14314 | 675 | Methyltrans_Mon: Virus-capping methyltransferase | 85.11 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 85.08 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 85.02 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 84.69 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 84.59 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 84.4 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 84.4 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 84.38 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 84.32 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 84.19 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 84.19 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 84.1 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 84.01 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 83.56 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 83.51 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 83.5 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 83.32 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 83.29 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 83.27 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 83.25 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.25 | |
| PLN02712 | 667 | arogenate dehydrogenase | 83.23 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 83.19 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 83.12 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 82.9 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 82.88 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 82.64 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 82.46 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 82.37 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 82.22 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 82.17 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 82.15 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 82.14 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 82.14 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 81.9 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 81.89 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 81.46 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 81.39 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 81.26 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 81.24 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 81.21 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 81.05 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 80.94 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 80.93 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 80.88 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 80.67 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 80.57 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 80.56 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 80.52 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 80.46 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 80.27 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.24 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 80.22 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 80.21 |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=245.88 Aligned_cols=229 Identities=20% Similarity=0.246 Sum_probs=186.5
Q ss_pred EEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCc--ccchHHHHHhcCCC-CCCCCcEEEEcCccc
Q 035593 13 IIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS--LTNTYFDAFATLPP-ILPPGPIGILGFGAG 89 (269)
Q Consensus 13 ~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~--l~~~y~~~~~~~~~-l~~~~~VL~iG~G~G 89 (269)
.+.-.++.|+.|.|+|... .|+|++++. .+||.+.++++ +.+.|++.|+.... ..++++||+||||+|
T Consensus 8 ~~~~~~~~~~~i~v~e~~~--------~R~L~f~~~-~~qs~~~~~~P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~G 78 (262)
T PRK04457 8 RLRPAKAGFPEVGVSEEGG--------VRSLHLGSD-TVQSSMRIDDPSELELAYTRAMMGFLLFNPRPQHILQIGLGGG 78 (262)
T ss_pred hhccccccCCCcEEEecCC--------EEEEEECCC-cceeeeecCCcccccCHHHHHHHHHHhcCCCCCEEEEECCCHh
Confidence 3444577899999999863 799999875 69999999875 56789999964333 335789999999999
Q ss_pred HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCCC
Q 035593 90 SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSEL 167 (269)
Q Consensus 90 ~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~l 167 (269)
.++.++++++|+.+|++||+||++++.|+++|+.+. .+++++++++|++++ ...++||+|++|+++....+.++
T Consensus 79 ~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l 154 (262)
T PRK04457 79 SLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDAL 154 (262)
T ss_pred HHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCcccc
Confidence 999999998999999999999999999999998653 257999999999988 44568999999998776666788
Q ss_pred CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcCCCCceEEEEecC-CC-C-
Q 035593 168 EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTG-EL-P- 244 (269)
Q Consensus 168 ~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~~~~n~v~~~~~~-~~-~- 244 (269)
.+.+|++.++++|+|||++++|.++.. ......+++++++|++.+++++.+.++|.+++|++. +. .
T Consensus 155 ~t~efl~~~~~~L~pgGvlvin~~~~~-----------~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~~~~~ 223 (262)
T PRK04457 155 CTQPFFDDCRNALSSDGIFVVNLWSRD-----------KRYDRYLERLESSFEGRVLELPAESHGNVAVFAFKSAPKELR 223 (262)
T ss_pred CcHHHHHHHHHhcCCCcEEEEEcCCCc-----------hhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCCCCcC
Confidence 899999999999999999999998652 246788999999998678888888889999999874 42 2
Q ss_pred ------CHHHHHHhcCcchhhccccee
Q 035593 245 ------DLDDWKRALPRSLKFYVDMWV 265 (269)
Q Consensus 245 ------~~~~~~~~l~~~~~~~~~~~~ 265 (269)
....+.+.++.++..++.++.
T Consensus 224 ~~~l~~~a~~l~~~~~~~~~~~~~~~~ 250 (262)
T PRK04457 224 WDKLRKRAKKLENEHGLDFHRFVAKLK 250 (262)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 223345556677776666654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-31 Score=234.70 Aligned_cols=225 Identities=17% Similarity=0.263 Sum_probs=172.7
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG 85 (269)
....++|++++|+||+|.|+++.. + +++|++|+ .+||.. ..++.|++.|++.+.+. .+++||+||
T Consensus 45 ~~~~~vl~~~~S~yQ~I~V~~~~~-----~--g~~L~lDg--~~qs~~----~de~~YhE~l~h~~l~~~~~pk~VLiiG 111 (336)
T PLN02823 45 YAVNSVLHTGTSEFQDIALVDTKP-----F--GKVLIIDG--KMQSAE----ADEFVYHESLVHPALLHHPNPKTVFIMG 111 (336)
T ss_pred EEeccEEEeccCCCeEEEEEECCC-----C--ceEEEECC--cccccc----chHHHHHHHHHhHHHhhCCCCCEEEEEC
Confidence 445689999999999999999975 2 68999998 688764 24567999887665433 478999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCC-
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGS- 162 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~- 162 (269)
+|+|.++++++++.+..+|++|||||+++++|+++|..+. ....++|++++.+|++.+ ...++||+|++|++++..
T Consensus 112 gG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~ 190 (336)
T PLN02823 112 GGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEG 190 (336)
T ss_pred CCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhhCCCCccEEEecCCCcccc
Confidence 9999999999986556799999999999999999987532 123479999999999998 456789999999877532
Q ss_pred -CCCCCCcHHHHH-HHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE--cCCC--CceEE
Q 035593 163 -LLSELEDPNTWE-KLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS--LGNR--KDDSL 236 (269)
Q Consensus 163 -~~~~l~~~e~~~-~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~--~~~~--~n~v~ 236 (269)
.+.+|++.+||+ .++++|+|||++++|..+.... .....+..++++++++|+ ++..+. ++.. ....+
T Consensus 191 ~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~------~~~~~~~~i~~tl~~vF~-~v~~y~~~vPsf~~~w~f~ 263 (336)
T PLN02823 191 GPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGIL------THKEVFSSIYNTLRQVFK-YVVPYTAHVPSFADTWGWV 263 (336)
T ss_pred CcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchh------ccHHHHHHHHHHHHHhCC-CEEEEEeecCCCCCceEEE
Confidence 245799999999 9999999999999997653210 113457889999999997 555543 3322 22356
Q ss_pred EEecCCCC--CHHHHHHhc
Q 035593 237 IALTGELP--DLDDWKRAL 253 (269)
Q Consensus 237 ~~~~~~~~--~~~~~~~~l 253 (269)
+|++.+.. +.+.+.+++
T Consensus 264 ~aS~~~~~~~~~~~~~~~~ 282 (336)
T PLN02823 264 MASDHPFADLSAEELDSRI 282 (336)
T ss_pred EEeCCccccCChhHHHHhh
Confidence 78877643 445455544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=229.81 Aligned_cols=214 Identities=19% Similarity=0.251 Sum_probs=167.4
Q ss_pred CCCCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEE
Q 035593 6 VPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGI 83 (269)
Q Consensus 6 ~~~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~ 83 (269)
......++|++.+|+||+|.|++++. + +|+|++|+ .+|+.. ..++.|++.|++.|.+. ++++||+
T Consensus 16 ~~~~~~~~l~~~~s~yq~i~v~~~~~-----~--g~~l~lDg--~~q~~~----~de~~Y~e~l~h~~~~~~~~p~~VL~ 82 (283)
T PRK00811 16 QSFRVKKVLYEEKSPFQRIEIFETPE-----F--GRLLALDG--CVMTTE----RDEFIYHEMMTHVPLFAHPNPKRVLI 82 (283)
T ss_pred eEEeeccEEEEcCCCCeeEEEEEcCC-----c--cEEEEECC--eeeecC----cchhhHHHHhhhHHHhhCCCCCEEEE
Confidence 34456789999999999999999975 2 69999999 688864 35678999887665543 5889999
Q ss_pred EcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCC
Q 035593 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKG 161 (269)
Q Consensus 84 iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~ 161 (269)
||||+|.++++++++.+..+|++||+|++++++|+++|.....+...++|++++.+|++.+ ...++||+|++|++++.
T Consensus 83 iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 83 IGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV 162 (283)
T ss_pred EecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCC
Confidence 9999999999999854456999999999999999999842111112378999999999998 44678999999998775
Q ss_pred CCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCCC--Cce-EE
Q 035593 162 SLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGNR--KDD-SL 236 (269)
Q Consensus 162 ~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~~--~n~-v~ 236 (269)
..+.++++.+||+.++++|+|||+++++..++.. + ...+.++.++++++|+ ++..+ .++.. +.+ .+
T Consensus 163 ~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~-------~-~~~~~~i~~tl~~~F~-~v~~~~~~vp~~~~~~w~f~ 233 (283)
T PRK00811 163 GPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFY-------Q-ADEIKDMHRKLKEVFP-IVRPYQAAIPTYPSGLWSFT 233 (283)
T ss_pred CchhhhhHHHHHHHHHHhcCCCcEEEEeCCCccc-------C-HHHHHHHHHHHHHHCC-CEEEEEeECCcccCchheeE
Confidence 4455788999999999999999999998766532 2 3468899999999997 45444 33332 332 36
Q ss_pred EEecC
Q 035593 237 IALTG 241 (269)
Q Consensus 237 ~~~~~ 241 (269)
+|++.
T Consensus 234 ~as~~ 238 (283)
T PRK00811 234 FASKN 238 (283)
T ss_pred EeecC
Confidence 67763
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=223.25 Aligned_cols=204 Identities=23% Similarity=0.377 Sum_probs=162.5
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG 85 (269)
.+-.+++++.+|+||+|.|++++. | +++|.+|+ .+|+.. ..+..|++.|++.|.+. ++++||.||
T Consensus 18 ~~v~~vl~~~~s~yQ~i~i~~~~~-----~--G~~l~ldg--~~q~~e----~de~~y~e~l~h~~~~~~~~p~~VLiiG 84 (246)
T PF01564_consen 18 YRVEEVLYEEKSPYQHIEIFESSP-----F--GRILVLDG--DVQLSE----RDEFIYHEMLVHPPLLLHPNPKRVLIIG 84 (246)
T ss_dssp EEEEEEEEEEEESSSEEEEEEETT-----T--EEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSST-EEEEEE
T ss_pred EEEEEEEEccCCCCCcEEEEEecC-----c--CcEEEECC--eEEEEE----echHHHHHHHhhhHhhcCCCcCceEEEc
Confidence 444678999999999999999964 4 79999999 688764 35678999987665432 599999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCC-CeeEEEEcCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKD-GFSGILVDLFSKGS 162 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~-~yD~I~~d~~~~~~ 162 (269)
+|+|..+++++++.+..+|++|||||+++++|+++|+.... ...++|++++.+||+.+ ...+ +||+|++|++++..
T Consensus 85 gG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~-~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~ 163 (246)
T PF01564_consen 85 GGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE-GLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDG 163 (246)
T ss_dssp STTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT-TGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTS
T ss_pred CCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc-ccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCC
Confidence 99999999999865567999999999999999999864221 12479999999999998 4455 89999999999766
Q ss_pred CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCce--EEEEcCCCCce
Q 035593 163 LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKL--YVLSLGNRKDD 234 (269)
Q Consensus 163 ~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v--~~~~~~~~~n~ 234 (269)
....+++.+||+.++++|+|+|++++|..++.. ....+..+.++++++|+ .+ +...++...+.
T Consensus 164 ~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~--------~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~ 228 (246)
T PF01564_consen 164 PAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL--------HPELFKSILKTLRSVFP-QVKPYTAYVPSYGSG 228 (246)
T ss_dssp CGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT--------THHHHHHHHHHHHTTSS-EEEEEEEECTTSCSS
T ss_pred CcccccCHHHHHHHHhhcCCCcEEEEEccCccc--------chHHHHHHHHHHHHhCC-ceEEEEEEcCeeccc
Confidence 666799999999999999999999999865542 14568889999999998 44 44466665554
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=223.52 Aligned_cols=212 Identities=19% Similarity=0.251 Sum_probs=166.2
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~iG 85 (269)
.+-.++|++.+|+||+|.|++++. + +|+|++|+ .+|+.. ..++.|++.|++.|.+ .++++||+||
T Consensus 33 ~~v~~~l~~~~s~yQ~i~v~~~~~-----~--g~~L~lDg--~~q~~~----~de~~Y~e~l~h~~l~~~~~pkrVLiIG 99 (308)
T PLN02366 33 LKVEKVLFQGKSDFQDVLVFESAT-----Y--GKVLVLDG--VIQLTE----RDECAYQEMITHLPLCSIPNPKKVLVVG 99 (308)
T ss_pred EEEeeEEEeccCCCeeEEEEEcCC-----C--ceEEEECC--EeeecC----ccHHHHHHHHHHHHHhhCCCCCeEEEEc
Confidence 445589999999999999999975 2 69999999 678754 3468899988766543 4589999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cCCCeeEEEEcCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LKDGFSGILVDLFSKGS 162 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~~~yD~I~~d~~~~~~ 162 (269)
||+|.++++++++.+..+|++||||++|++.|+++|..... ..+++|++++++|++.+ . ..++||+|++|++++..
T Consensus 100 gG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~ 178 (308)
T PLN02366 100 GGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVG 178 (308)
T ss_pred CCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCC
Confidence 99999999999853346999999999999999999853111 13478999999999988 2 25689999999988765
Q ss_pred CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEE--EEcCCC--Cce-EEE
Q 035593 163 LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYV--LSLGNR--KDD-SLI 237 (269)
Q Consensus 163 ~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~--~~~~~~--~n~-v~~ 237 (269)
...++++.+||+.++++|+|||+++++..++.. . ...+..+.++++++|+..+.. ..++.. +.+ .++
T Consensus 179 ~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~-------~-~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~ 250 (308)
T PLN02366 179 PAQELFEKPFFESVARALRPGGVVCTQAESMWL-------H-MDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVL 250 (308)
T ss_pred chhhhhHHHHHHHHHHhcCCCcEEEECcCCccc-------c-hHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEE
Confidence 556789999999999999999999998766542 1 446889999999999534433 234433 333 566
Q ss_pred EecC
Q 035593 238 ALTG 241 (269)
Q Consensus 238 ~~~~ 241 (269)
|+++
T Consensus 251 as~~ 254 (308)
T PLN02366 251 CSKE 254 (308)
T ss_pred EECC
Confidence 7765
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-29 Score=220.57 Aligned_cols=213 Identities=22% Similarity=0.217 Sum_probs=162.6
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG 85 (269)
.+..++|++++|+||+|.|+|+.. ..|++|+ .+|+.. .-++.||+.|++.+. ...+++||+||
T Consensus 94 ~~~~~vl~~~~S~yQ~I~I~et~~---------~~L~LDG--~~Q~se----~DE~iYHE~Lvhp~m~~h~~PkrVLIIG 158 (374)
T PRK01581 94 AGEHTNLFAEKSNYQNINLLQVSD---------IRLYLDK--QLQFSS----VDEQIYHEALVHPIMSKVIDPKRVLILG 158 (374)
T ss_pred hcccCEEEecCCCCceEEEEEcCC---------EEEEECC--eecccc----ccHHHHHHHHHHHHHHhCCCCCEEEEEC
Confidence 345689999999999999999963 3599999 688765 346779999876443 34589999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc--cCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE--KSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKG 161 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~--~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~ 161 (269)
||+|..++.++++.+..+|++|||||+|+++|++++.++.+. ...++|++++++|++++ ...++||+|++|++++.
T Consensus 159 gGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~ 238 (374)
T PRK01581 159 GGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPA 238 (374)
T ss_pred CCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCcc
Confidence 999999999998645679999999999999999865544322 23579999999999998 45678999999987764
Q ss_pred C-CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCc-eEEEEcCCCCc-e-EEE
Q 035593 162 S-LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKK-LYVLSLGNRKD-D-SLI 237 (269)
Q Consensus 162 ~-~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~-v~~~~~~~~~n-~-v~~ 237 (269)
. ....+++.+||+.++++|+|||+++++..++.. ....+..+.++++++|... .+...++..+. + ..+
T Consensus 239 ~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--------~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~ 310 (374)
T PRK01581 239 TELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--------APLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHI 310 (374)
T ss_pred ccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--------hHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEE
Confidence 3 245788999999999999999999998765532 1334567889999999732 22223343333 2 466
Q ss_pred EecCCC
Q 035593 238 ALTGEL 243 (269)
Q Consensus 238 ~~~~~~ 243 (269)
|++.+.
T Consensus 311 as~~~~ 316 (374)
T PRK01581 311 AANSAY 316 (374)
T ss_pred EeCCcc
Confidence 666554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=213.70 Aligned_cols=211 Identities=21% Similarity=0.336 Sum_probs=166.5
Q ss_pred CCCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEE
Q 035593 7 PADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGIL 84 (269)
Q Consensus 7 ~~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~i 84 (269)
...-.+++++++|.||.|.++++.. | +++|.+|+ .+|+.. ..++.|++.+++.|.+. .+++||+|
T Consensus 17 ~~~v~~~l~~~ks~~q~i~i~~~~~-----~--g~~l~ldg--~~q~~e----~de~~yhEml~h~~~~ah~~pk~VLii 83 (282)
T COG0421 17 MFRVERVLYEEKSEYQDIEIFESED-----F--GKVLVLDG--VVQLTE----RDEFIYHEMLAHVPLLAHPNPKRVLII 83 (282)
T ss_pred eeEeeeeeeeccCCceEEEEEeccc-----c--ceEEEecC--hhhhcc----chhHHHHHHHHhchhhhCCCCCeEEEE
Confidence 3345678999999999999999764 4 78999999 678754 45678888877766543 36799999
Q ss_pred cCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCC
Q 035593 85 GFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGS 162 (269)
Q Consensus 85 G~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~ 162 (269)
|+|.|+.+++++++.+-.++++|||||+++++||++|+...... +++|++++.+|+.++ ...++||+|++|.+++.+
T Consensus 84 GgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~g 162 (282)
T COG0421 84 GGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGA-DDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVG 162 (282)
T ss_pred CCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccccc-CCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCC
Confidence 99999999999998777899999999999999999997543222 279999999999999 445589999999999865
Q ss_pred CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC-ceEEEEcCCCCce---EEEE
Q 035593 163 LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK-KLYVLSLGNRKDD---SLIA 238 (269)
Q Consensus 163 ~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~-~v~~~~~~~~~n~---v~~~ 238 (269)
....|++.+||+.|+++|+++|++++|..++.. . ........+.++++|+. ..+...++..... +.++
T Consensus 163 p~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~-------~-~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~ 234 (282)
T COG0421 163 PAEALFTEEFYEGCRRALKEDGIFVAQAGSPFL-------Q-DEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVA 234 (282)
T ss_pred cccccCCHHHHHHHHHhcCCCcEEEEecCCccc-------c-hHHHHHHHHHHHhhccccccceeccceecCCceEEEEe
Confidence 556899999999999999999999999665432 1 23567888999999973 2444444443322 4555
Q ss_pred e
Q 035593 239 L 239 (269)
Q Consensus 239 ~ 239 (269)
+
T Consensus 235 s 235 (282)
T COG0421 235 S 235 (282)
T ss_pred e
Confidence 5
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=209.56 Aligned_cols=210 Identities=16% Similarity=0.234 Sum_probs=163.4
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG 85 (269)
.+-.++|++.+|+||+|.|+++.. + +|+|++|+ .+|+.. ..++.|++.+++.+.+. .+++||+||
T Consensus 14 ~~~~~~l~~~~s~~q~i~v~~~~~-----~--g~~l~ldg--~~q~~~----~~e~~y~e~l~~~~l~~~~~p~~VL~iG 80 (270)
T TIGR00417 14 MKVKKVLYHEKSEFQDLEIFETEE-----F--GNVLVLDG--VVQTTE----RDEFIYHEMIAHVPLFTHPNPKHVLVIG 80 (270)
T ss_pred EEeeeEEEEccCCCeeEEEEEcCC-----C--ceEEEECC--cccccC----chHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence 445689999999999999999975 2 69999999 688863 34578998887655432 478999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSL 163 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~ 163 (269)
||+|.+++.++++.+..++++||+|+++++.|++++.... ....+++++++.+|++++ ...++||+|++|.+.+...
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~-~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~ 159 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA-GSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGP 159 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc-ccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCc
Confidence 9999999999886556799999999999999999874211 112468999999999987 4467999999998876544
Q ss_pred CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCC--CC-ceEEEE
Q 035593 164 LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGN--RK-DDSLIA 238 (269)
Q Consensus 164 ~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~--~~-n~v~~~ 238 (269)
...+++.+|++.++++|+|||+++++..++.. ....+..+.++++++|++ +..+ .++. ++ -..++|
T Consensus 160 ~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~--------~~~~~~~~~~tl~~~F~~-v~~~~~~vp~~~~g~~~~~~a 230 (270)
T TIGR00417 160 AETLFTKEFYELLKKALNEDGIFVAQSESPWI--------QLELITDLKRDVKEAFPI-TEYYTANIPTYPSGLWTFTIG 230 (270)
T ss_pred ccchhHHHHHHHHHHHhCCCcEEEEcCCCccc--------CHHHHHHHHHHHHHHCCC-eEEEEEEcCccccchhEEEEE
Confidence 55788899999999999999999998655432 145678889999999984 4333 3332 23 345667
Q ss_pred ec
Q 035593 239 LT 240 (269)
Q Consensus 239 ~~ 240 (269)
++
T Consensus 231 s~ 232 (270)
T TIGR00417 231 SK 232 (270)
T ss_pred EC
Confidence 66
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=199.44 Aligned_cols=200 Identities=15% Similarity=0.115 Sum_probs=153.2
Q ss_pred CCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEcC
Q 035593 9 DDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILGF 86 (269)
Q Consensus 9 ~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG~ 86 (269)
.-.+++++.+|+||+|.|+|+.. | +|+|.+|+ +|.. ..-++.||+.|++.|.+. +|++||+||+
T Consensus 16 ~v~~~L~~~kS~~Q~i~i~es~~-----f--Gr~LvLD~---~~~t----e~dEfiYHEmLvHppl~~h~~pk~VLIiGG 81 (262)
T PRK00536 16 TIEAKLLDVRSEHNILEIFKSKD-----F--GEIAMLNK---QLLF----KNFLHIESELLAHMGGCTKKELKEVLIVDG 81 (262)
T ss_pred EEEEEEEccCCCCcEEEEEEccc-----c--ccEEEEee---eeee----cchhhhHHHHHHHHHHhhCCCCCeEEEEcC
Confidence 34578999999999999999985 4 79999994 4432 235688999988776543 5899999999
Q ss_pred cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCC
Q 035593 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSE 166 (269)
Q Consensus 87 G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~ 166 (269)
|.|..+++++++ |. +|+.||||++|+++||+++..-. .+.++||++++.. ..+ ...++||+||+|..
T Consensus 82 GDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs~-------- 148 (262)
T PRK00536 82 FDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQE-------- 148 (262)
T ss_pred CchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHH-HhhcCCCEEEeeh-hhh-ccCCcCCEEEEcCC--------
Confidence 999999999995 55 99999999999999999985211 2457899999972 111 23478999999953
Q ss_pred CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC-ceEEEEcCCCCce-EEEEecCCCC
Q 035593 167 LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK-KLYVLSLGNRKDD-SLIALTGELP 244 (269)
Q Consensus 167 l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~-~v~~~~~~~~~n~-v~~~~~~~~~ 244 (269)
.+++||+.++++|+|||+++++..++... ...+..+.++++++|+. ..|...++..+.+ ..+|++...+
T Consensus 149 -~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~--------~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~~p 219 (262)
T PRK00536 149 -PDIHKIDGLKRMLKEDGVFISVAKHPLLE--------HVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKTHP 219 (262)
T ss_pred -CChHHHHHHHHhcCCCcEEEECCCCcccC--------HHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCCCC
Confidence 35799999999999999999998777531 44688999999999972 2344444444433 4667765333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=205.33 Aligned_cols=217 Identities=21% Similarity=0.237 Sum_probs=159.4
Q ss_pred CCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEcC
Q 035593 9 DDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILGF 86 (269)
Q Consensus 9 ~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG~ 86 (269)
...+++++++|+||+|.|.+++...| +.+.|++|+ .+|... .-+..|++.+.+.+. ..++++||+|||
T Consensus 237 ~~~~v~~~~~s~yq~i~v~~~~~~~~----~~~~L~ldG--~~q~s~----~de~~y~e~l~~~~l~~~~~~~rVL~IG~ 306 (521)
T PRK03612 237 YGDPVVYAEQTPYQRIVVTRRGNGRG----PDLRLYLNG--RLQFSS----RDEYRYHEALVHPAMAASARPRRVLVLGG 306 (521)
T ss_pred ccCeEEEEccCCCeEEEEEEecCCCC----cceEEEECC--EeeccC----ccHHHHHHHHHHHHHhhCCCCCeEEEEcC
Confidence 45689999999999999999753111 247889999 567433 124668887754332 235889999999
Q ss_pred cccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccc--cCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCC
Q 035593 87 GAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLE--KSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKG 161 (269)
Q Consensus 87 G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~--~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~ 161 (269)
|+|..+++++++ +. .+|++||+||+|++.|++++.++.+. ..+++|++++++|++++ ..+++||+|++|..++.
T Consensus 307 G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 307 GDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCC
Confidence 999999999974 65 79999999999999999965433221 23468999999999998 45679999999987664
Q ss_pred CC-CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEcCCCCce-EEEE
Q 035593 162 SL-LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSLGNRKDD-SLIA 238 (269)
Q Consensus 162 ~~-~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~~~~n~-v~~~ 238 (269)
.. ..++++.+|++.++++|+|||++++|..++.. . ...+.++.++++++ |....+...++..+.+ ..+|
T Consensus 386 ~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~-------~-~~~~~~i~~~l~~~gf~v~~~~~~vps~g~w~f~~a 457 (521)
T PRK03612 386 NPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF-------A-PKAFWSIEATLEAAGLATTPYHVNVPSFGEWGFVLA 457 (521)
T ss_pred CcchhccchHHHHHHHHHhcCCCeEEEEecCCccc-------c-hHHHHHHHHHHHHcCCEEEEEEeCCCCcchhHHHee
Confidence 32 24788999999999999999999999866542 1 34577899999999 7322333344444332 3566
Q ss_pred ecCCCC
Q 035593 239 LTGELP 244 (269)
Q Consensus 239 ~~~~~~ 244 (269)
++.+.+
T Consensus 458 s~~~~~ 463 (521)
T PRK03612 458 GAGARP 463 (521)
T ss_pred eCCCCc
Confidence 665433
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=181.90 Aligned_cols=211 Identities=21% Similarity=0.259 Sum_probs=163.4
Q ss_pred CccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCC--CCCCCCcEEEEcCc
Q 035593 10 DVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLP--PILPPGPIGILGFG 87 (269)
Q Consensus 10 ~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~--~l~~~~~VL~iG~G 87 (269)
..++||..+|+||.|.|.+-.+ -+.|++|+ ..|-.. .-+..||+.+..-+ .+....+||++|+|
T Consensus 234 gdeIIh~~qspYQ~iVvTr~g~--------d~rLYldG--~LQfsT----rDe~RYhEsLV~pals~~~~a~~vLvlGGG 299 (508)
T COG4262 234 GDEIIHAIQSPYQRIVVTRRGD--------DLRLYLDG--GLQFST----RDEYRYHESLVYPALSSVRGARSVLVLGGG 299 (508)
T ss_pred cCceeeeccCccceEEEEEecC--------ceEEEEcC--ceeeee----chhhhhhheeeecccccccccceEEEEcCC
Confidence 3579999999999999999764 35688998 467543 23567998875332 23457899999999
Q ss_pred ccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCcc--ccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCC
Q 035593 88 AGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALE--KLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGS 162 (269)
Q Consensus 88 ~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~--~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~ 162 (269)
.|..++++++ +| -.+|+-||+||+|++.+++..-+. +-++..+||++++..|+.+| ...++||+||+|..++..
T Consensus 300 DGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~t 378 (508)
T COG4262 300 DGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPST 378 (508)
T ss_pred chHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCC
Confidence 9999999998 79 569999999999999999654221 11355789999999999999 566799999999998864
Q ss_pred C-CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEcCCCCce-EEEEe
Q 035593 163 L-LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSLGNRKDD-SLIAL 239 (269)
Q Consensus 163 ~-~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~~~~n~-v~~~~ 239 (269)
. ...+++.|||..++++|+++|+++++..+++.. ...+-++.++++++ |...-|.+.++.-+.+ +++|.
T Consensus 379 ps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t--------p~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~ 450 (508)
T COG4262 379 PSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT--------PRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAA 450 (508)
T ss_pred cchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC--------CceeeeehhHHHhCcceeeeeEEecCcccccceeecc
Confidence 3 247899999999999999999999999888641 44677889999986 4222344456665554 56666
Q ss_pred cCCC
Q 035593 240 TGEL 243 (269)
Q Consensus 240 ~~~~ 243 (269)
..+.
T Consensus 451 ~~~~ 454 (508)
T COG4262 451 PGDA 454 (508)
T ss_pred cccC
Confidence 6654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-18 Score=129.46 Aligned_cols=110 Identities=29% Similarity=0.492 Sum_probs=87.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc-cccccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA-LKASLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~-~~~~~~~~yD~I~~ 155 (269)
|+.+|||||||+|.++.++++++++.+|++||+||++++.|++++.... ..++++++++|+ ......++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDAEFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCCHGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECccccCcccCCCCCEEEE
Confidence 5689999999999999999998899999999999999999999982111 257999999999 44466678999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+......+.-...++++.+++.|+|||+++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 76111111111123578999999999999999875
|
... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-17 Score=149.47 Aligned_cols=191 Identities=21% Similarity=0.260 Sum_probs=154.2
Q ss_pred eEEEEecCCCceeeeeecCC--cccchHHHHHh-cCCCC--------CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEE
Q 035593 40 ARLLLLDGPGNIHSISYLFR--SLTNTYFDAFA-TLPPI--------LPPGPIGILGFGAGSAARLILDLYPEAVIHGWE 108 (269)
Q Consensus 40 ~r~L~~~~~~~~qs~~~~~~--~l~~~y~~~~~-~~~~l--------~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vE 108 (269)
++....++...+||....++ .+...||+.|. .++.+ ....++|++|.|+|.++.++...+|..++++||
T Consensus 247 ~~l~~~~n~nv~q~~~k~~r~~~l~s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve 326 (482)
T KOG2352|consen 247 RRLPPCGNMNVVQSEAKKDRKPELASQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVE 326 (482)
T ss_pred ccccCCCCcceecCchhcccCcccCcchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEE
Confidence 44455565567888765444 46788999984 33221 126799999999999999999999999999999
Q ss_pred CChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------ccCCCeeEEEEcCCCCCCC-----CCCCCcHHHHHH
Q 035593 109 LDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------SLKDGFSGILVDLFSKGSL-----LSELEDPNTWEK 175 (269)
Q Consensus 109 idp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------~~~~~yD~I~~d~~~~~~~-----~~~l~~~e~~~~ 175 (269)
+||+|++.|+.+|++.. +.|.+++..|+.++ ....+||++++|..+++.. ++.+....++..
T Consensus 327 ~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~ 401 (482)
T KOG2352|consen 327 IDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP 401 (482)
T ss_pred EChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH
Confidence 99999999999999865 45899999999987 1456899999998777521 235667899999
Q ss_pred HHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcCCCCceEEEEecCCCCCH
Q 035593 176 LRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTGELPDL 246 (269)
Q Consensus 176 ~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~~~~n~v~~~~~~~~~~~ 246 (269)
++..|.|.|++++|+..+. ..+..+++..|+.+|+ ..+.+..+++.|.+++|...+....
T Consensus 402 ~k~~l~p~g~f~inlv~r~----------~~~~~~~~~~l~~vf~-~l~~~~~~~~~N~il~~~~~~~~~~ 461 (482)
T KOG2352|consen 402 VKMILPPRGMFIINLVTRN----------SSFKDEVLMNLAKVFP-QLYHHQLEEDVNEILIGQMPPKQKP 461 (482)
T ss_pred HhhccCccceEEEEEecCC----------cchhHHHHHhhhhhhH-HHhhhhccCCCceeEEeecChhcCc
Confidence 9999999999999996552 4567899999999997 7888888899999999998887433
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-16 Score=135.81 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=153.8
Q ss_pred ccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEcCcc
Q 035593 11 VKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILGFGA 88 (269)
Q Consensus 11 ~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG~G~ 88 (269)
.++++.++|.||.+.|+++.. + ++.|.+|+ .+|-.. .-++.|.+.++++|. +.+|+++|+||.|.
T Consensus 66 e~vl~~ekS~~qdvlvf~s~t-----y--g~vlvlDg--viqlte----~de~~Yqemi~~l~l~s~~npkkvlVVgggD 132 (337)
T KOG1562|consen 66 EKVLHDEKSDSQDVLVFESAT-----Y--GKVLVLDG--VIQLTE----RDEFAYQEMIAHLALCSHPNPKKVLVVGGGD 132 (337)
T ss_pred eeecccCchhHHHHHHHHHhh-----h--heeeeeCC--eeeCCc----cccccceeeeeccccccCCCCCeEEEEecCC
Confidence 357889999999999999864 3 67888888 677543 356889888877765 44699999999999
Q ss_pred cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-ccccccCCCCcEEEEEcccccc---ccCCCeeEEEEcCCCCCCCC
Q 035593 89 GSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILVDLFSKGSLL 164 (269)
Q Consensus 89 G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~ 164 (269)
|...+...+|-.-.+|+.+|||..+++..++++. +.. .+.++++.++.||+..| ...++||+|+.|..++....
T Consensus 133 ggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa 210 (337)
T KOG1562|consen 133 GGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLAC--GYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPA 210 (337)
T ss_pred ccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhc--ccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchH
Confidence 9999999887224599999999999999999984 211 24689999999999998 34789999999987775444
Q ss_pred CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE-EcC--CCCce-EEEEe
Q 035593 165 SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL-SLG--NRKDD-SLIAL 239 (269)
Q Consensus 165 ~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~-~~~--~~~n~-v~~~~ 239 (269)
-.++...+|+.+.++||++|++++..-.-.. ....+....+.-+.+|+..-|.+ .++ +.+.. ..+|+
T Consensus 211 ~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl--------~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 211 CALFQKPYFGLVLDALKGDGVVCTQGECMWL--------HLDYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEecceehH--------HHHHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence 4678899999999999999999987633211 13355566666667787433333 333 33333 45666
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-15 Score=125.50 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=115.5
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccC
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLK 147 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~ 147 (269)
.+.......+|||||||+|.++..++++++.++|++||+++++++.|++...++.| ..|++++++|..++ ...
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKALVF 113 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhcccc
Confidence 33334448999999999999999999988889999999999999999999988775 47999999999998 334
Q ss_pred CCeeEEEEcCCCCC--CC------------CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHH
Q 035593 148 DGFSGILVDLFSKG--SL------------LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLK 213 (269)
Q Consensus 148 ~~yD~I~~d~~~~~--~~------------~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (269)
.+||+|+++.+--. .. ...+.-+++++.+.+.|||||.+.+-. + ...+.+++.
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~--r-----------~erl~ei~~ 180 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH--R-----------PERLAEIIE 180 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe--c-----------HHHHHHHHH
Confidence 57999999853221 11 012334799999999999999998865 3 224667888
Q ss_pred HHHH-HhcC-ceEEE-E-cCCCCceEEEEecCCC
Q 035593 214 AMHK-VFGK-KLYVL-S-LGNRKDDSLIALTGEL 243 (269)
Q Consensus 214 ~l~~-~F~~-~v~~~-~-~~~~~n~v~~~~~~~~ 243 (269)
.|++ -|.. .+..+ + .....|.+++......
T Consensus 181 ~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 181 LLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred HHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 8888 4542 33333 2 2334567777665543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-15 Score=121.20 Aligned_cols=107 Identities=20% Similarity=0.114 Sum_probs=88.5
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
+.+.++.+|||||||+|..+..+++..|+.+|+++|+++++++.|+++..... -++++++.+|+.++...++||+
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~~~~~~~fDl 115 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEEFGQEEKFDV 115 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhhCCCCCCccE
Confidence 34445899999999999999999987889999999999999999998875432 2349999999988744678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+++... ...++++.+++.|+|||.+++-...
T Consensus 116 V~~~~~~--------~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 116 VTSRAVA--------SLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred EEEcccc--------CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9986532 1368999999999999999987643
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=120.92 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=96.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
+..+|||+|||+|.++..++++.|..+|+++|+++.+++.|++++..+.+ ..++++.+|..+....++||+|+++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~~~~d~~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----ENVEVVQSDLFEALPDGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----cccccccccccccccccceeEEEEc
Confidence 67899999999999999999988888999999999999999999865532 2399999999887557899999998
Q ss_pred CCCCCCCCC-CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 157 LFSKGSLLS-ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 157 ~~~~~~~~~-~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
.+-...... .....++++.++++|+|||.+.+....... . ...+++.|+ .+..+.
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~------------~---~~~l~~~f~-~~~~~~ 161 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLG------------Y---ERLLKELFG-DVEVVA 161 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC------------H---HHHHHHHHS---EEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCC------------h---HHHHHHhcC-CEEEEE
Confidence 653322111 112468999999999999999775543211 1 122899997 565554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=121.29 Aligned_cols=116 Identities=20% Similarity=0.256 Sum_probs=93.9
Q ss_pred hcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCC
Q 035593 70 ATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKD 148 (269)
Q Consensus 70 ~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~ 148 (269)
...+...|+.+|||||||||-++..+++..+..+|+++|+++.|++.|+++..-.. ...++++++||.+. .+++
T Consensus 44 i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhhCCCCCC
Confidence 34434448999999999999999999998888999999999999999999975322 12399999999999 7889
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+||+|.+.-. ....-.-+..+++++|+|||||++++.-.+..
T Consensus 119 sFD~vt~~fg----lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 119 SFDAVTISFG----LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred ccCEEEeeeh----hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 9999987421 11112347999999999999999998877664
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-14 Score=108.38 Aligned_cols=106 Identities=19% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
.+.+..+|||+|||+|..+..+++..|+.+|+++|+++.+++.|++++.... .++++++.+|+... ...++||
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEeccccccChhhcCCCC
Confidence 3445679999999999999999998888999999999999999998764322 24689999998754 3346899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|+++.... ...++++.+++.|+|||.+++++.
T Consensus 91 ~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 91 RVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 999864211 135899999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=118.32 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=93.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.++.+|.|||||.|..+..|.+++|.+.|+++|-|++|++.|+++. +++++..+|.+++......|+|
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhcCCCCccchh
Confidence 356789999999999999999999999999999999999999998874 4689999999999988999999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+.++.-+ ..+.| .+.|..+...|.|||+|++++...
T Consensus 97 faNAvlq-WlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 97 FANAVLQ-WLPDH---PELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhh-hcccc---HHHHHHHHHhhCCCceEEEECCCc
Confidence 9876544 34444 589999999999999999998654
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=116.76 Aligned_cols=102 Identities=19% Similarity=0.112 Sum_probs=84.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|.++..++...++.+|++||+++++++.++++..... -++++++.+|+.++...++||+|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~~~~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAEDFQHEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhhccccCCccEEEeh
Confidence 4789999999999999999887788899999999999999988764222 23699999999887556799999987
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
... ...++++.+++.|+|||.+++...
T Consensus 117 ~~~--------~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 117 ALA--------SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred hhh--------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 521 135789999999999999998753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=108.96 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=85.2
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEEE
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~ 155 (269)
.+|||+|||+|.++..+++.. ..+++++|+||..+++|++++.... ...+++++++|+.+. ...++||+|+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhchhhccCceeEEEEE
Confidence 589999999999999999986 7899999999999999999986443 146899999999887 35789999999
Q ss_pred cCCCCCCCC--C--CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGSLL--S--ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~~~--~--~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|.+-..... . .-...+|++.+.+.|+|||++++.++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 865442211 1 11236899999999999999988763
|
... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=115.10 Aligned_cols=106 Identities=28% Similarity=0.344 Sum_probs=91.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-cccccc-c--cCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKA-S--LKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~-~--~~~~ 149 (269)
+..+++||+||.+.|..+.+++...| +.+++++|+||++++.|+++|...+ .+++++++. +|+.+. . ..+.
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~~gdal~~l~~~~~~~ 132 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLLGGDALDVLSRLLDGS 132 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEecCcHHHHHHhccCCC
Confidence 34799999999999999999999888 8899999999999999999986443 256799999 599887 3 4689
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE-Eec
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV-NVG 191 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~-~~~ 191 (269)
||+||+|+.... .++||+.+.+.|+|||++++ |+.
T Consensus 133 fDliFIDadK~~-------yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 133 FDLVFIDADKAD-------YPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred ccEEEEeCChhh-------CHHHHHHHHHHhCCCcEEEEeecc
Confidence 999999987654 57999999999999999998 443
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=115.21 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=86.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc-ccc---ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA-LKA---SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~-~~~---~~~~~yD~ 152 (269)
+..+|||||||+|..+..+++.+|+.+|++||+++.+++.|++++.... -++++++++|+ ..+ ..++.||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCccccce
Confidence 4678999999999999999988888899999999999999998874322 25799999999 544 24568999
Q ss_pred EEEcCCCCCCCC-C---CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLL-S---ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~-~---~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++....+.... . ......+++.+.+.|+|||++++...
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 998643332111 1 12357899999999999999998663
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-14 Score=120.99 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=84.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||||||+|.++..+++.+|+.+|+++|+++.|++.|++. +++++++|+.++...++||+|+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhCCCCCCceEEE
Confidence 4567899999999999999999988889999999999999999763 3678899998775557899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...-+ ..+ ....++++++++|||||.+++.+++
T Consensus 95 ~~~~l~-~~~---d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 95 SNAALQ-WVP---EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred Eehhhh-hCC---CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 864322 111 2368999999999999999987654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-14 Score=121.33 Aligned_cols=110 Identities=17% Similarity=0.281 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
..++.+|||+|||+|.++..++++. |+.+|+++|+++.|++.|+++..... ..+++++++|+.+. ..+++||+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~lp~~d~sfD~ 119 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDLPFPDNSFDA 119 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-TT-EEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHhcCCCCceeE
Confidence 4568899999999999999998875 47899999999999999999874322 24899999999998 66789999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|++... ..........+++++++|||||.+++--++.
T Consensus 120 v~~~fg----lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 120 VTCSFG----LRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp EEEES-----GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EEHHhh----HHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 997421 1111124689999999999999998766554
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=123.28 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=96.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
..+|||||||+|.++..+++++|..+|++||+|+.+++.|++++..+... ...+++++.+|+.......+||+|+++.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccCCCCCEEEEEECc
Confidence 46999999999999999999999999999999999999999987433100 0247899999987654456899999985
Q ss_pred CCCCCC-CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 158 FSKGSL-LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 158 ~~~~~~-~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
+-+... ...-...++|+.++++|+|||.+.+-.... ......|++.|++ +..+
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~---------------l~y~~~L~~~fg~-~~~v 360 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH---------------LDYFHKLKKIFGN-CTTI 360 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC---------------cCHHHHHHHHcCC-ceEE
Confidence 433211 111113579999999999999988865322 1234668889974 4443
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-14 Score=112.51 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=84.7
Q ss_pred CCCcEEEEcCcccHHHHHHH-HHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc--CCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLIL-DLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL--KDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~-~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~--~~~yD~I 153 (269)
...+|||+|||+|.++..++ +..|+.++++||+++++++.|++.+.... -++++++++|+.++.. .++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIEDLPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTCGCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhccccccCCCeeEE
Confidence 46799999999999999999 45678999999999999999999764221 2479999999999742 2799999
Q ss_pred EEcCCCCCCCCCCCC-cHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELE-DPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~-~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++.... .++. ...+++.+.+.|+++|++++....
T Consensus 78 ~~~~~l-----~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVL-----HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTG-----GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCch-----hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 987432 1222 247999999999999999987754
|
... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=113.57 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=88.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~ 152 (269)
...+|||||||+|.++..+++.+|+.++++||+++.+++.|+++..... -.+++++.+|+.++ ...+.+|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHhhCCCCceeE
Confidence 4568999999999999999999999999999999999999988764322 24799999999875 23458999
Q ss_pred EEEcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+++..++..-. ..+...++++.+++.|+|||.+.+...
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 999865543111 124457899999999999999988764
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-14 Score=102.41 Aligned_cols=93 Identities=17% Similarity=0.309 Sum_probs=75.0
Q ss_pred EEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcCCCC
Q 035593 82 GILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDLFSK 160 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~ 160 (269)
||+|||+|..+..++++ ++.+++++|+++++++.+++... ..++.++.+|+.++ ..++.||+|++...-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~--------~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK--------NEGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT--------TSTEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc--------ccCchheeehHHhCcccccccccccccccee
Confidence 89999999999999996 78999999999999999999875 24577999999998 6778999999753211
Q ss_pred CCCCCCC-CcHHHHHHHHhhccCCcEEEE
Q 035593 161 GSLLSEL-EDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 161 ~~~~~~l-~~~e~~~~~~~~L~pgG~l~~ 188 (269)
++ ....+++++++.|||||.+++
T Consensus 72 -----~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 -----HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----eccCHHHHHHHHHHHcCcCeEEeC
Confidence 22 246899999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-13 Score=117.85 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=86.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||+|||+|.++..++++.|+.+|+++|+|+.+++.|++++.... ...+++++.+|+.+....++||+|++|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~----~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG----LEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhhccCCCCccEEEEC
Confidence 4678999999999999999998889999999999999999999875332 135799999998765444589999998
Q ss_pred CCCCCC-----CCC------C--C--------CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 LFSKGS-----LLS------E--L--------EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~-----~~~------~--l--------~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+-... .++ + + ....+++.+.+.|+|||.+++.+..
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 532110 000 0 0 1246788889999999999998853
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=117.68 Aligned_cols=104 Identities=20% Similarity=0.307 Sum_probs=86.0
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.++.+|||||||+|.++..+++.+|+.+|+++|+++.+++.|++++ ++++++.+|+.++....+||+|
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhccCCCCCccEE
Confidence 345678999999999999999999888899999999999999999874 2578999999877555699999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++...-+ ... ....+++++.+.|+|||.+++.+.
T Consensus 98 ~~~~~l~-~~~---d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 98 FANASLQ-WLP---DHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEccChh-hCC---CHHHHHHHHHHhcCCCcEEEEECC
Confidence 9864322 111 246899999999999999999764
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-14 Score=118.31 Aligned_cols=103 Identities=28% Similarity=0.382 Sum_probs=85.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c-c--C
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S-L--K 147 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~-~--~ 147 (269)
..+++||+||+++|..+.++++..| +.+|+++|+||+..+.|+++|...++ ..+++++.+|+.++ . . .
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhHHHHHhccCC
Confidence 4789999999999999999998777 68999999999999999999854332 36899999999986 1 1 3
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++||+||+|+.... ..++|+.+.+.|+|||++++.
T Consensus 120 ~~fD~VFiDa~K~~-------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 120 GQFDFVFIDADKRN-------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TSEEEEEEESTGGG-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEcccccc-------hhhHHHHHhhhccCCeEEEEc
Confidence 58999999986432 468999999999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=110.96 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=84.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+..+|||||||+|.++..+++.+|+.+|+++|+++.+++.|++++.... -.+++++.+|+... ..++||+|
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i~~~~~d~~~~-~~~~~D~v 101 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-----CGNIDIIPGEAPIE-LPGKADAI 101 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCCeEEEecCchhh-cCcCCCEE
Confidence 3457889999999999999999998888999999999999999998764322 24689999997532 24589999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+++.... ...++++.+.+.|+|||.++++...
T Consensus 102 ~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 102 FIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EECCCcc-------CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 9864211 1367999999999999999987643
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=114.40 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+.++.+|||||||+|.++..++++. +..+|+++|++++|++.|+++...... ...++++++++|+.++ ..+++||+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence 4467899999999999999988865 467999999999999999877532100 0135799999999887 55678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|++...-+ .. .....++++++++|||||.+++-.+..
T Consensus 149 V~~~~~l~-~~---~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 149 ITMGYGLR-NV---VDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred EEEecccc-cC---CCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 98743211 11 124689999999999999998876654
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=113.60 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=97.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
...+|||+|||.|.++..+++..|..+++.+|+|...++.||++...+. -.+..++..|..+-... +||+|+++
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~~v~~-kfd~IisN 231 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYEPVEG-KFDLIISN 231 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccccccc-cccEEEeC
Confidence 3559999999999999999999999999999999999999999986553 12337788887665333 99999998
Q ss_pred CCCCCCCCC-CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 157 LFSKGSLLS-ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 157 ~~~~~~~~~-~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
.+-+....- +-...++++.++++|++||.|.+-..+.. .....|++.|+ .+..+.
T Consensus 232 PPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l---------------~y~~~L~~~Fg-~v~~la 287 (300)
T COG2813 232 PPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL---------------PYEKKLKELFG-NVEVLA 287 (300)
T ss_pred CCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC---------------ChHHHHHHhcC-CEEEEE
Confidence 665533211 22235999999999999997766554321 23456999997 566654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=114.32 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=88.2
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S 145 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~ 145 (269)
.++....+.+..+|||+|||+|..+..+++.. ++.+|+++|+++.+++.|++++.... .++++++.+|+.++ .
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAMELPF 110 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhcCCC
Confidence 34333345567899999999999999999875 57899999999999999998864221 35799999999887 4
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..++||+|++...-. ..+ ...++++++.+.|+|||.+++-..
T Consensus 111 ~~~~fD~V~~~~~l~-~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 111 DDNSFDYVTIGFGLR-NVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCccEEEEecccc-cCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 567899999753211 111 235899999999999999987543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-13 Score=117.60 Aligned_cols=150 Identities=16% Similarity=0.245 Sum_probs=100.5
Q ss_pred CCCcEEEEcCcccHHH--HHHHHHCCCceEEEEECChHHHHHHHHhcCc-cccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAA--RLILDLYPEAVIHGWELDPSVIKVAREFFAL-EKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~--~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
++++|++||||.|.++ ..+++++|+.+++++|+|+++++.||+.+.. .+ -..+++++.+|+.+. ...++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcCE
Confidence 7899999999977333 3344567899999999999999999999842 22 146899999999987 34578999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE-EcCCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL-SLGNR 231 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~-~~~~~ 231 (269)
|++++.-. . ..-...+.++.++++|+|||++++-.....+ .-+...+....-+-|. ....+ +.++-
T Consensus 199 VF~~ALi~--~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r---------~~LYp~v~~~~~~gf~-~~~~~~P~~~v 265 (296)
T PLN03075 199 VFLAALVG--M-DKEEKVKVIEHLGKHMAPGALLMLRSAHGAR---------AFLYPVVDPCDLRGFE-VLSVFHPTDEV 265 (296)
T ss_pred EEEecccc--c-ccccHHHHHHHHHHhcCCCcEEEEecccchH---------hhcCCCCChhhCCCeE-EEEEECCCCCc
Confidence 99984211 1 0012479999999999999999997632211 1111111111222563 23333 33444
Q ss_pred CceEEEEecCCC
Q 035593 232 KDDSLIALTGEL 243 (269)
Q Consensus 232 ~n~v~~~~~~~~ 243 (269)
.|.++++-+...
T Consensus 266 ~Nsvi~~r~~~~ 277 (296)
T PLN03075 266 INSVIIARKPGG 277 (296)
T ss_pred eeeEEEEEeecC
Confidence 688888887654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=105.71 Aligned_cols=118 Identities=19% Similarity=0.105 Sum_probs=94.4
Q ss_pred chHHHHHh-cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 63 NTYFDAFA-TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 63 ~~y~~~~~-~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
-.=.+.+. +...+.|...++|||||+|+++.+++...|..+|+++|-|++.++..+++...-+ -++++++.+|+
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~A 93 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDA 93 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccc
Confidence 33445553 3335668899999999999999999987899999999999999999987753111 36899999999
Q ss_pred ccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 142 LKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 142 ~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-+. ....++|.||+.... ...+.++.+..+|+|||.+++|....
T Consensus 94 p~~L~~~~~~daiFIGGg~--------~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 94 PEALPDLPSPDAIFIGGGG--------NIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred hHhhcCCCCCCEEEECCCC--------CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 988 333389999986431 14789999999999999999999653
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=113.05 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=83.8
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL 146 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~ 146 (269)
|.....+.+..+|||||||+|.++..+++..+ +.+|+++|+++++++.|++++.... -.+++++.+|+... ..
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCc
Confidence 33333456789999999999999999888653 5799999999999999999875322 24799999999875 45
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+||+|+++.... +..+.+.+.|+|||.+++...
T Consensus 143 ~~~fD~I~~~~~~~----------~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 143 NAPYDRIYVTAAGP----------DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcCEEEECCCcc----------cchHHHHHhhCCCcEEEEEEc
Confidence 57899999875321 223466778999999998764
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-13 Score=119.88 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=85.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.++.+|||||||+|.++..+++.+ +.+|++||+++.+++.|++...... ..++++++.+|+.+. ...++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCcccCCCCCCCccEEE
Confidence 457899999999999999999876 7899999999999999998764322 135799999999887 5567999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+..... .. .....+++++++.|||||.+++..+
T Consensus 192 s~~~~~-h~---~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 192 SMESGE-HM---PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ECCchh-cc---CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 742111 11 1246899999999999999988654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-13 Score=111.27 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=81.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD 151 (269)
.+.+..+|||||||+|..+..+++..+ ..+|+++|+++++++.|++++.... ...+++++.+|+.+. ....+||
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccCCccCCCcc
Confidence 345678999999999999999988764 5699999999999999998874322 124699999999875 4456899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|+++.... .+.+.+.+.|+|||++++...
T Consensus 145 ~Ii~~~~~~----------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 145 AIIVTAAAS----------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEEEccCcc----------hhhHHHHHhcCcCcEEEEEEc
Confidence 999875321 233567889999999988763
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-13 Score=113.18 Aligned_cols=109 Identities=20% Similarity=0.279 Sum_probs=84.6
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S 145 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~ 145 (269)
.|.....+.+..+|||||||+|..+..+++..+ +.+|++||+++++++.|++++.... -.+++++.+|+.+. .
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcccCCc
Confidence 343333456789999999999999999998754 5689999999999999999875332 24799999999876 4
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...+||+|+++.... ...+.+.+.|+|||++++.+.
T Consensus 143 ~~~~fD~Ii~~~~~~----------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 143 PLAPYDRIYVTAAGP----------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ccCCCCEEEEcCCcc----------cccHHHHHhcCcCcEEEEEEc
Confidence 456899999875321 233567889999999998764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=114.81 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=100.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.|++++.... ...+++++++|+.+....++||+|+++.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~----l~~~i~~~~~D~~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG----LEDRVTLIESDLFAALPGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCcEEEEECchhhhCCCCCccEEEECC
Confidence 368999999999999999998899999999999999999999875332 1357999999987654445899999985
Q ss_pred CCCCC-----C------CCC--C--------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 158 FSKGS-----L------LSE--L--------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 158 ~~~~~-----~------~~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
+-... . .+. + ....+++.+.+.|+|||.+++.+... . . .+.
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-----------~---~----~~~ 271 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-----------R---V----HLE 271 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-----------H---H----HHH
Confidence 32110 0 010 0 12467888999999999999987432 1 1 133
Q ss_pred HHhcC-ceEEEEcCCCCceEEEEecC
Q 035593 217 KVFGK-KLYVLSLGNRKDDSLIALTG 241 (269)
Q Consensus 217 ~~F~~-~v~~~~~~~~~n~v~~~~~~ 241 (269)
+.|++ .+.|.......-.++++...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (307)
T PRK11805 272 EAYPDVPFTWLEFENGGDGVFLLTRE 297 (307)
T ss_pred HHHhhCCCEEEEecCCCceEEEEEHH
Confidence 33432 24566665656666666543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=111.40 Aligned_cols=105 Identities=20% Similarity=0.304 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||+|||+|..+..++++ +.+|+++|+++.+++.|++...... -.+++++.+|..++...++||+|+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhhCCcCCCcCEEE
Confidence 346789999999999999999983 6799999999999999998764322 235889999988774456799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+...-+ ...+ -....+++.+++.|+|||.+++
T Consensus 101 ~~~~~~-~~~~-~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLM-FLEA-KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred Eecchh-hCCH-HHHHHHHHHHHHHcCCCcEEEE
Confidence 753211 1111 1236899999999999998544
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-13 Score=116.99 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=85.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c------c
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S------L 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~------~ 146 (269)
+.++++||+||||+|..+.++++..+ +.+|+++|+|+++++.|++++...+. ..+++++.+|+.+. . .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHHhCCC
Confidence 34689999999999999999888765 67999999999999999999854331 36899999999886 1 1
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
.++||+||+|+.... ..++++.+.+.|+|||++++
T Consensus 142 ~~~fD~VfiDa~k~~-------y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFVDADKPN-------YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCEEEECCCHHH-------HHHHHHHHHHhcCCCeEEEE
Confidence 468999999976432 35899999999999999987
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=113.56 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=84.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.+..+|||+|||+|.++..+++ -+++|+++|+++++++.|+.+...+. -.+.+.+....+. ...++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr--~Ga~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLAR--LGASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHH--CCCeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEEE
Confidence 4788999999999999999998 47999999999999999999875432 2355777777776 4458999999
Q ss_pred EcCCCCCCCCCCCCc-HHHHHHHHhhccCCcEEEEEecCCC
Q 035593 155 VDLFSKGSLLSELED-PNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~-~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+- .+..|... ..|++.|.+.+||||++++...+..
T Consensus 130 cm-----EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 130 CM-----EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred Eh-----hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 63 23334333 5799999999999999999887654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=120.02 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=84.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
+..+|||||||+|.++..+++ ++.+|++||+++++++.|++++.... ...+++++++|+.++ ...++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHHhhhccCCCCEEEE
Confidence 356899999999999998886 57899999999999999998864321 124799999999887 45678999996
Q ss_pred cCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-. +..|+ ...++++++++.|||||.+++...+.
T Consensus 205 ~~-----vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 205 LE-----VIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hh-----HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 32 11222 23689999999999999999987654
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=115.39 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=83.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
...+|||+|||+|.++..++++.|+.+|+++|+|+.+++.|++++..+. -..+++.+|+... ..++||+|+++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~------l~~~~~~~D~~~~-~~~~fDlIvsN 268 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG------LEGEVFASNVFSD-IKGRFDMIISN 268 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCEEEEcccccc-cCCCccEEEEC
Confidence 3568999999999999999998898999999999999999999875432 2357778887654 35689999997
Q ss_pred CCCCCCCCC-CCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLS-ELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~-~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+-+..... .-...++++.+.++|+|||.+.+..
T Consensus 269 PPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 643322111 1123689999999999999886644
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-13 Score=103.07 Aligned_cols=94 Identities=20% Similarity=0.346 Sum_probs=72.7
Q ss_pred EEEEcCcccHHHHHHHHHC---CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 81 IGILGFGAGSAARLILDLY---PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~---p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
|||+|||+|..++.+.+.+ |..++++||+|+++++.|++++... ..+++++++|+.++ ...++||+|++-
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~------~~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED------GPKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT------TTTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc------CCceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999886 3589999999999999999987432 34799999999988 567799999982
Q ss_pred CCCCCCCCCCCC---cHHHHHHHHhhccCCc
Q 035593 157 LFSKGSLLSELE---DPNTWEKLRQCLRKGG 184 (269)
Q Consensus 157 ~~~~~~~~~~l~---~~e~~~~~~~~L~pgG 184 (269)
.. ...++. ...+++++.++|+|||
T Consensus 75 ~~----~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GL----SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TT----GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CC----ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 11 111222 3689999999999998
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=113.98 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=89.6
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||+|..+..+++.+ +++|+++|+++.+++.|++++.. .++++++.+|+...
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILKK 111 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcccC
Confidence 44555444456678899999999999999988754 67999999999999999998652 25799999998876
Q ss_pred -ccCCCeeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 145 -SLKDGFSGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 -~~~~~yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+++||+|++ ++..+ .+. -....+++++++.|||||.+++..+
T Consensus 112 ~~~~~~FD~V~s~~~l~h--~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILH--LSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCCeEEEEEhhhHHh--CCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 45678999997 32221 110 0246899999999999999998764
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-13 Score=114.79 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=104.3
Q ss_pred EEecCCCceeeeeecCCc--ccchHH---HHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHH
Q 035593 43 LLLDGPGNIHSISYLFRS--LTNTYF---DAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVA 117 (269)
Q Consensus 43 L~~~~~~~~qs~~~~~~~--l~~~y~---~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a 117 (269)
|++|.+..+-++...+.. ++-.-. +.+.....|.|..+|||||||.|.++.++++++ +++|++|.+|++..+.+
T Consensus 33 l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~ 111 (283)
T COG2230 33 LFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYA 111 (283)
T ss_pred HhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHH
Confidence 666766555555554432 222222 222344568899999999999999999999988 89999999999999999
Q ss_pred HHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 118 REFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 118 ~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
++.+...+ ...+++++.+|-+++... ||.|++ .++.+.+. -.-.+||+.+++.|+|||.+++......
T Consensus 112 ~~r~~~~g----l~~~v~v~l~d~rd~~e~--fDrIvSvgmfEhvg~---~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 112 EKRIAARG----LEDNVEVRLQDYRDFEEP--FDRIVSVGMFEHVGK---ENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred HHHHHHcC----CCcccEEEeccccccccc--cceeeehhhHHHhCc---ccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 99774332 135899999999988433 999995 33333211 1247999999999999999998877653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-13 Score=115.95 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHH--CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDL--YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~--~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+..+|||||||+|..+..+++. .|+.+++++|+++.|++.|++++.... ...+++++.+|+.+... ..+|+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~~~~~~-~~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRDIAI-ENASMV 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCChhhCCC-CCCCEE
Confidence 46789999999999999888873 478999999999999999999874321 13479999999887633 358998
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...-+ ...+ -....+++++++.|+|||.+++.-
T Consensus 130 v~~~~l~-~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 130 VLNFTLQ-FLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ehhhHHH-hCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8643211 1111 113579999999999999998854
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-13 Score=115.79 Aligned_cols=114 Identities=20% Similarity=0.245 Sum_probs=80.6
Q ss_pred hcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCC
Q 035593 70 ATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDG 149 (269)
Q Consensus 70 ~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~ 149 (269)
.....+.|..+|||||||.|.++.++++++ +++|++|.+|++..+.|++.....+ ...++++..+|.+++.. +
T Consensus 55 ~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~~~~~~--~ 127 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDYRDLPG--K 127 (273)
T ss_dssp HTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-GGG-----S
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeeccccCC--C
Confidence 344467789999999999999999999987 8999999999999999998874332 14689999999887633 9
Q ss_pred eeEEEEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 150 FSGILVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 150 yD~I~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
||.|++- ++.+ +. .-....||+.+.+.|+|||.+++..+..
T Consensus 128 fD~IvSi~~~Eh--vg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 128 FDRIVSIEMFEH--VG-RKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp -SEEEEESEGGG--TC-GGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CCEEEEEechhh--cC-hhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999853 2222 11 1123689999999999999999876644
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-13 Score=116.16 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=87.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---c--
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S---L-- 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~---~-- 146 (269)
+.++++||+||+|+|..+.++++..| +.+|+++|++++..+.|++++...+ ..++++++.+|+.+. . .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhccc
Confidence 34689999999999999999998765 6789999999999999999985433 246899999999886 1 1
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.++||+||+|+.... ..++|+.+.+.|+|||+++++
T Consensus 192 ~~~FD~VFIDa~K~~-------Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 192 GSSYDFAFVDADKRM-------YQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCCEEEECCCHHH-------HHHHHHHHHHhcCCCcEEEEe
Confidence 368999999986532 478999999999999999984
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=107.75 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=84.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
.+.+..+|||+|||+|.++..+++..++.+|+++|+||++++.|++++.... -.+++++.+|+.+. .....+|
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeEEEECchHHHHhhCCCCCC
Confidence 3456789999999999999999887788899999999999999998864221 24699999998763 2234578
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.|+++... ...++++.+.+.|+|||.+++....
T Consensus 112 ~v~~~~~~--------~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 112 RVCIEGGR--------PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEEEECCc--------CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 88876321 1368999999999999999998754
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-12 Score=108.61 Aligned_cols=121 Identities=23% Similarity=0.338 Sum_probs=100.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.+.|..+|++.|.|+|.++.+|++. .|..+|+.+|+.++.++.|++++..-. ..+++++..+|..+....+.||+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~d~v~~~~~Dv~~~~~~~~vDa 166 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LGDRVTLKLGDVREGIDEEDVDA 166 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cccceEEEeccccccccccccCE
Confidence 3557899999999999999999974 467899999999999999999985322 13569999999999855559999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-h
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-F 219 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F 219 (269)
|++|+.+++ ++++.+++.|+|||.+++.+ ++. .+...++..|++. |
T Consensus 167 v~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~--P~v----------eQv~kt~~~l~~~g~ 213 (256)
T COG2519 167 VFLDLPDPW---------NVLEHVSDALKPGGVVVVYS--PTV----------EQVEKTVEALRERGF 213 (256)
T ss_pred EEEcCCChH---------HHHHHHHHHhCCCcEEEEEc--CCH----------HHHHHHHHHHHhcCc
Confidence 999998764 79999999999999999977 432 2567778888887 5
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.4e-12 Score=106.50 Aligned_cols=138 Identities=17% Similarity=0.297 Sum_probs=94.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
.+.+..+|||+|||+|.++..+++..+..+|+++|+++.|++.+++.... .+++.++.+|+... ...++
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhcccc
Confidence 45678899999999999999999977767999999999999977766431 24689999998752 22356
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEc
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSL 228 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~ 228 (269)
||+|++|...+. ....+++.+++.|||||.+++.+.....+ ............++.++++ |. .+.+...
T Consensus 142 ~D~i~~d~~~p~------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d---~~~~~~~~~~~~~~~l~~aGF~-~i~~~~l 211 (226)
T PRK04266 142 VDVIYQDVAQPN------QAEIAIDNAEFFLKDGGYLLLAIKARSID---VTKDPKEIFKEEIRKLEEGGFE-ILEVVDL 211 (226)
T ss_pred CCEEEECCCChh------HHHHHHHHHHHhcCCCcEEEEEEeccccc---CcCCHHHHHHHHHHHHHHcCCe-EEEEEcC
Confidence 999998754321 12356899999999999999853311100 0001122334455666665 63 4555444
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=102.08 Aligned_cols=108 Identities=21% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||+|||+|.++..+++..+ +|+++|++|++++.+++++... ..+++++.+|..+.. .++||+|++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~-~~~fD~Vi~ 88 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN------NVGLDVVMTDLFKGV-RGKFDVILF 88 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc------CCceEEEEccccccc-CCcccEEEE
Confidence 3567899999999999999998543 8999999999999999987533 236888999987653 348999998
Q ss_pred cCCCCCCCC-----C------------CCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLL-----S------------ELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~-----~------------~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+.+-..... . .....++++.+.+.|+|||.+++....
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 753221100 0 001357899999999999999887644
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=108.20 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||+|||+|.++.++++ .+.+|+++|+++.+++.+++...... -++++...|.......++||+|+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~--~g~~V~~iD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~fD~I~ 99 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSL--AGYDVRAWDHNPASIASVLDMKAREN------LPLRTDAYDINAAALNEDYDFIF 99 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHHhC------CCceeEeccchhccccCCCCEEE
Confidence 34578999999999999999997 36799999999999999988764221 23677777876553346899998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+...-+ .... -....+++.+++.|+|||.+++..
T Consensus 100 ~~~~~~-~~~~-~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 100 STVVFM-FLQA-GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred Eecccc-cCCH-HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 743211 1111 123589999999999999855543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-12 Score=105.63 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=84.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCe
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~y 150 (269)
.+.+..+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++.... ...+++++.+|+.++ ...++|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeEEEEechhhhHhhcCCCC
Confidence 45578899999999999999988754 46799999999999999998864321 025789999999875 334689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|+++.... ...++++.+.+.|+|||.+++...
T Consensus 113 D~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 113 DRIFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CEEEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee
Confidence 9999854211 136899999999999999998664
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=113.15 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.++.+|||+|||+|.++..+++. +.+|+++|+++++++.|+++..... ..++++++++|+.+. ...++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHHHhhhcCCCCCEE
Confidence 35789999999999999999884 6799999999999999998864322 135799999999876 346789999
Q ss_pred EEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++...- .++ ....+++.+.+.|||||++++..++.
T Consensus 117 ~~~~vl-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 117 LFHAVL-----EWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred EehhHH-----HhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 974321 111 13589999999999999998766543
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-12 Score=109.01 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+..+|||||||+|..+..+++++ |+.+++++|+++.|++.|++++.... ...+++++++|+.++.. +.+|+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~~~~-~~~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHVEI-KNASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCCC-CCCCEE
Confidence 367799999999999999998864 68999999999999999999864211 13579999999988733 358988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...-+ ...+ -....++++++++|+|||.+++.-
T Consensus 127 ~~~~~l~-~~~~-~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 127 ILNFTLQ-FLPP-EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred eeecchh-hCCH-HHHHHHHHHHHHhcCCCeEEEEee
Confidence 7643211 1110 013589999999999999998864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=109.18 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=113.2
Q ss_pred ccchHHHHHhcCCCC--CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccccc-CCCCcEEEE
Q 035593 61 LTNTYFDAFATLPPI--LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEK-SYPDRLFVY 137 (269)
Q Consensus 61 l~~~y~~~~~~~~~l--~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~-~~~~rv~~~ 137 (269)
...++.+...-.... ....+|||.+.|-|..+...+++ ...+|..||.||.++++|+- ++|.. ....+++++
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~l----NPwSr~l~~~~i~ii 190 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKL----NPWSRELFEIAIKII 190 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeecc----CCCCccccccccEEe
Confidence 345566666433333 34889999999999999999883 23499999999999999864 34431 234579999
Q ss_pred Ecccccc---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHH
Q 035593 138 VGNALKA---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKA 214 (269)
Q Consensus 138 ~~D~~~~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (269)
.||+.++ ..++.||+|+.|.+-- +...+|++++||+++++.|+|||.+.-.+..+...+. +....+.+.+.
T Consensus 191 lGD~~e~V~~~~D~sfDaIiHDPPRf-S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr-----G~d~~~gVa~R 264 (287)
T COG2521 191 LGDAYEVVKDFDDESFDAIIHDPPRF-SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR-----GLDLPKGVAER 264 (287)
T ss_pred cccHHHHHhcCCccccceEeeCCCcc-chhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc-----cCChhHHHHHH
Confidence 9999998 5677899999997543 3445899999999999999999999888877653222 23356788889
Q ss_pred HHHH-hc
Q 035593 215 MHKV-FG 220 (269)
Q Consensus 215 l~~~-F~ 220 (269)
|+++ |.
T Consensus 265 Lr~vGF~ 271 (287)
T COG2521 265 LRRVGFE 271 (287)
T ss_pred HHhcCce
Confidence 9988 73
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=108.93 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=82.8
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCC
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLF 158 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~ 158 (269)
++|||||||+|..+..+++.+++.+++++|+++++++.|++++.... ..++++++.+|.......++||+|++...
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAKDPFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEecccccCCCCCCCCEeehHHH
Confidence 47999999999999999998888999999999999999999874322 14589999999865533468999986321
Q ss_pred CCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 159 SKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 159 ~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
-. ... ....+++.+++.|+|||.+++..+
T Consensus 77 l~-~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IH-HIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HH-hCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 11 111 146899999999999999988654
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=105.40 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=83.7
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCC
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDG 149 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~ 149 (269)
.+..+.|..+||+||||+|..+..|++.. .+|+.||++++..+.|++++..-+ -.++.++++|+..- ....+
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg-----~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG-----YENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC-----CCceEEEECCcccCCCCCCC
Confidence 44457789999999999999999999853 399999999999999999875322 34699999999986 66689
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||.|++.+..+ ..| +.+.+.|++||++++-+.
T Consensus 139 yD~I~Vtaaa~-~vP---------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAP-EVP---------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccC-CCC---------HHHHHhcccCCEEEEEEc
Confidence 99999976543 222 234557999999999876
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-13 Score=102.51 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=60.0
Q ss_pred EEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEEEcCC
Q 035593 82 GILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILVDLF 158 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~~ 158 (269)
||||||+|.++..+++++|..+++++|+||.+++.|++++.... ......+..+..+. ...++||+|++...
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhhh
Confidence 79999999999999999999999999999999988888764221 12233333333332 33469999997422
Q ss_pred CCCCCCCCC-CcHHHHHHHHhhccCCcEE
Q 035593 159 SKGSLLSEL-EDPNTWEKLRQCLRKGGRI 186 (269)
Q Consensus 159 ~~~~~~~~l-~~~e~~~~~~~~L~pgG~l 186 (269)
..++ ...++++.+++.|+|||+|
T Consensus 76 -----l~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 -----LHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -----TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred -----HhhhhhHHHHHHHHHHHcCCCCCC
Confidence 2222 3469999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=103.88 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=91.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
+.+..+|||||||+|.++..+++..+ ..+|++||+++ + .. .++++++++|+.+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~~--------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------DP--------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------cC--------CCCcEEEecCCCChHHHHHHHHH
Confidence 45778999999999999999998764 57999999998 1 01 24589999999874
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCC-------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 145 SLKDGFSGILVDLFSKGSLLSEL-------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l-------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
...++||+|++|......-.+.. ....+++.+.+.|+|||.+++-++... .+..++..+++
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~------------~~~~~l~~l~~ 180 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE------------GFDEYLREIRS 180 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc------------CHHHHHHHHHh
Confidence 23568999999864321110000 024689999999999999999877542 25677888999
Q ss_pred HhcCceEEEE
Q 035593 218 VFGKKLYVLS 227 (269)
Q Consensus 218 ~F~~~v~~~~ 227 (269)
.|. .+.+++
T Consensus 181 ~f~-~v~~~K 189 (209)
T PRK11188 181 LFT-KVKVRK 189 (209)
T ss_pred Cce-EEEEEC
Confidence 995 676664
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=106.83 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=84.5
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCC
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLF 158 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~ 158 (269)
.+|||+|||+|.++..++..+|+.+|+++|+++++++.|+++..... ...+++++.+|..+.....+||+|+++.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~----~~~~v~~~~~d~~~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ----LEHRVEFIQSNLFEPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhccCcCCCccEEEECCC
Confidence 68999999999999999998888999999999999999999874322 12469999999876533348999999743
Q ss_pred CCCCC-----------CCC--C--------CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 159 SKGSL-----------LSE--L--------EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 159 ~~~~~-----------~~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
-.... .++ + ....+++.+.+.|+|||++++.+..
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 22110 000 0 1246788888999999999998854
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=111.88 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=86.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---c---C
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S---L---K 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~---~---~ 147 (269)
++++||+||+++|..+.++++..| +.+|+++|++++..+.|+++|...+ ..++++++.+|+.+. . . .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeccHHHHHHHHHhccccC
Confidence 589999999999999999998765 7899999999999999999985433 146899999999886 1 1 3
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++||+||+|+.... ..++|+.+.+.|+|||++++.
T Consensus 155 ~~fD~iFiDadK~~-------Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKDN-------YINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHHH-------hHHHHHHHHHhcCCCeEEEEc
Confidence 68999999986432 468999999999999999884
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-12 Score=108.86 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=80.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||||||+|.++..+.+ .+.+++++|+++.+++.|+++.. ...++++|+... ...++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 468999999999999998876 46899999999999999998752 246788998877 45668999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...-.. . -...+++.++.+.|+|||.+++..+..
T Consensus 110 ~~~l~~-~---~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 110 NLAVQW-C---GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred Cchhhh-c---CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 543211 1 124689999999999999999987654
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-11 Score=110.57 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.+..+|||||||+|.++..+++..|+.+|+++|+|+++++.|+++.... ..+++++.+|..+. ...++||+|
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEcchhccccccCCCccEE
Confidence 3567999999999999999998788999999999999999999987532 24799999998764 234589999
Q ss_pred EEcCCCCCCC----C-------CC--C--------CcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSL----L-------SE--L--------EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~----~-------~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+++.+-.... . |+ + ....+++.+.++|+|||.+++-+.
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9986421110 0 00 1 013566666789999999987664
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=112.59 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=89.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
...+||||||+|..+..+++..|+..++|+|+++.+++.|.+.....+ -.++.++.+|++.+ ...+.+|.|+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 458999999999999999999999999999999999999988864332 24799999999875 4567899999
Q ss_pred EcCCCCCCCCC--CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLS--ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~--~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+....++.-.. .+...+|++.+++.|+|||.+.+..-
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 87555432112 24457999999999999999998774
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=107.40 Aligned_cols=104 Identities=19% Similarity=0.306 Sum_probs=85.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.+.+|||||||+|.++..+++..+..+++++|+++.+++.+++.+. ++++++.+|+.+. ...++||+|++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchhhCCCCCCceeEEEE
Confidence 3578999999999999999998888899999999999999998764 3688999999887 45678999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...-+. . -....+++.+++.|+|||.+++..+..
T Consensus 105 ~~~l~~-~---~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 105 NLALQW-C---DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhhhhh-c---cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 643221 1 124689999999999999999887544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-11 Score=103.43 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=85.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||+|||+|.++..+++..|..+++++|+++.+++.|++++... ...+++++.+|+......++||+|+
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~-----~~~~i~~~~~d~~~~~~~~~fD~Iv 180 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG-----LGARVEFLQGDWFEPLPGGRFDLIV 180 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC-----CCCcEEEEEccccCcCCCCceeEEE
Confidence 34678999999999999999999888899999999999999999987511 1357999999986543357899999
Q ss_pred EcCCCCCC-----CCCC---------CC--------cHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGS-----LLSE---------LE--------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~-----~~~~---------l~--------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++.+-... ..+. +. ...+++.+.+.|+|||.+++...
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 87432110 0000 11 14677888899999999999763
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=105.43 Aligned_cols=106 Identities=17% Similarity=0.189 Sum_probs=81.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~~~yD~I~ 154 (269)
+.+|||+|||+|.++..+++..++.+|+++|+|+.+++.|++++... +++++.+|..+. . ..++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~--------~~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA--------GGTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCEEEEeechhhcchhcCCCEeEEE
Confidence 45899999999999999998888889999999999999999987532 257899998765 2 235799999
Q ss_pred EcCCCCCC-----CCC----C-----CC--------cHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGS-----LLS----E-----LE--------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~-----~~~----~-----l~--------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|.+-... .++ + +. ..++++.+.+.|+|||.+++-..
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 98642210 000 0 10 24777888899999999998764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=103.78 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=85.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+.+|||+|||+|..+..+++.+|+.+++++|+++.+++.|++++.... -++++++.+|+.+....++||+|+++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG-----LDNVTFLQSDWFEPLPGGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhccCcCCceeEEEEC
Confidence 3568999999999999999998888999999999999999998875332 23699999999876446789999987
Q ss_pred CCCCCC-----CCCCCC-----------------cHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGS-----LLSELE-----------------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~-----~~~~l~-----------------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+-... ...... ...+++.+.+.|+|||.+++...
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 532210 000000 13678999999999999998763
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=115.86 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=84.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.++.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|+++.... ..+++++.+|+... ...++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCCCCCCCEEEE
Confidence 3457799999999999999998865 789999999999999999875311 35799999998876 345789999
Q ss_pred EEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++... ..|+ ....+++++++.|+|||.+++..+.
T Consensus 337 ~s~~~-----l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 337 YSRDT-----ILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred EECCc-----ccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 97421 1111 2468999999999999999987653
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=104.19 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=87.0
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL 146 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~ 146 (269)
+.....+.++.+|||+|||+|.++..+++++ |..+++++|+++.+++.|+++.... .++++++.+|+... ..
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEecccccCCCC
Confidence 3333345678899999999999999999877 6789999999999999999873211 35799999998876 45
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.++||+|++...-.. . -....+++.+.+.|+|||.+++..
T Consensus 85 ~~~~D~v~~~~~~~~-~---~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRVLQH-L---EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCceEEEEechhhc-c---CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 578999997532110 1 124689999999999999998754
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=104.26 Aligned_cols=130 Identities=20% Similarity=0.306 Sum_probs=97.4
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S 145 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~ 145 (269)
....+.|..+||+.|.|+|+++.+|++. .|..+|...|+.++.++.|+++|.... ...++++.+.|...- .
T Consensus 34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g----l~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG----LDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----CCTTEEEEES-GGCG--STT
T ss_pred HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----CCCCceeEecceeccccccc
Confidence 3345779999999999999999999975 478899999999999999999985432 145899999998753 2
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhc-cCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCce
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL-RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKL 223 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L-~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v 223 (269)
....+|+||+|+.+++ +.+..+.++| ++||++++.+ ++- .+...++..|++. |. .+
T Consensus 110 ~~~~~DavfLDlp~Pw---------~~i~~~~~~L~~~gG~i~~fs--P~i----------eQv~~~~~~L~~~gf~-~i 167 (247)
T PF08704_consen 110 LESDFDAVFLDLPDPW---------EAIPHAKRALKKPGGRICCFS--PCI----------EQVQKTVEALREHGFT-DI 167 (247)
T ss_dssp -TTSEEEEEEESSSGG---------GGHHHHHHHE-EEEEEEEEEE--SSH----------HHHHHHHHHHHHTTEE-EE
T ss_pred ccCcccEEEEeCCCHH---------HHHHHHHHHHhcCCceEEEEC--CCH----------HHHHHHHHHHHHCCCe-ee
Confidence 2468999999998764 6888999999 8999999976 442 3567778888874 64 44
Q ss_pred EEE
Q 035593 224 YVL 226 (269)
Q Consensus 224 ~~~ 226 (269)
..+
T Consensus 168 ~~~ 170 (247)
T PF08704_consen 168 ETV 170 (247)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=108.01 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=82.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+.+..+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++.... -++++++.+|+.+. ..++.||+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCceeE
Confidence 4468899999999999888777654 45689999999999999998763221 24789999998876 44568999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+++..-+. .+ .....++++.+.|+|||.+++.-
T Consensus 150 Vi~~~v~~~-~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINL-SP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccC-CC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 997643211 11 23689999999999999998854
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=107.56 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+..+|||+|||+|.++..+++ .+..+|+++|+||.+++.|++++..+. ...+++++.+|... ...++||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~----~~~~~~~~~~~~~~-~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQ----VSDRLQVKLIYLEQ-PIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcC----CCcceEEEeccccc-ccCCCceEEEE
Confidence 4678999999999999988886 345699999999999999999875443 13467777776322 23568999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+.... . ..+++..+.+.|+|||.+++....
T Consensus 232 n~~~~-----~--l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILAE-----V--IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCHH-----H--HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 65321 1 257899999999999999987654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-12 Score=106.86 Aligned_cols=109 Identities=25% Similarity=0.303 Sum_probs=80.6
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S 145 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~ 145 (269)
.|+.+..+.|..+||+||+|+|..+..+++... ..+|++||++|.+++.|++++.... ..+++++++|+..- .
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEEEES-GGGTTG
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeEEEcchhhccc
Confidence 344444578899999999999999999998653 5589999999999999999975322 34799999999876 5
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...+||.|++.+.-. +.-..+.+.|++||++++-+.
T Consensus 138 ~~apfD~I~v~~a~~----------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVP----------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBS----------S--HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccc----------hHHHHHHHhcCCCcEEEEEEc
Confidence 667899999875432 222446677999999999775
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=96.55 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=90.2
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----- 144 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----- 144 (269)
....+.+..+|||||||+|.++..+++.+ +..+|+++|+++.+ . .++++++.+|+.+.
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~--------~~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P--------IENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c--------CCCceEEEeeCCChhHHHH
Confidence 34456678999999999999999998876 46799999999954 1 13578888888653
Q ss_pred ----ccCCCeeEEEEcCCCCC-CC--CCCCC----cHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHH
Q 035593 145 ----SLKDGFSGILVDLFSKG-SL--LSELE----DPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLK 213 (269)
Q Consensus 145 ----~~~~~yD~I~~d~~~~~-~~--~~~l~----~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (269)
...++||+|++|...+. .. ..++. ..++++.+.+.|+|||.+++..+... .+..++.
T Consensus 90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~------------~~~~~l~ 157 (188)
T TIGR00438 90 IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE------------EIDEYLN 157 (188)
T ss_pred HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc------------cHHHHHH
Confidence 23457999998753211 11 11111 25789999999999999999765431 2456778
Q ss_pred HHHHHhcCceEEE
Q 035593 214 AMHKVFGKKLYVL 226 (269)
Q Consensus 214 ~l~~~F~~~v~~~ 226 (269)
.++..|. .+...
T Consensus 158 ~l~~~~~-~~~~~ 169 (188)
T TIGR00438 158 ELRKLFE-KVKVT 169 (188)
T ss_pred HHHhhhc-eEEEe
Confidence 8888885 45444
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-11 Score=102.20 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++... ..+++++.+|+.+....++||+|+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~------~~~~~~~~~d~~~~~~~~~fD~Vi 106 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA------GVDVDVRRGDWARAVEFRPFDVVV 106 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh------CCeeEEEECchhhhccCCCeeEEE
Confidence 456789999999999999998874 3459999999999999999887433 235889999987764557899999
Q ss_pred EcCCCCCCCCC-----------------CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLS-----------------ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~-----------------~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++..-...... ......+++.+.+.|+|||++++...
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 98532111000 00124688899999999999987543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=110.61 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=81.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
+..+|||||||+|.++..+++..++.+++++|+++++++.|+++... .+++++.+|+.+. ...+.||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEEEE
Confidence 56799999999999999998877778999999999999999997642 3688999999887 45678999987
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...-. .. ......++++++.|+|||.+++.
T Consensus 185 ~~~L~-~~---~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 185 AGSIE-YW---PDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred cChhh-hC---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 42111 11 12357999999999999998764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=113.40 Aligned_cols=110 Identities=23% Similarity=0.194 Sum_probs=82.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.|++++.... ...+++++.+|+.+....++||+|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFENIEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC----CccceeeeecchhhhCcCCCccEEEECC
Confidence 468999999999999999988899999999999999999999864322 1357999999987654456899999975
Q ss_pred CCCCC-----C-------CCC--CC--------cHHHHHHHHhhccCCcEEEEEec
Q 035593 158 FSKGS-----L-------LSE--LE--------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 158 ~~~~~-----~-------~~~--l~--------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+-... . .+. +. ...+++.+.+.|+|||.+++-+.
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 32110 0 010 11 13456677889999999998754
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=101.99 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=86.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.++||||||.|..+.+|++ .+..|+++|+++..++.+++..... +-.++....|..++..++.||+|+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~------~l~i~~~~~Dl~~~~~~~~yD~I~ 99 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEE------GLDIRTRVADLNDFDFPEEYDFIV 99 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHT------T-TEEEEE-BGCCBS-TTTEEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhc------CceeEEEEecchhccccCCcCEEE
Confidence 34689999999999999999998 4889999999999999887765322 224899999998885567899998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
+..... ...+. ..+..++.++++++|||++++.......+++.+. +..+.---..|++.|.
T Consensus 100 st~v~~-fL~~~-~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~---~~~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 100 STVVFM-FLQRE-LRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS---PFPFLLKPGELREYYA 160 (192)
T ss_dssp EESSGG-GS-GG-GHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS-----S--B-TTHHHHHTT
T ss_pred EEEEec-cCCHH-HHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC---CCCcccCHHHHHHHhC
Confidence 643211 11111 2357899999999999998886543333222221 1111112245777775
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=108.96 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|..+.++++ .+.+|+++|+|+.+++.+++..... .-++++...|+......++||+|++.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~------~l~v~~~~~D~~~~~~~~~fD~I~~~ 191 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKE------NLNIRTGLYDINSASIQEEYDFILST 191 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHc------CCceEEEEechhcccccCCccEEEEc
Confidence 567999999999999999987 4689999999999999999876432 23688888888766447789999975
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-+ ...+ -....+++.+.++|+|||++++..
T Consensus 192 ~vl~-~l~~-~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 192 VVLM-FLNR-ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred chhh-hCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3221 0111 123589999999999999866543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=106.29 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++++|||+|||+|.++...++ ....+|.++|+||..++.|++++.++.. ...++.-..+.......++||+|+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v----~~~~~~~~~~~~~~~~~~~~DvIV 234 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGV----ELLVQAKGFLLLEVPENGPFDVIV 234 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCC----chhhhcccccchhhcccCcccEEE
Confidence 44799999999999999999998 3456899999999999999999876542 112223333333334457999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+.-... -.++...+++.|+|||.+++.-.-
T Consensus 235 ANILA~v-------l~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 235 ANILAEV-------LVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ehhhHHH-------HHHHHHHHHHHcCCCceEEEEeeh
Confidence 8754321 258899999999999999997653
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-11 Score=101.53 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=79.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.+..+|||+|||+|..+..+++.. .+++++|+++++++.|++++.... -.+++++.+|+.+. ...++||+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCCCcCCCcCE
Confidence 45578899999999999998887753 489999999999999999875322 23599999998764 44478999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+++... ..+.+.+.+.|+|||.+++...
T Consensus 148 I~~~~~~----------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAA----------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCc----------hhhhHHHHHhcCCCcEEEEEEc
Confidence 9987532 1234567889999999999875
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=108.59 Aligned_cols=108 Identities=20% Similarity=0.172 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|.++..+++++|+.+++++|+ |.+++.++++..... ..+|++++.+|+.+... +.+|+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~~~~~-~~~D~v~ 220 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYKESY-PEADAVL 220 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCccCCCC-CCCCEEE
Confidence 34568999999999999999999999999999998 899999998764322 14689999999986422 2479987
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+.-.-+. .. .-....++++++++|+|||.+++.-
T Consensus 221 ~~~~lh~-~~-~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 221 FCRILYS-AN-EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred eEhhhhc-CC-hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6432111 00 0112468999999999999998764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-11 Score=100.51 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=87.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCC------ceEEEEECChHHHHHHHHhc---CccccccCCCCcEEEEEcccccc-ccC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPE------AVIHGWELDPSVIKVAREFF---ALEKLEKSYPDRLFVYVGNALKA-SLK 147 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~------~~v~~vEidp~~~~~a~~~~---~~~~~~~~~~~rv~~~~~D~~~~-~~~ 147 (269)
..++||++||+|-++-.++++.+. .+|+++||||.|+..++++. ++. .++++.++.+||.+. ..+
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~-----~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK-----ASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC-----cCCceEEEeCCcccCCCCC
Confidence 579999999999999999987665 79999999999999999987 433 256799999999999 778
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..||...+. |. +...-..+..+++++++|||||++.+-.++.
T Consensus 176 ~s~D~yTia-fG---IRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 176 DSFDAYTIA-FG---IRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred CcceeEEEe-cc---eecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 899998763 22 2222234789999999999999998766654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=103.71 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||+|||+|.++..+++. ...+|+++|+||.+++.|++++..+.. ..++.+..+| .+||+|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~-------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD-------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC-------CCcCEEE
Confidence 447899999999999999987763 344799999999999999998754321 1234443332 2799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++..... ...++..+.+.|+|||.+++....
T Consensus 185 ani~~~~-------~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 185 ANILANP-------LLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred EcCcHHH-------HHHHHHHHHHhcCCCcEEEEEECc
Confidence 8653211 257889999999999999987543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=117.09 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.++.+|||||||+|..+..+++.+|+.+++++|+++.|++.|++..... ..+++++++|+.++ ..+++||+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc------CCCeEEEEcchHhCccccCCCCEEE
Confidence 3678999999999999999998889999999999999999999875322 24688999999875 34678999
Q ss_pred EEEcCCCCCC---CC------CCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGS---LL------SELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~---~~------~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++...-+.. .+ ..-....++++++++|||||.+++...
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9875322210 01 011236899999999999999998653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-11 Score=101.06 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=85.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
.+..+|||||||+|..+..+++..+ ..+++++|+++.+++.|++++.... ...+++++.+|+.+. ...+.||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEecccccCCCCCCCccEE
Confidence 3678999999999999999998877 6899999999999999999875321 135789999999877 445789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++...-+ .. -....+++.+.+.|+|||.+++...
T Consensus 126 ~~~~~l~-~~---~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 126 TIAFGLR-NV---PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEecccc-cC---CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 8743211 11 1246899999999999998877544
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=108.28 Aligned_cols=121 Identities=18% Similarity=0.087 Sum_probs=90.1
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.|+.+..+.+..+|||+|||+|.++..++. .+.+++++|+|+.|++.|++++.... -..++++.+|+.+.
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~~~D~~~l 242 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYG-----IEDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEEecchhcC
Confidence 444554333456778999999999999988765 47899999999999999998874322 12388999999987
Q ss_pred -ccCCCeeEEEEcCCCCCCCC--CCC---CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 145 -SLKDGFSGILVDLFSKGSLL--SEL---EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~--~~l---~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
...++||+|++|++-..... .+. ...++++.+++.|+|||.+++.+..
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 44678999999864332111 111 1368999999999999999987754
|
This family is found exclusively in the Archaea. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-11 Score=109.87 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+..+|||||||+|.++..+++++ +++|+++|+++++++.|+++.. ...+++..+|..+. .++||+|
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--------~l~v~~~~~D~~~l--~~~fD~I 232 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--------GLPVEIRLQDYRDL--NGQFDRI 232 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--------cCeEEEEECchhhc--CCCCCEE
Confidence 35678899999999999999998864 7899999999999999999863 12488888887765 4689999
Q ss_pred EEcC-CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDL-FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~-~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++.. +.+ . ..-....+++.+.+.|||||.+++..+..
T Consensus 233 vs~~~~eh--v-g~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 233 VSVGMFEH--V-GPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred EEeCchhh--C-ChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 8632 111 1 11113589999999999999999876543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=106.46 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=77.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC---ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE---AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~---~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+..+|||+|||+|.++..+++..+. .+++++|+++.+++.|++.. +++++.++|+.+. ..++.||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCceeE
Confidence 3578999999999999999887663 47999999999999998864 3578999998887 45678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+... . +.+++++++.|+|||.+++...++
T Consensus 155 I~~~~-~----------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 155 IIRIY-A----------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEec-C----------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 98632 1 234678899999999999876543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=108.53 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..+.++|||+|||+|.++...++. ...+|+++|+||..++.|++++.++.. ..++++. ...+ ....+||+|+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~----~~~~~v~--~~~~-~~~~~~dlvv 230 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGV----EDRIEVS--LSED-LVEGKFDLVV 230 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-----TTCEEES--CTSC-TCCS-EEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCC----CeeEEEE--Eecc-cccccCCEEE
Confidence 446789999999999999999984 455899999999999999999876652 3466653 1111 2348999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+..... ..+....+.++|+|||.+++.-.-
T Consensus 231 ANI~~~v-------L~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 231 ANILADV-------LLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp EES-HHH-------HHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ECCCHHH-------HHHHHHHHHHhhCCCCEEEEcccc
Confidence 8765331 247788889999999999997654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-11 Score=99.28 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=84.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
.++.+|||+|||+|..+..+++..+. .+++++|+++.+++.+++++.. ..+++++.+|+.+. ...++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcCCCCCCcEEEE
Confidence 36889999999999999999988775 7999999999999999998751 35789999999887 445689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++..... ..-....+++.+++.|+|||.+++...
T Consensus 111 ~~~~~~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 111 TIAFGLR----NVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEeeeeC----CcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8743211 111246899999999999999987544
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-11 Score=99.79 Aligned_cols=112 Identities=11% Similarity=0.020 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc-------ccCCCCcEEEEEccccccc--c
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL-------EKSYPDRLFVYVGNALKAS--L 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~-------~~~~~~rv~~~~~D~~~~~--~ 146 (269)
.+..+||++|||.|..+.+|++ .+.+|++||++|..++.+.+..+.... ......+++++++|+.++. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3567999999999999999998 488999999999999987554332210 0001357999999999873 2
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.++||.|+-...-. ..++. ....+++.+.+.|+|||.+++..+
T Consensus 111 ~~~fD~i~D~~~~~-~l~~~-~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 111 LGPVDAVYDRAALI-ALPEE-MRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCCcCEEEechhhc-cCCHH-HHHHHHHHHHHHcCCCCeEEEEEE
Confidence 46799997422211 12221 245799999999999997555544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.5e-11 Score=104.90 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD 151 (269)
.+.+..+|||||||+|.++..+++..+ ..+|+++|+++++++.|++.+...+ ..+++++.+|+... .....||
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhcccccCCcc
Confidence 355778999999999999999998765 3589999999999999998764322 24699999998776 3446799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+++... .+....+.+.|+|||.+++..
T Consensus 152 ~Ii~~~g~----------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGV----------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCch----------HHhHHHHHHhcCCCCEEEEEe
Confidence 99986321 223445678999999988865
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=100.21 Aligned_cols=131 Identities=17% Similarity=0.075 Sum_probs=96.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
..++.+|||+|||+|..+..+++... ..+|+++|+++.+++.+++++.... -.+++++.+|+..+ ...+.||+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHHhhhhccCCCE
Confidence 35678999999999999999988764 4699999999999999999875332 24699999999877 34456999
Q ss_pred EEEcCCCCCC-CC---CCC--------------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHH
Q 035593 153 ILVDLFSKGS-LL---SEL--------------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKA 214 (269)
Q Consensus 153 I~~d~~~~~~-~~---~~l--------------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (269)
|++|++-... +. +.. ...++++.+.+.|+|||+++....+... .....+++.
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~----------~Ene~vv~~ 213 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP----------EENEAVVDY 213 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh----------HHHHHHHHH
Confidence 9999754321 10 110 1246899999999999999887665532 123456666
Q ss_pred HHHHhc
Q 035593 215 MHKVFG 220 (269)
Q Consensus 215 l~~~F~ 220 (269)
+.+.++
T Consensus 214 ~l~~~~ 219 (264)
T TIGR00446 214 LLEKRP 219 (264)
T ss_pred HHHhCC
Confidence 666665
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-11 Score=99.06 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=93.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.-.++||+|||.|.++..|+.++ .+++++|+++..++.||++..- .++|+++++|..++.+.++||+|++.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---SS-EEEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 35789999999999999998864 5899999999999999999862 36899999999988888999999974
Q ss_pred CCCCCCCCCCCCc----HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcC-CC
Q 035593 157 LFSKGSLLSELED----PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLG-NR 231 (269)
Q Consensus 157 ~~~~~~~~~~l~~----~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~-~~ 231 (269)
- +...+.. ..+++.+.++|+|||.+++-.+.... -...........+...+.+.|- .+-.+.+. ..
T Consensus 114 E-----VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~---c~~wgh~~ga~tv~~~~~~~~~-~~~~~~~~~~~ 184 (201)
T PF05401_consen 114 E-----VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN---CRRWGHAAGAETVLEMLQEHLT-EVERVECRGGS 184 (201)
T ss_dssp S------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH---HHHTT-S--HHHHHHHHHHHSE-EEEEEEEE-SS
T ss_pred h-----HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc---ccccCcccchHHHHHHHHHHhh-heeEEEEcCCC
Confidence 2 2223322 35889999999999999986543210 0000001124456677777774 55555443 22
Q ss_pred Cc--eEEEEecCC
Q 035593 232 KD--DSLIALTGE 242 (269)
Q Consensus 232 ~n--~v~~~~~~~ 242 (269)
.| -++..+.+|
T Consensus 185 ~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 185 PNEDCLLARFRNP 197 (201)
T ss_dssp TTSEEEEEEEE--
T ss_pred CCCceEeeeecCC
Confidence 33 345555555
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-11 Score=98.17 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEE-EEEcccccc--ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLF-VYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~-~~~~D~~~~--~~~~~yD~I~ 154 (269)
...||++|||+|..-.+.-- .|+.+||++|.+|.|-+.+.+.+.... ..++. ++++++++. ..+.+||+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeeeEE
Confidence 45789999999999887543 378899999999999999999885432 35677 999999998 4788999998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.-.. ...+-...+.++++++.|+|||++++.-...
T Consensus 151 ~Tlv----LCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 151 CTLV----LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEE----EeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 6421 2223335799999999999999999866544
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=107.71 Aligned_cols=114 Identities=16% Similarity=0.015 Sum_probs=83.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~y 150 (269)
.++++|||+|||+|.++..++. ....+|++||+|+.+++.|++++..+.. ...+++++.+|+.++ . ..++|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 4678999999999999887665 2345999999999999999999866531 124799999999987 1 35689
Q ss_pred eEEEEcCCCCCCCCCCC-----CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 151 SGILVDLFSKGSLLSEL-----EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l-----~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+|++|++.-......+ .-.++++.+.+.|+|||++++...+.
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999965421110011 12356677889999999988755544
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-10 Score=97.10 Aligned_cols=148 Identities=18% Similarity=0.252 Sum_probs=96.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+.|..+|||||||+|..+..+++... ..+|++||+++++.+...+.... .+++..+.+|++.- ...+.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCccChhhhhcccCC
Confidence 56788999999999999999998763 56999999999765433333211 24689999998742 23458
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEc
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSL 228 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~ 228 (269)
+|+|++|...++ ....+..++++.|||||.|++.+-..+. ....+.+..+.+.++.|++. |. .+..+..
T Consensus 203 vDvV~~Dva~pd------q~~il~~na~r~LKpGG~~vI~ika~~i---d~g~~pe~~f~~ev~~L~~~GF~-~~e~v~L 272 (293)
T PTZ00146 203 VDVIFADVAQPD------QARIVALNAQYFLKNGGHFIISIKANCI---DSTAKPEVVFASEVQKLKKEGLK-PKEQLTL 272 (293)
T ss_pred CCEEEEeCCCcc------hHHHHHHHHHHhccCCCEEEEEEecccc---ccCCCHHHHHHHHHHHHHHcCCc-eEEEEec
Confidence 999999975321 1235667899999999999984322221 11112233344556778887 84 4444444
Q ss_pred CC--CCceEEEEe
Q 035593 229 GN--RKDDSLIAL 239 (269)
Q Consensus 229 ~~--~~n~v~~~~ 239 (269)
+. ....++++.
T Consensus 273 ~Py~~~h~~v~~~ 285 (293)
T PTZ00146 273 EPFERDHAVVIGV 285 (293)
T ss_pred CCccCCcEEEEEE
Confidence 32 233444444
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=104.64 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=79.7
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-cCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-KSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
.+|||+|||+|.++..|++ -++.|+++|+++.+++.|+++....+.. ..-.-|+++.+.|+.... ++||+|++-
T Consensus 91 ~~ilDvGCGgGLLSepLAr--lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcs- 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR--LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCS- 165 (282)
T ss_pred ceEEEeccCccccchhhHh--hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeH-
Confidence 7799999999999999998 3789999999999999999995443311 000125777777776653 349999963
Q ss_pred CCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 158 FSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 158 ~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+..|. ..++|++.+.+.|+|+|.+.+...+.
T Consensus 166 ----evleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 ----EVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ----HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 122222 24799999999999999999877654
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-10 Score=99.89 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=80.3
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCC
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFS 159 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~ 159 (269)
+|||||||+|.++..+++..|.++|+++||||..++.|+++..... -.++.++.+|.+.-. .++||+|+++.+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~-----l~~~~~~~~dlf~~~-~~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG-----LVRVLVVQSDLFEPL-RGKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC-----CccEEEEeeeccccc-CCceeEEEeCCCC
Confidence 7999999999999999999999999999999999999999975432 145667767655432 3399999987431
Q ss_pred CCCC-----C------C--CC--------CcHHHHHHHHhhccCCcEEEEEec
Q 035593 160 KGSL-----L------S--EL--------EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 160 ~~~~-----~------~--~l--------~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
-... + | .+ ....++..+.+.|+|||++++-+.
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1110 0 0 00 124678888999999999999875
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=96.33 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=93.3
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEEEE
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I~~ 155 (269)
-+||||||.|.....+++..|+..+.+||+....+..|.+...... -+++.++.+|+..+ ..+++.|.|++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHHhhcccCCchheEEE
Confidence 7999999999999999999999999999999999998887764332 46899999999985 45689999999
Q ss_pred cCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 156 DLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 156 d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
..+++..-. ..+.+.+|++.+.++|+|||.+.+-.-. ..+...++..+.+.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~------------~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV------------EEYAEWMLEQFEES 149 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-------------HHHHHHHHHHHHHH
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC------------HHHHHHHHHHHHhc
Confidence 887774321 2478899999999999999999886632 34566666666664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=106.24 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=88.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD 151 (269)
..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.+++++... +.+++++.+|+... ...++||
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~------g~~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL------GLKATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEcCcccchhhcccCCCC
Confidence 45688999999999999999999877789999999999999999987532 12478999999875 2356899
Q ss_pred EEEEcCCCCC-CC----CC--CCC-----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SL----LS--ELE-----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~----~~--~l~-----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++|++... +. +. ... ..++++.+.+.|+|||.+++...+..
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999975331 11 11 011 13689999999999999998877654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=93.97 Aligned_cols=101 Identities=26% Similarity=0.259 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||||+|.++..++++ +.+++++|+|+.+++.+++++.. .++++++.+|+.++ .....||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcCCccccCCCEE
Confidence 446679999999999999999985 67999999999999999998742 35799999999988 344469999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhh--ccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQC--LRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~--L~pgG~l~~~~~ 191 (269)
+.+.+- +. +.+.+..+.+. +.++|++++...
T Consensus 82 i~n~Py------~~-~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 82 VGNLPY------NI-STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EECCCc------cc-HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 986432 22 34555555543 347888888754
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=92.35 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=82.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+.++|||+|||+|.++..+++. +.+|+++|+++++++.+++++....+ .+.++.++.+|..+.....+||+|++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFEPFRGDKFDVILF 96 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccccccccCceEEEE
Confidence 46779999999999999999985 68999999999999999988753321 12238899999876544448999998
Q ss_pred cCCCCCCCCC-----------------CCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLS-----------------ELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~-----------------~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+..-....+. ......+++++.+.|+|||.+++....
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 6432110000 001256899999999999998887644
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=101.23 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=81.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
+..+|||+|||+|.++..++++.+..+|++||+++.+++.|++.+ ++++++.+|++++....+||+|+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~~~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhcccCCCcEEEEc
Confidence 467999999999999998888766789999999999999999864 2588999999988555789999997
Q ss_pred CCCCCC-CC---C-----------C-CCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGS-LL---S-----------E-LEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~-~~---~-----------~-l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+-... .. . . +.-.+++......|+|+|.+.+-..
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 543311 10 0 0 1125788999999999997665543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=103.76 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHH---HHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVA---REFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a---~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.++++|||||||+|.++..++...+ ..|+++|+++.|+..+ ++.... ..++.+...|+.+......||+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~-------~~~v~~~~~~ie~lp~~~~FD~ 191 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDN-------DKRAILEPLGIEQLHELYAFDT 191 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhcc-------CCCeEEEECCHHHCCCCCCcCE
Confidence 4578999999999999988887533 4799999999998654 333221 3578888888887744458999
Q ss_pred EEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|++.. +..|. ...++++++++.|+|||.|++..
T Consensus 192 V~s~g-----vL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMG-----VLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcc-----hhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99742 12222 23589999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=97.59 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||||||+|..+..+++..|+.++++||+|+++++.|++++ ++++++.+|+.+....++||+|+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~~~~~~sfD~V~ 110 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFDPFKDNFFDLVL 110 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccCCCCCCCEEEEE
Confidence 44678999999999999999998778899999999999999999864 24678888987754567999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCcccccccc--chhHHHHHHHHHHHHHhcC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRR--DGKVVMEATLKAMHKVFGK 221 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~F~~ 221 (269)
+...-. ...+ -...++++++.+.++ +-+++.....+.. .+.+.+ .+.-..+.....+.+.|++
T Consensus 111 ~~~vL~-hl~p-~~~~~~l~el~r~~~-~~v~i~e~~~~~~-~~~~y~~~~~~~~~~d~~~~~~~~~~~ 175 (204)
T TIGR03587 111 TKGVLI-HINP-DNLPTAYRELYRCSN-RYILIAEYYNPSP-VEISYRGNSGRLWKRDFAGEMMDRYPD 175 (204)
T ss_pred ECChhh-hCCH-HHHHHHHHHHHhhcC-cEEEEEEeeCCCc-eeeeeeCCcchhhhhhHHHHHHHhCCc
Confidence 753211 1111 113578888888873 2333434433211 111111 1122334455667777863
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=107.28 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=89.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
..++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...+ -.+++++.+|+..+....+||+|
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~~~~~~~fD~V 322 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARSFSPEEQPDAI 322 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCcccccccCCCCCEE
Confidence 34678999999999999998887654 5699999999999999998874322 23699999999887555689999
Q ss_pred EEcCCCCC-CC----CC---CCC----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 154 LVDLFSKG-SL----LS---ELE----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 154 ~~d~~~~~-~~----~~---~l~----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
++|++... +. +. ... ..++++.+.+.|+|||++++...+..
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99965432 11 10 111 23689999999999999999988764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=99.08 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=74.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC---CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLY---PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~---p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+|||+|||+|.++..++++. +..+|++||||+.++++|+++. ++++++.+|+..+....+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------~~~~~~~~D~~~~~~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------PEATWINADALTTEFDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------cCCEEEEcchhcccccCCccEE
Confidence 36799999999999999998864 3569999999999999999864 2488999999877445689999
Q ss_pred EEcCCCCCCCCC--------CCCcHHHHHHHHhhccCCcE
Q 035593 154 LVDLFSKGSLLS--------ELEDPNTWEKLRQCLRKGGR 185 (269)
Q Consensus 154 ~~d~~~~~~~~~--------~l~~~e~~~~~~~~L~pgG~ 185 (269)
|++.+-...... .+....+++.+.+.+++|+.
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 998643321111 12234688888885555554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-10 Score=104.83 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=87.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD 151 (269)
..+..+|||+|||+|..+..++++. ++.+|+++|+++.+++.+++++...+ -.+++++.+|+.++. ..++||
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCcccccchhcccCC
Confidence 4567899999999999999999876 56799999999999999999874322 134999999998762 236899
Q ss_pred EEEEcCCCCC-CC----CCC---C----------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SL----LSE---L----------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~----~~~---l----------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|++|++... +. +.. . ...++++.+.+.|+|||.++....+..
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 9999975321 11 100 0 124689999999999999998766543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=103.53 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHH--hcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVARE--FFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~--~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
++++|||||||+|..+..+++..+ ..|+++|+++.++..++. .+. . ...+++++.+|+.++...++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~-~-----~~~~i~~~~~d~e~lp~~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL-G-----NDQRAHLLPLGIEQLPALKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc-C-----CCCCeEEEeCCHHHCCCcCCcCEEE
Confidence 478999999999999999988643 369999999999865432 221 1 1357999999998874477899999
Q ss_pred EcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+-.. ..|. ....+++++++.|+|||.+++..
T Consensus 195 s~~v-----l~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGV-----LYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECCh-----hhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 7321 1122 23689999999999999998864
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.3e-11 Score=104.46 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=77.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe---e
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF---S 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y---D 151 (269)
++.+|||+|||+|..+..+++..+ +.++++||+|++|++.|++++.... ..-+++.+++|+.+. .....+ +
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcccchhhhhcccccCC
Confidence 567899999999999999998776 6899999999999999998763210 023577789999874 222222 2
Q ss_pred --EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 --GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 --~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+++++..-. ... .-....++++++++|+|||.+++.+..
T Consensus 139 ~~~~~~gs~~~-~~~-~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 139 RLGFFPGSTIG-NFT-PEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred eEEEEeccccc-CCC-HHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 333322111 111 111347999999999999999976543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=104.75 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=89.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD 151 (269)
..++.+|||+|||+|..+.++++... +.+|+++|+++.+++.+++++...+ -.+++++.+|+..+. ..++||
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhhhhhhhhccCC
Confidence 45678999999999999999998763 6799999999999999998874221 235899999998762 456899
Q ss_pred EEEEcCCCCC-CCC---CCC--------------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SLL---SEL--------------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~~---~~l--------------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++|++... +.. +.. ...+.+..+.+.|+|||.++....+..
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999975532 111 100 125678999999999999999887764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-10 Score=95.78 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=70.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||||||+|.++..+++.+ +.+|+++|++++|++.|++.. ..+++|+... ..+++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCCCCCCEEEEEe
Confidence 47899999999999999999875 679999999999999998641 2457888877 56789999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKG 183 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pg 183 (269)
... .......+..+++++++|||.
T Consensus 117 ~~~----l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFA----LHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cCh----hhccCCHHHHHHHHHHHhcCc
Confidence 432 111123468999999999994
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.9e-10 Score=103.93 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=86.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---cCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---LKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~~~~yD 151 (269)
..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.+++++...+. ..++++..+|+.... ..++||
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEeccccccccccccccccC
Confidence 3467899999999999999999887778999999999999999988743220 123445667776542 456899
Q ss_pred EEEEcCCCCC-CCC---CCC---C-----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SLL---SEL---E-----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~~---~~l---~-----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++|++... +.. +.+ . ..++++.+.+.|||||.+++..++..
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999975332 221 110 0 25799999999999999999887764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-10 Score=95.69 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHH----CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDL----YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~----~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
.++.+|||||||+|.++..+++. .++.+|+++|++++|++.|++.... .++++...|+... ..+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 35779999999999999888753 2457999999999999999987542 3466666666555 356789
Q ss_pred eEEEEcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEecCC
Q 035593 151 SGILVDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+|++...- .|+.. .++++++++.++ |.++++....
T Consensus 131 D~V~~~~~l-----hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 131 DVVTSNHFL-----HHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred cEEEECCee-----ecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 999985321 22222 469999999987 5666665543
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-10 Score=81.54 Aligned_cols=101 Identities=24% Similarity=0.301 Sum_probs=79.3
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeEEEEcC
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~I~~d~ 157 (269)
+|+|+|||.|..+..+.+ .+..+++++|+++..++.+++...... ..+++++.+|..+.. ...+||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 589999999999999987 567899999999999999985322111 357999999998873 567899999875
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..... .-....+++.+.+.|+++|.+++.
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 43210 123478999999999999999874
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.6e-10 Score=94.42 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc-------ccCCCCcEEEEEccccccc--c
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL-------EKSYPDRLFVYVGNALKAS--L 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~-------~~~~~~rv~~~~~D~~~~~--~ 146 (269)
.+..+||++|||.|..+.+|++ .+.+|++||+++..++.+.+..++... ......+++++++|+.++. .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 3567999999999999999998 488999999999999987554333210 0112468999999999882 3
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
...||+|+--..-. ..++. ....+++.+.+.|+|||.+.
T Consensus 114 ~~~fd~v~D~~~~~-~l~~~-~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 LADVDAVYDRAALI-ALPEE-MRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred CCCeeEEEehHhHh-hCCHH-HHHHHHHHHHHHcCCCCeEE
Confidence 35899998322111 12221 24689999999999998543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-10 Score=111.11 Aligned_cols=114 Identities=14% Similarity=0.071 Sum_probs=86.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.++++|||+|||+|.++.++++. ...+|++||+|+.+++.|++++..+++ ...+++++.+|+.++ ...++||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHcCCCcCEE
Confidence 35789999999999999999973 345799999999999999999866542 125899999999887 335789999
Q ss_pred EEcCCCCCCCCC--CC-----CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLS--EL-----EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~--~l-----~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++|++.-..... .. ...++++.+.+.|+|||++++.....
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999653211100 00 12467888899999999998866443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=101.93 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=88.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----cCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS-----LKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~~ 148 (269)
..+..+|||+|||+|..+..+++... ..+|+++|+++.+++.+++++...+ -.+++++.+|+..+. ..+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEEEEeCChhhcccccccccc
Confidence 34678999999999999999998754 5699999999999999998874322 235999999998762 246
Q ss_pred CeeEEEEcCCCCC-CC----CC--CCC-----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 149 GFSGILVDLFSKG-SL----LS--ELE-----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 149 ~yD~I~~d~~~~~-~~----~~--~l~-----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+||.|++|++... +. +. ... ..++++.+.+.|||||.++....+..
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 8999999975331 11 11 000 35789999999999999998776654
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=93.36 Aligned_cols=106 Identities=20% Similarity=0.030 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.+..+|||+|||+|.++..++.+. ..+|++||+++.+++.+++++.... -.+++++.+|+.++ ...++||+|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~~~D~~~~l~~~~~~fDlV 125 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLK-----AGNARVVNTNALSFLAQPGTPHNVV 125 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEchHHHHHhhcCCCceEE
Confidence 356799999999999998765533 4699999999999999999875432 23699999999876 234579999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhh--ccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQC--LRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~--L~pgG~l~~~~~~ 192 (269)
++|++-... ...+.++.+.+. |+|+|++++....
T Consensus 126 ~~DPPy~~g-----~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 126 FVDPPFRKG-----LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EECCCCCCC-----hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 998652111 134566666553 7899999887643
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=99.91 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=78.0
Q ss_pred CCCcEEEEcCcccH----HHHHHHHHCC-----CceEEEEECChHHHHHHHHhcC-------cccc----------c---
Q 035593 77 PPGPIGILGFGAGS----AARLILDLYP-----EAVIHGWELDPSVIKVAREFFA-------LEKL----------E--- 127 (269)
Q Consensus 77 ~~~~VL~iG~G~G~----~~~~l~~~~p-----~~~v~~vEidp~~~~~a~~~~~-------~~~~----------~--- 127 (269)
++.+|+++|||+|. ++..+++..+ +.+|+++|+|+.|++.|++..- .++. +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 6666766554 4799999999999999997531 0000 0
Q ss_pred --cCCCCcEEEEEcccccc-ccCCCeeEEEEcCCCCCCCCCCC---CcHHHHHHHHhhccCCcEEEEEe
Q 035593 128 --KSYPDRLFVYVGNALKA-SLKDGFSGILVDLFSKGSLLSEL---EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 128 --~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l---~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-..++++.++|..+. ...++||+|++-- +..++ ....+++.+++.|+|||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-----vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-----VLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEech-----hHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 00013689999999876 3467899999721 11122 23479999999999999999844
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=93.42 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=90.8
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEEE
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGIL 154 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I~ 154 (269)
..+||||||.|.....++++.|+..+.+||+....+..|.+.....+ -+++.+++.||..+ ..+++.|-|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 47999999999999999999999999999999999999988775332 23799999999986 4555999999
Q ss_pred EcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+.-++++.-- ..+...+|++.+.+.|+|||.|.+-.
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 9887775322 24788999999999999999998866
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.7e-10 Score=88.58 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..+..+|||||||.|.++..+.+. +.+++++|+++.+++. .. +.....+.... ...++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK--RN-------------VVFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH--TT-------------SEEEEEECHTHHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh--hh-------------hhhhhhhhhhhhccccchhhH
Confidence 567899999999999999999763 4599999999999988 11 11111222233 567899999
Q ss_pred EEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++... ..++ ...++++.+++.|||||.+++.....
T Consensus 83 ~~~~~-----l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 83 ICNDV-----LEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEESS-----GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhHHH-----HhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 97522 1222 24699999999999999999988654
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-10 Score=103.94 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=78.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I 153 (269)
+..+|||||||+|.++..+++. ..+|+++|+++++++.+++..+. .++++++++|+... ...++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGH-------YKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccccccCCCCCCEEEE
Confidence 4679999999999999999985 45899999999999988765332 25799999999743 345789999
Q ss_pred EEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...-. ++. ..++++++++.|+|||++++.-
T Consensus 108 ~~~~~l~-----~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLM-----YLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHH-----hCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9754211 222 2589999999999999998853
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=98.87 Aligned_cols=113 Identities=19% Similarity=0.073 Sum_probs=89.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..++||++=|=||..+.+++. .++ +||.||+|...++.|++++.++.. ...++.++++|++++ ..+.+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHHHHHhcCCcc
Confidence 388999999999999999887 466 999999999999999999987753 256899999999998 345699
Q ss_pred eEEEEcCCCCCCCCCCCCc-----HHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILVDLFSKGSLLSELED-----PNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~-----~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|+|++|+++-......... .+....+.+.|+|||++++...+..
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999997654222222211 3677788899999999988665553
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=108.64 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-----------cCCCCcEEEEEccccccc-
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-----------KSYPDRLFVYVGNALKAS- 145 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-----------~~~~~rv~~~~~D~~~~~- 145 (269)
+.+|||||||+|.++..+++.+|..+|+++|+||++++.|+++...+... .....|++++++|..+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999888889999999999999999987543210 001247999999998763
Q ss_pred c-CCCeeEEEEcCCCCC-----CC--------C--------C--CCCc-----------HHHHHHHHhhccCCcEEEEEe
Q 035593 146 L-KDGFSGILVDLFSKG-----SL--------L--------S--ELED-----------PNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 146 ~-~~~yD~I~~d~~~~~-----~~--------~--------~--~l~~-----------~e~~~~~~~~L~pgG~l~~~~ 190 (269)
. ..+||+|+++.+--. .+ | + .+.. +.++..+.+.|+|||.+++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 247999998753110 00 0 0 1111 456667778999999999999
Q ss_pred cCC
Q 035593 191 GGS 193 (269)
Q Consensus 191 ~~~ 193 (269)
...
T Consensus 279 G~~ 281 (1082)
T PLN02672 279 GGR 281 (1082)
T ss_pred Ccc
Confidence 654
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-10 Score=93.30 Aligned_cols=103 Identities=11% Similarity=0.089 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..+..+|||||||+|.++..+++. +.+|+++|+++++++.|++++.... ...+++++++|+.... ++||+|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~~--~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDLLSLC--GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChhhCC--CCcCEEE
Confidence 346789999999999999999873 6699999999999999999874321 1247999999987654 7899998
Q ss_pred Ec-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+- .... .+. -....+++++.+.+++++++.+
T Consensus 125 ~~~~l~~--~~~-~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIH--YPA-SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHh--CCH-HHHHHHHHHHHHHhCCCEEEEE
Confidence 62 2111 111 1124678889888887666654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=92.18 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.+..+|||||||+|.++..+.+. +.+++++|+++.+++.|++++... ..+++++..|+.++ ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES------GLKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc------CCceEEEecCHHHhhhhcCCCccEE
Confidence 46789999999999999988873 678999999999999999886432 23578888888776 345789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...-. .. -...++++.+.+.|+|||.+++..+.
T Consensus 119 i~~~~l~-~~---~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 119 TCMEMLE-HV---PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EEhhHhh-cc---CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 8742111 11 12468899999999999999987654
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-09 Score=90.53 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=80.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.... ..++++..+|+.++ ...++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhcCCCCCccEEE
Confidence 4789999999999999988873 4579999999999999998875321 12588899998877 2347899998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...-. .. -....+++.+.+.|+|||.+++..+.
T Consensus 118 ~~~~l~-~~---~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 118 CMEVLE-HV---PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred ehhHHH-hC---CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 742111 01 12468999999999999998887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-09 Score=83.31 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=90.3
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
.+.|+..-.......||++|.|+|.+++.++++. +...++++|.|++.+....+.+. .++++.||+.+.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii~gda~~l 106 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----------GVNIINGDAFDL 106 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----------CccccccchhhH
Confidence 4555544333457789999999999999999864 47799999999999999888763 467999999876
Q ss_pred ------ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 ------SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ------~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.....||.|++.+.-- ..+.+ .+.+.++.+..+|..||.++.-.+++
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll-~~P~~-~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLL-NFPMH-RRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccc-cCcHH-HHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 3567899999876432 22222 25799999999999999998877765
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=90.37 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc-CCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL-KDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~-~~~yD~I~~ 155 (269)
...++||+|+|.|.++..++-.. --+|+.||..+..++.|+++++... ..-.++++.-..+|.+ ..+||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEe
Confidence 36799999999999999876522 3499999999999999999986421 2346677777777844 579999997
Q ss_pred cCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEE--EecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 156 DLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMV--NVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 156 d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
- +...||.. .+||++|++.|+|+|++++ |+..... ......+....+....+++.|.
T Consensus 129 Q-----W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---~~~D~~DsSvTRs~~~~~~lF~ 190 (218)
T PF05891_consen 129 Q-----WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---DEFDEEDSSVTRSDEHFRELFK 190 (218)
T ss_dssp E-----S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---EEEETTTTEEEEEHHHHHHHHH
T ss_pred h-----HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---cccCCccCeeecCHHHHHHHHH
Confidence 4 33445554 4899999999999999998 6654321 0111112234445566777774
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=94.94 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=76.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
++.+|||+|||+|.++..+++ ++.+|+++|+++.+++.|++++.... -.+++++.+|+.++ ...++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELG-----LTNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEcCHHHHHHhcCCCCeEEE
Confidence 468999999999999999988 46799999999999999999875432 24799999999887 2345799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|.+... ...+..+.+ ..++|++++.+.+..
T Consensus 246 ~dPPr~G------~~~~~~~~l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 246 VNPPRRG------IGKELCDYL-SQMAPRFILYSSCNA 276 (315)
T ss_pred ECCCCCC------ccHHHHHHH-HHcCCCeEEEEECCc
Confidence 9854221 123444433 447888877776644
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=88.98 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=89.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc-------ccCCCCcEEEEEccccccc--
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL-------EKSYPDRLFVYVGNALKAS-- 145 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~-------~~~~~~rv~~~~~D~~~~~-- 145 (269)
..++.+||+.|||.|.-..+|++ .+.+|++||+++..++.|.+..+..+. ......+++++++|.+++.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~--~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAE--QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHH--TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHH--CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 44677999999999999999998 378999999999999998554332110 0123568999999999983
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCc
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKK 222 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~ 222 (269)
..++||+|+ |-..-..+++. ...++.+.+.+.|+|||.+++....... ....+.+ +.-....+++.|+..
T Consensus 113 ~~g~fD~iy-Dr~~l~Alpp~-~R~~Ya~~l~~ll~p~g~~lLi~l~~~~----~~~~GPP-f~v~~~ev~~l~~~~ 182 (218)
T PF05724_consen 113 DVGKFDLIY-DRTFLCALPPE-MRERYAQQLASLLKPGGRGLLITLEYPQ----GEMEGPP-FSVTEEEVRELFGPG 182 (218)
T ss_dssp CHHSEEEEE-ECSSTTTS-GG-GHHHHHHHHHHCEEEEEEEEEEEEES-C----SCSSSSS-----HHHHHHHHTTT
T ss_pred hcCCceEEE-EecccccCCHH-HHHHHHHHHHHHhCCCCcEEEEEEEcCC----cCCCCcC-CCCCHHHHHHHhcCC
Confidence 335899998 43222234433 3679999999999999983322221111 1111222 233456788888643
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=92.54 Aligned_cols=102 Identities=21% Similarity=0.227 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+.++|+|||+|.|..+..+++++|+.+++++|+ |.+++.+++ . +|++++.+|.++- .+. +|+|
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~-------~rv~~~~gd~f~~-~P~-~D~~ 162 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----A-------DRVEFVPGDFFDP-LPV-ADVY 162 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----T-------TTEEEEES-TTTC-CSS-ESEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----c-------cccccccccHHhh-hcc-ccce
Confidence 344567899999999999999999999999999999 999999988 1 5899999999833 233 9999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCC--cEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKG--GRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg--G~l~~~~~ 191 (269)
++--.-+.. ++ -.....++++++.|+|| |.|++.-.
T Consensus 163 ~l~~vLh~~-~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 163 LLRHVLHDW-SD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEESSGGGS--H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred eeehhhhhc-ch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 974322211 11 11358999999999999 98887543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.7e-09 Score=84.38 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=78.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE--
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL-- 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~-- 154 (269)
..+|||+|||.|.+...|++.--....++||.++..+++|+....... .+..+++.+.|..+- ...++||+|+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~----~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG----FSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC----CCcceeEEEeeccCCcccccceeEEeec
Confidence 349999999999999999985334469999999999999986653322 123599999998875 5566788876
Q ss_pred --EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 --VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 --~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.|+.+-....+.--..-++..+.+.|+|||++++...+.
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 222211100010011357788889999999999977665
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=98.12 Aligned_cols=102 Identities=21% Similarity=0.181 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~ 149 (269)
+.+..+|||+|||+|.++..+++. ..+|+++|+|+++++.|++++.... -.+++++.+|+.+. . ..++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeChHHhhhhhhhhcCC
Confidence 345689999999999999999885 3699999999999999999875432 24699999999765 1 2457
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||+|++|.+-.. ..+.++.+.+ ++|++++.+.+.
T Consensus 368 fD~Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 368 FDKVLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCEEEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEeC
Confidence 999999865331 2356655554 789998888774
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=88.16 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=89.3
Q ss_pred hHHHHH-hcCCCCCCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccc-----cccCCCCcEE
Q 035593 64 TYFDAF-ATLPPILPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEK-----LEKSYPDRLF 135 (269)
Q Consensus 64 ~y~~~~-~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~-----~~~~~~~rv~ 135 (269)
.|...| +..+.+.|..+.|++|.|+|.++..+.... ++....+||.-|++++.+++++...- ...+...++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 344444 233457899999999999999998887643 34556999999999999998864211 0112467899
Q ss_pred EEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 136 VYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 136 ~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++++|++.. ....+||.|.+.+..+ +.-+++...|++||.+++-..
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEeec
Confidence 999999997 7778999999975432 455777888999999988664
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=87.55 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD 151 (269)
+.|..+|||||||.|.+..+|.+. .+++..+||+|++-+..|.++ .+.++++|+.+- .++++||
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCCcc
Confidence 567899999999999999999885 689999999999998888765 378999999875 6788999
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.||+.- .........+.++++.+. |...++.+.+
T Consensus 78 ~VIlsq----tLQ~~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 78 YVILSQ----TLQAVRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred EEehHh----HHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence 999731 111112234666666544 5555555543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-09 Score=87.61 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=76.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccC---------------------------
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKS--------------------------- 129 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~--------------------------- 129 (269)
.++.+|||||-+|.++..+++.+....|.+||||+..++.|+++...+.....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 47899999999999999999999888999999999999999998754321000
Q ss_pred ----------CCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCC--CCcHHHHHHHHhhccCCcEEEEE
Q 035593 130 ----------YPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSE--LEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 130 ----------~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~--l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+..+-..|.. ......||+|++-.-..+....+ --...||+++.+.|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0001111111111 12456899998643322211111 11368999999999999999984
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-09 Score=88.15 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------cc
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~ 146 (269)
+..++++|+||.=+|..+..++...| +.+|+++|+|++..+++.+...... ...+++++++++.+. ..
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccceeeeeecchhhhHHHHHhcCC
Confidence 34689999999999999998888888 6899999999999999987654333 357899999999875 24
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+.||.+|+|+.... -..+++++.+.|++||+++++
T Consensus 147 ~~tfDfaFvDadK~n-------Y~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 147 SGTFDFAFVDADKDN-------YSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCceeEEEEccchHH-------HHHHHHHHHhhcccccEEEEe
Confidence 678999999987543 238999999999999999985
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-09 Score=99.34 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=75.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC----CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILDLY----PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~----p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.||+||||+|.+....++.. ...+|++||.||..+...++....+.| +.+|+++.+|++++..+++.|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~lpekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVELPEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCHSS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCCCCceeEE
Confidence 4679999999999998777642 246999999999887766554333333 36899999999999888899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
++..... ...+-...|.+....+.|||+|+++
T Consensus 263 VSElLGs--fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGS--FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BT--TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCC--ccccccCHHHHHHHHhhcCCCCEEe
Confidence 9877643 2222245788999999999999886
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=85.74 Aligned_cols=111 Identities=14% Similarity=0.031 Sum_probs=82.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc-------cccCCCCcEEEEEcccccccc---
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK-------LEKSYPDRLFVYVGNALKASL--- 146 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~-------~~~~~~~rv~~~~~D~~~~~~--- 146 (269)
++.+||+.|||.|.-+.+|++ -+.+|++||+++..++.+.+..++.. .......+++++++|.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 468999999999999999998 47899999999999999877443211 001124579999999999832
Q ss_pred -CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 -KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 -~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.++||+|+--++- ...++.+ ...+.+.+.+.|+|||.+++-..
T Consensus 121 ~~~~fD~VyDra~~-~Alpp~~-R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAY-IALPNDL-RTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhH-hcCCHHH-HHHHHHHHHHHhCCCcEEEEEEE
Confidence 3589998732221 1233332 56899999999999998776554
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-09 Score=88.19 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+...|||+-||-|.++..++++.+..+|.++|+||..++..+++..++.+ ..++.++.+|++++.....+|.|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLPEGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG---TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcCccccCEEE
Confidence 6689999999999999999999876788999999999999999999876653 468999999999995588999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
++.+.. +.+|+..+.+.+++||++.
T Consensus 175 m~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred ECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 976543 4689999999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-09 Score=95.42 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=82.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc-CCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL-KDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~-~~~yD~I~~d 156 (269)
..+|||++||+|..+..++...+..+|+++|+||..++.+++++..+. -.+++++.+|+..+.. .++||+|++|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 358999999999999999876655699999999999999999986553 2357799999987622 5679999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+.. ..+|+..+.+.++++|++.+..
T Consensus 133 P~Gs--------~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PFGS--------PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCCC--------cHHHHHHHHHHhcCCCEEEEEe
Confidence 8632 3578899888899999998874
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=84.67 Aligned_cols=106 Identities=19% Similarity=-0.016 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c---c-CCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S---L-KDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~---~-~~~y 150 (269)
.+..++||++||+|.++.+++.+. ..+|++||+|+..++.+++++.... ...+++++.+|+.++ . . ...|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~----~~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLK----SGEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhC----CcccEEEEehhHHHHHHHhhccCCCc
Confidence 357899999999999999999853 3489999999999999999875432 124799999999775 2 1 2358
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHh--hccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQ--CLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~--~L~pgG~l~~~~~ 191 (269)
|+|+.|.+-.. . ...+.++.+.+ .|+++|++++...
T Consensus 123 dvv~~DPPy~~----~-~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 123 NVIYLDPPFFN----G-ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred eEEEECcCCCC----C-cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 99999865332 1 13455555543 6899999888664
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=95.81 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~ 149 (269)
+.+..+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++.... -.+++++.+|+.++ . ...+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCHHHHHHHHHhcCCC
Confidence 345689999999999999999874 4589999999999999999875433 24799999999875 1 2457
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
||+|++|.+... ...++++.+.+ |+|++++.+.+
T Consensus 363 ~D~vi~dPPr~G------~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 363 PDVLLLDPPRKG------CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCEEEECcCCCC------CCHHHHHHHHh-cCCCEEEEEcC
Confidence 999999865321 13677777664 88988776654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=93.85 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=78.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-cCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-LKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~yD~I~ 154 (269)
+..+|||+|||+|.++..++. ++.+|++||+|+.+++.|++++.... -.+++++.+|+.++ . ..++||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIACAQQSAQMLG-----LDNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHHHHhcCCCCCEEE
Confidence 467899999999999999986 45799999999999999999875432 23799999999876 2 235699999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|.+-.. ...++++.+. .++|++++.+.+.
T Consensus 306 ~DPPr~G------~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 306 VNPPRRG------IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ECCCCCC------CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 9865321 1356666665 4799998888773
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=87.30 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+..+|||||||+|.++..+++. +.+|+++|+++.+++.|++++.... ...+++++.+|.. ...+.||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~--~~~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG----LAGNITFEVGDLE--SLLGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcCch--hccCCcCEEEE
Confidence 45789999999999999999874 4679999999999999999875322 1247899999932 23568999986
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRI 186 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l 186 (269)
...-. ..+. -.....++.+.+.+++++++
T Consensus 134 ~~~l~-~~~~-~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 134 LDVLI-HYPQ-EDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred cchhh-cCCH-HHHHHHHHHHHhhcCCeEEE
Confidence 42111 0111 11246777777766544433
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=85.26 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=88.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
+.-|||||||+|..+..+.. ++-..++|||+|.|+++|.+.- +. -.++.+|+-+- ..++.||.+|+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e-~e---------gdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERE-LE---------GDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhh-hh---------cCeeeeecCCCCCCCCCccceEEE
Confidence 67799999999999999887 6789999999999999998631 11 35777887654 67789999875
Q ss_pred cC-----CCCCC--CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHH-HHHHHHhcCceEEEE
Q 035593 156 DL-----FSKGS--LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATL-KAMHKVFGKKLYVLS 227 (269)
Q Consensus 156 d~-----~~~~~--~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~F~~~v~~~~ 227 (269)
-. ++... ..+..-...||..++.+|++|+..+++++... +.....+. +++++-|+.- .++.
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen----------~~q~d~i~~~a~~aGF~GG-lvVd 187 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN----------EAQIDMIMQQAMKAGFGGG-LVVD 187 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc----------hHHHHHHHHHHHhhccCCc-eeee
Confidence 21 11110 11111224789999999999999999997542 33444444 4555568643 3443
Q ss_pred c
Q 035593 228 L 228 (269)
Q Consensus 228 ~ 228 (269)
.
T Consensus 188 ~ 188 (270)
T KOG1541|consen 188 W 188 (270)
T ss_pred c
Confidence 3
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-08 Score=89.83 Aligned_cols=104 Identities=10% Similarity=-0.022 Sum_probs=68.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|.++..+++. +.+|+++|+++.|++.|++++...........++++..+|..+. .++||+|++-
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 4679999999999999999973 67999999999999999998642100000124678888887654 5789999853
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
..-. ..+.. ...++++.+.+ +.++|+++
T Consensus 220 ~vL~-H~p~~-~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLI-HYPQD-KADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEE-ecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence 1110 11111 11246666664 56666654
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-08 Score=81.44 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=73.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
..+.|+|+|||+|.++..++- +...+|++||+||+.+++|+++.+.- ..++.++++|..++ ..++|.++++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~--~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF--RGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc--CCccceEEEC
Confidence 577899999999999998876 45579999999999999999987531 35799999999887 4578899988
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhc
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCL 180 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L 180 (269)
.+-... ..+ ....|+..+.+.-
T Consensus 116 PPFG~~-~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 116 PPFGSQ-RRH-ADRPFLLKALEIS 137 (198)
T ss_pred CCCccc-ccc-CCHHHHHHHHHhh
Confidence 654422 234 4678888887764
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-08 Score=82.72 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=83.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----c--ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----A--SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~--~~~~~y 150 (269)
.+..+||+|||+|+++..+++..|..+|++||.++..+.+|.++..... ...++.+++-+... - ...+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~----l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK----LSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh----hcCceEEEecccccccccccccccCce
Confidence 3557999999999999999998999999999999999999998874322 13588888655443 2 345799
Q ss_pred eEEEEcCCCCCC--C----------CCC--C--------CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 151 SGILVDLFSKGS--L----------LSE--L--------EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 151 D~I~~d~~~~~~--~----------~~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+|+++.+--.. . .+. | ....++..+.++|+|||.+.++....
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 999987421100 0 111 1 11357778889999999999998744
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.1e-09 Score=87.04 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=77.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
.+.++|+|||+|..++.++.++. +|+++|++++|+++|++++.... .....+....++..+ ..+++.|+|++-
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y----~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTY----CHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCccc----ccCCccccccccccccCCCcceeeehhh
Confidence 34899999999988888888653 79999999999999999875321 122344444555555 457899999852
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCc-EEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGG-RIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG-~l~~~~~~ 192 (269)
- ....+..++|++.+++.|++.| +++++...
T Consensus 108 q-----a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 108 Q-----AVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred h-----hHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 1 1223556899999999998866 88888766
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-08 Score=88.43 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc-ccccCCCCcEEEEE-cccccc-----ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE-KLEKSYPDRLFVYV-GNALKA-----SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~-~~~~~~~~rv~~~~-~D~~~~-----~~~~~ 149 (269)
+..++||||||+|.+...+..+.++.+++++|||+..++.|++++..+ .+ ..+++++. .|.... ...++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhcccccCCc
Confidence 357999999999999888887778899999999999999999998655 22 35788865 333332 23568
Q ss_pred eeEEEEcCC
Q 035593 150 FSGILVDLF 158 (269)
Q Consensus 150 yD~I~~d~~ 158 (269)
||+|+++.+
T Consensus 190 fDlivcNPP 198 (321)
T PRK11727 190 FDATLCNPP 198 (321)
T ss_pred eEEEEeCCC
Confidence 999999754
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-08 Score=86.30 Aligned_cols=114 Identities=17% Similarity=0.062 Sum_probs=80.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~ 152 (269)
..++||++=|=+|+.+.+++. ....+|+.||+|...++.|++++.++.. +..+++++.+|+.++ ...++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHHHhcCCCCCE
Confidence 578999999999999998876 2334899999999999999999877642 246899999999986 34679999
Q ss_pred EEEcCCCCCCCCCCC--CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 153 ILVDLFSKGSLLSEL--EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 153 I~~d~~~~~~~~~~l--~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
||+|+++-......+ .-.+.+..+.+.|+|||.+++...+..
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 999976431111111 013677888899999999887666553
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.6e-08 Score=83.28 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=66.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||+|.++..+++. ..+|+++|+|+.+++.+++.+.. .++++++++|+.++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~~ 87 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccccC
Confidence 4445544434557889999999999999999985 46899999999999999988742 25799999999886
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
.. ..||.|+.+++
T Consensus 88 ~~-~~~d~Vv~NlP 100 (258)
T PRK14896 88 DL-PEFNKVVSNLP 100 (258)
T ss_pred Cc-hhceEEEEcCC
Confidence 32 24899998643
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-08 Score=87.27 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=63.3
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.++.+|||||||+|.++..++++.+ +|+++|+|+++++.+++.+. .++++++++|+.++.
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~--------~~~v~~i~~D~~~~~ 100 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA--------EDNLTIIEGDALKVD 100 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc--------cCceEEEEChhhcCC
Confidence 34444333455678999999999999999998743 89999999999999998763 257999999999873
Q ss_pred cCCC-eeEEEEcC
Q 035593 146 LKDG-FSGILVDL 157 (269)
Q Consensus 146 ~~~~-yD~I~~d~ 157 (269)
.... +|.|+.+.
T Consensus 101 ~~~~~~~~vv~Nl 113 (272)
T PRK00274 101 LSELQPLKVVANL 113 (272)
T ss_pred HHHcCcceEEEeC
Confidence 2222 58888753
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=90.21 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=83.5
Q ss_pred CcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 79 GPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
.+|||+.+|+|..+..++...++ .+|+++|+||..++.++++..++. -.+++++.+|+..+ ....+||+|++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 58999999999999999886544 599999999999999999986553 23689999999988 33468999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|.|.. ..+|+..+.+.++++|++.+..
T Consensus 121 DPfGs--------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPFGT--------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCC--------cHHHHHHHHHhcccCCEEEEEe
Confidence 98742 2479999999999999999874
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.4e-08 Score=85.82 Aligned_cols=100 Identities=21% Similarity=0.340 Sum_probs=73.1
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||.|.++..+++. ..+|+++|+|+.+++.+++.+.... ..++++++.+|+...
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~----~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP----LASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC----CCCcEEEEECCHhhh
Confidence 3444544434567889999999999999999984 5689999999999999999874321 135899999999876
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHH
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLR 177 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~ 177 (269)
.. ..||.|+.+++ ....++..++.+.
T Consensus 98 ~~-~~~d~VvaNlP------Y~Istpil~~ll~ 123 (294)
T PTZ00338 98 EF-PYFDVCVANVP------YQISSPLVFKLLA 123 (294)
T ss_pred cc-cccCEEEecCC------cccCcHHHHHHHh
Confidence 32 36899987543 2334555555553
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-09 Score=90.08 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
-+++||||||||..+..|... ..++++||||+.|++.|.++-.. =++.++|+..| ..+++||+|.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y----------D~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY----------DTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch----------HHHHHHHHHHHhhhccCCcccchh
Confidence 579999999999999998763 56899999999999999887322 15566777767 5678999997
Q ss_pred E-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 V-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
. |... +.. ..+.+|-.+...|+|||.|++.+-.-
T Consensus 194 AaDVl~---YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 194 AADVLP---YLG--ALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhhHHH---hhc--chhhHHHHHHHhcCCCceEEEEeccc
Confidence 4 2111 111 13678999999999999999987543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-08 Score=83.34 Aligned_cols=109 Identities=20% Similarity=0.149 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
.+..++||+-+|+|+++.+.+.+ ...+|+.||.|+..++..++++..-. ...+++++.+|+..+ ....+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~----~~~~~~v~~~d~~~~l~~~~~~~~~f 115 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG----LEDKIRVIKGDAFKFLLKLAKKGEKF 115 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHHHHHHHHCTS-E
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC----CCcceeeeccCHHHHHHhhcccCCCc
Confidence 46889999999999999998874 35699999999999999999874221 124799999998876 246899
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHH--hhccCCcEEEEEecCC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLR--QCLRKGGRIMVNVGGS 193 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~--~~L~pgG~l~~~~~~~ 193 (269)
|+|++|++-.. .....+.++.+. ..|+++|++++-....
T Consensus 116 DiIflDPPY~~----~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 116 DIIFLDPPYAK----GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEEE--STTS----CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eEEEECCCccc----chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99999854221 111256777776 7899999999987544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=81.07 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=77.0
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.+...|||||+|.|.++..|+++ ..+|++||+|+.+++..++.+.. .++++++++|+..+.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaLk~d 89 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDALKFD 89 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchhcCc
Confidence 455554445566889999999999999999984 56899999999999999998862 368999999999984
Q ss_pred cCC--CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccC
Q 035593 146 LKD--GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRK 182 (269)
Q Consensus 146 ~~~--~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p 182 (269)
.+. .++.|+.+++ ....++=.++.+......
T Consensus 90 ~~~l~~~~~vVaNlP------Y~Isspii~kll~~~~~~ 122 (259)
T COG0030 90 FPSLAQPYKVVANLP------YNISSPILFKLLEEKFII 122 (259)
T ss_pred chhhcCCCEEEEcCC------CcccHHHHHHHHhccCcc
Confidence 443 7888987643 334455555555555544
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-07 Score=84.98 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=88.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
..|+.+|||+++|.|+=+.+++.... ...|+++|+++.-++..++++..-. -.++.+...|+..+ .....||
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhhhhhchhhcC
Confidence 35788999999999999999998765 4699999999999999988764211 24689999999876 3456799
Q ss_pred EEEEcCCCCCC-CC---C-C--C-----------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKGS-LL---S-E--L-----------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~~-~~---~-~--l-----------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++|++-+.. +. + . . ...++++.+.+.|||||+|+....+..
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 99999865522 21 0 0 0 125789999999999999988877654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=88.77 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=87.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
...+||||||.|.....+++.+|+..+.++|+....+..|.+.....+ -.++.++.+|+..+ ..+.+.|.|+
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 578999999999999999999999999999999998877766542221 24688898887644 4567899999
Q ss_pred EcCCCCCCC----CCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSL----LSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~----~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+..++++.- -..+...+|++.+.+.|+|||.+-+-.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 988777532 124778999999999999999998765
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-08 Score=87.82 Aligned_cols=126 Identities=16% Similarity=0.098 Sum_probs=89.8
Q ss_pred eeeeeecCCcccchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCC
Q 035593 51 IHSISYLFRSLTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSY 130 (269)
Q Consensus 51 ~qs~~~~~~~l~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~ 130 (269)
+|-+|..+..-...|...+.....+...+.|||+|||+|.++.+.++.. ..+|.+||-+. +++.|++-+..+. .
T Consensus 34 iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N~----~ 107 (346)
T KOG1499|consen 34 IHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDNG----L 107 (346)
T ss_pred HHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhcC----c
Confidence 4444444444456677777666567789999999999999999999863 67999999965 5599888775444 2
Q ss_pred CCcEEEEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHH----HHHHhhccCCcEEE
Q 035593 131 PDRLFVYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTW----EKLRQCLRKGGRIM 187 (269)
Q Consensus 131 ~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~----~~~~~~L~pgG~l~ 187 (269)
...++++.+...+. -+.++.|+|++.-.. ..|.-+..+ -.=-+.|+|||.+.
T Consensus 108 ~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG-----y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 EDVITVIKGKVEDIELPVEKVDIIVSEWMG-----YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceEEEeecceEEEecCccceeEEeehhhh-----HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 45799999999998 345899999975332 222222222 22337799999875
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-07 Score=81.05 Aligned_cols=96 Identities=23% Similarity=0.341 Sum_probs=69.2
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.+..+|||||||+|.++..++++. .+++++|+|+.+++.+++.+.. .++++++.+|+..+.
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhcCC
Confidence 3444433344567899999999999999999865 3699999999999999988742 357999999998873
Q ss_pred cCCCee---EEEEcCCCCCCCCCCCCcHHHHHHHHh
Q 035593 146 LKDGFS---GILVDLFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 146 ~~~~yD---~I~~d~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
.. .|| +|+.+++ .+. +.+++..+..
T Consensus 89 ~~-~~d~~~~vvsNlP------y~i-~~~il~~ll~ 116 (253)
T TIGR00755 89 LP-DFPKQLKVVSNLP------YNI-SSPLIFKLLE 116 (253)
T ss_pred hh-HcCCcceEEEcCC------hhh-HHHHHHHHhc
Confidence 22 456 7776532 222 3455555554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-07 Score=78.24 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=105.1
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCC
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKD 148 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~ 148 (269)
..+.|...||+-|.|+|+++.++++.. |-.++...|....-.+.|++.|....+ ++++++++.|.... ....
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEeecccCCcccccc
Confidence 346689999999999999999999865 678999999999999999999965543 47899999998765 3467
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH-HhcCceEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK-VFGKKLYVLS 227 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~F~~~v~~~~ 227 (269)
.+|+|++|+..++...| .++.+||.+|.-++++ ++|- .+.++..+.|++ -|- .+..++
T Consensus 177 ~aDaVFLDlPaPw~AiP---------ha~~~lk~~g~r~csF-SPCI----------EQvqrtce~l~~~gf~-~i~~vE 235 (314)
T KOG2915|consen 177 KADAVFLDLPAPWEAIP---------HAAKILKDEGGRLCSF-SPCI----------EQVQRTCEALRSLGFI-EIETVE 235 (314)
T ss_pred ccceEEEcCCChhhhhh---------hhHHHhhhcCceEEec-cHHH----------HHHHHHHHHHHhCCCc-eEEEEE
Confidence 89999999987753333 3445788887654544 4652 346667777776 363 566665
Q ss_pred cCC-CCceEEEEecCCCC
Q 035593 228 LGN-RKDDSLIALTGELP 244 (269)
Q Consensus 228 ~~~-~~n~v~~~~~~~~~ 244 (269)
+-. ..|. +...+.+..
T Consensus 236 v~~~qk~~-V~~~~~~~~ 252 (314)
T KOG2915|consen 236 VLLVQKNG-VKTVKLALE 252 (314)
T ss_pred eehhhhhc-eeeeccchh
Confidence 443 3333 444444443
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=86.01 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=75.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc----------
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL---------- 146 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~---------- 146 (269)
+.+|||+|||+|.++..+++.. .+|++||+++++++.|++++..+. -.+++++.+|+.++ ..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~~~ 270 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRMSAEEFTQAMNGVREFRRL 270 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEcCHHHHHHHHhhccccccc
Confidence 3579999999999999888854 489999999999999999886543 24699999999886 21
Q ss_pred C------CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 K------DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 ~------~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
. .+||+|++|.+... ...++++.+.+ |++++.+.+.
T Consensus 271 ~~~~~~~~~~d~v~lDPPR~G------~~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 271 KGIDLKSYNCSTIFVDPPRAG------LDPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred cccccccCCCCEEEECCCCCC------CcHHHHHHHHc---CCcEEEEEcC
Confidence 1 24899999976432 13566666654 7888888774
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-08 Score=87.89 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=84.2
Q ss_pred CCCcEEEEcCcccH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcC-cccc----ccCCCCcEEEEEcccccc-----c
Q 035593 77 PPGPIGILGFGAGS-AARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKL----EKSYPDRLFVYVGNALKA-----S 145 (269)
Q Consensus 77 ~~~~VL~iG~G~G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~----~~~~~~rv~~~~~D~~~~-----~ 145 (269)
++.+|||||||-|. +.++... .-.+++++||+++.++.|+++.. +... .....-...++.+|...- .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999555 5555443 45699999999999999998871 1100 000123577888988753 1
Q ss_pred c--CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH------
Q 035593 146 L--KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK------ 217 (269)
Q Consensus 146 ~--~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 217 (269)
. ..+||+|-+-..-|-.....-..+.+++.+.++|+|||+++..+.+. . .++..|++
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~-----------~----~i~~~l~~~~~~~~ 204 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS-----------D----EIVKRLREKKSNSE 204 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-----------H----HHHCCHHC-EEECC
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH-----------H----HHHHHHHhhccccc
Confidence 2 35999997643222111111122469999999999999999988543 2 23343443
Q ss_pred --HhcCceEEEEcCCC
Q 035593 218 --VFGKKLYVLSLGNR 231 (269)
Q Consensus 218 --~F~~~v~~~~~~~~ 231 (269)
.|++.++.+....+
T Consensus 205 ~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 205 KKKFGNSVYSIEFDSD 220 (331)
T ss_dssp CSCSETSSEEEEESCC
T ss_pred ccccCCccEEEEeccc
Confidence 46777777766555
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=85.86 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=74.4
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc-----------
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL----------- 146 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~----------- 146 (269)
.+|||++||+|.++..+++.. .+|++||+++.+++.|+++...+. -.+++++.+|+.++ ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 579999999999999888753 489999999999999999875443 24799999999876 11
Q ss_pred -----CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 -----KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 -----~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+||+|++|.+-.. ...+.++.+.+ +++++.+.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G------~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAG------LDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCCC------CcHHHHHHHHc---cCCEEEEEeC
Confidence 125999999976421 24566666654 6788777773
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=79.07 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=65.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.+..+|||||||+|.++..+++. .+..++++|+++++++.|++. +++++.+|+.+. ..+++||+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~sfD~ 78 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKSFDY 78 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCCcCE
Confidence 36779999999999999988764 467889999999999998652 367788888653 34568999
Q ss_pred EEEcCCCCCCCCCCC-CcHHHHHHHHhhccC
Q 035593 153 ILVDLFSKGSLLSEL-EDPNTWEKLRQCLRK 182 (269)
Q Consensus 153 I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~p 182 (269)
|++...- .++ ....+++++.+.+++
T Consensus 79 Vi~~~~l-----~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 79 VILSQTL-----QATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEEhhHh-----HcCcCHHHHHHHHHHhCCe
Confidence 9985321 122 245778888776654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.3e-06 Score=69.74 Aligned_cols=134 Identities=20% Similarity=0.346 Sum_probs=91.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHH----HHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSV----IKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~----~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
.+.+..+||-||.++|+...++..... ...|.+||.+|.. +++|+++ +++--+.+||+.-
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----------~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----------PNIIPILEDARHPEKYR 138 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----------TTEEEEES-TTSGGGGT
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----------CceeeeeccCCChHHhh
Confidence 466789999999999999999998654 7899999999954 5566654 5688899999964
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCce
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKL 223 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v 223 (269)
..-+..|+|+.|...+. ..+-+...+...||+||.+++.+-..+- +..+++...+.+..++|++. |. -.
T Consensus 139 ~lv~~VDvI~~DVaQp~------Qa~I~~~Na~~fLk~gG~~~i~iKa~si---D~t~~p~~vf~~e~~~L~~~~~~-~~ 208 (229)
T PF01269_consen 139 MLVEMVDVIFQDVAQPD------QARIAALNARHFLKPGGHLIISIKARSI---DSTADPEEVFAEEVKKLKEEGFK-PL 208 (229)
T ss_dssp TTS--EEEEEEE-SSTT------HHHHHHHHHHHHEEEEEEEEEEEEHHHH----SSSSHHHHHHHHHHHHHCTTCE-EE
T ss_pred cccccccEEEecCCChH------HHHHHHHHHHhhccCCcEEEEEEecCcc---cCcCCHHHHHHHHHHHHHHcCCC-hh
Confidence 34569999999976442 1345777778899999988876522111 11123466788888999984 74 34
Q ss_pred EEEEc
Q 035593 224 YVLSL 228 (269)
Q Consensus 224 ~~~~~ 228 (269)
-.+..
T Consensus 209 e~i~L 213 (229)
T PF01269_consen 209 EQITL 213 (229)
T ss_dssp EEEE-
T ss_pred eEecc
Confidence 44443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-06 Score=69.89 Aligned_cols=131 Identities=13% Similarity=0.160 Sum_probs=93.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++-+|+||||+|..+.+|++.. |+....+.||||..++..++-...+ .-++.+++.|...--.+++.|+++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n------~~~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN------RVHIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc------CCccceeehhHHhhhccCCccEEEEC
Confidence 7789999999999999998864 5789999999999999877765433 35689999998877444999999976
Q ss_pred CCCCCCCCCCC-----------------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-
Q 035593 157 LFSKGSLLSEL-----------------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV- 218 (269)
Q Consensus 157 ~~~~~~~~~~l-----------------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 218 (269)
..--....... .+..++..+-..|.|.|++.++...... ..++++.++.-
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~------------p~ei~k~l~~~g 185 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK------------PKEILKILEKKG 185 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC------------HHHHHHHHhhcc
Confidence 42211111111 1346778888999999999988865421 34666655553
Q ss_pred hcCceEEE
Q 035593 219 FGKKLYVL 226 (269)
Q Consensus 219 F~~~v~~~ 226 (269)
|...+.+.
T Consensus 186 ~~~~~~~~ 193 (209)
T KOG3191|consen 186 YGVRIAMQ 193 (209)
T ss_pred cceeEEEE
Confidence 54334443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-07 Score=80.89 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
..+-|||+|||+|.+..+.+.. ...+|.+||.+ +|.+.|++...-+. ..+|+++|.|...+...+++.|+||+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~----~~~rItVI~GKiEdieLPEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNN----LADRITVIPGKIEDIELPEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCC----ccceEEEccCccccccCchhccEEEec
Confidence 4788999999999999998874 46699999995 59999998765332 257999999999999889999999975
Q ss_pred CCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...- .|.. .|-|-.+++.|+|.|.+.-.+
T Consensus 251 PMG~-----mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 251 PMGY-----MLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred cchh-----hhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 4321 2222 356667789999999876443
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-07 Score=80.92 Aligned_cols=124 Identities=17% Similarity=0.075 Sum_probs=94.8
Q ss_pred ccchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-
Q 035593 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG- 139 (269)
Q Consensus 61 l~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~- 139 (269)
+...+.+.|+.+..+.++..|||==||||++..++.- -++++.+.|+|..|++-|+.++.... -....+...
T Consensus 181 ~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~~~~ 253 (347)
T COG1041 181 MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYG-----IEDYPVLKVL 253 (347)
T ss_pred cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhC-----cCceeEEEec
Confidence 3445777887666677889999999999999998764 48999999999999999999886432 234656666
Q ss_pred ccccc-ccCCCeeEEEEcCCCCCCCC-C-C-C--CcHHHHHHHHhhccCCcEEEEEec
Q 035593 140 NALKA-SLKDGFSGILVDLFSKGSLL-S-E-L--EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 140 D~~~~-~~~~~yD~I~~d~~~~~~~~-~-~-l--~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+... ....++|.|+.|.+-..+.- . . + ...++++.+.+.|++||++++...
T Consensus 254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99887 34447999999976543221 1 1 1 135899999999999999999774
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=9e-07 Score=77.30 Aligned_cols=107 Identities=19% Similarity=0.311 Sum_probs=67.0
Q ss_pred CCcEEEEcCcccHHHHHHHH--HCCCceEEEEECChHHHHHHHHhcC-ccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILD--LYPEAVIHGWELDPSVIKVAREFFA-LEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~--~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
|++|+.||+|.=-++..+.. +.+++.|+++|+||+.++.|++-.. ..++ ..+++++.+|+.+. ..-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhccccccccCCEE
Confidence 67999999997766655553 3457899999999999999998764 2222 46899999999877 445799999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++.+.-... .-.-.+.++.+.+.++||..+++-..
T Consensus 197 ~lAalVg~~---~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 197 FLAALVGMD---AEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp EE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred EEhhhcccc---cchHHHHHHHHHhhCCCCcEEEEecc
Confidence 986543210 11247999999999999999988643
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-07 Score=75.17 Aligned_cols=122 Identities=17% Similarity=0.085 Sum_probs=81.5
Q ss_pred chHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCce---------EEEEECChHHHHHHHHhcCccccccCCCCc
Q 035593 63 NTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAV---------IHGWELDPSVIKVAREFFALEKLEKSYPDR 133 (269)
Q Consensus 63 ~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~---------v~~vEidp~~~~~a~~~~~~~~~~~~~~~r 133 (269)
......|+.+....+...+||--||+|++..+.+...++.. +.++|+|+++++.|++++.... ....
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag----~~~~ 89 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG----VEDY 89 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGG
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----cCCc
Confidence 34455555444456788999999999999998877666655 9999999999999999874322 1346
Q ss_pred EEEEEccccccc-cCCCeeEEEEcCCCCCCCCC----CCCcHHHHHHHHhhccCCcEEEE
Q 035593 134 LFVYVGNALKAS-LKDGFSGILVDLFSKGSLLS----ELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 134 v~~~~~D~~~~~-~~~~yD~I~~d~~~~~~~~~----~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+.+...|+.++. ..+.+|+|++|.+-...... .-...++++.+++.|++..++++
T Consensus 90 i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 90 IDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred eEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 999999999984 67799999999754432221 11124678888888988334433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.6e-07 Score=72.39 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=61.4
Q ss_pred EEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC
Q 035593 105 HGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG 183 (269)
Q Consensus 105 ~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg 183 (269)
+++|++++|++.|+++....... ...+++++++|+.+. ..+++||+|++...-. .. ....+++++++++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~-~~---~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR-NV---VDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechhhCCCCCCCeeEEEecchhh-cC---CCHHHHHHHHHHHcCcC
Confidence 48999999999998765422100 124799999999988 5667899999743211 11 23468999999999999
Q ss_pred cEEEEEecCC
Q 035593 184 GRIMVNVGGS 193 (269)
Q Consensus 184 G~l~~~~~~~ 193 (269)
|.+++..++.
T Consensus 75 G~l~i~d~~~ 84 (160)
T PLN02232 75 SRVSILDFNK 84 (160)
T ss_pred eEEEEEECCC
Confidence 9999877654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5e-07 Score=79.89 Aligned_cols=76 Identities=29% Similarity=0.368 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccC---C
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLK---D 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~---~ 148 (269)
..|...++|.+||.|..+..+++..+ +.+|+++|+||++++.|++.+.- ..|++++++|..++ ... .
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCHHHHHHHHHcCCC
Confidence 35677999999999999999999886 78999999999999999987632 25899999999987 122 2
Q ss_pred CeeEEEEcC
Q 035593 149 GFSGILVDL 157 (269)
Q Consensus 149 ~yD~I~~d~ 157 (269)
++|.|++|+
T Consensus 90 ~vDgIl~DL 98 (296)
T PRK00050 90 KVDGILLDL 98 (296)
T ss_pred ccCEEEECC
Confidence 799999875
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.1e-07 Score=73.13 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=83.1
Q ss_pred cCCCCCC--CCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---
Q 035593 71 TLPPILP--PGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--- 144 (269)
Q Consensus 71 ~~~~l~~--~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--- 144 (269)
.+..+.+ +.+||||||+.|+.+..++++. +..+|++||+.+. .+ .+.+..+.+|....
T Consensus 15 ~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~-----~~~~~~i~~d~~~~~~~ 78 (181)
T PF01728_consen 15 KFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP-----LQNVSFIQGDITNPENI 78 (181)
T ss_dssp TTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS------TTEEBTTGGGEEEEHS
T ss_pred HCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc-----ccceeeeecccchhhHH
Confidence 4443444 4899999999999999999865 4689999999885 11 23466666666542
Q ss_pred ------c--cCCCeeEEEEcCCCCCCCCC---CC----CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHH
Q 035593 145 ------S--LKDGFSGILVDLFSKGSLLS---EL----EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVME 209 (269)
Q Consensus 145 ------~--~~~~yD~I~~d~~~~~~~~~---~l----~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (269)
. ..+++|+|++|......-.. +. .....+..+.+.|+|||.+++-++... . . .
T Consensus 79 ~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~----------~-~-~ 146 (181)
T PF01728_consen 79 KDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP----------E-I-E 146 (181)
T ss_dssp HHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST----------T-S-H
T ss_pred HhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc----------c-H-H
Confidence 1 23699999999833211110 11 112455566688999999999887642 1 2 3
Q ss_pred HHHHHHHHHhcCceEEEEcC
Q 035593 210 ATLKAMHKVFGKKLYVLSLG 229 (269)
Q Consensus 210 ~~~~~l~~~F~~~v~~~~~~ 229 (269)
.++..++..|. .+.+++..
T Consensus 147 ~~~~~l~~~F~-~v~~~Kp~ 165 (181)
T PF01728_consen 147 ELIYLLKRCFS-KVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHH-HEEEEE-T
T ss_pred HHHHHHHhCCe-EEEEEECc
Confidence 78888999995 78887644
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=76.51 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHH---HHHhcCccccccCCCCcEEEEEccccc-cccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKV---AREFFALEKLEKSYPDRLFVYVGNALK-ASLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~---a~~~~~~~~~~~~~~~rv~~~~~D~~~-~~~~~~yD~ 152 (269)
..++|||||||.|...-.++++ ....|+++|.++...-. ++++.+. +.++..+ ..+.+ ....+.||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~-------~~~~~~l-plgvE~Lp~~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ-------DPPVFEL-PLGVEDLPNLGAFDT 185 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC-------CccEEEc-CcchhhccccCCcCE
Confidence 4889999999999999888874 34579999999987644 3444432 2233333 22322 333678999
Q ss_pred EEEcCCCCCCCCCCCC-cHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELE-DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~-~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||+- ++..|.. ..+.++.+++.|++||.+++...
T Consensus 186 VF~M-----GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 186 VFSM-----GVLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred EEEe-----eehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 9963 2333332 35899999999999999997543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.6e-07 Score=72.96 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
..++++||+||||+|..+..+++..+..+|++-|.++ +++.++.+...+.. ....++++..-|-.+. ....+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccccc
Confidence 4568999999999999999998865678999999999 99999888754320 1145677777665432 23568
Q ss_pred eeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 150 FSGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 150 yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||+|+. |+. +.+ -..+.+++.+.+.|+++|.+++...
T Consensus 120 ~D~IlasDv~----Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 120 FDVILASDVL----YDE-ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp BSEEEEES------S-G-GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred CCEEEEeccc----chH-HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999985 321 111 2246899999999999998655543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-06 Score=71.45 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=83.3
Q ss_pred hHHHHHhcCCCCCCCC-cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHH---HhcCccccccCCCCcEEEEEc
Q 035593 64 TYFDAFATLPPILPPG-PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAR---EFFALEKLEKSYPDRLFVYVG 139 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~-~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~---~~~~~~~~~~~~~~rv~~~~~ 139 (269)
.+.+.+..++.+.... +++|||.|+|.=+.-++-.+|+.+++.||....=+...+ +.+++ ++++++++
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L--------~nv~v~~~ 105 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL--------SNVEVING 105 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---------SSEEEEES
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC--------CCEEEEEe
Confidence 3445555555555433 899999999988877777789999999999987655444 44554 36999999
Q ss_pred cccccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 140 NALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 140 D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+.+.....+||+|++=++.+ ...+++-+...|++||.+++.-.
T Consensus 106 R~E~~~~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 106 RAEEPEYRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -HHHTTTTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred eecccccCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 998855678999999877654 36899999999999999988664
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-07 Score=76.53 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=80.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
+.+||+||||.|...--+++..|+ ..|.++|.+|..+++.+++-+..+ .++...+.|...- ...+..
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhccCCCCcCcc
Confidence 448999999999999999987776 899999999999999999876542 4566666665432 346788
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|.|.+-..-. .+++. .....+..+.+.|||||.+++--++..
T Consensus 146 D~it~IFvLS-Ai~pe-k~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 146 DIITLIFVLS-AIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred ceEEEEEEEe-ccChH-HHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 9886431111 22221 135789999999999999999877653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.8e-07 Score=78.46 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=87.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-ccccccCCCCcEEEEEcccccc-------ccCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKLEKSYPDRLFVYVGNALKA-------SLKD 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~~~~-------~~~~ 148 (269)
+...++++|||-|.-++-+.+. .-..++++||.+..++.|+++.. ....-.-..-.+.++.+|.... ..+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 5678999999977776665552 34589999999999999998753 1100000112478999998754 1344
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH----HhcCceE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK----VFGKKLY 224 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~F~~~v~ 224 (269)
+||+|-+-..-+-+....-...-+++.+.++|+|||+++-.+.+. + .++..|++ .|++.+|
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds-----------d----~Ii~rlr~~e~~~~gNdiy 260 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS-----------D----VIIKRLRAGEVERFGNDIY 260 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH-----------H----HHHHHHHhccchhhcceee
Confidence 599996542222111111122468999999999999999877433 2 34455554 4888887
Q ss_pred EEE
Q 035593 225 VLS 227 (269)
Q Consensus 225 ~~~ 227 (269)
++.
T Consensus 261 kv~ 263 (389)
T KOG1975|consen 261 KVT 263 (389)
T ss_pred eEe
Confidence 764
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=70.90 Aligned_cols=109 Identities=20% Similarity=0.118 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCC--Cee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKD--GFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~--~yD 151 (269)
....++||+=+|+|+++.+.+.+ ...+++.||.|.....+.+++...-. ...+.+++..|+..+ .... .||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~----~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG----LEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC----CccceEEEeecHHHHHHhcCCCCccc
Confidence 46889999999999999999985 35699999999999999999874211 136899999999976 3333 499
Q ss_pred EEEEcCCCCCCCCCCCCc-HHHHHH--HHhhccCCcEEEEEecCC
Q 035593 152 GILVDLFSKGSLLSELED-PNTWEK--LRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~-~e~~~~--~~~~L~pgG~l~~~~~~~ 193 (269)
+|++|.+-... +.. ...+.. -...|+|+|.+++.....
T Consensus 117 lVflDPPy~~~----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 117 LVFLDPPYAKG----LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEEeCCCCccc----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 99999654321 211 223333 346799999999977543
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-05 Score=67.27 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=90.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------- 144 (269)
.+.+...|+|||+..|+++..+++... +..|++||+.| ..+ -+.+.++++|...-
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----------~~~-----~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----------MKP-----IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----------ccc-----CCCceEEeeeccCccHHHHHHH
Confidence 456789999999999999999998764 55799999988 111 35699999999864
Q ss_pred -ccCCCeeEEEEcCCCCCCC---CCCCC----cHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 145 -SLKDGFSGILVDLFSKGSL---LSELE----DPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~---~~~l~----~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
....+.|+|++|+.....- ..|.. ....++-+...|+|||.+++-.+... ....++..++
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~------------~~~~~l~~~~ 173 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE------------DFEDLLKALR 173 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC------------CHHHHHHHHH
Confidence 1344579999998654221 11221 23566677789999999999776431 2567889999
Q ss_pred HHhcCceEEEE
Q 035593 217 KVFGKKLYVLS 227 (269)
Q Consensus 217 ~~F~~~v~~~~ 227 (269)
+.|. .+....
T Consensus 174 ~~F~-~v~~~K 183 (205)
T COG0293 174 RLFR-KVKIFK 183 (205)
T ss_pred Hhhc-eeEEec
Confidence 9996 565553
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-06 Score=76.77 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=89.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC-CCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK-DGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~-~~yD~I~ 154 (269)
.++..|||.=+|-|.++..++++ ...+|+++||||..++..++++.++.+ ..+++.++||++++... ..+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCEEE
Confidence 45899999999999999999884 344599999999999999999988764 45699999999999433 8999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+..+.. +.+|+..+.+.+++||++-+....+.
T Consensus 262 m~~p~~--------a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 262 MGLPKS--------AHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred eCCCCc--------chhhHHHHHHHhhcCcEEEEEeccch
Confidence 876532 57899999999999999999887653
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.5e-07 Score=72.70 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=52.7
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc----CCCeeEEEE
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL----KDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~----~~~yD~I~~ 155 (269)
.|+|+.||.|..+.++++. ..+|++||+||..++.|+.+....+ ..++++++++|..+... ...+|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 5899999999999999985 4589999999999999999875432 24689999999998721 122899998
Q ss_pred cC
Q 035593 156 DL 157 (269)
Q Consensus 156 d~ 157 (269)
++
T Consensus 76 SP 77 (163)
T PF09445_consen 76 SP 77 (163)
T ss_dssp --
T ss_pred CC
Confidence 75
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.6e-06 Score=71.73 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=67.5
Q ss_pred HHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-ccccccCCCCcEEEEEccccccc
Q 035593 67 DAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 67 ~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
+.+..-..+.|+..||++|.|+|.++..|++ .+.+|+++|+||.|+....+++. .+. ..+++++++|....
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe--~~kkVvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~- 119 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLE--AGKKVVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKT- 119 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHH--hcCeEEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccC-
Confidence 3344444577899999999999999999998 47899999999999988888774 332 46899999998654
Q ss_pred cCCCeeEEEEcCCC
Q 035593 146 LKDGFSGILVDLFS 159 (269)
Q Consensus 146 ~~~~yD~I~~d~~~ 159 (269)
....||.++.+.+-
T Consensus 120 d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLPRFDGCVSNLPY 133 (315)
T ss_pred CCcccceeeccCCc
Confidence 33589999986543
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=71.23 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.+..+||.+|.|.|.+...+.++ |-.+=+.+|.+|+|.+..|++--. ...+|.+..+--.+. ..++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcce
Confidence 46899999999999999999985 545667899999999998887421 145677777655554 45677999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE-EecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV-NVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~-~~~~ 192 (269)
|+.|.|+... -.+.+|++.+.+.|||+|++.+ |..+
T Consensus 173 I~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 173 IYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred eEeechhhHH----HHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 9999886421 1246899999999999999975 5543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.7e-07 Score=71.92 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=78.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
...+.|+|.|+|.++...++. .-+|.++|.||...+.|++++..+. ..+++++.+|++++.. +..|+|++.+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~y~f-e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARDYDF-ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC-----CcceEEEecccccccc-cccceeHHHH
Confidence 467999999999999888873 6699999999999999999987765 5789999999999844 6789998765
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
-+..-.... ....++.+.+.|+.++.++
T Consensus 105 lDTaLi~E~--qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 LDTALIEEK--QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhHHhhccc--ccHHHHHHHHHhhcCCccc
Confidence 443211111 2456777777888888765
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-07 Score=68.91 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=44.4
Q ss_pred EEEcCcccHHHHHHHHHCC-C--ceEEEEECChH---HHHHHHHhcCccccccCCCCcEEEEEcccccc--c-cCCCeeE
Q 035593 82 GILGFGAGSAARLILDLYP-E--AVIHGWELDPS---VIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S-LKDGFSG 152 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p-~--~~v~~vEidp~---~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~-~~~~yD~ 152 (269)
||||+..|..+..+++..+ + .++++||..+. .-+..++ .++ ..+++++.+|..+. . ..+++|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~-------~~~~~~~~g~s~~~l~~~~~~~~dl 72 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL-------SDRVEFIQGDSPDFLPSLPDGPIDL 72 (106)
T ss_dssp --------------------------EEEESS-------------GGG--------BTEEEEES-THHHHHHHHH--EEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC-------CCeEEEEEcCcHHHHHHcCCCCEEE
Confidence 6899999999988887654 2 27999999994 4444333 122 35799999999876 2 2479999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|++|..... -.....++.+..+|+|||+++++
T Consensus 73 i~iDg~H~~-----~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 73 IFIDGDHSY-----EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEES---H-----HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCCCCH-----HHHHHHHHHHHHHcCCCeEEEEe
Confidence 999975321 11457889999999999999985
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.3e-06 Score=71.28 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=66.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
..++||||+|.|.++..++..+. +|++-|+++.|...-+++ .++++.. .++ ..+.+||+|.+-
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k------------g~~vl~~--~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK------------GFTVLDI--DDWQQTDFKFDVISCL 158 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC------------CCeEEeh--hhhhccCCceEEEeeh
Confidence 57899999999999999988664 599999999996554443 2343322 235 445689999741
Q ss_pred CCCCCCCCC-CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLS-ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~-~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.... ......+++.+++.|+|+|++++-+.
T Consensus 159 -----NvLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 159 -----NVLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred -----hhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 1111 12236899999999999999887653
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-06 Score=77.85 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=78.6
Q ss_pred HHHhcCCCCCCCCcEEEEcCcccHHHHHHHHH-------CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc
Q 035593 67 DAFATLPPILPPGPIGILGFGAGSAARLILDL-------YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG 139 (269)
Q Consensus 67 ~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~-------~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~ 139 (269)
+.|+.+....+..+|||-.||+|.+...+.++ .+..++.++|+++.++.+|+-++-+.... .....+..+
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~~~~~i~~~ 112 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---NSNINIIQG 112 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---CBGCEEEES
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---ccccccccc
Confidence 34433323345668999999999999888764 36789999999999999998775332211 234568899
Q ss_pred ccccc-c--cCCCeeEEEEcCCCCCC-C-CCC------C---------CcHHHHHHHHhhccCCcEEEEEec
Q 035593 140 NALKA-S--LKDGFSGILVDLFSKGS-L-LSE------L---------EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 140 D~~~~-~--~~~~yD~I~~d~~~~~~-~-~~~------l---------~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|.... . ...+||+|+.+++-... . ... + ..-.|+..+.+.|+++|.+++-+.
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 98765 2 25799999998543322 0 000 0 012588999999999999888774
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-06 Score=83.73 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=78.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-------C-----CceEEEEECChH---HHHHHH-----------HhcC-c----ccc
Q 035593 78 PGPIGILGFGAGSAARLILDLY-------P-----EAVIHGWELDPS---VIKVAR-----------EFFA-L----EKL 126 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-------p-----~~~v~~vEidp~---~~~~a~-----------~~~~-~----~~~ 126 (269)
.-+|||+|.|+|.....+.+.+ | ..+++++|.+|- -+..+- +... . +..
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999876666443 3 359999998662 222221 1110 0 000
Q ss_pred c--cCCC--CcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 127 E--KSYP--DRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 127 ~--~~~~--~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
. .+.+ -+++++.+|+++. ....++|+|++|.|++ ...+.+++.++|+.++++++|||.++...
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAP-AKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCC-ccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 0 0111 2567889999987 3346799999999987 46678999999999999999999999765
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=70.61 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCC-cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc---CccccccCCCCcEEEEEccc-cccc-----c
Q 035593 77 PPG-PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFF---ALEKLEKSYPDRLFVYVGNA-LKAS-----L 146 (269)
Q Consensus 77 ~~~-~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~---~~~~~~~~~~~rv~~~~~D~-~~~~-----~ 146 (269)
+.. +|||||+|+|..+.++++++|+.+-.--|+++....-.+.+. +++.. .+-+.+=..+. ..+. .
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv----~~P~~lDv~~~~w~~~~~~~~~ 99 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV----RPPLALDVSAPPWPWELPAPLS 99 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc----CCCeEeecCCCCCccccccccC
Confidence 444 499999999999999999999999999999998865445443 22221 11222211111 1111 3
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+.||+|++--.- .+.+.-.++.+|+.+.+.|++||.|+++-
T Consensus 100 ~~~~D~i~~~N~l--HI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 100 PESFDAIFCINML--HISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CCCcceeeehhHH--HhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 5689999963221 22333346789999999999999999854
|
The function of this family is unknown. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=63.07 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=53.8
Q ss_pred CCCcEEEEcCcccH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGS-AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
++.+||+||||.|. ++..|.+ .+.+|+++|+||..++.|++. .++++.+|.++- ..-+.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999996 8877776 478999999999999988775 268889999876 445789999
Q ss_pred EE
Q 035593 154 LV 155 (269)
Q Consensus 154 ~~ 155 (269)
..
T Consensus 82 ys 83 (134)
T PRK04148 82 YS 83 (134)
T ss_pred EE
Confidence 85
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.5e-06 Score=76.25 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=81.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c--cCCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S--LKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~--~~~~yD 151 (269)
.+..++||+=||.|.++..|++ ...+|++||++++.++.|+++...+. -.+++++.+|+.++ . ....+|
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~ae~~~~~~~~~~~~d 364 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGDAEEFTPAWWEGYKPD 364 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCCHHHHhhhccccCCCC
Confidence 3567899999999999999996 46799999999999999999987654 34699999999998 2 235889
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|++|.+-.. ..+++++.+. .++|..++.+.+.
T Consensus 365 ~VvvDPPR~G------~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 365 VVVVDPPRAG------ADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred EEEECCCCCC------CCHHHHHHHH-hcCCCcEEEEeCC
Confidence 9999976553 1346666665 4678888888774
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-05 Score=80.07 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=81.6
Q ss_pred hHHHHHhcCCCC-CCCCcEEEEcCcccHHHHHHHHHC----C--------------------------------------
Q 035593 64 TYFDAFATLPPI-LPPGPIGILGFGAGSAARLILDLY----P-------------------------------------- 100 (269)
Q Consensus 64 ~y~~~~~~~~~l-~~~~~VL~iG~G~G~~~~~l~~~~----p-------------------------------------- 100 (269)
.....|+.+... .+...++|-+||+|+++.+.+... |
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 344445433223 457889999999999998876421 1
Q ss_pred CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHH
Q 035593 101 EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---LKDGFSGILVDLFSKGSLLSELEDPNTWEKLR 177 (269)
Q Consensus 101 ~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~ 177 (269)
..+|+++|+|+.+++.|+++....+. ..++++..+|+.++. ..++||+|+++++-.......-...++|+.+.
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 23799999999999999999754431 357999999998872 23579999998543322221112245666665
Q ss_pred hhcc---CCcEEEEEe
Q 035593 178 QCLR---KGGRIMVNV 190 (269)
Q Consensus 178 ~~L~---pgG~l~~~~ 190 (269)
+.|+ +|+.+++-.
T Consensus 332 ~~lk~~~~g~~~~llt 347 (702)
T PRK11783 332 RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHhCCCCeEEEEe
Confidence 5555 677665543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00052 Score=56.89 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=94.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
.+.+..+||-||+.+|+...++..-.++..|.+||.+|.+.+-.-.-.. ..+++--+.+||+.- .--+.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~-------~R~Ni~PIL~DA~~P~~Y~~~Ve~ 145 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE-------KRPNIIPILEDARKPEKYRHLVEK 145 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH-------hCCCceeeecccCCcHHhhhhccc
Confidence 3567899999999999999999997777899999999987543322211 135678888999864 34567
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
.|+|+.|...+. ..+-+..++...|+++|.+++.+-..+- +...++...+...+.+|++..-.-...+.
T Consensus 146 VDviy~DVAQp~------Qa~I~~~Na~~FLk~~G~~~i~iKArSI---dvT~dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 146 VDVIYQDVAQPN------QAEILADNAEFFLKKGGYVVIAIKARSI---DVTADPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred ccEEEEecCCch------HHHHHHHHHHHhcccCCeEEEEEEeecc---cccCCHHHHHHHHHHHHHhcCceeeEEec
Confidence 999999976443 1356778889999999954443321111 12234466777777777776312344443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=70.26 Aligned_cols=98 Identities=21% Similarity=0.169 Sum_probs=72.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+...|||||.|.|.++..|++.. .++++||+|+.+++..++.+.. +++++++.+|+.++
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-TTTS
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhh-------cccceeeecchhcc
Confidence 34444433234478899999999999999999864 8999999999999999998762 47899999999998
Q ss_pred ccC----CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh
Q 035593 145 SLK----DGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 145 ~~~----~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
... .....|+.+++-. .+..++..+..
T Consensus 89 ~~~~~~~~~~~~vv~NlPy~-------is~~il~~ll~ 119 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPYN-------ISSPILRKLLE 119 (262)
T ss_dssp CGGGHCSSSEEEEEEEETGT-------GHHHHHHHHHH
T ss_pred ccHHhhcCCceEEEEEeccc-------chHHHHHHHhh
Confidence 322 4667777654321 24566666665
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.2e-05 Score=62.44 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=86.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc--------
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA-------- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~-------- 144 (269)
+.|..+|||+||..|+++....++. |+..|.+||+-+ +. + .+.++++.+ |..+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~-p------~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE-P------PEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc-C------CCCcccccccccCCHHHHHHHHH
Confidence 4578999999999999999888876 889999999943 21 1 235677777 66542
Q ss_pred -ccCCCeeEEEEcCCCCCCC---CCCCCc----HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 145 -SLKDGFSGILVDLFSKGSL---LSELED----PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~---~~~l~~----~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
.++.+.|+|++|......- ..|... .+.+.-....+.|+|.+++-+|.... -..+.+.|.
T Consensus 131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e------------~~~l~r~l~ 198 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE------------EALLQRRLQ 198 (232)
T ss_pred hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc------------hHHHHHHHH
Confidence 3567899999997654321 123222 23444456778999999999986531 345677888
Q ss_pred HHhcCceEEEE
Q 035593 217 KVFGKKLYVLS 227 (269)
Q Consensus 217 ~~F~~~v~~~~ 227 (269)
++|. .|-.++
T Consensus 199 ~~f~-~Vk~vK 208 (232)
T KOG4589|consen 199 AVFT-NVKKVK 208 (232)
T ss_pred HHhh-hcEeeC
Confidence 9995 566553
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=6e-06 Score=63.79 Aligned_cols=91 Identities=23% Similarity=0.300 Sum_probs=62.3
Q ss_pred CCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHH
Q 035593 131 PDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVM 208 (269)
Q Consensus 131 ~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 208 (269)
.-+++++.+|+++. .....+|+|+.|.|++ ...+.+++.++|+.++++++|||+++.....
T Consensus 30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP-~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a---------------- 92 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSP-AKNPELWSEELFKKLARLSKPGGTLATYSSA---------------- 92 (124)
T ss_dssp TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-T-TTSGGGSSHHHHHHHHHHEEEEEEEEES--B----------------
T ss_pred CEEEEEEEcHHHHHHHhCcccCCEEEecCCCC-cCCcccCCHHHHHHHHHHhCCCcEEEEeech----------------
Confidence 34688999999987 4568999999999987 4677899999999999999999999885531
Q ss_pred HHHHHHHHHH-hcCceEEEEcCCCCceEEEEec
Q 035593 209 EATLKAMHKV-FGKKLYVLSLGNRKDDSLIALT 240 (269)
Q Consensus 209 ~~~~~~l~~~-F~~~v~~~~~~~~~n~v~~~~~ 240 (269)
..+.+.|.++ | .|...+-......++.+..
T Consensus 93 ~~Vr~~L~~aGF--~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 93 GAVRRALQQAGF--EVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHCTE--EEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHcCC--EEEEcCCCCCcchheEEEc
Confidence 1345556655 5 3665654455566666653
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=67.10 Aligned_cols=91 Identities=11% Similarity=0.036 Sum_probs=59.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEE-EEEccccccc------cCC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLF-VYVGNALKAS------LKD 148 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~-~~~~D~~~~~------~~~ 148 (269)
.+.+.|||+|||+|.++..+++. +..+|++||+++.++....+. ++++. +-..|++... .-.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~----------~~~v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQ----------DERVKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhc----------CCCeeEeecCCcccCCHhHcCCCce
Confidence 35778999999999999999984 456899999999877652211 23443 2333444321 112
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|++|+.. .-.+..+.+.|+| |.+++-+
T Consensus 143 ~~DvsfiS~------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 143 TFDVSFISL------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eeeEEEeeh------------HhHHHHHHHHhCc-CeEEEEc
Confidence 455555421 2368889999999 7766544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-05 Score=65.53 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=79.9
Q ss_pred cCCCCCC-CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHH---HHHHHhcCccccccCCCCcEEEEEcccccccc
Q 035593 71 TLPPILP-PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVI---KVAREFFALEKLEKSYPDRLFVYVGNALKASL 146 (269)
Q Consensus 71 ~~~~l~~-~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~---~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~ 146 (269)
..+.... +.+++|||.|+|.=+.-++=.+|+.+|+-+|....=+ +.+.+.+++ ++++++++.+.++..
T Consensus 60 ~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L--------~nv~i~~~RaE~~~~ 131 (215)
T COG0357 60 LLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL--------ENVEIVHGRAEEFGQ 131 (215)
T ss_pred hhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC--------CCeEEehhhHhhccc
Confidence 3334434 6899999999998777766567999999999988655 444455554 469999999999854
Q ss_pred CCC-eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 147 KDG-FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 147 ~~~-yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+ ||+|.+=++.. ...+.+-+...|++||.+++.-+..
T Consensus 132 ~~~~~D~vtsRAva~--------L~~l~e~~~pllk~~g~~~~~k~~~ 171 (215)
T COG0357 132 EKKQYDVVTSRAVAS--------LNVLLELCLPLLKVGGGFLAYKGLA 171 (215)
T ss_pred ccccCcEEEeehccc--------hHHHHHHHHHhcccCCcchhhhHHh
Confidence 444 99999866543 3578888889999999887655443
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=70.39 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
..|..+|||+.++.|+=+.+++....+ ..|+++|+++.-++..++++.--+ -.++.++..|++.+ ....
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-----~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-----VRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCceEEEecccccccccccccC
Confidence 446899999999999999999987664 567999999999888887763211 23588999999876 2223
Q ss_pred CeeEEEEcCCCCCC-C----CCC-------------CCcHHHHHHHHhhccCCcEEEEEecCCCc
Q 035593 149 GFSGILVDLFSKGS-L----LSE-------------LEDPNTWEKLRQCLRKGGRIMVNVGGSCV 195 (269)
Q Consensus 149 ~yD~I~~d~~~~~~-~----~~~-------------l~~~e~~~~~~~~L~pgG~l~~~~~~~~~ 195 (269)
+||.|++|++-+.. + |.. -...+++..+.+.|||||.|+....+...
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 69999999765532 1 110 02358899999999999999998887754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.5e-06 Score=72.27 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=72.3
Q ss_pred CCcEEEEcCccc----HHHHHHHHHCC----CceEEEEECChHHHHHHHHhc-C------ccc-----------------
Q 035593 78 PGPIGILGFGAG----SAARLILDLYP----EAVIHGWELDPSVIKVAREFF-A------LEK----------------- 125 (269)
Q Consensus 78 ~~~VL~iG~G~G----~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~-~------~~~----------------- 125 (269)
+-+|+..||++| +++..+.+..+ +.+|+|.|||+.+++.|++-. + +++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999 45566655432 468999999999999998532 0 000
Q ss_pred cc--cCCCCcEEEEEcccccc--ccCCCeeEEEEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 126 LE--KSYPDRLFVYVGNALKA--SLKDGFSGILVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 126 ~~--~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+. ..-..+|++...|..+. ...+.||+|++- +.- +-..-.....++.+.+.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvli---yF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMI---YFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHh---cCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 00 00124567777777653 235789999972 110 1111124689999999999999987743
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=71.88 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=72.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
-...+|+|+|.|.+++.++.+||+ |.+++.|...+-.++.+++ + .|+.+.+|+++- ..+-|+|++--
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~--------gV~~v~gdmfq~--~P~~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P--------GVEHVAGDMFQD--TPKGDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C--------Ccceeccccccc--CCCcCeEEEEe
Confidence 468999999999999999998886 7788888777777777664 3 388888998765 44566998743
Q ss_pred CCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEE
Q 035593 158 FSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 158 ~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...++. ..+|+++|++.|+|+|.+++-
T Consensus 245 -----iLhdwtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 245 -----ILHDWTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred -----ecccCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 222332 358999999999999988773
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=63.11 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=69.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.++++++||||.|.+.....- +.+..|.++||||+.+++++++..-- .-++.+.++|..+. ...+.||..++
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEf------EvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEF------EVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHh------hhhhheeeeeccchhccCCeEeeEEe
Confidence 589999999999999955543 34679999999999999999886321 12467888888777 55688999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhcc
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLR 181 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~ 181 (269)
|..-+. -..+ ...+|.+...+..+
T Consensus 121 NppFGT-k~~~-aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 121 NPPFGT-KKKG-ADMEFVSAALKVAS 144 (185)
T ss_pred cCCCCc-cccc-ccHHHHHHHHHHHH
Confidence 854331 1122 34577777666555
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=75.43 Aligned_cols=77 Identities=19% Similarity=0.070 Sum_probs=56.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC--------CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP--------EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p--------~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
...+|||.|||+|.+...++++.+ ..+++++|||+..++.|+..+.... ...+.++.+|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-----~~~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-----LLEINVINFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-----CCCceeeecccccccccc
Confidence 356899999999999998887653 2589999999999999998764221 12356676665532
Q ss_pred --ccCCCeeEEEEcCC
Q 035593 145 --SLKDGFSGILVDLF 158 (269)
Q Consensus 145 --~~~~~yD~I~~d~~ 158 (269)
...++||+|+.+++
T Consensus 106 ~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 106 IESYLDLFDIVITNPP 121 (524)
T ss_pred cccccCcccEEEeCCC
Confidence 12358999998753
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-05 Score=64.13 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCCcEEEEcCccc----HHHHHHHHHC----C-CceEEEEECChHHHHHHHHhc-------Ccccc-----------cc-
Q 035593 77 PPGPIGILGFGAG----SAARLILDLY----P-EAVIHGWELDPSVIKVAREFF-------ALEKL-----------EK- 128 (269)
Q Consensus 77 ~~~~VL~iG~G~G----~~~~~l~~~~----p-~~~v~~vEidp~~~~~a~~~~-------~~~~~-----------~~- 128 (269)
++-+|+..||++| +++..+.+.. + ..+|.+.|||+.+++.|++-. +++.. +.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4679999999999 4555555522 2 469999999999999997421 01000 00
Q ss_pred ----CCCCcEEEEEccccc-cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 129 ----SYPDRLFVYVGNALK-ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 129 ----~~~~rv~~~~~D~~~-~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.-..+|++...|..+ ....+.||+|++=-. -.+-..-.....++.+.+.|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV--lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV--LIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS--GGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE--EEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 012478888888887 366789999997210 000111123689999999999999999843
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00023 Score=63.81 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc-CCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL-KDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~-~~~yD~I 153 (269)
+.+..++|||||++|..+..++++ +.+|++||..+-. ..-. .+++|+.+.+|+..+.+ .+.+|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~----~~L~--------~~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA----QSLM--------DTGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC----Hhhh--------CCCCEEEEeccCcccCCCCCCCCEE
Confidence 456889999999999999999984 6799999966521 1111 26899999999999843 7789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCC--cEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKG--GRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg--G~l~~~~~~~ 193 (269)
++|+... .....+.+.+.|..| ...++|+--+
T Consensus 275 VcDmve~--------P~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 275 VCDMVEK--------PARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred EEecccC--------HHHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 9997644 246777777888766 4677777433
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=63.63 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=81.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~y 150 (269)
.+-+||||.||.|.....++...|. .+|...|.+|..++..++...-..+ ..-+++.++|+++. ....+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEEEecCCCCHhHhhccCCCC
Confidence 4789999999999999888888886 7999999999999999887643322 23469999999986 345678
Q ss_pred eEEEEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+++++. ++.- .+..-.-...+..+.++|.|||.++...
T Consensus 211 ~l~iVsGL~El--F~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYEL--FPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhh--CCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 888763 2211 1211112457888999999999998865
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.7e-05 Score=65.97 Aligned_cols=111 Identities=22% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCcEEEEcCccc----HHHHHHHHHCC-----CceEEEEECChHHHHHHHHhc-C-------ccc-c-c----cCC----
Q 035593 78 PGPIGILGFGAG----SAARLILDLYP-----EAVIHGWELDPSVIKVAREFF-A-------LEK-L-E----KSY---- 130 (269)
Q Consensus 78 ~~~VL~iG~G~G----~~~~~l~~~~p-----~~~v~~vEidp~~~~~a~~~~-~-------~~~-~-~----~~~---- 130 (269)
+-+|.-.||++| +++..|.+..+ ..+|+|.|||..+++.|+.-. + ++. + . ...
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 678999999999 67777777765 479999999999999997422 1 000 0 0 000
Q ss_pred ------CCcEEEEEccccccc-cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 131 ------PDRLFVYVGNALKAS-LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 131 ------~~rv~~~~~D~~~~~-~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...|.+...|...-. ..+.||+|+|= +--.+-..-...+.++.++..|+|||+|.+-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR--NVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR--NVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEc--ceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 123444444443322 45679999962 00001112234689999999999999998843
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=66.67 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=60.1
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c------------
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S------------ 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~------------ 145 (269)
.+|||+-||.|.++..+++. ..+|++||+++++++.|++++..+. -.+++++.+++.++ .
T Consensus 198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeeccchhHHHHhhHHHHhhh
Confidence 37999999999999999873 5699999999999999999987654 35799999887654 0
Q ss_pred ----cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh
Q 035593 146 ----LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 146 ----~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
....+|+|++|++-.. ....+++.+.+
T Consensus 271 ~~~~~~~~~d~vilDPPR~G------~~~~~~~~~~~ 301 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAG------LDEKVIELIKK 301 (352)
T ss_dssp GS-GGCTTESEEEE---TT-------SCHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEcCCCCC------chHHHHHHHhc
Confidence 1236899999976543 13566666643
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.85 E-value=5e-05 Score=59.68 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=47.7
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
.++|||||.|..+..+++..+..+|+++|++|.+.+.+++++..+. -++++++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeee
Confidence 3899999999999999998888899999999999999999875432 135777765544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00042 Score=58.86 Aligned_cols=127 Identities=18% Similarity=0.310 Sum_probs=88.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChH----HHHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPS----VIKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~----~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
.+.|..+||-||+++|....++.... |..-|++||.++. .+.+|+++ +++--|+.||+.-
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----------tNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----------TNIIPIIEDARHPAKYR 221 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----------CCceeeeccCCCchhee
Confidence 46689999999999999999888753 6778999999874 35555553 4677788999864
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hc
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FG 220 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~ 220 (269)
-.-...|+||.|+..++. ..-.--++...||+||-+++.+-..|-+ .....+..+....+.|++- +.
T Consensus 222 mlVgmVDvIFaDvaqpdq------~RivaLNA~~FLk~gGhfvisikancid---stv~ae~vFa~Ev~klqee~lk 289 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQ------ARIVALNAQYFLKNGGHFVISIKANCID---STVFAEAVFAAEVKKLQEEQLK 289 (317)
T ss_pred eeeeeEEEEeccCCCchh------hhhhhhhhhhhhccCCeEEEEEeccccc---ccccHHHHHHHHHHHHHHhccC
Confidence 234588999998765531 2233345667799999999877655532 1122345667777777764 53
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=64.40 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=97.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD 151 (269)
.+..+|||+++|.|+=+.+++.... ...|+++|+++.-+...++++..-+ ...+.++..|++.. .....||
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-----~~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-----VFNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----CceEEEEeeccccccccccccccc
Confidence 4678899999999999999998876 6799999999999988887753211 34688888999887 3344699
Q ss_pred EEEEcCCCCCC-C---CCC--------------CCcHHHHHHHHhhc----cCCcEEEEEecCCCccccccccchhHHHH
Q 035593 152 GILVDLFSKGS-L---LSE--------------LEDPNTWEKLRQCL----RKGGRIMVNVGGSCVEAEDSRRDGKVVME 209 (269)
Q Consensus 152 ~I~~d~~~~~~-~---~~~--------------l~~~e~~~~~~~~L----~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (269)
.|++|++-... . .+. -...+.++.+.+.+ +|||+++....+..+. -..
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e----------ENE 228 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE----------ENE 228 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG----------GTH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH----------HHH
Confidence 99999865532 1 110 02357899999999 9999999988765431 123
Q ss_pred HHHHHHHHHhcCceEEE
Q 035593 210 ATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 210 ~~~~~l~~~F~~~v~~~ 226 (269)
.+++.+-+.++ .....
T Consensus 229 ~vV~~fl~~~~-~~~l~ 244 (283)
T PF01189_consen 229 EVVEKFLKRHP-DFELV 244 (283)
T ss_dssp HHHHHHHHHST-SEEEE
T ss_pred HHHHHHHHhCC-CcEEE
Confidence 45555555564 34443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.7e-05 Score=62.13 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=64.8
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-c----cccccCCCCcEEEEE
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-L----EKLEKSYPDRLFVYV 138 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~----~~~~~~~~~rv~~~~ 138 (269)
.....++....+.+....+|||||.|....+++-..+-.+..+||+.|...+.|+.... + ..++ ....+++++.
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g-~~~~~v~l~~ 107 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG-KRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT-B---EEEEEC
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh-cccccceeec
Confidence 34444443334677889999999999998877765443469999999999988864321 0 0000 1245799999
Q ss_pred cccccc----ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 139 GNALKA----SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 139 ~D~~~~----~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+|+.+. ..-..-|+|+++.+. ..+. ....+.+....||+|-.++.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~---F~~~--l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC---FDPD--LNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT---T-HH--HHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEeccc---cCHH--HHHHHHHHHhcCCCCCEEEE
Confidence 998764 112467999986331 1111 23444556677887666543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.5e-05 Score=69.02 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=83.2
Q ss_pred CCcEEEEcCcccHHHHHHHHH----CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC-CCeeE
Q 035593 78 PGPIGILGFGAGSAARLILDL----YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK-DGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~----~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~-~~yD~ 152 (269)
...|+.+|+|-|-+....++. ....++.+||-+|..+-..+. .....| +.+|+++..|+|.+..+ ++.|+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W----~~~Vtii~~DMR~w~ap~eq~DI 442 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECW----DNRVTIISSDMRKWNAPREQADI 442 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhh----cCeeEEEeccccccCCchhhccc
Confidence 346888999999988776653 236799999999998877655 344455 47999999999999654 89999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|++.+-.. ....-.++|.+..+.+.|||+|+.+=....+
T Consensus 443 ~VSELLGS--FGDNELSPECLDG~q~fLkpdgIsIP~sYtS 481 (649)
T KOG0822|consen 443 IVSELLGS--FGDNELSPECLDGAQKFLKPDGISIPSSYTS 481 (649)
T ss_pred hHHHhhcc--ccCccCCHHHHHHHHhhcCCCceEccchhhh
Confidence 99765432 3333347899999999999999887654444
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00019 Score=65.21 Aligned_cols=119 Identities=18% Similarity=0.090 Sum_probs=82.3
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCC--------------------------------c-------eEEEEE
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYPE--------------------------------A-------VIHGWE 108 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~--------------------------------~-------~v~~vE 108 (269)
+|+.+....+...++|-=||+|+++.+.+-..++ + .+.++|
T Consensus 182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~D 261 (381)
T COG0116 182 AILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSD 261 (381)
T ss_pred HHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEec
Confidence 3433333445678999999999999888765432 1 277999
Q ss_pred CChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC-CCeeEEEEcCCCCCCCCCCCC----cHHHHHHHHhhccCC
Q 035593 109 LDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK-DGFSGILVDLFSKGSLLSELE----DPNTWEKLRQCLRKG 183 (269)
Q Consensus 109 idp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~-~~yD~I~~d~~~~~~~~~~l~----~~e~~~~~~~~L~pg 183 (269)
||+.+++.|+.+....+ ..+.+++.++|+..+..+ +.+|+||++++-......+-. -.+|.+.+++.++--
T Consensus 262 id~r~i~~Ak~NA~~AG----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 262 IDPRHIEGAKANARAAG----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred CCHHHHHHHHHHHHhcC----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 99999999998864322 246799999999999544 899999998654433332211 134555666666666
Q ss_pred cEEEEEe
Q 035593 184 GRIMVNV 190 (269)
Q Consensus 184 G~l~~~~ 190 (269)
+.+++..
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6776644
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.7e-05 Score=63.64 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=79.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
.+.+++||||-|.+.+.+... .-.+++.+|.+-.|++.|+.--. + .-.+...++|-... ....++|+|+..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~qd-p------~i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDAQD-P------SIETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhccCC-C------ceEEEEEecchhcccccccchhhhhhh
Confidence 567999999999999999874 24589999999999999987521 1 12456667776665 667899999976
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+..++ .++ .+..+.+|+..|||+|.|+-.+.+.
T Consensus 145 lslHW--~Nd--LPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 145 LSLHW--TND--LPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhhh--hcc--CchHHHHHHHhcCCCccchhHHhcc
Confidence 54432 122 3678999999999999999877654
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00026 Score=62.89 Aligned_cols=77 Identities=29% Similarity=0.333 Sum_probs=64.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---c---cCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---S---LKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~---~~~ 148 (269)
..++..++|.=+|.|..+..+++..++.+|+++|.||.+++.|++.+.-. ..|+++++++..++ . ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCCHHHHHHHHHhcCCC
Confidence 45677899999999999999999877799999999999999999876411 35899999999886 1 235
Q ss_pred CeeEEEEcC
Q 035593 149 GFSGILVDL 157 (269)
Q Consensus 149 ~yD~I~~d~ 157 (269)
++|.|+.|+
T Consensus 92 ~vDgIl~DL 100 (305)
T TIGR00006 92 KIDGILVDL 100 (305)
T ss_pred cccEEEEec
Confidence 799999875
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=65.91 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=77.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
+.+|||.=+|+|.=+...++..++ .+|++-|+||+.++..++++.+++.. +.++++...|+..+ .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---DERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S---GCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc---CceEEEehhhHHHHhhhccccCCEEE
Confidence 458999999999888777766554 59999999999999999998766532 23799999999987 3788999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|.|... ..|+..+.+.++.||+|.+...
T Consensus 127 lDPfGSp--------~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 127 LDPFGSP--------APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp E--SS----------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred eCCCCCc--------cHhHHHHHHHhhcCCEEEEecc
Confidence 9999752 5899999999999999998764
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=50.60 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=69.1
Q ss_pred EEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc--c-ccC-CCeeEEEE
Q 035593 81 IGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK--A-SLK-DGFSGILV 155 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~--~-~~~-~~yD~I~~ 155 (269)
++++|||+|... .+....+. ..++++|+++.++..++....... ...+.++.+|... . ... ..||++ .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~-~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-----LGLVDFVVADALGGVLPFEDSASFDLV-I 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-----CCceEEEEeccccCCCCCCCCCceeEE-e
Confidence 999999999977 44443333 488999999999998655432111 1116888888776 3 223 489999 4
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...... .......+..+.+.|+|+|.+++.....
T Consensus 125 ~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 125 SLLVLH----LLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeehh----cCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 322111 1114789999999999999998877654
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00026 Score=60.83 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc----ccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE----KLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~----~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
+|||+=+|.|..+..++.+ +++|++||.+|.+..+.++.+..- .....-..|++++.+|+.++ .....||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999974 788999999999999888765321 00000015799999999998 344589999
Q ss_pred EEcCCCC
Q 035593 154 LVDLFSK 160 (269)
Q Consensus 154 ~~d~~~~ 160 (269)
++|..-+
T Consensus 169 YlDPMfp 175 (250)
T PRK10742 169 YLDPMFP 175 (250)
T ss_pred EECCCCC
Confidence 9996543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00075 Score=59.39 Aligned_cols=106 Identities=10% Similarity=0.035 Sum_probs=64.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc-ccccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL-KASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~-~~~~~~~yD~I~ 154 (269)
.|.+|||+|+|.|+.+.++...++. .++++||.++.|+++++.-+.-... ...... ..+.. +...-...|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~----~~~~~~-~~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN----NRNAEW-RRVLYRDFLPFPPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc----cccchh-hhhhhcccccCCCCcEEE
Confidence 4789999999999998888887773 4899999999999999987642110 011111 11111 112223349998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+.- .-...+. -...++++.+.+.+++ .|++--.
T Consensus 108 ~s~-~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 108 ASY-VLNELPS-AARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred Eeh-hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcC
Confidence 631 1112222 2345778888777766 5555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0003 Score=58.77 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=53.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
...|.|+|||.+.++..+.. ..+|...|+-. . ++ .++.+|.... ..++..|+++.+
T Consensus 73 ~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-----------~-------n~--~Vtacdia~vPL~~~svDv~Vfc 129 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-----------P-------NP--RVTACDIANVPLEDESVDVAVFC 129 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S------EEEEESS------------S-------ST--TEEES-TTS-S--TT-EEEEEEE
T ss_pred CEEEEECCCchHHHHHhccc---CceEEEeeccC-----------C-------CC--CEEEecCccCcCCCCceeEEEEE
Confidence 46899999999999976532 45788888843 1 23 3667898777 667899999987
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+.-.. -.-.+|++++.+.||+||.|.+--.
T Consensus 130 LSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 130 LSLMG-----TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp S---S-----S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhC-----CCcHHHHHHHHheeccCcEEEEEEe
Confidence 64321 1236999999999999999987544
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00074 Score=60.60 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=73.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC----CceEEEEECChHHHHHHHHhcCccccccCCCCcEEE--EEcccccc----cc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP----EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFV--YVGNALKA----SL 146 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~--~~~D~~~~----~~ 146 (269)
+...++|+|||+|.=++.|++... ..+.++||||.++++.+.+.+.... -|.+++ +++|..+- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-----~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-----FSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-----CCCeEEEEEEecHHHHHhhccc
Confidence 456899999999998887777552 4689999999999999998875211 244555 88887653 11
Q ss_pred ---CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh-hccCCcEEEEEec
Q 035593 147 ---KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ-CLRKGGRIMVNVG 191 (269)
Q Consensus 147 ---~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~-~L~pgG~l~~~~~ 191 (269)
.....+|+.-..+-....+ .....|++.+++ .|+|||.|++-+-
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccccCCccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 2345666642111111111 113489999999 9999999988653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00062 Score=57.28 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=72.5
Q ss_pred EEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcCCC
Q 035593 81 IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDLFS 159 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~ 159 (269)
|.||||--|.++.+|.+.....+++++|+++.-++.|++...... ...+++++.+|+.+. ...+..|.|++....
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccCCCCCCCEEEEecCC
Confidence 689999999999999996555689999999999999998874332 246899999999887 444557999886543
Q ss_pred CCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 160 KGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 160 ~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+. ...++++.....++..-.|++.-.+
T Consensus 77 G~------lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 77 GE------LIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp HH------HHHHHHHHTGGGGTT--EEEEEESS
T ss_pred HH------HHHHHHHhhHHHhccCCeEEEeCCC
Confidence 31 1457888888888776778876643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00036 Score=62.02 Aligned_cols=77 Identities=29% Similarity=0.374 Sum_probs=58.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------c-cC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------S-LK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~-~~ 147 (269)
..|...++|.=.|.|+.+..+++.+|+++++++|.||++++.|++.+... .+|+.+++++..++ . ..
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF------DDRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-GGGHHHHHHHTTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc------cceEEEEeccHHHHHHHHHHccCC
Confidence 45678899999999999999999889999999999999999999887522 47999999999886 2 34
Q ss_pred CCeeEEEEcC
Q 035593 148 DGFSGILVDL 157 (269)
Q Consensus 148 ~~yD~I~~d~ 157 (269)
.++|.|++|+
T Consensus 92 ~~~dgiL~DL 101 (310)
T PF01795_consen 92 NKVDGILFDL 101 (310)
T ss_dssp S-EEEEEEE-
T ss_pred CccCEEEEcc
Confidence 5899999885
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00065 Score=61.15 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
+.+|||-=+|+|.=+...+...+..+++.=||||..+++++++...+. .....++..|+..+ .....||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhcCCCccEEec
Confidence 789999999999988777765666699999999999999999987652 34566777999887 44589999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|.|.+. ..|+..+.+..+.+|++.+.....
T Consensus 128 DPFGSP--------aPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 128 DPFGSP--------APFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred CCCCCC--------chHHHHHHHHhhcCCEEEEEeccc
Confidence 998753 479999999999999999876543
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00059 Score=59.59 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC---------ccccc------------------c--
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA---------LEKLE------------------K-- 128 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~---------~~~~~------------------~-- 128 (269)
+.+||+-|||-|.++..++++ +..+.+.|.|--|+=...--++ +.++. .
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 679999999999999999984 8899999999988654432111 11110 0
Q ss_pred ------CCCCcEEEEEcccccc-cc---CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 129 ------SYPDRLFVYVGNALKA-SL---KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 129 ------~~~~rv~~~~~D~~~~-~~---~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
....++....||+.++ .. .++||+|+..-|- +.. . .-.++++.+.+.|||||+. +|+.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA-~--Ni~~Yi~tI~~lLkpgG~W-IN~G 202 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTA-E--NIIEYIETIEHLLKPGGYW-INFG 202 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-ech-H--HHHHHHHHHHHHhccCCEE-EecC
Confidence 0245789999999987 33 4799999865332 111 1 1358999999999999944 6764
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00067 Score=65.44 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=71.6
Q ss_pred cEEEEcCcccHHHHHHHHHCC----CceEEEEECChHHHHHHHHhc-Ccccccc---CCCCcEEEEEccccccccC----
Q 035593 80 PIGILGFGAGSAARLILDLYP----EAVIHGWELDPSVIKVAREFF-ALEKLEK---SYPDRLFVYVGNALKASLK---- 147 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~-~~~~~~~---~~~~rv~~~~~D~~~~~~~---- 147 (269)
.|+++|+|-|-+....++... ..+|.+||.||..+...+.+. ....|.. ..+.+|++|..|+|.+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999998877666432 469999999966443433332 3334421 1246899999999998322
Q ss_pred --------CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccC----CcE
Q 035593 148 --------DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRK----GGR 185 (269)
Q Consensus 148 --------~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p----gG~ 185 (269)
+++|+||+.+-.+ ....-.++|-+..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGS--FGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGS--LGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcc--cccccCCHHHHHHHHHhhhhhcccccc
Confidence 2799999865433 22333367888888888887 776
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=57.25 Aligned_cols=78 Identities=29% Similarity=0.327 Sum_probs=65.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------cc
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------SL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~~ 146 (269)
...|....+|.=.|.|+.+.++++.+| ..+++++|.||.+++.|++.+.-. ++|++++++.+..+ ..
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeCcHHHHHHHHHhcC
Confidence 455778999999999999999999988 457999999999999999987421 47999999998876 22
Q ss_pred CCCeeEEEEcC
Q 035593 147 KDGFSGILVDL 157 (269)
Q Consensus 147 ~~~yD~I~~d~ 157 (269)
..++|-|+.|+
T Consensus 94 i~~vDGiL~DL 104 (314)
T COG0275 94 IGKVDGILLDL 104 (314)
T ss_pred CCceeEEEEec
Confidence 46899999875
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00096 Score=55.06 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=75.5
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCe
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGF 150 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~y 150 (269)
..|.....++|||+|.|+|..+...++. ....|.+.|++|..+...+-+...+ .-.+.+...|... .+..+
T Consensus 73 ~~PetVrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~an------gv~i~~~~~d~~g--~~~~~ 143 (218)
T COG3897 73 DHPETVRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAAN------GVSILFTHADLIG--SPPAF 143 (218)
T ss_pred cCccccccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhc------cceeEEeeccccC--CCcce
Confidence 3444556899999999999999988874 4568999999998888877766543 3467888888765 67899
Q ss_pred eEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|+|+. |++-.... -...+. ++..|+..|..++ ++.+.
T Consensus 144 Dl~LagDlfy~~~~-----a~~l~~-~~~~l~~~g~~vl-vgdp~ 181 (218)
T COG3897 144 DLLLAGDLFYNHTE-----ADRLIP-WKDRLAEAGAAVL-VGDPG 181 (218)
T ss_pred eEEEeeceecCchH-----HHHHHH-HHHHHHhCCCEEE-EeCCC
Confidence 99985 44322111 123333 7777888887666 44443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=61.57 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=76.4
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cC
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LK 147 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~ 147 (269)
.+..+...+-+||+-||+|.++..+++ +-.+|.+||++|+.++-|+++...++ -.+.++|+|-+.+. . ..
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE~~~~sl~~ 449 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAEDLFPSLLT 449 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcchhcC-----ccceeeeecchhhccchhcc
Confidence 333444578899999999999999998 56799999999999999999987665 46899999977765 1 11
Q ss_pred ---CCee-EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 ---DGFS-GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ---~~yD-~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..=+ ++++|..-.. ....++..+++.-++.=++.+.+
T Consensus 450 ~~~~~~~~v~iiDPpR~G------lh~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 450 PCCDSETLVAIIDPPRKG------LHMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred cCCCCCceEEEECCCccc------ccHHHHHHHHhccCccceEEEEc
Confidence 2334 5566654321 13467777776665665555554
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=55.25 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=55.6
Q ss_pred CCCcEEEEcCcccHHHHHHHH---HC-CCceEEEEECChHHH-HHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 77 PPGPIGILGFGAGSAARLILD---LY-PEAVIHGWELDPSVI-KVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~---~~-p~~~v~~vEidp~~~-~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
+|..|+++|.-.|+.+.+++. .+ +..+|.+||||..-. +.+.+.-.+ .+|+++++||..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-------~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-------SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-------cCceEEEECCCCCHHHHHHHH
Confidence 688999999988888776654 34 678999999975432 222222111 37999999999864
Q ss_pred --ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 --SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.......+|+.|+... ..| ...-++.....+++|+.+++-
T Consensus 105 ~~~~~~~~vlVilDs~H~---~~h--vl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHT---HEH--VLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SS----SSEEEEESS-------SS--HHHHHHHHHHT--TT-EEEET
T ss_pred HhhccCCceEEEECCCcc---HHH--HHHHHHHhCccCCCCCEEEEE
Confidence 1234566888876421 112 456777799999999999873
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0026 Score=54.39 Aligned_cols=103 Identities=13% Similarity=-0.018 Sum_probs=60.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I 153 (269)
..++||.||=..-......+. .+..+|+++|||+.+++.-++.....+ -.++.+..|.+.- ...++||++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~g------l~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEG------LPIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BSEE
T ss_pred cCCEEEEEcCCcHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcC------CceEEEEecccccCCHHHhcCCCEE
Confidence 588999999776655444443 356799999999999998887653222 2499999999986 346899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCc-EEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGG-RIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG-~l~~~~~ 191 (269)
+.|.+-. +.. -.-|+....+.||..| ...+.+.
T Consensus 117 ~TDPPyT---~~G--~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 117 FTDPPYT---PEG--LKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp EE---SS---HHH--HHHHHHHHHHTB-STT-EEEEEE-
T ss_pred EeCCCCC---HHH--HHHHHHHHHHHhCCCCceEEEEEe
Confidence 9985421 111 1358889999999877 4444443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00093 Score=57.36 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.++.+|+|||||.--++.-+....+++.+.++|||..+++....++..- ....++...|...-......|+.
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l------~~~~~~~v~Dl~~~~~~~~~Dla 175 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL------GVPHDARVRDLLSDPPKEPADLA 175 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT------T-CEEEEEE-TTTSHTTSEESEE
T ss_pred cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh------CCCcceeEeeeeccCCCCCcchh
Confidence 344699999999999999887776666889999999999999999987643 35678888887766667789999
Q ss_pred EE
Q 035593 154 LV 155 (269)
Q Consensus 154 ~~ 155 (269)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 85
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0035 Score=57.36 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=97.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
|..+|||+.+..|.=+.+++....+ ..|.+.|.+..-++..+.++..-+ -.+..+...|++++ ...++||-
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-----v~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-----VTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-----CCceEEEccCcccccccccCcccce
Confidence 5789999999999888888876654 599999999988887776652111 24578888999987 23348999
Q ss_pred EEEcCCCCC-CCC---C--------------CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHH
Q 035593 153 ILVDLFSKG-SLL---S--------------ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKA 214 (269)
Q Consensus 153 I~~d~~~~~-~~~---~--------------~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (269)
|++|++-+. ++. + .-...+.|..+...+++||+|+....+.... -...++..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~----------ENE~vV~y 385 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE----------ENEAVVDY 385 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh----------hhHHHHHH
Confidence 999986653 110 0 0124578888999999999999988776431 13455665
Q ss_pred HHHHhcCceEEEEcC
Q 035593 215 MHKVFGKKLYVLSLG 229 (269)
Q Consensus 215 l~~~F~~~v~~~~~~ 229 (269)
.-.-|| .+-+.+++
T Consensus 386 aL~K~p-~~kL~p~~ 399 (460)
T KOG1122|consen 386 ALKKRP-EVKLVPTG 399 (460)
T ss_pred HHHhCC-ceEecccc
Confidence 666675 46666544
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00044 Score=57.99 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
....|+|.-||.|+.+...+.+ ...|.++||||.-+..||.++...+. .+|+++++||..+. .....+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecC----CceeEEEechHHHHHHHHhhhhheee
Confidence 5677888888888777776664 56899999999999999999865432 35999999999886 2344577
Q ss_pred EEEEc
Q 035593 152 GILVD 156 (269)
Q Consensus 152 ~I~~d 156 (269)
+++..
T Consensus 168 ~vf~s 172 (263)
T KOG2730|consen 168 CVFLS 172 (263)
T ss_pred eeecC
Confidence 88754
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0031 Score=53.01 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=84.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
...++.||||--+.++.+|.+..+...++++|+++.-++.|.+++..+. ..+++++..+|+... ..+...|+|++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCccccCccCCcCEEEE
Confidence 4556999999999999999998888899999999999999999986554 357999999999766 66678999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
....+. .-.+++++-.+.|+.-=.+++.-
T Consensus 92 AGMGG~------lI~~ILee~~~~l~~~~rlILQP 120 (226)
T COG2384 92 AGMGGT------LIREILEEGKEKLKGVERLILQP 120 (226)
T ss_pred eCCcHH------HHHHHHHHhhhhhcCcceEEECC
Confidence 654431 13588888888887655566543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0045 Score=53.85 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=64.5
Q ss_pred CCcEEEEcCc--ccHHHHHHHH-HCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c-----
Q 035593 78 PGPIGILGFG--AGSAARLILD-LYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S----- 145 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~-~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~----- 145 (269)
-...|||||| +-....++++ ..|+++|+-||.||-++..++..+.-++ ..+..++.+|.++- .
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHH
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHH
Confidence 3579999999 3345555544 3589999999999999999998875321 22499999999974 1
Q ss_pred ----cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 146 ----LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 146 ----~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+..=++++..... ++..-...+.++.++..|.||..|++.....
T Consensus 144 ~~lD~~rPVavll~~vLh~--v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVLHF--VPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp CC--TTS--EEEECT-GGG--S-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred hcCCCCCCeeeeeeeeecc--CCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 234444555443211 2222234689999999999999999876543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00038 Score=64.66 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=86.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---cCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S---LKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~---~~~~yD 151 (269)
+.+||+.=+++|.-+...++..|++ +|++-|.++..++..+++..++. ....++..+.|+... . ....||
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~----v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG----VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC----chhhcccccchHHHHHHhccccccccc
Confidence 6789998889999888888778865 99999999999999999887653 356789999999876 3 347999
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|=+|.|... ..|+..+.+.++.||+|.+.+..
T Consensus 186 vIDLDPyGs~--------s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 186 VIDLDPYGSP--------SPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred eEecCCCCCc--------cHHHHHHHHHhhcCCEEEEEecc
Confidence 9999988753 47999999999999999987643
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0058 Score=53.86 Aligned_cols=145 Identities=21% Similarity=0.288 Sum_probs=88.2
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|+.+|+| +|++++.+.+......|++.|.+..-.+.+.+. +... .. .+..........|+|++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d-------~~----~~~~~~~~~~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVID-------EL----TVAGLAEAAAEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Cccc-------cc----ccchhhhhcccCCEEEEe
Confidence 579999999 788889988866666788888888777776543 2210 00 011101334568999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE---cCC---
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS---LGN--- 230 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~---~~~--- 230 (269)
.+-. .+.++++++...|++ |.+++.+.+. ...+++.+++..+..+..+. ...
T Consensus 72 vPi~-------~~~~~l~~l~~~l~~-g~iv~Dv~S~--------------K~~v~~a~~~~~~~~~~~vg~HPM~G~~~ 129 (279)
T COG0287 72 VPIE-------ATEEVLKELAPHLKK-GAIVTDVGSV--------------KSSVVEAMEKYLPGDVRFVGGHPMFGPEA 129 (279)
T ss_pred ccHH-------HHHHHHHHhcccCCC-CCEEEecccc--------------cHHHHHHHHHhccCCCeeEecCCCCCCcc
Confidence 4322 267899999998988 5566677654 24567777777764333332 111
Q ss_pred ----CCceEEEEecCCCCCHHHHHHhcCcchh
Q 035593 231 ----RKDDSLIALTGELPDLDDWKRALPRSLK 258 (269)
Q Consensus 231 ----~~n~v~~~~~~~~~~~~~~~~~l~~~~~ 258 (269)
..|.+++.+..+..+ .+|...+-+.+.
T Consensus 130 ~~~lf~~~~~vltp~~~~~-~~~~~~~~~~~~ 160 (279)
T COG0287 130 DAGLFENAVVVLTPSEGTE-KEWVEEVKRLWE 160 (279)
T ss_pred cccccCCCEEEEcCCCCCC-HHHHHHHHHHHH
Confidence 145666666665544 444444433333
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0086 Score=47.09 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=57.8
Q ss_pred eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEEEcC-CCCCC----CCCCCCcHHHHH
Q 035593 103 VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILVDL-FSKGS----LLSELEDPNTWE 174 (269)
Q Consensus 103 ~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~-~~~~~----~~~~l~~~e~~~ 174 (269)
+|.+.||.++.++.+++++.-.. ...|++++...=... -..++.|+++.++ |-+.+ ....-.|...++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 68999999999999999875322 124899998876665 2225899999874 22211 011123468999
Q ss_pred HHHhhccCCcEEEEEecCCC
Q 035593 175 KLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 175 ~~~~~L~pgG~l~~~~~~~~ 194 (269)
.+.+.|+|||++++-++..+
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHEEEEEEEEEEE--ST
T ss_pred HHHHhhccCCEEEEEEeCCC
Confidence 99999999999999887654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0014 Score=56.27 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=62.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
...|.|+|||-+-++.- -.-.|...|+-+ .+-+++..|++.. ..+++.|+++.+
T Consensus 181 ~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a--------------------~~~~V~~cDm~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-----ERHKVHSFDLVA--------------------VNERVIACDMRNVPLEDESVDVAVFC 235 (325)
T ss_pred ceEEEecccchhhhhhc-----cccceeeeeeec--------------------CCCceeeccccCCcCccCcccEEEee
Confidence 46789999999998862 123677777632 2346778899998 678899999977
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+.-.. . .-.+|+.++.+.|++||.+-+--..
T Consensus 236 LSLMg---t--n~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 236 LSLMG---T--NLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred Hhhhc---c--cHHHHHHHHHHHhccCceEEEEehh
Confidence 53221 1 1368999999999999998775543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=58.10 Aligned_cols=78 Identities=14% Similarity=0.019 Sum_probs=46.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc--c----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK--A----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~--~----~~~~~yD 151 (269)
.-++||||+|+.++=-.|..+..+.+++|.|||+..++.|++....++. -..+|+++...-.. + ...+.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~---L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN---LESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc---cccceEEEEcCCccccchhhhcccceee
Confidence 4689999999876643333333489999999999999999998765411 25789998764322 2 3456899
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+.+++.+
T Consensus 180 ftmCNPP 186 (299)
T PF05971_consen 180 FTMCNPP 186 (299)
T ss_dssp EEEE---
T ss_pred EEecCCc
Confidence 9999753
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=51.90 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=52.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHH----CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDL----YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~----~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.+...|+|+|+|-|.++..|+.. .++.+|++||.++..++.|.++..... .....+++...++..........+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG--SDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc--chhhccchhhccchhhhcccCCCe
Confidence 46889999999999999999982 268899999999999999987753211 001234555555444333334444
Q ss_pred EEE
Q 035593 152 GIL 154 (269)
Q Consensus 152 ~I~ 154 (269)
+++
T Consensus 102 ~~v 104 (141)
T PF13679_consen 102 ILV 104 (141)
T ss_pred EEE
Confidence 444
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0015 Score=61.18 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=68.2
Q ss_pred chHHHHHhc-CCCCCC---CCcEEEEcCcccHHHHHHHHHCCCceEEE---EECChHHHHHHHHhcCccccccCCCCcEE
Q 035593 63 NTYFDAFAT-LPPILP---PGPIGILGFGAGSAARLILDLYPEAVIHG---WELDPSVIKVAREFFALEKLEKSYPDRLF 135 (269)
Q Consensus 63 ~~y~~~~~~-~~~l~~---~~~VL~iG~G~G~~~~~l~~~~p~~~v~~---vEidp~~~~~a~~~~~~~~~~~~~~~rv~ 135 (269)
..|.+.+.. ++.... -..+||+|||.|+++.+|+++ +..+.. -|..+..++.|.++ +++. -+.
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa-------~~~ 168 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPA-------MIG 168 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-Ccch-------hhh
Confidence 468877753 333222 467999999999999999883 433222 24455566666554 2221 111
Q ss_pred EEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 136 VYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 136 ~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++ +. ..+ .....||+|-+.-... +.+....-++-++-+.|+|||.++....
T Consensus 169 ~~-~s-~rLPfp~~~fDmvHcsrc~i---~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 169 VL-GS-QRLPFPSNAFDMVHCSRCLI---PWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hh-cc-ccccCCccchhhhhcccccc---cchhcccceeehhhhhhccCceEEecCC
Confidence 11 11 223 5678899996532221 2222223477788999999999987654
|
; GO: 0008168 methyltransferase activity |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.012 Score=53.58 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=69.8
Q ss_pred CCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-cccc-c---ccCCCee
Q 035593 78 PGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALK-A---SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~-~---~~~~~yD 151 (269)
..+|+++|+| -|.++..+++.+...+|+++|++++-+++|+++++... +..... +... . .....+|
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~--------~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV--------VVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE--------eecCccccHHHHHHHHhCCCCCC
Confidence 4489999999 57777888887777899999999999999999875321 111111 2111 1 3345799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++|-. .. ....++.+.+.++++|.+++.-..
T Consensus 241 ~vie~-~G---------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 241 VVIEA-VG---------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EEEEC-CC---------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 99842 21 356899999999999999886554
|
|
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0026 Score=54.84 Aligned_cols=112 Identities=14% Similarity=0.047 Sum_probs=79.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHCC------------CceEEEEECChHHHHHHHHhcCccc-----------cc-------
Q 035593 78 PGPIGILGFGAGSAARLILDLYP------------EAVIHGWELDPSVIKVAREFFALEK-----------LE------- 127 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p------------~~~v~~vEidp~~~~~a~~~~~~~~-----------~~------- 127 (269)
.-.|+++|.|+|.....+.+.++ ..+++++|.+|.....++.....+. |.
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 45799999999998877765443 2378999998866544432110000 00
Q ss_pred --cC-CCCcEEEEEcccccc--ccCC---CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 128 --KS-YPDRLFVYVGNALKA--SLKD---GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 128 --~~-~~~rv~~~~~D~~~~--~~~~---~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.. ..-.+.++++|+... .... ++|+.+.|.|++. ..|.+++.+++..+++..++||.++...
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~-kNP~mW~~e~l~~~a~~~~~~~~l~t~s 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPV-KNPEMWEDELLNLMARIPYRDPTLATFA 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCcccc-CChhhccHHHHHHHHhhcCCCCceechH
Confidence 01 134678899999876 2233 7999999999874 5558899999999999999999998744
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.031 Score=50.57 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC----CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP----EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S--- 145 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~--- 145 (269)
+.|..+|||+++..|+=+..+++..- ...|++=|.|+.-+...++-...- ..+.+.+...|+..+ .
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-----~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-----PSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-----CCcceeeecccceeccccccc
Confidence 55899999999999999888877532 238999999998877766654322 246677777777655 1
Q ss_pred -----cCCCeeEEEEcCCCC-CCCC----------------C--CCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 146 -----LKDGFSGILVDLFSK-GSLL----------------S--ELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 146 -----~~~~yD~I~~d~~~~-~~~~----------------~--~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
....||-|++|+.-. ++.. . +......+....+.|++||.++....+-.
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 235799999997433 2210 0 12234788889999999999999876653
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.011 Score=52.46 Aligned_cols=106 Identities=13% Similarity=0.043 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+.+..+||++|+| .|..+...++.+...+|..+|+++.-+++||+ |+..... ....-. ...+.++. .....
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~--~~~~~~-~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTD--PSSHKS-SPQELAELVEKALGKKQ 242 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEe--eccccc-cHHHHHHHHHhhccccC
Confidence 4468899999999 68888888888877899999999999999999 7643210 000000 11222222 12355
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|+.|-..- ...-++..-..++.+|.+++-.++..
T Consensus 243 ~d~~~dCsG----------~~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 243 PDVTFDCSG----------AEVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred CCeEEEccC----------chHHHHHHHHHhccCCEEEEeccCCC
Confidence 898884321 23567778889999999777666653
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.018 Score=54.85 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc--ccCCCCc-----EEEEEccccc----
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL--EKSYPDR-----LFVYVGNALK---- 143 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~--~~~~~~r-----v~~~~~D~~~---- 143 (269)
.++.+|+++|+| .|..+...++.. +++|+++|++++..+.+++ ++.... ....+.. ++....|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes-lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES-MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 368999999999 566666777654 5689999999999999988 342100 0000000 0000001000
Q ss_pred -c-ccCCCeeEEEEcCCCCCCCCCCCCcHHH-HHHHHhhccCCcEEEEEe
Q 035593 144 -A-SLKDGFSGILVDLFSKGSLLSELEDPNT-WEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 144 -~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~-~~~~~~~L~pgG~l~~~~ 190 (269)
+ ...+.+|+||..+..+.... +.. .+.+.+.+||||+++.-.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~a-----P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPA-----PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccC-----cchHHHHHHHhcCCCCEEEEEc
Confidence 0 11146999996544321111 234 488889999999887543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.015 Score=52.44 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc-ccCCCee
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA-SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~-~~~~~yD 151 (269)
+.|.++|+++|+| -|.++..+++.. +++|++++++++-.+.|++.-. -.++.. |.... ...+.+|
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGA-----------d~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGA-----------DHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCC-----------cEEEEcCCchhhHHhHhhCc
Confidence 4468999999987 456777777754 5999999999999999998632 123322 22112 2223499
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|+.-.. ...+....+.|+++|.+++.-..
T Consensus 232 ~ii~tv~-----------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-----------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-----------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9986432 24677788899999999986544
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.013 Score=54.69 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=79.2
Q ss_pred CCCCCCC-cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 73 PPILPPG-PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 73 ~~l~~~~-~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
+.+.|.. ++|.+|||.-.+...+.+. .--.|+.+|+|+.+++.....-... .+-.++...|+... ..++.|
T Consensus 43 ~~~~p~~~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~------~~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 43 KYLSPSDFKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKE------RPEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred HhhchhhceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccC------CcceEEEEecchhccCCCcce
Confidence 3455666 9999999999888777652 2348999999999999887664321 46689999999887 778899
Q ss_pred eEEEE----cCCCCCCCCC--CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILV----DLFSKGSLLS--ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~----d~~~~~~~~~--~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|+- |+........ .......+..+.+.|++||+++.-..
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99983 2222211110 11234778899999999998765444
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.017 Score=48.92 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=89.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHC----C-C-c---eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 78 PGPIGILGFGAGSAARLILDLY----P-E-A---VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~----p-~-~---~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
-++++|+.+..|+++..|.++. + . . .|++||+.| ..+ -+.|.-+++|....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaP-----I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAP-----IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCc-----cCceEEeecccCCHhHHH
Confidence 5799999999999999888753 2 1 1 399999966 111 24688888998764
Q ss_pred -----ccCCCeeEEEEcCCCCCCCCCCC---C----cHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHH
Q 035593 145 -----SLKDGFSGILVDLFSKGSLLSEL---E----DPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATL 212 (269)
Q Consensus 145 -----~~~~~yD~I~~d~~~~~~~~~~l---~----~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (269)
...++.|+|++|......-...+ . ....+.-....|+|||.|+.-++.. ++ ...+.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg--------~~----tslLy 173 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG--------RD----TSLLY 173 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc--------Cc----hHHHH
Confidence 24679999999964332111111 1 1245556678999999999887653 12 45678
Q ss_pred HHHHHHhcCceEEEEcCCCCc----eEEEEecC
Q 035593 213 KAMHKVFGKKLYVLSLGNRKD----DSLIALTG 241 (269)
Q Consensus 213 ~~l~~~F~~~v~~~~~~~~~n----~v~~~~~~ 241 (269)
..|+..|. .+...+-..+.| ..++|..-
T Consensus 174 sql~~ff~-kv~~~KPrsSR~sSiEaFvvC~~~ 205 (294)
T KOG1099|consen 174 SQLRKFFK-KVTCAKPRSSRNSSIEAFVVCLGY 205 (294)
T ss_pred HHHHHHhh-ceeeecCCccccccceeeeeeccc
Confidence 89999996 677765333333 34666644
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0011 Score=57.64 Aligned_cols=101 Identities=23% Similarity=0.183 Sum_probs=75.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
...++|+|||.|-.... .|.+.+.+.|+....+..|++.-+ ..+..+|+... .....||.+++-
T Consensus 46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~-----------~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGG-----------DNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred cceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCC-----------ceeehhhhhcCCCCCCccccchhh
Confidence 67899999999976543 488899999999988888776421 26777899887 677899999864
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+.-+ +.....-....++++.+.|+|||...+.+|...
T Consensus 111 avih-hlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 111 AVIH-HLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhh-hhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 3322 111122235899999999999999999998764
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0061 Score=50.68 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-ccccc-cCCCCcEEEEEcccccc----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKLE-KSYPDRLFVYVGNALKA----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~-~~~~~rv~~~~~D~~~~----~~~~~yD 151 (269)
.-.+.|||||-|.+...|.-.+|+.-|.+.||--.|.+..+++.. +.... ...-+++.+...++..| ...++..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 457999999999999999999999999999999999888877652 11000 00134677777777766 2334444
Q ss_pred EEEEcCCCCCC----CCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGS----LLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~----~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
-++.-..++.- ....+.+...+.+..=.|++||.+....
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 44443333210 1123456678888999999999887644
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.03 Score=53.38 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=82.0
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC----CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYP----EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
.+.|+.+....+..+|.|-.||+|++.....+... ...+.+.|+++...++|+.++.+.+.. ..+.+..+|-
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~----~~~~i~~~dt 250 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE----GDANIRHGDT 250 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC----cccccccccc
Confidence 34444332224567999999999998877666442 378999999999999999998665411 1356666665
Q ss_pred ccc--c----cCCCeeEEEEcCCCC-CC-------------------CCCCCCc-HHHHHHHHhhccCCcEEEEEecCC
Q 035593 142 LKA--S----LKDGFSGILVDLFSK-GS-------------------LLSELED-PNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 142 ~~~--~----~~~~yD~I~~d~~~~-~~-------------------~~~~l~~-~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..- . ...+||.|+.+.+.. .. .++.-.. ..|++.+...|+|+|...+-+...
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 543 2 346799999875432 10 0111112 579999999999998666655433
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.03 Score=47.76 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=70.6
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc---cc
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA---SL 146 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~---~~ 146 (269)
.+....+.+.+||||.-||.++..++++ ...+|++||..-.-+..- +. .++|+.++.. +++.+ ..
T Consensus 73 ~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~k-----LR-----~d~rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 73 EFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWK-----LR-----NDPRVIVLERTNVRYLTPEDF 141 (245)
T ss_pred hcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHh-----Hh-----cCCcEEEEecCChhhCCHHHc
Confidence 4444446899999999999999999984 466999999865333221 11 3678777664 45544 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+..|+|++|..-- .....+-.+...|+|+|.++.=+
T Consensus 142 ~~~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 142 TEKPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ccCCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEe
Confidence 34789999986422 13567888888899988776544
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.031 Score=50.40 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=60.5
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+..+||++|+| .|.++..+++.. ++ +|++++.+++-.+.+++ ++.... +..-..|..+. ...+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~-lGa~~v-------i~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE-MGADKL-------VNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH-cCCcEE-------ecCCcccHHHHhccCCCCCEE
Confidence 57899999875 455556666654 55 79999999999999987 442110 00001112222 222358988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+ |+.. ....++.+.+.|+++|.++..-
T Consensus 240 i-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 F-EVSG---------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred E-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 4332 2357788889999999988754
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0079 Score=54.93 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.|..+++++|||-|...+++.. +..+.+++++.++.-+..+........ -+.+..+..+|...- .++..||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~----l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAY----LDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHH----hhhhcceehhhhhcCCCCccccCcE
Confidence 34567899999999999999987 578899999999988877765542111 022344477777766 677889988
Q ss_pred EE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
-+ |..-+ .+ .....++++++.++|||++++.-+.
T Consensus 183 ~~ld~~~~--~~---~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 183 RFLEVVCH--AP---DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEEeeccc--CC---cHHHHHHHHhcccCCCceEEeHHHH
Confidence 63 32211 11 2468999999999999999986543
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.053 Score=46.79 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCcEEEEcCccc--H--HHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 78 PGPIGILGFGAG--S--AARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G~G--~--~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
..+||-+|+|+- . -+..|++.+| ++.++-.|+++ +.. +--..+.+|.+.+..+.++|+
T Consensus 62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d--------~vS---------Da~~~~~~Dc~t~~~~~k~Dl 124 (299)
T PF06460_consen 62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD--------YVS---------DADQSIVGDCRTYMPPDKFDL 124 (299)
T ss_dssp T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B----------SSSEEEES-GGGEEESS-EEE
T ss_pred CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh--------hcc---------ccCCceeccccccCCCCcccE
Confidence 679999999842 2 2355666677 67888888854 221 223667799999988899999
Q ss_pred EEEcCCCCCCC---CCCCCcHHHH----HHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 153 ILVDLFSKGSL---LSELEDPNTW----EKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 153 I~~d~~~~~~~---~~~l~~~e~~----~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
||+|.+++..- ......+.|| .-+++.|+-||.+++-+..... ..-+-.|.+.|.
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-------------~~~Lyel~~~F~ 186 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-------------NAQLYELMGYFS 186 (299)
T ss_dssp EEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS---------------HHHHHHHTTEE
T ss_pred EEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-------------cHHHHHHHhhcc
Confidence 99999965321 1111123344 4557999999999998854321 234556777785
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.011 Score=50.59 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=48.1
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC---c-cccccCCCCcEEEEEcccccc--ccCCCeeE
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA---L-EKLEKSYPDRLFVYVGNALKA--SLKDGFSG 152 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~---~-~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~ 152 (269)
.+|||.=+|-|.-+..++.. +++|+++|-||-+..+.+.-+. . ..+......|++++++|..++ .....||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999888763 7899999999999877664321 1 110000124899999999998 45789999
Q ss_pred EEEcCCCC
Q 035593 153 ILVDLFSK 160 (269)
Q Consensus 153 I~~d~~~~ 160 (269)
|.+|..-+
T Consensus 155 VY~DPMFp 162 (234)
T PF04445_consen 155 VYFDPMFP 162 (234)
T ss_dssp EEE--S--
T ss_pred EEECCCCC
Confidence 99997544
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.029 Score=47.24 Aligned_cols=93 Identities=10% Similarity=0.041 Sum_probs=64.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I 153 (269)
+.++|||||=+...+.. ..+-..|+.+|+++. .-.+..+|+.+. ...++||+|
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence 57999999854443332 234567999999871 125667788776 356799999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcE-----EEEEecCCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGR-----IMVNVGGSC 194 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~-----l~~~~~~~~ 194 (269)
.+.+.-. .+|.....-+.++.+.+.|+|+|. |.+-+..++
T Consensus 109 s~SLVLN-fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 109 SLSLVLN-FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEEe-eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 8765322 233333345999999999999999 877776555
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.035 Score=49.93 Aligned_cols=110 Identities=22% Similarity=0.225 Sum_probs=69.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhc---CccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFF---ALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~---~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
|++|||+|.|.|..+.++-..+|.. .++.+|.+|.+-++.-.-. .... .+-|..=+..|-..+.....|++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~----td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK----TDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc----CCCCCCccchhccCCCccceeehh
Confidence 7789999999999998888888864 8999999998876654322 1110 111222223333333455678887
Q ss_pred EEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++- ---+... +......++.+.+.++|||.|++---+.
T Consensus 190 i~~~eLl~d~~--ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 190 IVLDELLPDGN--EKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhccccC--cchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 742 1111111 1112358999999999999998866443
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.096 Score=44.11 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=67.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccc---cc------------------------
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEK---LE------------------------ 127 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~---~~------------------------ 127 (269)
.|-.+-|-.||+|.+...+.-.+++ ..|.+-|||++++++|++++++-. +.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4778999999999998766544443 489999999999999998875311 00
Q ss_pred ----------cCCCCcEEEEEcccccc------ccCCCeeEEEEcCCCCCCCCCCC-----CcHHHHHHHHhhccCCcEE
Q 035593 128 ----------KSYPDRLFVYVGNALKA------SLKDGFSGILVDLFSKGSLLSEL-----EDPNTWEKLRQCLRKGGRI 186 (269)
Q Consensus 128 ----------~~~~~rv~~~~~D~~~~------~~~~~yD~I~~d~~~~~~~~~~l-----~~~e~~~~~~~~L~pgG~l 186 (269)
........+...|.++. ......|+|+.|++-.......- -...++..+...|.+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 00123467888888874 23445699999986553222111 1258999999999777787
Q ss_pred EE
Q 035593 187 MV 188 (269)
Q Consensus 187 ~~ 188 (269)
++
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 77
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.051 Score=48.22 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++.+|..||+| .|..+..++- .-++.|+.+|+|..-++.....|+ .|++.+......+ ..-.++|+||
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~-glgA~Vtild~n~~rl~~ldd~f~---------~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAI-GLGADVTILDLNIDRLRQLDDLFG---------GRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHh-ccCCeeEEEecCHHHHhhhhHhhC---------ceeEEEEcCHHHHHHHhhhccEEE
Confidence 37789999988 5666666654 348899999999998888777764 4788888887777 5567899998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
.-.--+..-.|.|. .+++.+.++||++++=
T Consensus 237 gaVLIpgakaPkLv----t~e~vk~MkpGsVivD 266 (371)
T COG0686 237 GAVLIPGAKAPKLV----TREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEecCCCCceeh----hHHHHHhcCCCcEEEE
Confidence 65433333345554 4566677899887763
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0085 Score=48.10 Aligned_cols=110 Identities=16% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCcccHHH-HHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCe
Q 035593 75 ILPPGPIGILGFGAGSAA-RLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~-~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~y 150 (269)
....++||++|+|--+++ ..++...|...|..-|=+++.++-.++-...+.. ....++.+..-+.... ....+|
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCcc
Confidence 334689999999955444 4555555788999999999999887775433210 0112333332222221 345689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|.|+..- -.-..-+..+..+.++..|+|.|..++..
T Consensus 105 DiIlaAD----ClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 105 DIILAAD----CLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred cEEEecc----chhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 9998521 01001123578889999999999966644
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.042 Score=42.39 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=59.1
Q ss_pred ccchHHHHHhc-CCCCC-CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE
Q 035593 61 LTNTYFDAFAT-LPPIL-PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV 138 (269)
Q Consensus 61 l~~~y~~~~~~-~~~l~-~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~ 138 (269)
+...|++.... ...+. ..++|++||++.|..+.+.+-+ ....|.++|.+|...+..++..... .++
T Consensus 10 ~~c~ywrey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~n-----------nI~ 77 (156)
T PHA01634 10 LECDYWREYPHAYGMLNVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYF-----------NIC 77 (156)
T ss_pred ccchHHHHHHHHhhheeecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhh-----------eee
Confidence 45667766532 21222 5899999999999999998863 3559999999999999998865422 111
Q ss_pred cccc---cc-ccCCCeeEEEEcCC
Q 035593 139 GNAL---KA-SLKDGFSGILVDLF 158 (269)
Q Consensus 139 ~D~~---~~-~~~~~yD~I~~d~~ 158 (269)
.-+. ++ ..-+.||+..+|.-
T Consensus 78 DK~v~~~eW~~~Y~~~Di~~iDCe 101 (156)
T PHA01634 78 DKAVMKGEWNGEYEDVDIFVMDCE 101 (156)
T ss_pred eceeecccccccCCCcceEEEEcc
Confidence 1121 23 34568999999874
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.09 Score=48.32 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++.+|+++|+| .|..+...++.. +++|+++|.+++-.+.+...++. .+.....+...+ ..-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHHHccCCEEE
Confidence 46789999987 455555555543 67899999999877766655531 122211222222 2234789999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
....-+....+.+.+.+.+ +.++++++++
T Consensus 236 ~a~~~~g~~~p~lit~~~l----~~mk~g~vIv 264 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLV----AQMKPGAVIV 264 (370)
T ss_pred EccccCCCCCCcCcCHHHH----hcCCCCCEEE
Confidence 7542211122344455555 4467876654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=47.64 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc-ccc----cccCC
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN-ALK----ASLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D-~~~----~~~~~ 148 (269)
+.+..+||++|+|+ |..+..+++.....+|++++.+++..+.++++.+.. -+.....+ ..+ +...+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~--------vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE--------TINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE--------EEcCCcchHHHHHHHHHcCCC
Confidence 34678999999987 888888888764346999999999999999874321 11111111 111 12334
Q ss_pred CeeEEEEcCCCCCCC------------CCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSL------------LSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~------------~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+- ....... .+.-.....++.+.+.|+++|.++...
T Consensus 254 ~~D~vld-~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCID-AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEE-CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 6998874 3221100 011123467888999999999987653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.1 Score=46.37 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=56.9
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+..+||++|+| -|.++..+++......|.+++.+++-++.|+...-.+ +. + .....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~-------~~------~----~~~~g~Dvvi- 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLD-------PE------K----DPRRDYRAIY- 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccC-------hh------h----ccCCCCCEEE-
Confidence 46789999976 5666677777654335778899988777765431111 00 0 0234689887
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+.. ....++.+.+.|+++|.+++--
T Consensus 206 d~~G---------~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASG---------DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCC---------CHHHHHHHHHhhhcCcEEEEEe
Confidence 4432 2357788889999999998643
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.0022 Score=53.43 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=63.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.+.++||||+|.|-++..++-.+ .+|.+-|++..|....++. + .+++ -..++ ..+-+||+|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-~-----------ynVl--~~~ew~~t~~k~dli~c 175 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-N-----------YNVL--TEIEWLQTDVKLDLILC 175 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-C-----------Ccee--eehhhhhcCceeehHHH
Confidence 37899999999999998876543 3689999999998776543 1 1221 12233 44568999964
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccC-CcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRK-GGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~p-gG~l~~~~ 190 (269)
- + -...+...-..++.++.+|+| +|.+++..
T Consensus 176 l--N--lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 176 L--N--LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred H--H--HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 1 0 011122345899999999999 88777654
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.057 Score=51.86 Aligned_cols=124 Identities=15% Similarity=0.042 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----c----
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----A---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~---- 144 (269)
.+.+...||||||..|++.....+..| +.-|++|||-|- .+ -+++..+++|... +
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp-----~~~c~t~v~dIttd~cr~~l~k 104 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KP-----IPNCDTLVEDITTDECRSKLRK 104 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------cc-----CCccchhhhhhhHHHHHHHHHH
Confidence 355788999999999999999988888 678999999761 11 2344445555443 2
Q ss_pred -ccCCCeeEEEEcCCCCCCCC-------CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 145 -SLKDGFSGILVDLFSKGSLL-------SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~-------~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
...-+.|+|+.|.....+.. ....+...++.+...|+-||.++.-++.+.. ...++..+.
T Consensus 105 ~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~d------------y~~ll~v~~ 172 (780)
T KOG1098|consen 105 ILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSED------------YNGLLRVFG 172 (780)
T ss_pred HHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCc------------chHHHHHHH
Confidence 12345699999976553321 1223557788888999999999888875421 345677777
Q ss_pred HHhcCceEEE
Q 035593 217 KVFGKKLYVL 226 (269)
Q Consensus 217 ~~F~~~v~~~ 226 (269)
+.|. .|...
T Consensus 173 qLf~-kv~~t 181 (780)
T KOG1098|consen 173 QLFK-KVEAT 181 (780)
T ss_pred HHHH-HHHhc
Confidence 7775 44444
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.14 Score=48.84 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=33.7
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
++.+||++|+|. |..+..+++.. ++.|+++|.+++..+.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 578999999984 45556666643 6789999999999998887
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.083 Score=46.45 Aligned_cols=119 Identities=12% Similarity=-0.008 Sum_probs=74.1
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--c-CCCeeEEEEc
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--L-KDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~-~~~yD~I~~d 156 (269)
+++++-||.|.+...+.+. .-..+.++|+|+..++..+.++.. .++.+|..++. . ...+|+|+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEeC
Confidence 6899999999999888773 233678899999999999988741 16678888872 2 4579999987
Q ss_pred CCCCCCC----CCCC------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 157 LFSKGSL----LSEL------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 157 ~~~~~~~----~~~l------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
.+-.... .... ...++++ +.+.++|.=+++=|+.+-.. .+....+..+++.|.+
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~g~~~------~~~~~~~~~i~~~l~~ 133 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIR-ILKEKKPKYFLLENVKGLLT------HDNGNTLKVILNTLEE 133 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHH-HHHhcCCCEEEEEcCcchhc------cCchHHHHHHHHHHHh
Confidence 5332111 0001 0124444 33455787566657754321 0112345566666654
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.44 Score=42.51 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=58.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|+++|+| +|.++..|.+ .+..|+.+...++-++..++.-++.-.. ......+......-...+.||+|++.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR--AGLPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh--CCCCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCCcccccccCEEEEE
Confidence 479999998 5566666665 4678999999876666555432221000 01111111001111223589999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.-.. .+.+.++.++..+.++..++.-
T Consensus 78 vK~~-------~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CKAY-------DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CCHH-------hHHHHHHHHHhhCCCCCEEEEE
Confidence 4322 2578999999999998866543
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.016 Score=50.32 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=63.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCcc---cccc---------CC-----------CC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALE---KLEK---------SY-----------PD 132 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~---~~~~---------~~-----------~~ 132 (269)
...++||||+|.-... ++...+. -+|+..|..+.-.+..++|+... .|.. .. ..
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4668999999984443 2222233 38999999999999888886421 1210 00 11
Q ss_pred cE-EEEEcccccc---cc----CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 133 RL-FVYVGNALKA---SL----KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 133 rv-~~~~~D~~~~---~~----~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.| +++..|..+- .. +++||+|++-..-.......-.-...++++.+.|||||.|++...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 23 3667787764 11 346999986432111011111124677888899999999988653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.053 Score=50.14 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=56.6
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeEEEEc
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~I~~d 156 (269)
..||+||.|+|.++....+.. .-.|+++|.=.-|.+.|++-...++| .+++++|.---.+.. ...+-|+++-.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCC----ccceeeeccccceeeecCcchhhhhhHh
Confidence 468999999999999888854 55899999999999999998766554 467888866544442 12346776654
Q ss_pred CCCC
Q 035593 157 LFSK 160 (269)
Q Consensus 157 ~~~~ 160 (269)
.|+.
T Consensus 143 ~fdt 146 (636)
T KOG1501|consen 143 DFDT 146 (636)
T ss_pred hhhh
Confidence 4443
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.098 Score=43.39 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=67.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHH----------HHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSV----------IKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~----------~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
-++|...|.|+=-|+|..++.+.... |...|+++-.++.. -.++++-. ..+++++-.+..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---------~aN~e~~~~~~~ 115 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---------YANVEVIGKPLV 115 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---------hhhhhhhCCccc
Confidence 46789999999999999999988754 45577777654431 11111110 123444444444
Q ss_pred ccccCCCeeEEEEcCCCCCCC---CCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 143 KASLKDGFSGILVDLFSKGSL---LSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 143 ~~~~~~~yD~I~~d~~~~~~~---~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+...+..|+++...+.+.-. ...-+...+++.+.+.|||||++.+--.
T Consensus 116 A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 116 ALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 444556677776533332211 1112346899999999999999988654
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.073 Score=47.22 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=65.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHH-------HHh--cCccccc-------c-------------
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVA-------REF--FALEKLE-------K------------- 128 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a-------~~~--~~~~~~~-------~------------- 128 (269)
+.+||.=|||.|.++..|+...+.++.. |.+--|+=.. +.. +...+|. .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 6789999999999999999865554433 7665554222 110 0011110 0
Q ss_pred ------CCCCcEEEEEcccccc----ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 129 ------SYPDRLFVYVGNALKA----SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 129 ------~~~~rv~~~~~D~~~~----~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.....+.+..||+.+. ...+.||+|+.+.|-. .. -.-.++++.+.+.|+|||+.+ |+.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-Ta---~NileYi~tI~~iLk~GGvWi-NlG 296 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-TA---HNILEYIDTIYKILKPGGVWI-NLG 296 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee-ch---HHHHHHHHHHHHhccCCcEEE-ecc
Confidence 0112344456888776 2335799998764321 11 113699999999999999874 653
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.23 Score=37.81 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=60.0
Q ss_pred cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------ccCCCeeEEEEcCCC
Q 035593 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SLKDGFSGILVDLFS 159 (269)
Q Consensus 87 G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~~~yD~I~~d~~~ 159 (269)
|-|..+..+++... .+|++++.+++-.+.+++. +.. .++..+-.++ .....+|+||-. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~-Ga~----------~~~~~~~~~~~~~i~~~~~~~~~d~vid~-~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL-GAD----------HVIDYSDDDFVEQIRELTGGRGVDVVIDC-VG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT-TES----------EEEETTTSSHHHHHHHHTTTSSEEEEEES-SS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh-ccc----------ccccccccccccccccccccccceEEEEe-cC
Confidence 45888888888765 9999999999999999875 321 2222222212 334589999843 22
Q ss_pred CCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 160 KGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 160 ~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..+.++.+.+.|+++|.+++-...
T Consensus 68 ---------~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 ---------SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp ---------SHHHHHHHHHHEEEEEEEEEESST
T ss_pred ---------cHHHHHHHHHHhccCCEEEEEEcc
Confidence 368999999999999999886554
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.31 Score=43.97 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=59.7
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 76 LPPGPIGILGFG-AGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+..+||++|+| .|.++..++++ ..+.+|++++.+++-++.|++ ++. ...+ . +......+|+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~~~~-~---~~~~~~g~d~v 226 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------TYLI-D---DIPEDLAVDHA 226 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------eeeh-h---hhhhccCCcEE
Confidence 467899999976 34444555554 446789999999988888875 321 1111 1 11112258988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+ |+.... .....+....+.|+++|.+++.-
T Consensus 227 i-D~~G~~------~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 F-ECVGGR------GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred E-ECCCCC------ccHHHHHHHHHhCcCCcEEEEEe
Confidence 7 543321 13467888899999999988654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.19 Score=37.67 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=59.0
Q ss_pred EEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeEE
Q 035593 81 IGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSGI 153 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~I 153 (269)
|+.+|+| .++..+++.. .+.+|+++|.|++.++.+++.. +.++.+|+.+. ..-++.|.|
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~------------~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREEG------------VEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------------SEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc------------cccccccchhhhHHhhcCccccCEE
Confidence 4566654 5665555543 2458999999999998887652 67999999876 234689998
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...+.. .--......+.+.|...+++-+.+
T Consensus 67 v~~~~~d~-------~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 67 VILTDDDE-------ENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EEESSSHH-------HHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EEccCCHH-------HHHHHHHHHHHHCCCCeEEEEECC
Confidence 87543221 112333445667788888877754
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.31 Score=43.25 Aligned_cols=97 Identities=23% Similarity=0.371 Sum_probs=62.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc---cccCCCe
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK---ASLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~---~~~~~~y 150 (269)
+.+..+||+.|+| .|..+..+++.. +.+|++++.+++..+.+++ ++... -+.....+... ....+.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~-~g~~~-------~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE-LGADE-------VLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH-hCCCE-------EEcCCCcCHHHHHHHhcCCCc
Confidence 4567899998765 366777777754 6789999999999988865 33211 01100001111 1234579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+|+. ... ....++.+.+.|+++|.++.-.
T Consensus 234 D~vid-~~g---------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFD-FVG---------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEE-CCC---------CHHHHHHHHHHhhcCCEEEEEC
Confidence 98873 221 2467888999999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.3 Score=44.28 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=60.7
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c---ccCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~---~~~~ 148 (269)
+.+..+||+.|+| .|..+..+++.. ++ +|++++.+++-.+.+++ ++... -+.....|..+ . ....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~-~Ga~~-------~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE-FGATH-------TVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-cCCce-------EEcCCCcCHHHHHHHHhCCC
Confidence 4568899999875 344556666654 55 59999999999999865 34211 01111112211 1 2234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+ |... ..+.++.+.+.|+++|.+++.-
T Consensus 245 g~d~vi-d~~g---------~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVI-DAVG---------RPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCEEE-ECCC---------CHHHHHHHHHHhccCCEEEEEC
Confidence 689887 4332 1356777888999999988643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.32 Score=42.52 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=59.1
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+..+||++|+| .|.++..+++.. +. +|++++.+++-.+.+++. +..... +.. . .............+|+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~-Ga~~~i---~~~-~-~~~~~~~~~~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSF-GATALA---EPE-V-LAERQGGLQNGRGVDVAL 192 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHc-CCcEec---Cch-h-hHHHHHHHhCCCCCCEEE
Confidence 67899999875 344555566654 55 499999999998888774 321100 000 0 000011112334699987
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|... ....++.+.+.|+++|.+++.-
T Consensus 193 -d~~G---------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 193 -EFSG---------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -ECCC---------ChHHHHHHHHHhcCCCEEEEec
Confidence 3322 2457888889999999998754
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.12 Score=45.64 Aligned_cols=105 Identities=12% Similarity=-0.019 Sum_probs=62.8
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--ccc---ccCC-------CCcEEEEEcccccc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKL---EKSY-------PDRLFVYVGNALKA 144 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~---~~~~-------~~rv~~~~~D~~~~ 144 (269)
++|..||+| ++.++..+++ .+.+|+++|++++.++.+.++... ... .... ..+++.. .|..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-- 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK-- 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH--
Confidence 479999998 4455555554 367899999999999887764310 000 0000 0112211 1211
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-...|+|+...+... -...++|..+.+.++++.++++|..+.
T Consensus 77 ~~~~~aD~Vi~avpe~~-----~~k~~~~~~l~~~~~~~~il~~~tSt~ 120 (288)
T PRK09260 77 AAVADADLVIEAVPEKL-----ELKKAVFETADAHAPAECYIATNTSTM 120 (288)
T ss_pred HhhcCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 12345799997654321 013478888889999988888887554
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.58 Score=41.80 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
..+|++||+| ++.++..|.+ .+.+|+.+..++. +..++. ++.-.. ......+....+... ...+.+|+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~~--~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSDY--EAVREN-GLQVDS--VHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCCH--HHHHhC-CeEEEe--CCCCeeecCceEEcchhhcCCCCEEE
Confidence 4589999998 5556666655 3678888888762 222222 211000 011111111111111 2235799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+..-.. .+.+.++.+...+++++.++.
T Consensus 78 lavK~~-------~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 78 VGLKTT-------ANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EEecCC-------ChHhHHHHHhhhcCCCCEEEE
Confidence 865432 246788899999999987654
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.16 Score=45.86 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc----ccc
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK----ASL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~----~~~ 146 (269)
+.+..+||++|+|+ |..+..+++.. +.+|++++.+++-.+.+++ ++... -+..... |..+ +..
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~-~Ga~~-------~i~~~~~~~~~~~~~~~~~t~ 234 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG-FGADL-------TLNPKDKSAREVKKLIKAFAK 234 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-hCCce-------EecCccccHHHHHHHHHhhcc
Confidence 45678999999864 56666667654 6689999999999998866 44211 0111111 1111 112
Q ss_pred CCCee----EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFS----GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD----~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+| +|+ |+.. ....++.+.+.|+++|.+++.-
T Consensus 235 ~~g~d~~~d~v~-d~~g---------~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 235 ARGLRSTGWKIF-ECSG---------SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred cCCCCCCcCEEE-ECCC---------ChHHHHHHHHHHhcCCeEEEEC
Confidence 23455 444 5432 2457777888999999997653
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.67 Score=41.27 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=55.8
Q ss_pred CcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|..||+|. +.++..+.+.....+|++++.+++..+.+++. +.. .. ...+.. ..-...|+|++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~~---------~~-~~~~~~--~~~~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GLG---------DR-VTTSAA--EAVKGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CCC---------ce-ecCCHH--HHhcCCCEEEEC
Confidence 5799999884 45555555532224899999999988777653 211 11 111211 112468999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.... ...++++.+...++++.++ +.+.
T Consensus 74 vp~~-------~~~~v~~~l~~~l~~~~iv-~dvg 100 (307)
T PRK07502 74 VPVG-------ASGAVAAEIAPHLKPGAIV-TDVG 100 (307)
T ss_pred CCHH-------HHHHHHHHHHhhCCCCCEE-EeCc
Confidence 5432 1356778888888887754 4553
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.41 Score=43.30 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=59.3
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEEC---ChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWEL---DPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEi---dp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.+..+||++|+| .|.++..+++.. +++|++++. +++-.+.+++ ++... +.....|..+......+|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~-~Ga~~--------v~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE-LGATY--------VNSSKTPVAEVKLVGEFD 240 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH-cCCEE--------ecCCccchhhhhhcCCCC
Confidence 467899999986 356666777754 668999987 6888888775 34211 100001110011234689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+||- ... ....+..+.+.|+++|.+++.-
T Consensus 241 ~vid-~~g---------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIE-ATG---------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEEE-CcC---------CHHHHHHHHHHccCCcEEEEEe
Confidence 8873 322 2357888899999999887643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.36 Score=43.46 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~ 149 (269)
+.+..+||+.|+| .|..+..+++.. +++ |++++.+++-.+.+++ ++... -+.....+..+. .....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~-~Ga~~-------~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKS-LGAMQ-------TFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH-cCCce-------EecCcccCHHHHHHHhcCCC
Confidence 4467899999875 334445555544 564 7999999999888865 44211 011111111111 23346
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|.+++|+... ...+..+.+.|+++|.+++.-
T Consensus 229 ~d~~v~d~~G~---------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILETAGV---------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEECCCC---------HHHHHHHHHHhhcCCEEEEEc
Confidence 88555665432 457888889999999987653
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.1 Score=46.06 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=41.8
Q ss_pred CcEEEEEcccccc---ccCCCeeEEEEcCCCCC--C---CCCCC-------CcHHHHHHHHhhccCCcEEEEEe
Q 035593 132 DRLFVYVGNALKA---SLKDGFSGILVDLFSKG--S---LLSEL-------EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 132 ~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~--~---~~~~l-------~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+++++|+.++ ...+++|+|++|.+-.. . ..... ...+++..+.++|||||.+++.+
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4568999999986 35678999999954211 0 00000 11478899999999999999865
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.6 Score=39.35 Aligned_cols=104 Identities=14% Similarity=0.023 Sum_probs=66.1
Q ss_pred CCCcEEEEcCccc----HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c-ccCCCe
Q 035593 77 PPGPIGILGFGAG----SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A-SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G----~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~-~~~~~y 150 (269)
+.+.++++.+++| +++...+.+.-+.++++|-.+++-....++.++-.. ..+.++++.++..+ . ..-...
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~----~~~~vEfvvg~~~e~~~~~~~~i 116 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG----LSDVVEFVVGEAPEEVMPGLKGI 116 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc----ccccceEEecCCHHHHHhhccCC
Confidence 4677888876654 344555555568899999999988877787764221 12457999998654 4 445689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE--EecC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV--NVGG 192 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~--~~~~ 192 (269)
|++++|+-..+ +..++|+.++ +.|.|.+++ |.++
T Consensus 117 DF~vVDc~~~d------~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 117 DFVVVDCKRED------FAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred CEEEEeCCchh------HHHHHHHHhc--cCCCceEEEEecccc
Confidence 99999975321 0124444433 556676554 5544
|
The function of this family is unknown. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.46 Score=43.01 Aligned_cols=96 Identities=10% Similarity=0.082 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc---ccCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~---~~~~ 148 (269)
+.+..+||+.|+ |.|.++..+++.. +++|++++.+++-.+.+++.++... -+..... |..+. ...+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~-------vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDE-------AFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCE-------EEECCCcccHHHHHHHHCCC
Confidence 456889999997 3667777777754 7789999999988888875555321 0111111 22111 1234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+|+|+ |... ...+..+.+.|+++|.+++.
T Consensus 228 gvD~v~-d~vG----------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYF-DNVG----------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEE-ECCC----------HHHHHHHHHHhccCCEEEEE
Confidence 699987 4322 24678888999999998864
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.064 Score=43.50 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc-ccc-CCCCcEEEEEcccccc--------
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK-LEK-SYPDRLFVYVGNALKA-------- 144 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~-~~~-~~~~rv~~~~~D~~~~-------- 144 (269)
.+|.+|+.+|.| .|..+..++... +++++..|..++..+..+..+...- ... ....+-. .|-.++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYE 93 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhH
Confidence 368999999998 566666777654 7899999999998887766543110 000 0000001 111111
Q ss_pred ----ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 ----SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ----~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-..+|+|+..+.-.....|.+.+.+.++. |+| |.+++.+
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~----m~~-gsvIvDi 138 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKS----MKP-GSVIVDI 138 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHT----SST-TEEEEET
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhc----cCC-CceEEEE
Confidence 1235689999765433345667777766554 555 6666666
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.51 Score=43.03 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c--ccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A--SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~--~~~~~ 149 (269)
+.+..+||++|+| .|.++..+++.. ++ +|++++.+++-.+.+++ ++... -+.....|..+ . ...+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~-~Ga~~-------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE-LGATA-------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH-cCCce-------EeCCCchhHHHHHHHHhCCC
Confidence 4567899999875 345556666654 56 79999999999999876 34211 01111112111 1 12236
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+|+ |... ..+.++.+.+.|+++|.++..-
T Consensus 260 ~d~vi-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAF-EMAG---------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEE-ECCC---------ChHHHHHHHHHHhcCCEEEEEc
Confidence 89987 3322 1357788888999999987643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.1 Score=39.65 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=61.7
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c--ccCCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A--SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~--~~~~~ 149 (269)
+.+..+||+.|+ |.|..+..+++. .+++|+++..+++-.+.+++ ++... -+.....|..+ . ...+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~-~G~~vi~~~~s~~~~~~l~~-~Ga~~-------vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKI-KGCKVIGCAGSDDKVAWLKE-LGFDA-------VFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH-cCCCE-------EEeCCCccHHHHHHHHCCCC
Confidence 556789999984 466677777775 47789999999998888877 44321 01111112111 1 12356
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+ |... .+.++.+.+.|+++|.++..
T Consensus 212 vd~vl-d~~g----------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYF-DNVG----------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEE-ECCC----------HHHHHHHHHhhccCCEEEEE
Confidence 99887 4321 25678889999999998753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.74 Score=39.10 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc---cccCCCe
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK---ASLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~---~~~~~~y 150 (269)
+.+..+||+.|+|+ |..+..+++.. +.+|++++.+++..+.+++. +... -+.....+... ....+.+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL-GADH-------VIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-CCce-------eccCCcCCHHHHHHHhcCCCC
Confidence 35688999999986 55666666643 68999999999888887654 2110 01000001000 1224579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|+.... ....+..+.+.|+++|.++....
T Consensus 203 d~vi~~~~----------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 203 DVVIDAVG----------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CEEEECCC----------CHHHHHHHHHhcccCCEEEEEcc
Confidence 99985322 12567888889999999886543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.032 Score=49.13 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=75.3
Q ss_pred CCcEEEEcCcccHHHH-HHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAAR-LILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~-~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
...|.|+=+|-|..+. ++.+ .....|.++|.||..++..|+....+. ...|..++.+|-|........|-|.+.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~----V~~r~~i~~gd~R~~~~~~~AdrVnLG 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANN----VMDRCRITEGDNRNPKPRLRADRVNLG 269 (351)
T ss_pred cchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcc----hHHHHHhhhccccccCccccchheeec
Confidence 5788999999999988 6555 356699999999999999999876553 356888999998887777888999876
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCC-c-EEEEE
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKG-G-RIMVN 189 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pg-G-~l~~~ 189 (269)
+-.+ +++-+-.+.++|+|. | ++-++
T Consensus 270 LlPS--------se~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 270 LLPS--------SEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred cccc--------cccchHHHHHHhhhcCCcEEEEe
Confidence 5433 345556677788884 4 55554
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.081 Score=45.82 Aligned_cols=45 Identities=29% Similarity=0.318 Sum_probs=35.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCC--------CceEEEEECChHHHHHHHHhcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYP--------EAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p--------~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+-+|+++|.|.|.++..+++... ..+++.||++|.+.+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 56999999999999998887532 3599999999999998888764
|
; PDB: 4F3N_A 1ZKD_B. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.9 Score=38.54 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
..+|..||+| +|.++..+.+ .+.+|++++.++. .+.+++ ++ +.. ..|..+.. ....|+|++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~--~G~~V~~~d~~~~-~~~a~~-~g-----------v~~-~~~~~e~~-~~~aDvVil 98 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVK--QGHTVLATSRSDY-SDIAAE-LG-----------VSF-FRDPDDFC-EEHPDVVLL 98 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEECccH-HHHHHH-cC-----------Cee-eCCHHHHh-hCCCCEEEE
Confidence 5689999988 5566666655 3568999999874 344433 22 111 12222211 235799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHH-HhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC
Q 035593 156 DLFSKGSLLSELEDPNTWEKL-RQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK 221 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~-~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 221 (269)
..... ...++++++ ...++++ .+++++.+. ....++.+++.++.
T Consensus 99 avp~~-------~~~~vl~~l~~~~l~~~-~iviDv~Sv--------------K~~~~~~~~~~l~~ 143 (304)
T PLN02256 99 CTSIL-------STEAVLRSLPLQRLKRS-TLFVDVLSV--------------KEFPKNLLLQVLPE 143 (304)
T ss_pred ecCHH-------HHHHHHHhhhhhccCCC-CEEEecCCc--------------hHHHHHHHHHhCCC
Confidence 54321 246777777 5567775 466777653 12456667777754
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.54 Score=38.14 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=66.6
Q ss_pred EEEcCcccHHHHHHHHHCC-CceE--EEEECChHHHHHHH---HhcCccccccCCCCcEEEE-Ecccccc-----ccCCC
Q 035593 82 GILGFGAGSAARLILDLYP-EAVI--HGWELDPSVIKVAR---EFFALEKLEKSYPDRLFVY-VGNALKA-----SLKDG 149 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p-~~~v--~~vEidp~~~~~a~---~~~~~~~~~~~~~~rv~~~-~~D~~~~-----~~~~~ 149 (269)
|.||=|.-+.+..|++++. +.+| |..|...++.+... .+.. . .....++++ --|+... ....+
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~--~---L~~~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLE--E---LRELGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHH--H---HhhcCCccccCCCCCcccccccccCCc
Confidence 5789999999999999876 4444 45555554444332 1111 1 012334443 3466665 24678
Q ss_pred eeEEEEcCCCCCCCC---------CCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 150 FSGILVDLFSKGSLL---------SELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 150 yD~I~~d~~~~~~~~---------~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
||.|+.+.+...... .......||+.+...|+++|.+.+.....
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999998765442110 01123589999999999999998877554
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.6 Score=38.81 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=61.3
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc---ccCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~---~~~~ 148 (269)
+.+..+||..|+ |.|..+..+++. .+.+|+++..+++-.+.+++ ++... -+..... +..+. ...+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~-~G~~Vi~~~~s~~~~~~~~~-lGa~~-------vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKL-KGCKVVGAAGSDEKVAYLKK-LGFDV-------AFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH-cCCCE-------EEeccccccHHHHHHHhCCC
Confidence 456789999984 467777777775 47789999999988888865 44311 0111000 11111 2234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+|+|+ |... .+.+..+.++|+++|.++..
T Consensus 207 gvdvv~-d~~G----------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYF-DNVG----------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEE-ECCC----------HHHHHHHHHHhCcCcEEEEe
Confidence 699987 4332 23568888999999999864
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.7 Score=45.49 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=48.9
Q ss_pred CCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 78 PGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
..+|+.+|+| .|......++. .+.+++++|.|++.++.+++. ..+++.||+.+. ..-++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 4689999988 34433333332 467999999999999988763 257899999876 2345888
Q ss_pred EEEEcCCC
Q 035593 152 GILVDLFS 159 (269)
Q Consensus 152 ~I~~d~~~ 159 (269)
++++...+
T Consensus 467 ~vvv~~~d 474 (621)
T PRK03562 467 VLINAIDD 474 (621)
T ss_pred EEEEEeCC
Confidence 88875443
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.69 Score=41.34 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~ 149 (269)
+.+..+||++|+| .|.++..+++.. +++ |++++.+++-.+.+++ ++... -+.....+.... .....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~-~ga~~-------~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA-LGADF-------VINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH-hCCCE-------EEcCCcchHHHHHHHhCCCC
Confidence 4568899999865 333444555543 566 9999999999888865 34211 011111111111 23347
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+|+ |... ....+..+.+.|+++|.+++-.
T Consensus 232 ~d~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAI-ECSG---------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEE-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 99997 3322 2456677788999999988643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.97 Score=41.39 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--ccccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~-~--~~~ 147 (269)
+.+..+||++|+| -|..+..+++.. ++ +|++++.+++-.+.+++ ++... -+.... .|..+ . ...
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~-~Ga~~-------~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKE-MGITD-------FINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHH-cCCcE-------EEecccccchHHHHHHHHhC
Confidence 4567899999875 344445566654 55 79999999999999976 34211 111110 01111 1 112
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
+.+|+|+ |... ..+.++...+.++++ |.+++-
T Consensus 267 ~g~dvvi-d~~G---------~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 267 GGVDYSF-ECAG---------NVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHhhhcCCCEEEEE
Confidence 2699887 4332 235777888889896 887663
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.95 Score=40.81 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=63.2
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
+.+..+||..|+ |-|.++.+|+++... .+.++=-+++-.+.+++... +.-+.+...|..+- ...+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA--------d~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA--------DHVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC--------CEEEcCCcccHHHHHHHHcCCC
Confidence 567899999995 456788888887644 55556566655556666532 11233333443222 3345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+|+|+ |.. ..+.+....+.|+++|.++....
T Consensus 211 gvDvv~-D~v----------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 211 GVDVVL-DTV----------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CceEEE-ECC----------CHHHHHHHHHHhccCCEEEEEec
Confidence 799998 322 35788889999999999988654
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.43 Score=41.35 Aligned_cols=108 Identities=21% Similarity=0.172 Sum_probs=63.3
Q ss_pred CCCcEEEEcCcccHHHHHHHH---HC--CCceEEEEECCh--------------------------HHHHHHHHhcCccc
Q 035593 77 PPGPIGILGFGAGSAARLILD---LY--PEAVIHGWELDP--------------------------SVIKVAREFFALEK 125 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~---~~--p~~~v~~vEidp--------------------------~~~~~a~~~~~~~~ 125 (269)
-|..|+++|+--|..+..++. .+ ++.+|.+.|.=+ ...+..+++|....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 488999999988876654432 22 345788887311 12344455543211
Q ss_pred cccCCCCcEEEEEcccccc---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 126 LEKSYPDRLFVYVGNALKA---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 126 ~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+++++++.|...+. .+.+++-++-+|+.- +. .+.+.++.++.+|.|||++++.-++.
T Consensus 154 ---l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---Ye---sT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 ---LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YE---STKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp ---TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HH---HHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred ---CCcccEEEECCcchhhhccCCCccEEEEEEeccc---hH---HHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 1246899999998775 345677777776431 11 16799999999999999999987654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.48 Score=41.64 Aligned_cols=89 Identities=22% Similarity=0.140 Sum_probs=56.9
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||+| +|+++..+.+ .+.+|+++|.+++.++.+.+.-. +.....+. ..-...|+|++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~~~~~~~a~~~g~-----------~~~~~~~~---~~~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRRESTCERAIERGL-----------VDEASTDL---SLLKDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHCCC-----------cccccCCH---hHhcCCCEEEEcC
Confidence 68899988 4667777766 36789999999998887765411 11111111 1124679999864
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
... ...++++.+...++++ .+++++.+
T Consensus 66 p~~-------~~~~~~~~l~~~l~~~-~ii~d~~S 92 (279)
T PRK07417 66 PIG-------LLLPPSEQLIPALPPE-AIVTDVGS 92 (279)
T ss_pred CHH-------HHHHHHHHHHHhCCCC-cEEEeCcc
Confidence 422 1356788888888775 55566654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.7 Score=37.80 Aligned_cols=100 Identities=15% Similarity=0.258 Sum_probs=59.4
Q ss_pred HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCCCCcH
Q 035593 91 AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDP 170 (269)
Q Consensus 91 ~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~ 170 (269)
+++.|.+..+..+|+++|.++..++.|++. +... . ...+ ...-..+|+|++..+-. ...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~---------~-~~~~---~~~~~~~DlvvlavP~~-------~~~ 59 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIID---------E-ASTD---IEAVEDADLVVLAVPVS-------AIE 59 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSS---------E-EESH---HHHGGCCSEEEE-S-HH-------HHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCee---------e-ccCC---HhHhcCCCEEEEcCCHH-------HHH
Confidence 467788876789999999999999998765 3210 1 1111 11124569999864322 157
Q ss_pred HHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 171 NTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 171 e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
++++++...|++| .+++.+.+. ...+++.+++..+..+.++
T Consensus 60 ~~l~~~~~~~~~~-~iv~Dv~Sv--------------K~~~~~~~~~~~~~~~~~v 100 (258)
T PF02153_consen 60 DVLEEIAPYLKPG-AIVTDVGSV--------------KAPIVEAMERLLPEGVRFV 100 (258)
T ss_dssp HHHHHHHCGS-TT-SEEEE--S---------------CHHHHHHHHHHHTSSGEEE
T ss_pred HHHHHhhhhcCCC-cEEEEeCCC--------------CHHHHHHHHHhcCccccee
Confidence 8999999988876 555666554 1345666777765344444
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.1 Score=39.98 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=59.3
Q ss_pred CcEEEEcC--cccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 79 GPIGILGF--GAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 79 ~~VL~iG~--G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.+||+.|+ |.|..+..+++.. ++ +|+++..+++-.+.+++.++... -+.....|..+. ...+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~-------vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDA-------AINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcE-------EEECCCCCHHHHHHHHCCCCceE
Confidence 79999986 4667777777764 66 89999999988888877665321 011111121111 12357999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+ |.... ..+..+.+.|+++|.++..
T Consensus 228 vi-d~~g~----------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YF-DNVGG----------EISDTVISQMNENSHIILC 253 (345)
T ss_pred EE-ECCCc----------HHHHHHHHHhccCCEEEEE
Confidence 97 43321 2357788899999998863
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.22 Score=42.18 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=47.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
...-|.+||-|.|.+++.+++. ...+..+||+|+..+.-.+-.... .+.+..++++|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA------a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA------APGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc------CCcceEEecccccee
Confidence 4678999999999999999984 356999999999887654432221 245899999999876
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.28 Score=41.89 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=39.5
Q ss_pred EEEEEcccccc---ccCCCeeEEEEcCCCCCCC----C----CC---CCcHHHHHHHHhhccCCcEEEEEe
Q 035593 134 LFVYVGNALKA---SLKDGFSGILVDLFSKGSL----L----SE---LEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 134 v~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~----~----~~---l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+++++|+.+. -++++.|+|+.|.+=.... . .. -+..+++++++++|||||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 36889999886 5678999999985332110 0 00 112467899999999999888754
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.8 Score=39.59 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=52.1
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++|..||+| +|+++..+.+. +..+.+++.++.-.+.++.. +... +.-...|.. ......|+||+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~-~~~~--------~~~~~~~~~--~~~~~aDlVila 67 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARAL-GFGV--------IDELAADLQ--RAAAEADLIVLA 67 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHh-cCCC--------CcccccCHH--HHhcCCCEEEEe
Confidence 368999998 67777777764 34555666666554443321 1110 000011111 123568999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHh-hccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQ-CLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~-~L~pgG~l~~~~~~~ 193 (269)
.... ...++++.+.. .++|+ .+++++.+.
T Consensus 68 vP~~-------~~~~vl~~l~~~~l~~~-~ivtDv~Sv 97 (359)
T PRK06545 68 VPVD-------ATAALLAELADLELKPG-VIVTDVGSV 97 (359)
T ss_pred CCHH-------HHHHHHHHHhhcCCCCC-cEEEeCccc
Confidence 5432 24678888877 47775 566666543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.2 Score=44.01 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=63.4
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-----cccccCC-------CCcEEEEEcccccc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-----EKLEKSY-------PDRLFVYVGNALKA 144 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-----~~~~~~~-------~~rv~~~~~D~~~~ 144 (269)
.+|..||+| ++.++..+++ .+.+|+++|++++.++.++++... ...+... -.++++. .|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~--- 77 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL--- 77 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH---
Confidence 469999999 6666676665 367999999999998765533210 0000000 0133322 222
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-+..|+|+....... ....++|+++.+.++|+.+++.|..+.
T Consensus 78 ~~~~~aDlVi~av~e~~-----~~k~~~~~~l~~~~~~~~il~s~ts~~ 121 (282)
T PRK05808 78 DDLKDADLVIEAATENM-----DLKKKIFAQLDEIAKPEAILATNTSSL 121 (282)
T ss_pred HHhccCCeeeecccccH-----HHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 12356799987543221 113589999999999998887777554
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.5 Score=38.61 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=54.6
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|+.||+|. +.++..|.+ .+.+|+.++.+++.++..++. ++.- .+........-..+....+.+|+|++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~-g~~~----~~~~~~~~~~~~~~~~~~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARRGAHLDALNEN-GLRL----EDGEITVPVLAADDPAELGPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECChHHHHHHHHc-CCcc----cCCceeecccCCCChhHcCCCCEEEEec
Confidence 689999883 334444444 357899999988777665543 2210 0011110000000111126899999864
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
... ...+.++.+...+.++..++.
T Consensus 75 k~~-------~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 75 KAY-------QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ccc-------cHHHHHHHHhhhcCCCCEEEE
Confidence 432 257889999998988766654
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.93 Score=41.84 Aligned_cols=106 Identities=16% Similarity=0.042 Sum_probs=64.4
Q ss_pred CcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEE
Q 035593 79 GPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGI 153 (269)
Q Consensus 79 ~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I 153 (269)
.+||.|||| -|..+.+.+.+....+|++.+.+++-.+.+.... ..+++.+.-|+.+. ..-..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---------cccceeEEecccChHHHHHHHhcCCEE
Confidence 589999995 2333333322223479999999988877776653 24789999998876 223456999
Q ss_pred EEcCCCCCCC-------------CCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSL-------------LSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~-------------~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+..+...... ...-+.++...++...-+..|+.++.-.+-
T Consensus 73 In~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~ 125 (389)
T COG1748 73 INAAPPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGF 125 (389)
T ss_pred EEeCCchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCc
Confidence 8755433211 000011223355666666778777766554
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.5 Score=39.14 Aligned_cols=97 Identities=8% Similarity=0.046 Sum_probs=63.0
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-cccc-c--ccC
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALK-A--SLK 147 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~-~--~~~ 147 (269)
.+.+..+||..|+ |-|..+..+++. .+++|+++..+++-.+.+++.++... -+..-.. |..+ . ...
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~-~G~~Vi~~~~~~~~~~~~~~~lGa~~-------vi~~~~~~~~~~~i~~~~~ 219 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKL-KGCYVVGSAGSDEKVDLLKNKLGFDD-------AFNYKEEPDLDAALKRYFP 219 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcCCce-------eEEcCCcccHHHHHHHhCC
Confidence 3556889999996 466666777775 47789999999998888887555321 0110011 2111 1 123
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+|+|+ |... ...+..+.++|+++|.++..
T Consensus 220 ~gvd~v~-d~~g----------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 220 NGIDIYF-DNVG----------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CCcEEEE-ECCC----------HHHHHHHHHHhccCcEEEEe
Confidence 5799987 4322 24678888999999998864
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.2 Score=39.93 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=59.6
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~ 148 (269)
+.+..+||+.|+| .|..+..+++.. +. .+++++.+++-.+.+++ ++... -+.....+... .....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~-~g~~~-------~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE-YGATD-------IVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCCce-------EecCCCCCHHHHHHHHhCCC
Confidence 4467899999765 344555566654 55 69999999988888876 44211 01111111111 12345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+|+|+- ... ..+.+..+.++|+++|.++.-
T Consensus 235 ~~d~vld-~~g---------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVII-AGG---------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEE-CCC---------CHHHHHHHHHHhhcCCEEEEe
Confidence 6998874 221 235788899999999988753
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.7 Score=40.61 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=58.7
Q ss_pred HHHHhc-CCCCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 66 FDAFAT-LPPILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 66 ~~~~~~-~~~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
++.++. .....+.++|+++|+|. |.....+++. -+++|+++|++|.-.+.|++. +.. ... ..+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~R~~~A~~~-G~~-----------~~~--~~e 253 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPICALQAAME-GYE-----------VMT--MEE 253 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChhhHHHHHhc-CCE-----------Ecc--HHH
Confidence 344432 23345789999999995 4444445553 367999999999988887763 321 111 111
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHH-HHhhccCCcEEEE
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEK-LRQCLRKGGRIMV 188 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~-~~~~L~pgG~l~~ 188 (269)
. -...|+|+.. .. ....+.. ..+.+++||+++.
T Consensus 254 ~--v~~aDVVI~a-tG---------~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 254 A--VKEGDIFVTT-TG---------NKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred H--HcCCCEEEEC-CC---------CHHHHHHHHHhcCCCCcEEEE
Confidence 1 1357988742 21 2345554 4788999887754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.7 Score=38.75 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=59.1
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+..+||+.|+|+ |..+..+++.. +. +|++++.+++..+.+++. +.... +.....+.... .....+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~-g~~~v-------i~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAM-GADET-------VNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-CCCEE-------EcCCchhhhhhhccCCCccEE
Confidence 678999988765 55666666654 65 899999999988877764 32110 00000111122 223459999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+-. .. ....++.+.+.|+++|.++..
T Consensus 236 ld~-~g---------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEA-SG---------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEC-CC---------CHHHHHHHHHHHhcCCEEEEE
Confidence 742 21 135678889999999998864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.3 Score=42.93 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=58.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..+|+.+|+| ..++.+.+.. .+.+++++|.|++.++.+++. ...++++|+.+. ..-++.
T Consensus 417 ~~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------------g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 417 CNHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------------GIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------------CCeEEEcCCCCHHHHHhcCcccc
Confidence 3688998876 3333333322 367899999999998888753 268899999875 234688
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|.+++...+.. .....-.+.+.+.|+-.++.-.
T Consensus 483 ~~viv~~~~~~-------~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 483 RWLLLTIPNGY-------EAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred CEEEEEcCChH-------HHHHHHHHHHHHCCCCeEEEEE
Confidence 98876543321 1122333345556776666655
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.1 Score=43.87 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=60.8
Q ss_pred CCcEEEEcCc-ccHH-HHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFG-AGSA-ARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G-~G~~-~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..+|+.+|+| -|.. ++.+.+ .+.+++++|.||+.++.+++. + ..++.||+.+. ..-++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-g-----------~~v~~GDat~~~~L~~agi~~A 465 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY-G-----------YKVYYGDATQLELLRAAGAEKA 465 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC-C-----------CeEEEeeCCCHHHHHhcCCccC
Confidence 3578888876 2332 233332 467999999999999988763 2 57899999875 234578
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++++...+.. .....-...+.+.|+..++.-..+
T Consensus 466 ~~vv~~~~d~~-------~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 466 EAIVITCNEPE-------DTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred CEEEEEeCCHH-------HHHHHHHHHHHHCCCCeEEEEeCC
Confidence 88887544321 112333344557788777776644
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.74 Score=39.22 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=48.1
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
.+++.+||| ++.+++.|.+ .+..|+++|.|++.++..... ..-.+++++|+.+. ..-..+|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~~~~~~~~~~----------~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRDEERVEEFLAD----------ELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcCHHHHHHHhhh----------hcceEEEEecCCCHHHHHhcCCCcCC
Confidence 368899998 5555666655 367999999999887763321 12378999999875 2356899
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+++....
T Consensus 69 ~vva~t~ 75 (225)
T COG0569 69 AVVAATG 75 (225)
T ss_pred EEEEeeC
Confidence 9987543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.86 Score=35.72 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=53.8
Q ss_pred EEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHh-cCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEc
Q 035593 81 IGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREF-FALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVD 156 (269)
Q Consensus 81 VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~-~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d 156 (269)
|+++|+| .|.+..+.++. .+.+|+.+.-.+ -.+..++. +.+.. ...+..+........ ...+.||+||+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQGLTITG----PDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHHCEEEEE----TTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhheeEEEEe----cccceecccccccCcchhccCCCcEEEEE
Confidence 6788887 23333333332 688999999988 44443332 21111 010011111110111 245789999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.-+. ...+.++.++..++++..+++-.
T Consensus 75 vKa~-------~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 75 VKAY-------QLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp SSGG-------GHHHHHHHHCTGEETTEEEEEES
T ss_pred eccc-------chHHHHHHHhhccCCCcEEEEEe
Confidence 4322 25789999999999997666543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.7 Score=37.54 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=67.7
Q ss_pred EEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeEEEEc
Q 035593 82 GILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSGILVD 156 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~I~~d 156 (269)
|..=.|+=.++..+++ +.-+...+|+.|+-.+.-+++|.- +.+++++..|+.+. .+.++=-+|++|
T Consensus 62 l~~YPGSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~-------~~~v~v~~~DG~~~l~allPP~~rRglVLID 132 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRR-------DRRVRVHHRDGYEGLKALLPPPERRGLVLID 132 (245)
T ss_dssp --EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--T-------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-
T ss_pred cCcCCCCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhcc-------CCccEEEeCchhhhhhhhCCCCCCCeEEEEC
Confidence 4444577777777766 677999999999999998888752 46899999999985 345567799998
Q ss_pred C-CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 157 L-FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 157 ~-~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
. |... ...-...+.+.++.++- +.|+++++..-. + ....+.+.+.|++.-...+..+
T Consensus 133 PpYE~~--~dy~~v~~~l~~a~kR~-~~G~~~iWYPi~---------~-~~~~~~~~~~l~~~~~~~~l~~ 190 (245)
T PF04378_consen 133 PPYEQK--DDYQRVVDALAKALKRW-PTGVYAIWYPIK---------D-RERVDRFLRALKALGIKKVLRA 190 (245)
T ss_dssp ----ST--THHHHHHHHHHHHHHH--TTSEEEEEEEES---------S-HHHHHHHHHHHHHH-SSE-EEE
T ss_pred CCCCCc--hHHHHHHHHHHHHHHhc-CCcEEEEEeecc---------c-HHHHHHHHHHHHhcCCCCeEEE
Confidence 5 2211 00111124444444443 579998877432 1 2346777888887643344444
|
; PDB: 2OO3_A. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.9 Score=39.22 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-cccccc-ccCCCeeE
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKA-SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~-~~~~~yD~ 152 (269)
.+..+||+.|+| -|..+..+++.. +++|++++.+++-...+.+.++.. .++. .+.... ...+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~----------~vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGAD----------SFLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCc----------EEEcCCCHHHHHhhcCCCCE
Confidence 467789998875 444555566653 678888888775543333334421 1110 111111 11125898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+ |... ....++.+.+.|+++|.++.-
T Consensus 251 vi-d~~g---------~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 251 II-DTVS---------AVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EE-ECCC---------CHHHHHHHHHHhcCCcEEEEe
Confidence 87 4332 234677888999999998764
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.46 Score=40.55 Aligned_cols=82 Identities=13% Similarity=0.009 Sum_probs=54.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc--c----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK--A----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~--~----~~~~~y 150 (269)
+..++||||.|.-.+=-.+-.+.=+.+.++-|||+..++.|+.....++.. ...+++..+.-.+ | ...++|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l---~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL---ERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch---hhheeEEeccCcccccccccccccee
Confidence 467899999987766544443323679999999999999999876543211 1235554433222 1 347899
Q ss_pred eEEEEcCCCCC
Q 035593 151 SGILVDLFSKG 161 (269)
Q Consensus 151 D~I~~d~~~~~ 161 (269)
|+.+++.+-+.
T Consensus 155 d~tlCNPPFh~ 165 (292)
T COG3129 155 DATLCNPPFHD 165 (292)
T ss_pred eeEecCCCcch
Confidence 99999765443
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.53 E-value=7.2 Score=33.76 Aligned_cols=123 Identities=20% Similarity=0.106 Sum_probs=85.1
Q ss_pred EEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeEEEEc
Q 035593 82 GILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSGILVD 156 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~I~~d 156 (269)
|..=+|+=.+++.+.+ +.-++...|+.|+=....++.|.. +.++++..+|+... .++++=-+|++|
T Consensus 93 l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~~DG~~~l~a~LPP~erRglVLID 163 (279)
T COG2961 93 LRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG-------DRRVRVLRGDGFLALKAHLPPKERRGLVLID 163 (279)
T ss_pred cccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC-------CcceEEEecCcHHHHhhhCCCCCcceEEEeC
Confidence 7777888899999887 677999999999999999999862 57999999999874 345567789998
Q ss_pred CCCCCCCCCC-CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 157 LFSKGSLLSE-LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 157 ~~~~~~~~~~-l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
..-. .... -...+.+++..++. ++|+.+++..-.. ...++.+.+.|++.=-..+..+
T Consensus 164 PPfE--~~~eY~rvv~~l~~~~kRf-~~g~yaiWYPik~----------r~~~~~f~~~L~~~~i~kiL~i 221 (279)
T COG2961 164 PPFE--LKDEYQRVVEALAEAYKRF-ATGTYAIWYPIKD----------RRQIRRFLRALEALGIRKILQI 221 (279)
T ss_pred CCcc--cccHHHHHHHHHHHHHHhh-cCceEEEEEeecc----------hHHHHHHHHHHhhcCccceeee
Confidence 5422 1111 11134555555554 5799998774332 3357778888877633344444
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.52 E-value=2.6 Score=37.71 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
+.+..+||+.|+| .|..+..+++.. +++|++++.+++-.+.|++. +.. .++. ..+ ...+.+|++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~-Ga~----------~vi~--~~~-~~~~~~d~~ 227 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL-GAA----------SAGG--AYD-TPPEPLDAA 227 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh-CCc----------eecc--ccc-cCcccceEE
Confidence 4567899999975 444555666653 67899999999988888774 321 1111 001 112357876
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+.... ..+.+....+.|+++|.+++--
T Consensus 228 i~~~~----------~~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAP----------AGGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCC----------cHHHHHHHHHhhCCCcEEEEEe
Confidence 63211 1257888889999999997643
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.8 Score=40.46 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
+..+|+.+|+| .++..+++.. .+.+++++|.||+.++..++.+ ..+.++.+|+.+. ..-++
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEEECCCCCHHHHHhcCCcc
Confidence 46889999985 4444444332 3679999999999888777653 2367899999765 23467
Q ss_pred eeEEEEcC
Q 035593 150 FSGILVDL 157 (269)
Q Consensus 150 yD~I~~d~ 157 (269)
+|+|++..
T Consensus 298 a~~vi~~~ 305 (453)
T PRK09496 298 ADAFIALT 305 (453)
T ss_pred CCEEEECC
Confidence 89988643
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.2 Score=39.30 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=59.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-----cccc---ccCC-------CCcEEEEEccc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-----LEKL---EKSY-------PDRLFVYVGNA 141 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-----~~~~---~~~~-------~~rv~~~~~D~ 141 (269)
++|..||+| ++.++..+++ .+.+|+++|.+++.++.+++... +... +... ..+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 579999999 4455555554 46799999999999987655321 1000 0000 0112221 121
Q ss_pred cccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 142 LKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 142 ~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..-...|+|+....... -...++++++.+.++++.+++.|..
T Consensus 81 ---~~~~~aDlVieav~e~~-----~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 81 ---ESLSDADFIVEAVPEKL-----DLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred ---HHhCCCCEEEEcCcCcH-----HHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 11245799987543221 1136788889888888887765553
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.20 E-value=2 Score=39.61 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=65.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEE----EEccc-ccc-c---cCC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFV----YVGNA-LKA-S---LKD 148 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~----~~~D~-~~~-~---~~~ 148 (269)
..+|-++|+|-=.++.++.-...+.+|+++|||+..++...+--..-. .+...- ....+ ... . .-.
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~-----e~~~~~~v~~~v~~g~lraTtd~~~l~ 83 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIE-----EPDLDEVVKEAVESGKLRATTDPEELK 83 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceee-----cCcHHHHHHHHHhcCCceEecChhhcc
Confidence 468999999977666665544457899999999998877543110000 010110 00000 011 1 123
Q ss_pred CeeEEEEcCCCCCCC---CCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 149 GFSGILVDLFSKGSL---LSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~---~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..|++++..+.+..- |..-+-...-+.+...|++|-.+++-...+
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~ 131 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP 131 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 789988876554221 222233577788889999988888876654
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.08 E-value=3.4 Score=37.41 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=56.8
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
.+..+||+.|+| .|..+..+++.. +.+++++..+++-.+.+.+.++... .+...+.... .....+|+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~~---------~i~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGADD---------YLVSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCcE---------EecCCChHHHHHhcCCCcEE
Confidence 467889999764 445555666653 6788889888877666666555311 1111111112 112358888
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+ |... ....++.+.+.|+++|.++..
T Consensus 249 i-d~~g---------~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 249 I-DTVP---------VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred E-ECCC---------chHHHHHHHHHhccCCEEEEE
Confidence 7 3321 134677788899999988764
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=2.3 Score=39.68 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=56.4
Q ss_pred CcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEE-----EEcccccc-ccCCCe
Q 035593 79 GPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFV-----YVGNALKA-SLKDGF 150 (269)
Q Consensus 79 ~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~-----~~~D~~~~-~~~~~y 150 (269)
.+|..||+|. +.++..|++ .+.+|+++|+|++.++..+.-. .+- ..+.+.- +....... ...+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~~~~v~~l~~g~-~~~----~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDINQHAVDTINRGE-IHI----VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCCHHHHHHHHCCC-CCc----CCCCHHHHHHHHhhcCceeeecccccC
Confidence 5799999994 444455554 3679999999999888643211 110 0011100 00000111 112368
Q ss_pred eEEEEcCCCCCCC---CCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSL---LSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~---~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+||+....+... +..-...+..+.+.+.|++|-+++...
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 9999887654211 111122456678888888865555443
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=90.88 E-value=2 Score=38.34 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCCCe
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~~y 150 (269)
.+..+||+.|+| .|..+..+++.....++.+++.++...+.+++. +.. .-+.....+..+ ....+.+
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~~-------~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GAT-------DIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CCc-------EEEcCCcchHHHHHHHHcCCCCC
Confidence 357788887654 355556666654324788999988888877753 211 011111111111 1233579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+ |... ....+..+.++|+++|.++.-
T Consensus 238 d~vl-d~~g---------~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVI-EAVG---------FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEE-EccC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 9887 3321 135788889999999988753
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.93 Score=40.84 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=62.5
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC--cccc---c---cCCCCcEEEEEccccccccC
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA--LEKL---E---KSYPDRLFVYVGNALKASLK 147 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~--~~~~---~---~~~~~rv~~~~~D~~~~~~~ 147 (269)
-++|.+||+| +..++..++. .+.+|+.+|++|+.++.++.+.. +..+ + .....++++.. |.. ..-
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~--~av 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE--ACV 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH--HHh
Confidence 4689999998 4445555554 58999999999998877655431 0000 0 00012333221 111 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
...|+|+-...... -...++|+.+-+.++|+-+|..|..+
T Consensus 82 ~~aDlViEavpE~l-----~vK~~lf~~l~~~~~~~aIlaSnTS~ 121 (321)
T PRK07066 82 ADADFIQESAPERE-----ALKLELHERISRAAKPDAIIASSTSG 121 (321)
T ss_pred cCCCEEEECCcCCH-----HHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 56788886433221 11358889999999998888777753
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=90.87 E-value=4.8 Score=29.93 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=54.8
Q ss_pred cEEEEcCcccHHH--HHHHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 80 PIGILGFGAGSAA--RLILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~G~~~--~~l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
+|..||+|...-. ..+.+..++.+++ ++|.+++-.+.+.+.++. . ...|..+.......|+|++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~-----------~-~~~~~~~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI-----------P-VYTDLEELLADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS-----------E-EESSHHHHHHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc-----------c-chhHHHHHHHhhcCCEEEEe
Confidence 6899999765333 2334433677765 689999988887776653 2 44566666444589999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
... ..-++.+...|+-|--+++
T Consensus 70 tp~----------~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 70 TPP----------SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp SSG----------GGHHHHHHHHHHTTSEEEE
T ss_pred cCC----------cchHHHHHHHHHcCCEEEE
Confidence 443 2244555556666554444
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.3 Score=39.40 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=59.8
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc----Cc-ccccc--CCCCcEEEEEccccccccCC
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFF----AL-EKLEK--SYPDRLFVYVGNALKASLKD 148 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~----~~-~~~~~--~~~~rv~~~~~D~~~~~~~~ 148 (269)
-++|..||+| ++.++..+++ .+.+|+++|.+++.++.+++.. +. ..... ....++++ ..|.. ..-+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~--~~~~ 78 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLA--AAVS 78 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHH--HHhc
Confidence 4679999999 4555566654 4679999999999988877642 11 00000 00011221 12211 1134
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..|+|+....... -...+++..+...++++-+++.+..+
T Consensus 79 ~aDlVi~av~~~~-----~~~~~v~~~l~~~~~~~~ii~s~tsg 117 (311)
T PRK06130 79 GADLVIEAVPEKL-----ELKRDVFARLDGLCDPDTIFATNTSG 117 (311)
T ss_pred cCCEEEEeccCcH-----HHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 6799997544321 01356888888777776666555543
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=8.5 Score=36.21 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=51.1
Q ss_pred cEEEEc-Cc-c-cHHHHHHHHHCCCceEEEEECChHHH-HHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 80 PIGILG-FG-A-GSAARLILDLYPEAVIHGWELDPSVI-KVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG-~G-~-G~~~~~l~~~~p~~~v~~vEidp~~~-~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+|+.|| +| . ++++..+.+ .+.+|++++.+++.. +.+++ .+ +. ...|.. ..-...|+|++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~--~G~~V~v~~r~~~~~~~~a~~-~g-----------v~-~~~~~~--e~~~~aDvVIl 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE--KGFEVIVTGRDPKKGKEVAKE-LG-----------VE-YANDNI--DAAKDADIVII 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH--CCCEEEEEECChHHHHHHHHH-cC-----------Ce-eccCHH--HHhccCCEEEE
Confidence 688997 45 2 344455544 356899999998775 33333 22 11 111211 11245799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..... ...+.++.+...++++. +++++.+
T Consensus 65 avp~~-------~~~~vl~~l~~~l~~~~-iViDvsS 93 (437)
T PRK08655 65 SVPIN-------VTEDVIKEVAPHVKEGS-LLMDVTS 93 (437)
T ss_pred ecCHH-------HHHHHHHHHHhhCCCCC-EEEEccc
Confidence 54322 13578888888887755 5566654
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.6 Score=40.02 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--cccccc---ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALKA---SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~~---~~~ 147 (269)
+.+..+||+.|+| -|.++..+++.. +. .|++++.+++-.+.|++. +... -+.... .+.... ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~l-Ga~~-------~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKTF-GVTD-------FINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc-CCcE-------EEcccccchHHHHHHHHHhC
Confidence 4568899999865 344445556654 55 689999999988888653 4211 011100 111111 112
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
+.+|+|+ |... ....+..+.+.|++| |.+++.
T Consensus 262 ~g~d~vi-d~~G---------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSF-ECVG---------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHhhccCCCEEEEE
Confidence 3689887 4322 234677788889998 998764
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=2.2 Score=37.59 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=53.1
Q ss_pred cEEEEcCccc--HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc-cc-ccCCCeeEEEE
Q 035593 80 PIGILGFGAG--SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL-KA-SLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G~G--~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~-~~-~~~~~yD~I~~ 155 (269)
+|+.||+|.- .++..|.+ .+.+|+.++. ++.++..++. ++.-.. ......+ ..... +. .....+|+|++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r-~~~~~~~~~~-g~~~~~--~~~~~~~-~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR-PKRAKALRER-GLVIRS--DHGDAVV-PGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH--CCCceEEEec-HHHHHHHHhC-CeEEEe--CCCeEEe-cceeecCHHHccCCCCEEEE
Confidence 6899999843 34445544 3568999998 6666655542 221100 0011111 00011 11 12367999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
..... ..++.++.+...++++.+++.
T Consensus 75 avk~~-------~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 75 AVKAY-------QLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred Eeccc-------CHHHHHHHHHhhcCCCCEEEE
Confidence 65432 257888999998988766553
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.95 Score=40.01 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=61.8
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-----ccccccCCC-------CcEEEEEccccc
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-----LEKLEKSYP-------DRLFVYVGNALK 143 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-----~~~~~~~~~-------~rv~~~~~D~~~ 143 (269)
-++|..||+| +..++..++. .+.+|+++|.+++.++.+++.+. +...+.... .+++ ...+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-- 78 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-- 78 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH--
Confidence 3579999998 4455555555 47899999999999876654321 000000000 0111 11222
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-...|+|+..+..... ....+|+++.+.++++.+++.|..+.
T Consensus 79 -~~~~~aD~Vieav~e~~~-----~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 79 -EELRDADFIIEAIVESED-----LKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred -HHhCCCCEEEEcCccCHH-----HHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 122457999976543211 13578888888899988877777554
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.5 Score=36.61 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=22.8
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECC
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELD 110 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEid 110 (269)
...+||.+|||+ |+ ++..|.+ ..-.+++.+|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCC
Confidence 467999999983 44 3444444 333589999988
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.4 Score=43.23 Aligned_cols=113 Identities=16% Similarity=0.082 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHH-------HhcCccccccCCCCcEEEEEcccccc--
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAR-------EFFALEKLEKSYPDRLFVYVGNALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~-------~~~~~~~~~~~~~~rv~~~~~D~~~~-- 144 (269)
.+.|++-|+|==.|||++....++ + ++.|.+-|||-.+++..| .+|.... + .+--+.+..+|...-
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~-F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg--~-~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAH-F-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYG--S-SSQFLDVLTADFSNPPL 279 (421)
T ss_pred ccCCCCEEecCccccCceeeehhh-h-cceeeccccchheeecccCCCcchhHhHHHhC--C-cchhhheeeecccCcch
Confidence 456788899988899998887776 3 789999999999988532 2221111 0 123477888887764
Q ss_pred ccCCCeeEEEEcCCCCCC-----------C--------CCCC-----Cc-----HHHHHHHHhhccCCcEEEEEec
Q 035593 145 SLKDGFSGILVDLFSKGS-----------L--------LSEL-----ED-----PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~-----------~--------~~~l-----~~-----~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+..||+|++|.+-+.. . ..|. +. -+.++-..++|..||+++++..
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 567899999999653310 0 0111 11 2567778899999999999775
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=90.44 E-value=1 Score=32.40 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=48.6
Q ss_pred cEEEEcCc--ccHHHHHHHHHC-CCceEEEE-ECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 80 PIGILGFG--AGSAARLILDLY-PEAVIHGW-ELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~-p~~~v~~v-Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+|..||+| +..+++.+.+.. ...+|..+ +.+++-++..++.++ +.+...+..+. -+..|+|++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-----------VQATADDNEEA--AQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-----------TEEESEEHHHH--HHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-----------cccccCChHHh--hccCCEEEE
Confidence 46778766 233334444421 22688855 999999888777654 22222222222 236899998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
..... ...+.++.+ ..+.++.+++
T Consensus 68 av~p~-------~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 68 AVKPQ-------QLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp -S-GG-------GHHHHHHHH-HHHHTTSEEE
T ss_pred EECHH-------HHHHHHHHH-hhccCCCEEE
Confidence 54332 145777777 5666655543
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.42 E-value=2.2 Score=38.18 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc----cc---cc
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN----AL---KA 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D----~~---~~ 144 (269)
.+.+..+||+.|+|+ |..+..+++.. +.+ |+++..+++-.+.+++ ++... -+.....+ .. +.
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~-~g~~~-------vi~~~~~~~~~~~~~~~~~ 229 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKE-LGATH-------TVNVRTEDTPESAEKIAEL 229 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH-cCCcE-------EeccccccchhHHHHHHHH
Confidence 355788999987654 55666666654 555 9999999888888765 33211 01111111 11 12
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+.+|+|+-. .. ....+..+.+.|+++|.++.-.
T Consensus 230 ~~~~~~d~vld~-~g---------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 230 LGGKGPDVVIEC-TG---------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred hCCCCCCEEEEC-CC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 334569999842 21 1347888899999999987543
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=90.38 E-value=3.2 Score=38.77 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=55.8
Q ss_pred cEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeE
Q 035593 80 PIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSG 152 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~ 152 (269)
+|+.+|+ |.++..+.+.. .+..|+++|.|++.++.+++.. .++++.+|+.+. ..-+.+|.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~a~~ 68 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-----------DVRTVVGNGSSPDVLREAGAEDADL 68 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-----------CEEEEEeCCCCHHHHHHcCCCcCCE
Confidence 6888887 56665555532 3679999999999887766532 378888998764 22467998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
|++...+.. ...+.....+.+.|.-.+++
T Consensus 69 vi~~~~~~~-------~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 69 LIAVTDSDE-------TNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEEecCChH-------HHHHHHHHHHHhcCCCeEEE
Confidence 887543221 22334445555544443333
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.97 Score=39.53 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||+| ++.++..+.+.....+|+++|.+++-.+.+++. +.. .. ..+..+. . ..|+||+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~----------~~-~~~~~~~--~-~aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV----------DE-IVSFEEL--K-KCDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC----------cc-cCCHHHH--h-cCCEEEEeC
Confidence 58899988 366777776532235899999999887776542 211 00 0121111 2 389999865
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.... ..+.+..+.. ++++. +++.+.+
T Consensus 67 p~~~-------~~~~~~~l~~-l~~~~-iv~d~gs 92 (275)
T PRK08507 67 PVDA-------IIEILPKLLD-IKENT-TIIDLGS 92 (275)
T ss_pred cHHH-------HHHHHHHHhc-cCCCC-EEEECcc
Confidence 4321 4567777777 77765 4455543
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.52 Score=39.27 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
+...|||-=+|+|+.+.++.+ -+-+..++|++++.+++|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~--l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEE--LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHH--TT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHH--cCCeEEEEeCCHHHHHHhcC
Confidence 578999999999999999887 47789999999999999975
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.2 Score=39.32 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=62.0
Q ss_pred CCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc-----ccccCC-------CCcEEEEEccccc
Q 035593 78 PGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE-----KLEKSY-------PDRLFVYVGNALK 143 (269)
Q Consensus 78 ~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~-----~~~~~~-------~~rv~~~~~D~~~ 143 (269)
-++|..||+|. ..++..+++ .+.+|+.+|.+++.++.+.+..... ..+... -.++++. .|.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH--
Confidence 46799999983 344455544 4679999999999988765432100 000000 0123322 222
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-...|+|+...+... -....+|+.+...++++.+++.|..+.
T Consensus 79 -~~~~~aD~Vieavpe~~-----~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 79 -EDLADCDLVIEAATEDE-----TVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred -HHhcCCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 12346799997554321 113578889999999988887666543
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=90.22 E-value=2.9 Score=37.04 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=57.6
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+|. +.++..+++ .+.+|.+.+.+++.++.+++. +... ..+..+. ..-...|+|++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~~~~~~l~~~-g~~~------------~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQDAVKAMKED-RTTG------------VANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHc-CCcc------------cCCHHHHHhhcCCCCEEEEE
Confidence 588899884 345555555 467899999999887776653 2110 0122222 222457999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+. ...+.++.+...|++| .+++++.+.
T Consensus 67 vp~~-------~~~~v~~~l~~~l~~g-~ivid~st~ 95 (298)
T TIGR00872 67 VPHG-------IVDAVLEELAPTLEKG-DIVIDGGNS 95 (298)
T ss_pred cCch-------HHHHHHHHHHhhCCCC-CEEEECCCC
Confidence 5432 2567888888888875 566777554
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.20 E-value=2.4 Score=33.93 Aligned_cols=91 Identities=15% Similarity=0.209 Sum_probs=50.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|-.||+| +..+++.|++ .+.+|++.|.+++..+...+. + ++.. .+..+. -+..|+|++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~~~~~~~~~~~-g-----------~~~~-~s~~e~--~~~~dvvi~~ 64 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRSPEKAEALAEA-G-----------AEVA-DSPAEA--AEQADVVILC 64 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESSHHHHHHHHHT-T-----------EEEE-SSHHHH--HHHBSEEEE-
T ss_pred CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccchhhhhhhHHh-h-----------hhhh-hhhhhH--hhcccceEee
Confidence 368889987 3334444444 478999999999877765543 1 2222 233333 1234999987
Q ss_pred CCCCCCCCCCCCcHHHHHH--HHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEK--LRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~--~~~~L~pgG~l~~~~~~~ 193 (269)
+.+.. ..++.+.. +...|++ |.+++++...
T Consensus 65 v~~~~------~v~~v~~~~~i~~~l~~-g~iiid~sT~ 96 (163)
T PF03446_consen 65 VPDDD------AVEAVLFGENILAGLRP-GKIIIDMSTI 96 (163)
T ss_dssp SSSHH------HHHHHHHCTTHGGGS-T-TEEEEE-SS-
T ss_pred cccch------hhhhhhhhhHHhhcccc-ceEEEecCCc
Confidence 65432 13466666 7777766 5555676554
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.19 E-value=3 Score=41.46 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=54.6
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+.+|..||+| +|.++..+.+ .+.+|++++.+... +.|++ ++ +.. ..|..+. .....|+|++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~~~-~~A~~-~G-----------v~~-~~d~~e~-~~~~aDvViL 114 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLIS--QGHTVLAHSRSDHS-LAARS-LG-----------VSF-FLDPHDL-CERHPDVILL 114 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCCHHH-HHHHH-cC-----------CEE-eCCHHHH-hhcCCCEEEE
Confidence 5789999998 4666777665 25789999998543 33333 22 221 2232222 1134799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHH-hhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLR-QCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~-~~L~pgG~l~~~~~~~ 193 (269)
..... ...++++.+. ..+++ |.+++++.+.
T Consensus 115 avP~~-------~~~~vl~~l~~~~l~~-g~iVvDv~Sv 145 (667)
T PLN02712 115 CTSII-------STENVLKSLPLQRLKR-NTLFVDVLSV 145 (667)
T ss_pred cCCHH-------HHHHHHHhhhhhcCCC-CeEEEECCCC
Confidence 64321 2456777765 45666 4577888654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.59 Score=41.23 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=39.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+...|||-=+|+|+.+.++.+ -+-+..++|++++.+++|++++.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~--lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKA--SGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHH
Confidence 578899999999999998887 47899999999999999999974
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.00 E-value=2.4 Score=37.78 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=61.2
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCCC
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~~ 149 (269)
+.+..+||+.|+|. |..+..+++. .+.+|+++..+++..+.++++ +... -+.....+..+ ....+.
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~-~g~~v~~~~~s~~~~~~~~~~-g~~~-------v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKA-RGARVIVVDIDDERLEFAREL-GADD-------TINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCeEEEECCCHHHHHHHHHh-CCCE-------EecCcccCHHHHHHHHhCCCC
Confidence 45678999998763 5666667765 478999999999988887553 3211 11111112111 123456
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+.... ..+.+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g----------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG----------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC----------CHHHHHHHHHHHhcCCEEEEE
Confidence 999984321 245778889999999998754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.79 E-value=4.7 Score=35.32 Aligned_cols=91 Identities=13% Similarity=0.217 Sum_probs=56.0
Q ss_pred CcEEEEcCc--ccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
.+|..|||| ++.++..|.+.. +..+|++.+.+++-++.+.+.++ ++. ..|..+. -...|+||
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g-----------~~~-~~~~~e~--~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG-----------ITI-TTNNNEV--ANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC-----------cEE-eCCcHHH--HhhCCEEE
Confidence 369999998 556666666532 23479999999987776555333 221 1232222 23569999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+...+. ...+.++.+...++++ .+++.+.
T Consensus 69 LavkP~-------~~~~vl~~l~~~~~~~-~lvISi~ 97 (272)
T PRK12491 69 LSIKPD-------LYSSVINQIKDQIKND-VIVVTIA 97 (272)
T ss_pred EEeChH-------HHHHHHHHHHHhhcCC-cEEEEeC
Confidence 865422 1457778888777664 5556654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=89.76 E-value=2.7 Score=39.83 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECCh----HHHHHHHHhcCccccccCCCCcEEEEEccc-ccc-ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDP----SVIKVAREFFALEKLEKSYPDRLFVYVGNA-LKA-SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp----~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~-~~~-~~~~~yD 151 (269)
-.+|+|..+|.|+++.+|.+ .| |.+.-.-| ..+.+.-.+ |+ +-++ -|- ..| +-+.+||
T Consensus 366 iRNVMDMnAg~GGFAAAL~~-~~---VWVMNVVP~~~~ntL~vIydR-GL----------IG~y-hDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALID-DP---VWVMNVVPVSGPNTLPVIYDR-GL----------IGVY-HDWCEAFSTYPRTYD 429 (506)
T ss_pred eeeeeeecccccHHHHHhcc-CC---ceEEEecccCCCCcchhhhhc-cc----------chhc-cchhhccCCCCcchh
Confidence 57899999999999999976 34 33333222 222221111 00 1111 122 223 4578999
Q ss_pred EEEEcC-CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDL-FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~-~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|-.+. |+. ..........+-++-+.|+|+|.+++--
T Consensus 430 LlHA~~lfs~--~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 430 LLHADGLFSL--YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred heehhhhhhh--hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 997653 322 2233445789999999999999998844
|
; GO: 0008168 methyltransferase activity |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.54 Score=38.79 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=54.0
Q ss_pred cEEEEcCccc--HHHHHHHHHCCCceEEEEECChHHHHHHHHhc-Cccc--cc-----cCCCCcEEEEEccccccccCCC
Q 035593 80 PIGILGFGAG--SAARLILDLYPEAVIHGWELDPSVIKVAREFF-ALEK--LE-----KSYPDRLFVYVGNALKASLKDG 149 (269)
Q Consensus 80 ~VL~iG~G~G--~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~-~~~~--~~-----~~~~~rv~~~~~D~~~~~~~~~ 149 (269)
+|-++|+|-= .++..+++ .+.+|+++|+|++.++..++-. .+.+ +. .....|+++. .|.. ..-..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~--~ai~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAE--KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIE--EAIKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHH--HHHHH
T ss_pred EEEEECCCcchHHHHHHHHh--CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhh--hhhhc
Confidence 6889999943 33344444 5789999999999998876532 1111 00 0002233322 1111 11346
Q ss_pred eeEEEEcCCCCCC---CCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 150 FSGILVDLFSKGS---LLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~---~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.|++|+....+.. .+..-+-.+..+.+.+.|+++-++++-..-
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 8899887643321 111222357888889999996666665443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.81 Score=40.46 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=63.0
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--cccc---cC-------CCCcEEEEEcccccc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKLE---KS-------YPDRLFVYVGNALKA 144 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~~---~~-------~~~rv~~~~~D~~~~ 144 (269)
.+|-.||+| ++.++..++. .+.+|+.+|.+|+.++.++++... ..+. .. .-.++++ ..|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~--- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL--- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH---
Confidence 589999998 5555555554 588999999999999887655321 0000 00 0012222 1222
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhc-cCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL-RKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L-~pgG~l~~~~~~~ 193 (269)
..-...|+|+-..+... -...++|..+-+.+ +|+.+++.|..+.
T Consensus 80 ~~~~~~d~ViEav~E~~-----~~K~~l~~~l~~~~~~~~~il~snTS~~ 124 (286)
T PRK07819 80 GDFADRQLVIEAVVEDE-----AVKTEIFAELDKVVTDPDAVLASNTSSI 124 (286)
T ss_pred HHhCCCCEEEEecccCH-----HHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 12256789886543321 11357888888888 7888888777553
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.8 Score=42.09 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCcEEEEcC-c--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 78 PGPIGILGF-G--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~-G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..+|+.||+ | +|++++.+.+. .+.+|+++|.+.+ .. .+.. ..-...|+|+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d~-------~~-----------------~~~~--~~v~~aDlVi 56 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPADP-------GS-----------------LDPA--TLLQRADVLI 56 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCcc-------cc-----------------CCHH--HHhcCCCEEE
Confidence 568999999 8 78888888875 3779999997410 00 0111 1134689999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhh---ccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQC---LRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~---L~pgG~l~~~~~~~ 193 (269)
+..+-. ...++++++... |+| |.+++.+.+.
T Consensus 57 lavPv~-------~~~~~l~~l~~~~~~l~~-~~iVtDVgSv 90 (370)
T PRK08818 57 FSAPIR-------HTAALIEEYVALAGGRAA-GQLWLDVTSI 90 (370)
T ss_pred EeCCHH-------HHHHHHHHHhhhhcCCCC-CeEEEECCCC
Confidence 865422 246788888775 566 7777888765
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.44 E-value=9.2 Score=33.23 Aligned_cols=136 Identities=21% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC----ceEEEEECChHHHHHHHHhcC--ccccccCCCCcEEEEEcccccc--ccCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE----AVIHGWELDPSVIKVAREFFA--LEKLEKSYPDRLFVYVGNALKA--SLKD 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~----~~v~~vEidp~~~~~a~~~~~--~~~~~~~~~~rv~~~~~D~~~~--~~~~ 148 (269)
-+...+++|.|+..=++.|+..+.. .+.+.+|++..+++...+-.. .+. -.+.-+.+|.... ..++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~------l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG------LEVNALCGDYELALAELPR 151 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC------CeEeehhhhHHHHHhcccC
Confidence 3678999999999999888876643 699999999999875443321 111 1356666776543 2222
Q ss_pred CeeEEEEcCCCCCCCCCCC---CcHHHHHHHHhhccCCcEEEEEecCCCc------cccccccchhHHHHHHHHHHHHHh
Q 035593 149 GFSGILVDLFSKGSLLSEL---EDPNTWEKLRQCLRKGGRIMVNVGGSCV------EAEDSRRDGKVVMEATLKAMHKVF 219 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l---~~~e~~~~~~~~L~pgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~F 219 (269)
.---+++-+-+ ....+ ....|+..++..|+||-.+.+-+--... .|.++.+-...+...+++.+.++|
T Consensus 152 ~~~Rl~~flGS---tlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvLa~lNr~f 228 (321)
T COG4301 152 GGRRLFVFLGS---TLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVLAHLNRVF 228 (321)
T ss_pred CCeEEEEEecc---cccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccchHHHHHHHHHHHHHHHh
Confidence 11222221111 11112 1357999999999999988875532211 112333333456667888888888
Q ss_pred cC
Q 035593 220 GK 221 (269)
Q Consensus 220 ~~ 221 (269)
+.
T Consensus 229 ~~ 230 (321)
T COG4301 229 GG 230 (321)
T ss_pred cc
Confidence 64
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.43 E-value=3.7 Score=37.37 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=59.1
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--ccccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~-~--~~~ 147 (269)
+.+..+||+.|+| .|.++..+++.. ++ +|++++.+++-.+.+++ ++... -+.... .+..+ . ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~-~Ga~~-------~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKK-LGATD-------CVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-hCCCe-------EEcccccchhHHHHHHHHhC
Confidence 4568899999875 345556666654 55 89999999999999866 34211 011110 11111 1 112
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
..+|+|+ |... ....+..+.+.|+++ |.+++-.
T Consensus 254 ~g~d~vi-d~~G---------~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 GGVDYSF-ECIG---------NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCEEE-ECCC---------CHHHHHHHHHHhhcCCCeEEEEe
Confidence 3689887 4322 135677778889886 9887644
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.4 Score=36.63 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=41.1
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+++||++|.= +|.....++. ...+|+++||+|.+-.. ++ +++++... +. ...+.||+|+
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls--~~~~vtv~Di~p~~r~~------lp-------~~v~Fr~~--~~-~~~G~~Dliv- 104 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLS--KADKVTVVDIHPFMRGF------LP-------NNVKFRNL--LK-FIRGEVDLIV- 104 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhc--ccceEEEecCCHHHHhc------CC-------CCccHhhh--cC-CCCCceeEEE-
Confidence 58999999974 6666666665 37899999999976332 22 23433322 11 4566788886
Q ss_pred cCCC
Q 035593 156 DLFS 159 (269)
Q Consensus 156 d~~~ 159 (269)
|...
T Consensus 105 DlTG 108 (254)
T COG4017 105 DLTG 108 (254)
T ss_pred eccc
Confidence 5443
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=5 Score=35.57 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=59.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-ccc-ccc-ccCCCe
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNA-LKA-SLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~-~~~-~~~~~y 150 (269)
+.+..+||+.|+| .|..+..+++...+.+|+++.-+++-.+.+++ ++... -+.... .+. ... ...+.+
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~~~-------v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGADL-------TINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCCcE-------EecccccccHHHHHHHhcCCC
Confidence 4568899999954 34444555554347799999999999999855 44321 011000 111 111 122257
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|.++.+.. ..+.++.+.++|+++|.++.-
T Consensus 232 d~vi~~~~----------~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 232 HAAVVTAV----------AKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred cEEEEeCC----------CHHHHHHHHHhccCCCEEEEE
Confidence 86665532 246788899999999998763
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.27 E-value=2.1 Score=37.70 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=60.2
Q ss_pred CcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc------cccccC-C------CCcEEEEEccccc
Q 035593 79 GPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL------EKLEKS-Y------PDRLFVYVGNALK 143 (269)
Q Consensus 79 ~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~------~~~~~~-~------~~rv~~~~~D~~~ 143 (269)
.+|.+||+|. ..++..+++ .+.+|+.+|++++.++.+++.... ...... . ..++++. .|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHH
Confidence 5799999983 344444444 467999999999988887654210 000000 0 0233322 22221
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.-...|+|+...+... -...++++++...++++-+++.|..+
T Consensus 81 --a~~~aDlVieavpe~~-----~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 81 --AVKDADLVIEAVPEDP-----EIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred --HhcCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCCEEEECccc
Confidence 1346799987554321 01357888888888887777666543
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=89.25 E-value=4.2 Score=36.95 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=58.9
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--ccccc---ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALKA---SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~~---~~~ 147 (269)
+.+..+||++|+| .|.++..+++.. ++ +|++++.+++-.+.+++ ++... -+..... |..+. ...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~-lGa~~-------~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK-FGATD-------CVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCCCE-------EEcccccchHHHHHHHHHhC
Confidence 4568899999864 344445566654 56 79999999999998865 44211 0111111 11111 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
..+|+|+ |... ....+..+.+.|+++ |.++.--
T Consensus 255 ~g~d~vi-d~~g---------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTF-ECIG---------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEE-ECCC---------ChHHHHHHHHhhccCCCeEEEEc
Confidence 3799987 4322 135778888899887 8887643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=89.21 E-value=3.8 Score=37.95 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=61.1
Q ss_pred CCCCcEEEEcC--cccHHHHHHHHHCC-C-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE----cccccc---
Q 035593 76 LPPGPIGILGF--GAGSAARLILDLYP-E-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV----GNALKA--- 144 (269)
Q Consensus 76 ~~~~~VL~iG~--G~G~~~~~l~~~~p-~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~----~D~~~~--- 144 (269)
.+..+||++|+ +-|.++..+++... + .+|++++.+++-++.+++.++..... ......++. .|..+.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~--~Ga~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS--RGIELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc--cCceEEEECCCccccHHHHHHH
Confidence 45678999973 36667777777542 2 37999999999999998864311000 000112221 111111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+|+.... ....+..+.+.|+++|.+++.
T Consensus 252 ~t~g~g~D~vid~~g----------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 252 LTGGQGFDDVFVFVP----------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HhCCCCCCEEEEcCC----------CHHHHHHHHHHhccCCeEEEE
Confidence 23346998885321 135778888899988866553
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.64 Score=36.84 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=51.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~ 152 (269)
+.-||++|.|.|..=-+|.+.+|+.+|.++|---.. + +. ...+.-.++.||+++. ....+.-+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~------h---p~---~~P~~~~~ilGdi~~tl~~~~~~g~~a~l 96 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALAC------H---PS---STPPEEDLILGDIRETLPALARFGAGAAL 96 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S----------GG---G---GGGEEES-HHHHHHHHHHH-S-EEE
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeeccc------C---CC---CCCchHheeeccHHHHhHHHHhcCCceEE
Confidence 678999999999999999999999999999973211 1 10 0123457888999875 23445555
Q ss_pred EEEcCCCCCCCCCCCCcHHHH-HHHHhhccCCcEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTW-EKLRQCLRKGGRIMV 188 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~-~~~~~~L~pgG~l~~ 188 (269)
+-.|.-.+.. .....+..++ ..+...|.|||+++-
T Consensus 97 aHaD~G~g~~-~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 97 AHADIGTGDK-EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEE----S-H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 6566543310 0011111222 245678999998875
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.4 Score=35.00 Aligned_cols=63 Identities=19% Similarity=0.102 Sum_probs=45.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
+..+.+|||.|.|.+..+.+++. -..-++||+||=.+..+|-+.=-.. ...+.++..-|...+
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g----~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG----CAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh----cccchhhhhhhhhhc
Confidence 46899999999999999988853 4578999999999998875531000 124566666666555
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=89.05 E-value=4.4 Score=36.23 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=53.0
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHH-HHHHHhcCccccccCCCCcEEEEE-ccccccccCCCeeEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVI-KVAREFFALEKLEKSYPDRLFVYV-GNALKASLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~-~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~~~~~~yD~I 153 (269)
+..+|+.+|+| .|......+......+|++++.+++-. ++|++ ++. .++. .|.. ..-..+|+|
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~-----------~~~~~~~~~--~~l~~aDvV 242 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-LGG-----------NAVPLDELL--ELLNEADVV 242 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCC-----------eEEeHHHHH--HHHhcCCEE
Confidence 47899999986 233222222222346899999998754 55554 331 1111 1211 222458999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|.....+. ..+.+..+.+....+|.+++++..|
T Consensus 243 i~at~~~~-------~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 243 ISATGAPH-------YAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EECCCCCc-------hHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 97543321 1344555444444468899988754
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=88.91 E-value=4.8 Score=34.60 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=58.7
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.+.+..+||+.|+|. |..+..+++.. +.+ |++++.+++..+.+++. +.. ..+ .... ........+|
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~-g~~-------~~~--~~~~-~~~~~~~~~d 161 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEAL-GPA-------DPV--AADT-ADEIGGRGAD 161 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHc-CCC-------ccc--cccc-hhhhcCCCCC
Confidence 345678999998764 55555566654 566 99999999988887764 310 001 0000 0112344689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+.... .........+.|+++|.++.-
T Consensus 162 ~vl~~~~----------~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASG----------SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccC----------ChHHHHHHHHHhcCCcEEEEE
Confidence 8874222 135678888899999998754
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=2.8 Score=35.72 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=60.9
Q ss_pred hHHHHHhcCCCCC--CCCcEEEEcCcccHHHH--HHHHHCCCceEEEE--ECChHHHHHHHHhcCccccccCCCCcEEEE
Q 035593 64 TYFDAFATLPPIL--PPGPIGILGFGAGSAAR--LILDLYPEAVIHGW--ELDPSVIKVAREFFALEKLEKSYPDRLFVY 137 (269)
Q Consensus 64 ~y~~~~~~~~~l~--~~~~VL~iG~G~G~~~~--~l~~~~p~~~v~~v--Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~ 137 (269)
.|.+.+-.+|... ..++||+||+|.=..-+ .|++ -+++|++| |+++++.++++ ..+++++
T Consensus 9 ~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~i~~el~~l~~------------~~~i~~~ 74 (223)
T PRK05562 9 IYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKKFSKEFLDLKK------------YGNLKLI 74 (223)
T ss_pred HhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCCCHHHHHHHh------------CCCEEEE
Confidence 3444444444433 47799999988766543 2333 25556655 88888877643 2357777
Q ss_pred EccccccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 138 VGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 138 ~~D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+...- .-..+++|+.... .++.=+.+++..+..|+++.++.
T Consensus 75 ~r~~~~~-dl~g~~LViaATd----------D~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 75 KGNYDKE-FIKDKHLIVIATD----------DEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred eCCCChH-HhCCCcEEEECCC----------CHHHHHHHHHHHHHcCCeEEEcC
Confidence 6543321 2245788876432 24566666666666677766553
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=88.79 E-value=6 Score=35.29 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=57.7
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc----ccccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL----KASLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~----~~~~~~~ 149 (269)
+.+..+||..|+| .|..+..+++.....+|++++.++.-.+.+++. +... -+.....+.. .......
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~~-------~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GATH-------TVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCCc-------eeccccccHHHHHHHHhCCCC
Confidence 4567889997654 233334455544337899999999888877753 3211 1111112211 1123456
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+ |... ....++.+.+.|+++|.++..
T Consensus 236 ~d~vl-d~~g---------~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVI-EAVG---------IPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEE-ECCC---------CHHHHHHHHHhccCCcEEEEe
Confidence 99987 3321 235678888999999998753
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.75 E-value=2.6 Score=38.54 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cc----ccc
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NA----LKA 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~----~~~ 144 (269)
.+.+..+||+.|+| .|..+..+++.. +. +|++++.+++-.+++++ ++... -+..... +. .+.
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~~-~g~~~-------~v~~~~~~~~~~~~~v~~~ 270 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKE-MGADY-------VFNPTKMRDCLSGEKVMEV 270 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH-cCCCE-------EEcccccccccHHHHHHHh
Confidence 34567889998764 223334455543 55 79999999987777776 34311 0111100 11 112
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+.+|+|+ |.... ....+..+.+.|+++|.++.-
T Consensus 271 ~~g~gvDvvl-d~~g~--------~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 271 TKGWGADIQV-EAAGA--------PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred cCCCCCCEEE-ECCCC--------cHHHHHHHHHHHHcCCEEEEE
Confidence 3345699887 44321 235678888899999998764
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.5 Score=35.00 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=57.9
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc-cc-cCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK-LE-KSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~-~~-~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|.+||+|.+..+....-...+.+|+....+++.++..++.-.... .. ..-.+++.+ ..|..+. -+..|+|++-.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a--~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA--LEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH--HTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH--hCcccEEEecc
Confidence 5889999977766544332246799999999988877665432100 00 000123443 3444332 24568999854
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++. ..++++++++..|++ |..++++..
T Consensus 78 Ps~-------~~~~~~~~l~~~l~~-~~~ii~~~K 104 (157)
T PF01210_consen 78 PSQ-------AHREVLEQLAPYLKK-GQIIISATK 104 (157)
T ss_dssp -GG-------GHHHHHHHHTTTSHT-T-EEEETS-
T ss_pred cHH-------HHHHHHHHHhhccCC-CCEEEEecC
Confidence 432 247899999999966 445555543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=88.71 E-value=8.6 Score=33.88 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=71.9
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---cCCCeeEEEEc
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---LKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~~~~yD~I~~d 156 (269)
+++++=||.|.+..-+.+. .--.+.++|+|+...+.-+.+++ .++.+|..++. -++..|+|+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~~l~~~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP------------EVICGDITEIDPSDLPKDVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHHHHHHT-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc------------ccccccccccccccccccceEEEec
Confidence 6899999999999998873 23479999999999998888762 77889999871 11169999865
Q ss_pred CCCCC----CC----CC--CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 157 LFSKG----SL----LS--ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 157 ~~~~~----~~----~~--~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
.+-.. .. .. .-.-.++++.+ +.++|.-+++=|+.+-.. . .....+..+++.|.+
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~~ENV~~l~~-----~-~~~~~~~~i~~~l~~ 132 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFLLENVPGLLS-----S-KNGEVFKEILEELEE 132 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEEEEEEGGGGT-----G-GGHHHHHHHHHHHHH
T ss_pred cCCceEeccccccccccccchhhHHHHHHH-hhccceEEEecccceeec-----c-ccccccccccccccc
Confidence 43221 10 00 10112444444 557897777778865422 0 112345666666655
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.33 E-value=2 Score=40.82 Aligned_cols=107 Identities=11% Similarity=-0.018 Sum_probs=58.4
Q ss_pred cEEEEcCcccHHHHH--HHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE----Eccccccc-----cCC
Q 035593 80 PIGILGFGAGSAARL--ILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY----VGNALKAS-----LKD 148 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~--l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~----~~D~~~~~-----~~~ 148 (269)
+|.+||+|...++.. ++++..+.+|+++|+|++.++..++-.. +- ..+.+.-+ .+.-..+. .-.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~-~~----~e~gl~ell~~~~~~~l~~t~~~~~~i~ 77 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL-PI----YEPGLDEVVKQCRGKNLFFSTDVEKHVA 77 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC-cc----CCCCHHHHHHHhhcCCEEEEcCHHHHHh
Confidence 689999996655544 4442235789999999999988765421 10 00111100 01001111 124
Q ss_pred CeeEEEEcCCCCCC--------CCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGS--------LLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~--------~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.-|+||+....+.. .+..-+-.+..+.+.+.|++|-++++-..
T Consensus 78 ~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 78 EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 57899887643321 11111235777888888887555554443
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=4.1 Score=36.57 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=51.2
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc---ccccCCCeeEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL---KASLKDGFSGI 153 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~---~~~~~~~yD~I 153 (269)
.+|..||+| ++.++..|++ .+.+|+.++.++.. +..++. +..... ....+......... +......+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~~~~-~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRARIG-DELRAH-GLTLTD-YRGRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecHHHH-HHHHhc-Cceeec-CCCcceecccceeEeccChhhccCCCEE
Confidence 369999998 4455555555 36789999987643 333332 211000 00001111000000 01223579999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
++...... ..+.++.+...++++-+++
T Consensus 78 il~vk~~~-------~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 78 LVTVKSAA-------TADAAAALAGHARPGAVVV 104 (341)
T ss_pred EEEecCcc-------hHHHHHHHHhhCCCCCEEE
Confidence 98653321 3678888888887766543
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=88.25 E-value=7.8 Score=34.22 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
+.+..+||++|+| .|..+..+++. .+.+|+++..+++..+.+++ ++.. .++..+-... ...+.+|
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~-~g~~----------~~~~~~~~~~~~~~~~~~d 227 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARA-MGFETVAITRSPDKRELARK-LGAD----------EVVDSGAELDEQAAAGGAD 227 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHH-hCCc----------EEeccCCcchHHhccCCCC
Confidence 4457889999876 55555556664 36789999999998888855 3321 1111110011 1224689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+++. ... .......+.+.|+++|.++.-
T Consensus 228 ~vi~-~~~---------~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 228 VILV-TVV---------SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEEE-CCC---------cHHHHHHHHHhcccCCEEEEE
Confidence 8873 321 235678888999999988764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.14 E-value=5.5 Score=37.86 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=59.8
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+| ++.++..|++ .+.+|++.+.+++.++...+..... ...++ ...+..++ ..-++.|+|++-
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~--~G~~V~v~dr~~~~~~~l~~~~~~~------g~~i~-~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIAS--RGFKISVYNRTYEKTEEFVKKAKEG------NTRVK-GYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHhhhhc------CCcce-ecCCHHHHHhcCCCCCEEEEE
Confidence 68889988 4455566655 4679999999999987765532110 01121 22344444 222357888775
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+.+.. ...+.++.+...|++| .++++..+.
T Consensus 74 v~~~~------~v~~vi~~l~~~L~~g-~iIID~gn~ 103 (470)
T PTZ00142 74 IKAGE------AVDETIDNLLPLLEKG-DIIIDGGNE 103 (470)
T ss_pred eCChH------HHHHHHHHHHhhCCCC-CEEEECCCC
Confidence 44332 2467788888888875 556777655
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=88.14 E-value=3.9 Score=36.83 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=56.6
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc----ccc---cc
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA----LKA---SL 146 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~----~~~---~~ 146 (269)
.+..+||+.|+| .|..+..+++.. +. +|++++.+++-.+.+++ ++.... +.....+. ... ..
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~-~g~~~v-------i~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELARE-FGADAT-------IDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-cCCCeE-------EcCcccccHHHHHHHHHHhC
Confidence 367889999764 233344555543 66 89999999988888764 443210 11100111 011 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+|+|+-.. . ....+....+.|+++|.++.-
T Consensus 247 ~~~~d~vid~~-g---------~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 247 GRGADVVIEAS-G---------HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCcEEEECC-C---------ChHHHHHHHHHhccCCEEEEE
Confidence 45799887322 1 134677788899999999754
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.14 E-value=1 Score=40.89 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=36.6
Q ss_pred CCcEEEEcCcccHHHHHHHHH----CC----CceEEEEECChHHHHHHHHhc
Q 035593 78 PGPIGILGFGAGSAARLILDL----YP----EAVIHGWELDPSVIKVAREFF 121 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~----~p----~~~v~~vEidp~~~~~a~~~~ 121 (269)
+..+++||.|.|.+++-+++. +| ..++..||+||+..+.=++.+
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 678999999999999877764 34 579999999999988766655
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.13 E-value=6.3 Score=34.66 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=57.4
Q ss_pred CCCCCcEEEEcCcccHHHHHH---HHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLI---LDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l---~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
+.+..+||..|+ |.++..+ ++. -+.+|+++..+++..+.+++ ++... +... ......+.+|
T Consensus 153 ~~~g~~vlV~g~--g~vg~~~~q~a~~-~G~~vi~~~~~~~~~~~~~~-~g~~~--------~~~~----~~~~~~~~~d 216 (319)
T cd08242 153 ITPGDKVAVLGD--GKLGLLIAQVLAL-TGPDVVLVGRHSEKLALARR-LGVET--------VLPD----EAESEGGGFD 216 (319)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHH-cCCcE--------EeCc----cccccCCCCC
Confidence 456789999975 4455444 443 37789999999999999887 55321 0000 1112345699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+|+- ... ....++.+.++|+++|.++.
T Consensus 217 ~vid-~~g---------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 217 VVVE-ATG---------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEE-CCC---------ChHHHHHHHHHhhcCCEEEE
Confidence 9873 321 23577888889999998886
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=88.09 E-value=5.8 Score=35.95 Aligned_cols=96 Identities=14% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~--~~~ 147 (269)
+.+..+||+.|+| .|..+..+++.. +. .|++++.+++-.+.+++ ++... -+..... +..+ . ...
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~~~-~g~~~-------~v~~~~~~~~~~~~l~~~~~ 251 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKAKQ-LGATE-------CINPRDQDKPIVEVLTEMTD 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-hCCCe-------ecccccccchHHHHHHHHhC
Confidence 4567899998764 333444455544 55 58899989988888855 44321 1111111 2111 1 123
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhcc-CCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLR-KGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~-pgG~l~~~ 189 (269)
+.+|+|+ |... ....+..+.+.|+ ++|.++.-
T Consensus 252 ~~~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 252 GGVDYAF-EVIG---------SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCCcEEE-ECCC---------CHHHHHHHHHHhccCCCEEEEE
Confidence 5799988 4321 1357778888899 99988764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.4 Score=39.54 Aligned_cols=64 Identities=20% Similarity=0.065 Sum_probs=48.0
Q ss_pred EEEEcCcccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeEEEEcC
Q 035593 81 IGILGFGAGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSGILVDL 157 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~I~~d~ 157 (269)
|+++-||.|.+..-+.+ .+.+ +.++|+|+..++.-+.++. . .++.+|..++. .-...|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~--aG~~~~~a~e~~~~a~~ty~~N~~----------~-~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ--AGFKCVFASEIDKYAQKTYEANFG----------N-KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHH--cCCeEEEEEeCCHHHHHHHHHhCC----------C-CCCccChhhhhhhhCCCcCEEEecC
Confidence 57899999999988876 3454 5679999999999888863 1 44567887772 234689998653
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.94 E-value=7.5 Score=35.87 Aligned_cols=104 Identities=21% Similarity=0.171 Sum_probs=59.3
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc-c---cc
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK-A---SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~-~---~~ 146 (269)
+.+..+||+.|+| .|.++..+++......|.++|.+++-.+.|++ ++.. .+... +..+ . ..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~-~Ga~----------~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS-FGCE----------TVDLSKDATLPEQIEQILG 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH-cCCe----------EEecCCcccHHHHHHHHcC
Confidence 4567889887765 34444556665433346677999988999887 3421 12111 1111 1 22
Q ss_pred CCCeeEEEEcCCCCCCC--C---CCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSL--L---SELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~--~---~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+|+|+- +...... . ..-.....++.+.+.++++|.+++--
T Consensus 252 ~~g~Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 252 EPEVDCAVD-CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCcEEEE-CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 346898873 3322100 0 00011247888899999999998744
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=87.82 E-value=8.7 Score=36.51 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=57.7
Q ss_pred EEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcC
Q 035593 81 IGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDL 157 (269)
Q Consensus 81 VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~ 157 (269)
|-.||+| ++.+++.|++ .+.+|++.+.+++.++...+.... ...+.. ..+..++ ..-.+.|+|++.+
T Consensus 2 IG~IGLG~MG~~mA~nL~~--~G~~V~v~drt~~~~~~l~~~~~~-------g~~~~~-~~s~~e~v~~l~~~dvIil~v 71 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMAD--HGFTVSVYNRTPEKTDEFLAEHAK-------GKKIVG-AYSIEEFVQSLERPRKIMLMV 71 (467)
T ss_pred EEEEeeHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHhhccC-------CCCcee-cCCHHHHHhhcCCCCEEEEEC
Confidence 6678887 4455555555 367999999999988776653210 011211 1233333 2234578888765
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+.. ...+.+..+...|++| -++++..+.
T Consensus 72 ~~~~------~v~~Vi~~l~~~L~~g-~iIID~gns 100 (467)
T TIGR00873 72 KAGA------PVDAVINQLLPLLEKG-DIIIDGGNS 100 (467)
T ss_pred CCcH------HHHHHHHHHHhhCCCC-CEEEECCCc
Confidence 4421 1457778888888875 566777654
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.70 E-value=5.4 Score=36.15 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~--~~~ 147 (269)
+.+..+||+.|+| .|.++..+++.. +. +|++++.+++-.+.+++ ++... -+..... +..+ . ...
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~-G~~~vi~~~~~~~~~~~~~~-~Ga~~-------~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIR-GASRIIGVDLNPSKFEQAKK-FGVTE-------FVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-cCCce-------EEcccccchhHHHHHHHHhC
Confidence 4568899999864 334445566654 55 89999999999999866 44211 0111100 1111 1 123
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
+.+|+++ |... ....+..+.+.++++ |.+++.-
T Consensus 256 ~~~d~vi-d~~G---------~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 256 GGVDYSF-ECTG---------NIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHHhhcCCCEEEEEC
Confidence 3689887 4321 245777788899996 8887644
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.54 E-value=4.5 Score=36.26 Aligned_cols=97 Identities=19% Similarity=0.060 Sum_probs=58.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~ 148 (269)
+.+..+||..|+| .|..+..+++.. +. +|.+++.+++-.+.+++. +... -+.....+..+ ....+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~-ga~~-------~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEEL-GATI-------VLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-CCCE-------EECCCccCHHHHHHHHhCCC
Confidence 4567899999754 233444455543 66 899999999998888663 4211 01111112111 12234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+-. .. ....++.+.+.|+++|.++.-.
T Consensus 241 ~~d~vid~-~g---------~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDC-AG---------VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEEC-CC---------CHHHHHHHHHhccCCCEEEEEc
Confidence 59999842 21 1356788889999999887643
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.51 E-value=5.7 Score=35.21 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=54.6
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+|. ..++..+++ .+.+|++.|.+++..+.+++. + ++. ..+..+. ......|+|++.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~~-g-----------~~~-~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE--DGHEVVGYDVNQEAVDVAGKL-G-----------ITA-RHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHC-C-----------Cee-cCCHHHHHHhCCCCCEEEEE
Confidence 578888873 445556555 467899999999877665432 2 111 1222222 222236899876
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+.. ..++.+..+...|++ |.+++++.+.
T Consensus 67 vp~~~------~~~~v~~~i~~~l~~-g~ivid~st~ 96 (299)
T PRK12490 67 VPAGE------VTESVIKDLYPLLSP-GDIVVDGGNS 96 (299)
T ss_pred ecCch------HHHHHHHHHhccCCC-CCEEEECCCC
Confidence 55431 135667777777876 4566777544
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=1.3 Score=37.84 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=39.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+...|||-=||+|+.+.+..+ -+.+..++|++++..+.|.+++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~--~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQ--SGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHH
Confidence 678899999999999999887 37789999999999999988863
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.36 E-value=8.3 Score=34.07 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-----ccc
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-----ASL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-----~~~ 146 (269)
.+.+..+||++|+| .|..+..+++.. +.+ |.+++.+++..+.+++. +.. .++..+-.. ...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g~~----------~~~~~~~~~~~~~~~~~ 223 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL-GAT----------ETVDPSREDPEAQKEDN 223 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCe----------EEecCCCCCHHHHHHhc
Confidence 34567899999865 245555566643 555 89999999988888653 321 122111111 123
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+.+|+|+.... ....+..+.+.|+++|.++.-.
T Consensus 224 ~~~vd~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 224 PYGFDVVIEATG----------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCCcEEEECCC----------ChHHHHHHHHHHhcCCEEEEEe
Confidence 457999984211 2367888889999999987643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=6.4 Score=33.54 Aligned_cols=76 Identities=7% Similarity=-0.054 Sum_probs=48.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------ccC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SLK 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~ 147 (269)
..+.+|+.|++ |.++..+.+.+ .+++|.+++.+++..+...+.+... ...++.++..|..+. ..-
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA-----HGVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-----cCCceEEEEecCCCHHHHHHHHHHh
Confidence 35788888864 44554444332 3779999999987666554433211 024678888888654 223
Q ss_pred CCeeEEEEcCC
Q 035593 148 DGFSGILVDLF 158 (269)
Q Consensus 148 ~~yD~I~~d~~ 158 (269)
++.|+++..+.
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 57899987653
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.08 E-value=5.4 Score=35.65 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=57.0
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc----ccc-----ccCC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA----LKA-----SLKD 148 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~----~~~-----~~~~ 148 (269)
+|+++|+| ++.++..|.+ .+ ..|+.+=.++. ++.-++. ++ .+...+. ... ....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~-~g-~~V~~~~R~~~-~~~l~~~-GL-----------~i~~~~~~~~~~~~~~~~~~~~~ 66 (307)
T COG1893 2 KILILGAGAIGSLLGARLAK-AG-HDVTLLVRSRR-LEALKKK-GL-----------RIEDEGGNFTTPVVAATDAEALG 66 (307)
T ss_pred eEEEECCcHHHHHHHHHHHh-CC-CeEEEEecHHH-HHHHHhC-Ce-----------EEecCCCccccccccccChhhcC
Confidence 79999999 4555555555 33 56777777666 4544443 32 2211111 100 2345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+|+|++..-+. .+.+.+..+...+++.-.+++.-.+
T Consensus 67 ~~Dlviv~vKa~-------q~~~al~~l~~~~~~~t~vl~lqNG 103 (307)
T COG1893 67 PADLVIVTVKAY-------QLEEALPSLAPLLGPNTVVLFLQNG 103 (307)
T ss_pred CCCEEEEEeccc-------cHHHHHHHhhhcCCCCcEEEEEeCC
Confidence 899999865433 3689999999999999877765443
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.06 E-value=7.2 Score=35.35 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=58.0
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~--~~~ 147 (269)
+.+..+||++|+| .|..+..+++.. ++ +|++++.+++-.+.+++ ++... -+..... +..+ . ...
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~-~ga~~-------~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKE-FGATD-------FINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCCCc-------EeccccccchHHHHHHHHhC
Confidence 4568899999864 333445556654 55 79999999999998865 44211 0111100 1111 1 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
..+|+|+ |... ....+..+.+.|+++ |.++.-.
T Consensus 253 ~g~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSF-ECTG---------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHhcccCCCEEEEEc
Confidence 5689887 3322 135677788889885 8887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.7 Score=38.27 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=64.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
++.|+.+|--.=.....++... .-+|.+||||+..+..-.+....-. -.+++.+.-|.+.- ...++||+++
T Consensus 153 gK~I~vvGDDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 153 GKEIFVVGDDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCeEEEEcCchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccChHHHHhhCCeee
Confidence 6789999944332222222222 4589999999999988776543111 23588888999875 3467999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCC---cEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKG---GRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pg---G~l~~~~ 190 (269)
.|.+.. .+. ..-|+..=-+.|+.- |.+-+..
T Consensus 227 TDPpeT---i~a--lk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 227 TDPPET---IKA--LKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred cCchhh---HHH--HHHHHhccHHHhcCCCccceEeeee
Confidence 875422 110 134555556777776 5665544
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.91 E-value=3.8 Score=34.79 Aligned_cols=82 Identities=12% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC--CceEEEEECChH-HHHHHHHhcCccccc--cCCCCcEEEEEccccccccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP--EAVIHGWELDPS-VIKVAREFFALEKLE--KSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p--~~~v~~vEidp~-~~~~a~~~~~~~~~~--~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.++.||+.||..|.++.++++.+. ++.|.+.-..-+ |.+++.+ +++.... ..++..+.-+.+..+. ...++.|
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~~~~~V~~v~~evr~-~~~Gkld 83 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVSKPEEVVTVSGEVRA-NPDGKLD 83 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccCChHHHHHHHHHHhh-CCCCceE
Confidence 578999999999999999888663 778887765544 4444433 3432210 0011112211122222 2567889
Q ss_pred EEEEcCCCC
Q 035593 152 GILVDLFSK 160 (269)
Q Consensus 152 ~I~~d~~~~ 160 (269)
+.+-++-.+
T Consensus 84 ~L~NNAG~~ 92 (289)
T KOG1209|consen 84 LLYNNAGQS 92 (289)
T ss_pred EEEcCCCCC
Confidence 888765433
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=6.6 Score=33.33 Aligned_cols=75 Identities=8% Similarity=-0.094 Sum_probs=49.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..++||+.|+ +|.++..+.+++ .+.+|.+++.++.-.+...+.+... ..++.++..|..+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------GLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CceEEEEEccCCCHHHHHHHHHHH
Confidence 4678999985 556666655543 3779999999987665444433211 24578888888764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+|+..+.
T Consensus 82 ~~~~~~~d~li~~ag 96 (255)
T PRK07523 82 EAEIGPIDILVNNAG 96 (255)
T ss_pred HHhcCCCCEEEECCC
Confidence 12356899997654
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.88 E-value=13 Score=33.73 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc-c--cc
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK-A--SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~-~--~~ 146 (269)
+.+..+||+.|+|+ |..+..+++.. +. ++++++.+++-.+.+++ ++.. .++.. +..+ . ..
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~-~g~~----------~~i~~~~~~~~~~v~~~~ 251 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKE-LGAT----------HVINPKEEDLVAAIREIT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCCc----------EEecCCCcCHHHHHHHHh
Confidence 44678899997653 55555666654 55 79999999988888765 3321 11111 1111 1 12
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+|+|+- ... ....+..+.+.|+++|.++...
T Consensus 252 ~~~~d~vld-~~g---------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 252 GGGVDYALD-TTG---------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCCcEEEE-CCC---------CcHHHHHHHHHhccCCEEEEeC
Confidence 457999873 221 1356788899999999987643
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.75 E-value=0.66 Score=42.99 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
.+.++.-|.|+-||.|-.+.-+++ .+++|++-|++|++++..+.+.+++.. +..+++++..||..|
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~k--K~crV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAK--KGCRVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhh--cCcEEEecCCCHHHHHHHHHhcccccc---chhheeeecccHHHH
Confidence 466889999999999999988876 479999999999999999999877652 234599999999987
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.72 E-value=9.9 Score=31.69 Aligned_cols=72 Identities=8% Similarity=-0.028 Sum_probs=46.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.||++|+ +|.++..+.+++ .+.+|.++..++.-.+...+.+.. ..+++++.+|..+.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCCHHHHHHHHHHHH
Confidence 467888885 555555555433 367999999998766554444321 14688888887754
Q ss_pred ccCCCeeEEEEcC
Q 035593 145 SLKDGFSGILVDL 157 (269)
Q Consensus 145 ~~~~~yD~I~~d~ 157 (269)
...+..|.|+..+
T Consensus 78 ~~~~~~d~vi~~a 90 (237)
T PRK07326 78 AAFGGLDVLIANA 90 (237)
T ss_pred HHcCCCCEEEECC
Confidence 0124789998764
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.1 Score=39.61 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFF 121 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~ 121 (269)
.+..+|..||.|+..+..++.+ ...+|++||+||.-+.+-+-++
T Consensus 62 g~ghrivtigSGGcn~L~ylsr--~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSR--APARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhc--CCceeEEEeCCHHHHHHHHHHH
Confidence 3577899999998878888776 3569999999999988776543
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=7.2 Score=33.01 Aligned_cols=75 Identities=8% Similarity=-0.093 Sum_probs=48.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..++||+.| |+|.++..+.+.+ .+.+|+++..+++-++.....+... ..+++++..|..+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAHVVSLDVTDYQSIKAAVAHA 80 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHH
Confidence 357888888 4555555555443 3679999999988766555443211 24688888888653
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...++.|+|+..+.
T Consensus 81 ~~~~~~~d~li~~ag 95 (258)
T PRK06949 81 ETEAGTIDILVNNSG 95 (258)
T ss_pred HHhcCCCCEEEECCC
Confidence 11346899987654
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.43 E-value=7.1 Score=33.51 Aligned_cols=74 Identities=5% Similarity=-0.085 Sum_probs=46.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
+.+++|+.|+ +|.++..+.+++ .+.+|++++.+++-++...+.+... ..++.++..|..+.
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEECCCCCHHHHHHHHHHH
Confidence 4678888885 445555444433 4779999999887655444333211 23567888888753
Q ss_pred -ccCCCeeEEEEcC
Q 035593 145 -SLKDGFSGILVDL 157 (269)
Q Consensus 145 -~~~~~yD~I~~d~ 157 (269)
...++.|+++..+
T Consensus 81 ~~~~~~iD~vi~~a 94 (264)
T PRK07576 81 ADEFGPIDVLVSGA 94 (264)
T ss_pred HHHcCCCCEEEECC
Confidence 1134689998765
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.06 E-value=4.3 Score=36.85 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECCh
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp 111 (269)
..++||+||||+ |+ ++..|++ ..-.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 367899999983 33 3444444 2334999999885
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=85.98 E-value=24 Score=32.90 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
....++|+++|+|. |......++. -+++|+++|.||.-...|+.. +. ++. +..+. -...|+|
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp~r~~~A~~~-G~-----------~v~--~leea--l~~aDVV 254 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDPIRALEAAMD-GF-----------RVM--TMEEA--AKIGDIF 254 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCChhhHHHHHhc-CC-----------EeC--CHHHH--HhcCCEE
Confidence 45688999999985 4444444443 378999999999765444432 21 111 11111 1356888
Q ss_pred EEcCCCCCCCCCCCCcHHHHHH-HHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEK-LRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~-~~~~L~pgG~l~~~~~~ 192 (269)
+.. .. +...+.. ....+|+|++++ |+..
T Consensus 255 Ita-TG---------~~~vI~~~~~~~mK~Gaili-N~G~ 283 (406)
T TIGR00936 255 ITA-TG---------NKDVIRGEHFENMKDGAIVA-NIGH 283 (406)
T ss_pred EEC-CC---------CHHHHHHHHHhcCCCCcEEE-EECC
Confidence 752 11 2455553 677888877664 5543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=85.95 E-value=7 Score=34.67 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=56.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
+.+..+||+.|+|+ |..+..+++.....+|+++.-+++-.+.+++ ++....- +.+-. .............+|+|
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~g~~~~~---~~~~~-~~~~i~~~~~~~~~dvv 239 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER-LGADHVL---NASDD-VVEEVRELTGGRGADAV 239 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-hCCcEEE---cCCcc-HHHHHHHHhCCCCCCEE
Confidence 45678999998542 2223334444333789999999988888755 3321100 00000 00001111233469999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+-... ....++.+.++|+++|.++.-
T Consensus 240 ld~~g----------~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 240 IDFVG----------SDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred EEcCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 84211 135778888999999988754
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.95 E-value=1.3 Score=42.57 Aligned_cols=106 Identities=10% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-----cccccC-------CCCcEEEEEcccc
Q 035593 77 PPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-----EKLEKS-------YPDRLFVYVGNAL 142 (269)
Q Consensus 77 ~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-----~~~~~~-------~~~rv~~~~~D~~ 142 (269)
+-++|-.||+| ++.++..++. .+..|+.+|++++.++.++++... ...+.. .-.|++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 34689999998 4455555554 488999999999999887544320 000000 00123332 2221
Q ss_pred ccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 143 KASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 143 ~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
. -...|+||-.++.... ....+|.++.+.++++.+++.|..+.
T Consensus 83 ~---~~~aDlViEav~E~~~-----vK~~vf~~l~~~~~~~ailasntStl 125 (507)
T PRK08268 83 D---LADCDLVVEAIVERLD-----VKQALFAQLEAIVSPDCILATNTSSL 125 (507)
T ss_pred H---hCCCCEEEEcCcccHH-----HHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1 2368999875544321 13577888888888888888888654
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=85.88 E-value=4.1 Score=34.34 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECC
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELD 110 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEid 110 (269)
...+|+.+|||+ |+ ++..|.+ ..-.+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 467999999983 44 4444444 333489999998
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=85.83 E-value=3.3 Score=38.03 Aligned_cols=104 Identities=17% Similarity=0.069 Sum_probs=55.0
Q ss_pred EEEEcCc-ccHHH-HHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEE
Q 035593 81 IGILGFG-AGSAA-RLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGI 153 (269)
Q Consensus 81 VL~iG~G-~G~~~-~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I 153 (269)
|+.||+| .|..+ ..|++ .+.. +|++.+.+++-++...+.+. ..+++.+..|..+. ..-...|+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~-~~~~~~v~va~r~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~l~~~~~~~dvV 71 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLAR-RGPFEEVTVADRNPEKAERLAEKLL--------GDRVEAVQVDVNDPESLAELLRGCDVV 71 (386)
T ss_dssp EEEE--SHHHHHHHHHHHC-TTCE-EEEEEESSHHHHHHHHT--T--------TTTEEEEE--TTTHHHHHHHHTTSSEE
T ss_pred CEEEcCcHHHHHHHHHHhc-CCCCCcEEEEECCHHHHHHHHhhcc--------ccceeEEEEecCCHHHHHHHHhcCCEE
Confidence 7899984 23222 33333 3344 99999999988766655431 35799999998875 223466999
Q ss_pred EEcCCCCCCC----------CCCC---CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSL----------LSEL---EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~----------~~~l---~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+..+...... .+.+ +..+.+..+.+..+..|+.++...+.
T Consensus 72 in~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~ 124 (386)
T PF03435_consen 72 INCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGF 124 (386)
T ss_dssp EE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BT
T ss_pred EECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCccc
Confidence 9755322110 0111 11344555556666677766665544
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.76 E-value=1.6 Score=34.41 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=27.3
Q ss_pred EEcCccc--HHHHHHH--HHCCCceEEEEECChHHHHHHHHh--cCcc
Q 035593 83 ILGFGAG--SAARLIL--DLYPEAVIHGWELDPSVIKVAREF--FALE 124 (269)
Q Consensus 83 ~iG~G~G--~~~~~l~--~~~p~~~v~~vEidp~~~~~a~~~--~~~~ 124 (269)
|||+..| ....++. ...++.+|.++|.+|...+..++. ++++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 6655553 335688999999999999988888 5443
|
; PDB: 2PY6_A. |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=85.55 E-value=3 Score=40.04 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--ccc---ccC-------CCCcEEEEEccc
Q 035593 76 LPPGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKL---EKS-------YPDRLFVYVGNA 141 (269)
Q Consensus 76 ~~~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~---~~~-------~~~rv~~~~~D~ 141 (269)
.+-++|..||+|+ ..++..+++ .+..|+.+|++++.++.++++... ... +.. .-.|++.. .|.
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 79 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL 79 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH
Confidence 4567899999983 344444444 478999999999999876544310 000 000 00123322 222
Q ss_pred cccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 142 LKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 142 ~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.. -...|+||..++... -...++|..+.+.++|+-+++.|..+.
T Consensus 80 ~~---l~~aDlVIEav~E~~-----~vK~~vf~~l~~~~~~~~IlasnTStl 123 (503)
T TIGR02279 80 HA---LADAGLVIEAIVENL-----EVKKALFAQLEELCPADTIIASNTSSL 123 (503)
T ss_pred HH---hCCCCEEEEcCcCcH-----HHHHHHHHHHHhhCCCCeEEEECCCCC
Confidence 11 236899997554431 113578888888888888888787654
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=85.54 E-value=4.6 Score=36.64 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECCh
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp 111 (269)
...+||++|||+ |+ ++..|++ ..-.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence 367999999983 33 3444444 3334999999873
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=85.50 E-value=13 Score=33.07 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=61.9
Q ss_pred CCCCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c---ccCC
Q 035593 75 ILPPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~---~~~~ 148 (269)
+.+..+||..|+| .|..+..+++.. +.+|+++..+++-.+.+++ ++... -+.....|..+ . ...+
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~-~g~~~-------v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELAKE-LGADA-------FVDFKKSDDVEAVKELTGGG 233 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH-cCCcE-------EEcCCCccHHHHHHHHhcCC
Confidence 4567899999986 566666677754 6799999999988887744 44211 01111111111 1 2345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+.+.. ..+....+.++|+++|.++.-.
T Consensus 234 ~vd~vl~~~~----------~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 234 GAHAVVVTAV----------SAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCCEEEEcCC----------chHHHHHHHHHhhcCCEEEEec
Confidence 7999985332 2356778888999999998654
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=8.2 Score=32.71 Aligned_cols=75 Identities=5% Similarity=-0.114 Sum_probs=47.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..++||+.|++ |.++..+.+.+ .+.+|+.++.+++.++...+.+... ..++.++..|..+.
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA------GGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHH
Confidence 46788888864 55555554433 3789999999987655444433211 24688888887753
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|.|+..+.
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 11246799987653
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=85.26 E-value=3 Score=37.03 Aligned_cols=72 Identities=7% Similarity=-0.016 Sum_probs=43.3
Q ss_pred EEEEcCcccHHHHHHHHHC---CCceEEEEECChHHHHHHHHhcCccccccCCCCcEE----EEEcccccc------ccC
Q 035593 81 IGILGFGAGSAARLILDLY---PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLF----VYVGNALKA------SLK 147 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~---p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~----~~~~D~~~~------~~~ 147 (269)
||+-| |+|+++..|.++. ...++..+|.|+.-+-..++.+.-.. .+++++ .+.+|.++. ...
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~----~~~~v~~~~~~vigDvrd~~~l~~~~~~ 75 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF----PDPKVRFEIVPVIGDVRDKERLNRIFEE 75 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc----cccCcccccCceeecccCHHHHHHHHhh
Confidence 45555 6788888877753 23589999999998877777762110 123454 458999875 245
Q ss_pred CCeeEEEEcC
Q 035593 148 DGFSGILVDL 157 (269)
Q Consensus 148 ~~yD~I~~d~ 157 (269)
.+.|+||.-+
T Consensus 76 ~~pdiVfHaA 85 (293)
T PF02719_consen 76 YKPDIVFHAA 85 (293)
T ss_dssp -T-SEEEE--
T ss_pred cCCCEEEECh
Confidence 5899999754
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=85.21 E-value=6.9 Score=34.83 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
+.+..+||+.|+|+ |..+..+++. .+.+ ++++.-+++..+.+++ ++....- +.+-.- ............+|+
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~-~G~~~v~~~~~~~~~~~~l~~-~g~~~~~---~~~~~~-~~~~~~~~~~~~~d~ 230 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKI-LGAKRVIAVDIDDEKLAVARE-LGADDTI---NPKEED-VEKVRELTEGRGADL 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHH-cCCCEEe---cCcccc-HHHHHHHhCCCCCCE
Confidence 44678999998654 5555566664 3665 9999988888887754 3321100 000000 011111133345999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+-... ....+..+.++|+++|.++.-
T Consensus 231 vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG----------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 984211 245778889999999998764
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PF14314 Methyltrans_Mon: Virus-capping methyltransferase | Back alignment and domain information |
|---|
Probab=85.11 E-value=4.2 Score=40.14 Aligned_cols=153 Identities=11% Similarity=0.013 Sum_probs=82.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEE---EEECChHHHHHHHHhcCcccc--ccCCCCcEEEEEcc--------ccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIH---GWELDPSVIKVAREFFALEKL--EKSYPDRLFVYVGN--------ALK 143 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~---~vEidp~~~~~a~~~~~~~~~--~~~~~~rv~~~~~D--------~~~ 143 (269)
++...|..|=|+|+++..+++.+|..++. -+|++..++.-+... ++. ....+.+-+++..| ..+
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~---PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~ 398 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPS---PPSAIMALGNDKSRCVNLDTCWEHPSDLSD 398 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCC---CcHHHhccCcccceeecchhhhcCccccCC
Confidence 35788999999999999999999976554 344444332221110 000 00011233333322 211
Q ss_pred ---c--------ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHH
Q 035593 144 ---A--------SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATL 212 (269)
Q Consensus 144 ---~--------~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (269)
| ..+-++|+|++|+--.+.........-.-+.+...|.++|.+++-.+.... -..-..++
T Consensus 399 ~~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l---------~~~~~~il 469 (675)
T PF14314_consen 399 PETWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRL---------LSPDYNIL 469 (675)
T ss_pred ccHHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhh---------hcchhhHH
Confidence 1 135589999999753321110101122333444677999999997765432 01123578
Q ss_pred HHHHHHhcCceEEEEcCCC---CceEEEEecCC
Q 035593 213 KAMHKVFGKKLYVLSLGNR---KDDSLIALTGE 242 (269)
Q Consensus 213 ~~l~~~F~~~v~~~~~~~~---~n~v~~~~~~~ 242 (269)
..+.+.|. .|..+...-. .-+|.+.+.+.
T Consensus 470 ~~lg~~F~-~V~l~qT~~SSs~TSEVYlv~~~~ 501 (675)
T PF14314_consen 470 DLLGRYFK-SVELVQTQFSSSFTSEVYLVFQKL 501 (675)
T ss_pred HHHHhhcC-ceEEEECCCCCCCceEEEEEEecc
Confidence 88999996 6777754322 12455555444
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=85.08 E-value=11 Score=30.54 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=54.2
Q ss_pred CCCcEEEEcCcccHHHHHHHH-HCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILD-LYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~-~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
+..+|+.|||=+-.. .+.+ ..++.++...|+|........ . +++.-|...- ...++|
T Consensus 25 ~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~~~~--------------~-~F~fyD~~~p~~~~~~l~~~~ 87 (162)
T PF10237_consen 25 DDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQFGG--------------D-EFVFYDYNEPEELPEELKGKF 87 (162)
T ss_pred CCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHhcCC--------------c-ceEECCCCChhhhhhhcCCCc
Confidence 467899998765444 3433 346789999999986544321 1 3333343332 225799
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHH----HHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTW----EKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~----~~~~~~L~pgG~l~~~~ 190 (269)
|+|++|.+- .+++.+ +.++..+++++.+++-.
T Consensus 88 d~vv~DPPF--------l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 88 DVVVIDPPF--------LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred eEEEECCCC--------CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 999998542 245554 55556667777666543
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.02 E-value=3.5 Score=36.60 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=54.6
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-c-CCCCcEEEEEccccccccCCCeeEEEE
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-K-SYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-~-~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+|..||+| ++.++..|++ .+.+|++++.+++.++..++........ . ....+++.. .|.. ...+..|+|++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR--NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLA--EALADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHH--HHHhCCCEEEE
Confidence 68999987 4445555554 3668999999998887766542110000 0 000112211 1211 12246799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
...+. ...+.++.+...++++.+++
T Consensus 78 ~v~~~-------~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 78 AVPSQ-------ALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred eCCHH-------HHHHHHHHHHhhcCCCCEEE
Confidence 65432 24677888888888765544
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=84.69 E-value=20 Score=31.42 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=60.2
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c--ccCCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A--SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~--~~~~~ 149 (269)
+.+..+||..|+ +.|..+..+++. .+.+|+++..+++-.+.+++.++... -+.....+... . ...+.
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~-~G~~vi~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKL-LGARVVGIAGSDEKCRWLVEELGFDA-------AINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhhcCCce-------EEecCChhHHHHHHHhccCC
Confidence 445789999984 356666666665 47899999999988888877555311 01111111111 1 11357
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+++ |... ...++.+.++|+++|.++..
T Consensus 215 ~d~vi-~~~g----------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 215 IDVYF-DNVG----------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ceEEE-Ecch----------HHHHHHHHHhcCCCceEEEE
Confidence 99887 4321 24677888899999987753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.59 E-value=7.8 Score=33.58 Aligned_cols=103 Identities=20% Similarity=0.025 Sum_probs=52.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCC--CCcEEEEEcc---cccc-ccCCC-
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSY--PDRLFVYVGN---ALKA-SLKDG- 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~--~~rv~~~~~D---~~~~-~~~~~- 149 (269)
.+.+||++|.|+|..+..++. ....++..=|+-..+..+. .....+. ...+ ...+.+..-+ +-.. ...+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~-~~~~~~~-~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLK-FNRDKNN-IALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHH-Hhhhhhh-hhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 366899999999966666655 3567777777754443332 2211000 0000 1123333222 2222 22233
Q ss_pred eeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 150 FSGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 150 yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
+|+|+. |.+- .++. -.....-++..|..+|++.
T Consensus 163 ~DlilasDvvy----~~~~-~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 163 FDLILASDVVY----EEES-FEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred ccEEEEeeeee----cCCc-chhHHHHHHHHHhcCCeEE
Confidence 899984 3221 1111 2356667777788888333
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.40 E-value=13 Score=31.60 Aligned_cols=71 Identities=7% Similarity=0.042 Sum_probs=47.0
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------c---c
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------S---L 146 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~---~ 146 (269)
+++|+.|+++ .++..+.+++ .+.+|.+++.+++-++...+... ..+++++..|..+. . .
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--------AGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4688888654 4444444432 36799999999887666554432 24688999998864 0 1
Q ss_pred --CCCeeEEEEcCC
Q 035593 147 --KDGFSGILVDLF 158 (269)
Q Consensus 147 --~~~yD~I~~d~~ 158 (269)
.++.|+|+..+.
T Consensus 73 ~~~~~id~vi~~ag 86 (260)
T PRK08267 73 ATGGRLDVLFNNAG 86 (260)
T ss_pred HcCCCCCEEEECCC
Confidence 457899997653
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.40 E-value=9 Score=35.07 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHH-HHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSV-IKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~-~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+..+||..|+| -|.++..+++.. +++|++++.+++- .+.+++ ++... .+...+.... .....+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~-lGa~~---------~i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR-LGADS---------FLVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh-CCCcE---------EEcCcCHHHHHHhhCCCcE
Confidence 356788888875 344555566654 6789999987654 455543 44211 1101111112 11135898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+ |+.. ....+..+.+.|+++|.++.-
T Consensus 246 vi-d~~G---------~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 246 II-DTVS---------AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred EE-ECCC---------cHHHHHHHHHhhcCCCEEEEE
Confidence 87 3321 234677888899999998764
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=84.38 E-value=10 Score=29.33 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=19.6
Q ss_pred cEEEEcCc-ccH-HHHHHHHHCCCceEEEEECC
Q 035593 80 PIGILGFG-AGS-AARLILDLYPEAVIHGWELD 110 (269)
Q Consensus 80 ~VL~iG~G-~G~-~~~~l~~~~p~~~v~~vEid 110 (269)
+||.+||| .|+ ++..|.+ ..-.+++.+|-|
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCC
Confidence 58999997 333 3344444 233489999977
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.32 E-value=7 Score=34.87 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc---cccccCCCe
Q 035593 76 LPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA---LKASLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~---~~~~~~~~y 150 (269)
.++.+||+.|+|+ |..+..+++.. +. +|.+++-+++-.+.+++ ++... -+.....+. .+....+.+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~-~g~~~-------~~~~~~~~~~~~~~~~~~~~v 232 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKK-MGADV-------VINPREEDVVEVKSVTDGTGV 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH-hCcce-------eeCcccccHHHHHHHcCCCCC
Confidence 4677888877543 44555566654 55 78888777777777665 33211 011111111 112334578
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+-... .......+.+.|+++|.++..
T Consensus 233 d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 233 DVVLEMSG----------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CEEEECCC----------CHHHHHHHHHHhccCCEEEEE
Confidence 99984321 245677888999999998753
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=84.19 E-value=9 Score=32.08 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=51.6
Q ss_pred CCCcEEEEcCcccHHH--HHHHHHCCCceEEEEECC--hHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAA--RLILDLYPEAVIHGWELD--PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~--~~l~~~~p~~~v~~vEid--p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
..++||+||+|.=... +.|++ -+++|++|+.+ ++..+++. ..+++++.++...- .-..+|+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~~~l~~l~~------------~~~i~~~~~~~~~~-dl~~~~l 72 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELESELTLLAE------------QGGITWLARCFDAD-ILEGAFL 72 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHH------------cCCEEEEeCCCCHH-HhCCcEE
Confidence 4679999998853333 34444 46788888654 34444332 13678777764422 2246899
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+....+ .+.-..+....+..|+++ |+.+
T Consensus 73 Vi~at~d----------~~ln~~i~~~a~~~~ilv-n~~d 101 (205)
T TIGR01470 73 VIAATDD----------EELNRRVAHAARARGVPV-NVVD 101 (205)
T ss_pred EEECCCC----------HHHHHHHHHHHHHcCCEE-EECC
Confidence 8864322 233444555555567665 5544
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.19 E-value=11 Score=32.05 Aligned_cols=75 Identities=5% Similarity=-0.131 Sum_probs=49.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
+.+++|+.|+ +|.++..+.+++ .+.+|+.++.++.-.+...+.+... ..++.++.+|..+.
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL------GIDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 4578888884 566666665543 3679999999887766555443211 24678889998864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...+..|.|+..+.
T Consensus 84 ~~~~~~id~vi~~ag 98 (259)
T PRK08213 84 LERFGHVDILVNNAG 98 (259)
T ss_pred HHHhCCCCEEEECCC
Confidence 11246899997653
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.10 E-value=12 Score=33.89 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=62.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc---ccCCC
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA---SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~---~~~~~ 149 (269)
+.+..+|..+|||+ |..+..-++.....+|.+||++++-.++|+++-...- +.-... |..+. ..+..
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~--------vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF--------VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCcee--------ecchhhhhHHHHHHHhcCCC
Confidence 34578899999985 4444555554556699999999999999998632110 110001 33332 23336
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.|..| |+.. ..+.++....++.++|..++--..
T Consensus 255 ~d~~~-e~~G---------~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 255 ADYAF-ECVG---------NVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCEEE-EccC---------CHHHHHHHHHHHhcCCeEEEEecC
Confidence 67775 3222 346888888889899987775443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.01 E-value=9.2 Score=35.88 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
....++|+++|+|. |......++. -+.+|+++|++|.-...+... + +++. +..+. -+..|+|
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~-~Ga~ViV~d~dp~ra~~A~~~-G-----------~~v~--~l~ea--l~~aDVV 271 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRG-LGARVIVTEVDPICALQAAMD-G-----------FRVM--TMEEA--AELGDIF 271 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCchhhHHHHhc-C-----------CEec--CHHHH--HhCCCEE
Confidence 34688999999983 3333333333 367999999999765444332 2 1111 11111 2368988
Q ss_pred EEcCCCCCCCCCCCCcHHHHH-HHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWE-KLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~-~~~~~L~pgG~l~~~~~~~ 193 (269)
+... . +...+. ...+.+|+|+++ +|....
T Consensus 272 I~aT-G---------~~~vI~~~~~~~mK~Gail-iNvG~~ 301 (425)
T PRK05476 272 VTAT-G---------NKDVITAEHMEAMKDGAIL-ANIGHF 301 (425)
T ss_pred EECC-C---------CHHHHHHHHHhcCCCCCEE-EEcCCC
Confidence 7532 1 244555 567788887766 455443
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=11 Score=31.50 Aligned_cols=73 Identities=4% Similarity=-0.139 Sum_probs=46.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---------- 145 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 145 (269)
.+++|+.|+ +|.++..+.+++ .+.+|.+++.++.-.+...+.... ...++.++.+|..+..
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS------TGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 467888885 566655555543 367999999998655444333221 1246888999987641
Q ss_pred -cCCCeeEEEEcC
Q 035593 146 -LKDGFSGILVDL 157 (269)
Q Consensus 146 -~~~~yD~I~~d~ 157 (269)
.-++.|+|+..+
T Consensus 79 ~~~~~id~lv~~a 91 (241)
T PRK07454 79 EQFGCPDVLINNA 91 (241)
T ss_pred HHcCCCCEEEECC
Confidence 124689998765
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.51 E-value=4.7 Score=36.25 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+.|.++|-.+|+| -|.++...++.+ +.+|++++-+..--+.|-+.++.. .+-....|.-.. .-.+..|.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd--------~fv~~~~d~d~~~~~~~~~dg 249 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGAD--------VFVDSTEDPDIMKAIMKTTDG 249 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcc--------eeEEecCCHHHHHHHHHhhcC
Confidence 3478899999986 577777777754 889999999987777777776632 111111122222 22345566
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++....+ + ...-|+.+.+.||++|.+++--.
T Consensus 250 ~~~~v~~-------~-a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 250 GIDTVSN-------L-AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred cceeeee-------c-cccchHHHHHHhhcCCEEEEEeC
Confidence 6532211 1 23456778889999999887543
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=13 Score=31.37 Aligned_cols=73 Identities=15% Similarity=-0.083 Sum_probs=46.0
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
++||+.|+++ .++..+++.+ .+.+|+++..++.-.+..+...... ..++.++.+|..+. ....+.|
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~id 75 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR------GLALRVEKLDLTDAIDRAQAAEWDVD 75 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeeCCCHHHHHHHhcCCCC
Confidence 4688888754 4455444432 4789999988876554444332211 24588888888764 1234799
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+|+.++.
T Consensus 76 ~vi~~ag 82 (257)
T PRK09291 76 VLLNNAG 82 (257)
T ss_pred EEEECCC
Confidence 9998754
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.32 E-value=2.1 Score=39.32 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
.+-..+.|+|.|-|.+++++.-++ +..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 356789999999999999998754 7899999999888777753
|
|
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=83.29 E-value=24 Score=31.85 Aligned_cols=97 Identities=20% Similarity=0.344 Sum_probs=57.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc-cc---ccCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL-KA---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~-~~---~~~~ 148 (269)
+.+..+||..|+| .|..+..+++.. +.+ +++++.+++..+.+++ ++... -+.....+.. .. ....
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~-G~~~vi~~~~s~~~~~~~~~-~g~~~-------v~~~~~~~~~~~l~~~~~~~ 255 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAF-GASPIIAVDVRDEKLAKAKE-LGATH-------TVNAAKEDAVAAIREITGGR 255 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-hCCce-------EecCCcccHHHHHHHHhCCC
Confidence 3567789988654 344445555544 555 9999999988888754 44211 0111111111 11 2345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+ |... ..+..+.+.++|+++|.++...
T Consensus 256 ~~d~vl-d~vg---------~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 256 GVDVVV-EALG---------KPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCEEE-EeCC---------CHHHHHHHHHHHhcCCEEEEEc
Confidence 699998 3321 1236788889999999887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.27 E-value=18 Score=37.81 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=62.0
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCce-------------EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAV-------------IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~-------------v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
.++||+||+| +...+..|++ .++.+ |+++|++++-.+.+.+.+ ++++.+..|..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~-~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----------~~~~~v~lDv~ 637 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLAS-VKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----------ENAEAVQLDVS 637 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHh-CcCccccccccccccccEEEEECCCHHHHHHHHHhc----------CCCceEEeecC
Confidence 6799999998 3344455544 46554 999999987766544432 23455555554
Q ss_pred cc----ccCCCeeEEEEcCCCCCCC---------CCCC----CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 143 KA----SLKDGFSGILVDLFSKGSL---------LSEL----EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 143 ~~----~~~~~yD~I~~d~~~~~~~---------~~~l----~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+. ..-...|+|++.++...+. --|+ +..+-.+++.+.-+..|+.+++-.+
T Consensus 638 D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 638 DSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred CHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence 43 2114599999876543211 0121 2334455566666777888777765
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=83.25 E-value=4.2 Score=37.16 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=45.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCC---CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLYP---EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p---~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~y 150 (269)
+.+||+.| |+|.++.++.+.+- +.+|.+++.++.-.+..... +... ..++++++.+|..+. ..-..+
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~-~~~~----~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEP-DTVP----WSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcc-cccc----CCCCeEEEEcCCCChHHHHHHhhcC
Confidence 56899888 56777776666442 36899999776433221111 0001 124799999999875 222358
Q ss_pred eEEEEcCC
Q 035593 151 SGILVDLF 158 (269)
Q Consensus 151 D~I~~d~~ 158 (269)
|+||.-+.
T Consensus 88 d~ViHlAa 95 (386)
T PLN02427 88 DLTINLAA 95 (386)
T ss_pred CEEEEccc
Confidence 99987553
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=17 Score=30.94 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=46.8
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGA-GSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..+.+|+.|+++ +.+++.+++++ .+.+|..+..+....+.+++.. ..++.++..|..+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV---------DEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc---------cCceeEEeCCCCCHHHHHHHHHH
Confidence 467899999874 45665555544 4789998888755444333321 23577888888754
Q ss_pred --ccCCCeeEEEEcC
Q 035593 145 --SLKDGFSGILVDL 157 (269)
Q Consensus 145 --~~~~~yD~I~~d~ 157 (269)
..-++.|+++.++
T Consensus 77 ~~~~~g~iD~lv~nA 91 (252)
T PRK06079 77 IKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHhCCCCEEEEcc
Confidence 1235789999875
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.23 E-value=13 Score=37.00 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
...+|..||+| ++.++..+.+ .+.+|.+++.++.. +.+++ ++ +. ...|..+.. ....|+|+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~--~G~~V~~~dr~~~~-~~a~~-~G-----------v~-~~~~~~el~-~~~aDvVI 430 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVK--QGHTVLAYSRSDYS-DEAQK-LG-----------VS-YFSDADDLC-EEHPEVIL 430 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHH--CcCEEEEEECChHH-HHHHH-cC-----------Ce-EeCCHHHHH-hcCCCEEE
Confidence 36789999988 4666666655 35689999998653 33332 22 22 122322221 12479999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHh-hccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQ-CLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~-~L~pgG~l~~~~~~~ 193 (269)
+..... .+.++++.+.. .+++ |.+++++.+.
T Consensus 431 LavP~~-------~~~~vi~~l~~~~lk~-g~ivvDv~Sv 462 (667)
T PLN02712 431 LCTSIL-------STEKVLKSLPFQRLKR-STLFVDVLSV 462 (667)
T ss_pred ECCChH-------HHHHHHHHHHHhcCCC-CcEEEECCCc
Confidence 864422 25677777764 5666 5667788654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=83.19 E-value=2.5 Score=38.99 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHH
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAR 118 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~ 118 (269)
.+.|..+||.|..|+.....+|.+ ...+|++||+||.-..+.+
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~--~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLA--GPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhc--CCceEEEEeCCHHHHHHHH
Confidence 566888999999887777777665 3469999999999887765
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.12 E-value=23 Score=31.59 Aligned_cols=92 Identities=22% Similarity=0.372 Sum_probs=56.1
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cc-ccc--cc
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NA-LKA--SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~-~~~--~~ 146 (269)
+.+..+||..|+| .|..+..+++.. +. +|++++.+++-.+.+++ ++.. .++.. +. ... ..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~-~g~~----------~~~~~~~~~~~~~~~~~~ 240 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKAL-GPANIIVVDIDEAKLEAAKA-AGAD----------VVVNGSDPDAAKRIIKAA 240 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-hCCc----------EEecCCCccHHHHHHHHh
Confidence 3357789998764 344445555543 55 79999999988888855 4421 11111 11 111 11
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
.+.+|+|+ |... ....+..+.++|+++|.++.
T Consensus 241 ~~~~d~vi-d~~g---------~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 241 GGGVDAVI-DFVN---------NSATASLAFDILAKGGKLVL 272 (350)
T ss_pred CCCCcEEE-ECCC---------CHHHHHHHHHHhhcCCeEEE
Confidence 22689998 3321 13568888999999999875
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=82.90 E-value=6 Score=36.36 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECC
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELD 110 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEid 110 (269)
...+||.+|||+ |+.....+.+..-.+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 478999999983 5444333333344589999988
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=82.88 E-value=9.4 Score=29.51 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=51.7
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++||.||+|+ |. .+.+|.. ..-.+|+.+..+++-.+...+.++ ...++++.-+-.. .....+|+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt~~ra~~l~~~~~--------~~~~~~~~~~~~~-~~~~~~DivI 80 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRTPERAEALAEEFG--------GVNIEAIPLEDLE-EALQEADIVI 80 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESSHHHHHHHHHHHT--------GCSEEEEEGGGHC-HHHHTESEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHcC--------ccccceeeHHHHH-HHHhhCCeEE
Confidence 478999999873 22 2233333 333469999999876555444442 1345555433221 2345799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcE-EEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGR-IMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~-l~~~~~ 191 (269)
.....+ ....+.+.+...... . +++.+.
T Consensus 81 ~aT~~~----~~~i~~~~~~~~~~~-----~~~v~Dla 109 (135)
T PF01488_consen 81 NATPSG----MPIITEEMLKKASKK-----LRLVIDLA 109 (135)
T ss_dssp E-SSTT----STSSTHHHHTTTCHH-----CSEEEES-
T ss_pred EecCCC----CcccCHHHHHHHHhh-----hhceeccc
Confidence 754322 123345554433322 3 677774
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.64 E-value=9.9 Score=33.80 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=57.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-cccCCCeeE
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-ASLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~~~~~~yD~ 152 (269)
+.+..+||..|+| .|..+..+++. -+.+|++++.+++-.+.+++ ++... -+.....|... ......+|+
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~-~G~~vi~~~~~~~~~~~~~~-~g~~~-------~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAK-MGFRTVAISRGSDKADLARK-LGAHH-------YIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHH-cCCcE-------EecCCCccHHHHHHhcCCCCE
Confidence 4467899999854 33444455554 36789999999988888855 44211 01111111111 111235898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+ |... ....+..+.++|+++|.++.-.
T Consensus 232 vi-~~~g---------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 IL-ATAP---------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EE-ECCC---------chHHHHHHHHHcccCCEEEEEe
Confidence 87 3221 1356777888999999887643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=82.46 E-value=9.9 Score=36.41 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=70.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC----CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c--ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY----PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A--SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~----p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~--~~~~~ 149 (269)
|...|.+.-||+|.+.....+.. ....+++-|+++.+...|+.++.+... ..+......+|-.. + ....+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~---~~~t~~~~~~dtl~~~d~~~~~~ 293 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI---DYANFNIINADTLTTKEWENENG 293 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC---CccccCcccCCcCCCcccccccc
Confidence 44689999999999887654322 135799999999999999987543221 01223343444433 2 23456
Q ss_pred eeEEEEcCCCCC-C----CC--------------CCC--CcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKG-S----LL--------------SEL--EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~-~----~~--------------~~l--~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
||.|+.+.+... . .+ +++ ....|+..+..+|++||...+-.
T Consensus 294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 999987753221 0 01 011 13478889999999999766554
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=82.37 E-value=6.8 Score=35.78 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCcEEEEcCcc-cHHH-HHHHHHCCCceEEEEECCh
Q 035593 77 PPGPIGILGFGA-GSAA-RLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~-~~l~~~~p~~~v~~vEidp 111 (269)
...+||.+|||+ |+.. ..|+. ..-.+++.+|-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~-~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAG-AGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 367999999984 4433 44443 3345899999775
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=82.22 E-value=1.4 Score=33.06 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=24.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEEC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWEL 109 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEi 109 (269)
++....|||||.|.+..-|.. .+.+=.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNS--EGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHh--CCCCcccccc
Confidence 467899999999999988876 4555566665
|
; GO: 0008168 methyltransferase activity |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=15 Score=31.71 Aligned_cols=74 Identities=5% Similarity=-0.120 Sum_probs=46.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.++||+.|++ |.++..+.+.+ .+.+|++++.+++..+...+.+... ..++.++.+|..+.
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4678888865 44444444332 3779999999877655444333211 24688899998764
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
...++.|+|+..+.
T Consensus 79 ~~~g~id~vi~~Ag 92 (287)
T PRK06194 79 ERFGAVHLLFNNAG 92 (287)
T ss_pred HHcCCCCEEEECCC
Confidence 11246899998754
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.15 E-value=18 Score=30.75 Aligned_cols=105 Identities=10% Similarity=-0.066 Sum_probs=55.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECC----hHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELD----PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEid----p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
.+++|+.|++ |.++..+++++ .+.++..+..+ .+..+...+.... .+.++.++..|..+.
T Consensus 8 ~k~vlItGa~-~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~~~~~~ 80 (257)
T PRK12744 8 GKVVLIAGGA-KNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKA------AGAKAVAFQADLTTAAAVEKLF 80 (257)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHH------hCCcEEEEecCcCCHHHHHHHH
Confidence 5688888864 45565555543 36676666543 2222222222211 124688889998754
Q ss_pred ----ccCCCeeEEEEcCCCCCCCC-CCC--------------CcHHHHHHHHhhccCCcEEEEE
Q 035593 145 ----SLKDGFSGILVDLFSKGSLL-SEL--------------EDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ----~~~~~yD~I~~d~~~~~~~~-~~l--------------~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...++.|+++..+......+ ... ....+++.+...++++|.+++.
T Consensus 81 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 81 DDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 11357899997654311000 011 1113446666677777776654
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.14 E-value=17 Score=32.22 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=54.9
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+|. ..++..|++ .+.+|++.|.+++.++.+.+. + +++ ..+..+. ..-...|+|++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~~-g-----------~~~-~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR--GGHEVVGYDRNPEAVEALAEE-G-----------ATG-ADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHC-C-----------Cee-cCCHHHHHhhcCCCCEEEEE
Confidence 588899883 345566655 467899999999887765442 2 111 1222222 111235888876
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+.+.. ...+.+..+...|++| .+++++...
T Consensus 67 v~~~~------~~~~v~~~l~~~l~~g-~ivid~st~ 96 (301)
T PRK09599 67 VPAGE------ITDATIDELAPLLSPG-DIVIDGGNS 96 (301)
T ss_pred ecCCc------HHHHHHHHHHhhCCCC-CEEEeCCCC
Confidence 54321 1356677788888875 555666443
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.14 E-value=13 Score=31.13 Aligned_cols=73 Identities=16% Similarity=0.024 Sum_probs=45.8
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------ccCC
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------SLKD 148 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------~~~~ 148 (269)
++|++.|+. |.++..+.+++ .+.+|++++.+++-.+...+...... ..+++++..|..+. ....
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCChHHHHHHHHHHhh
Confidence 468888854 55555544433 36799999999875543333221111 35789999998865 1123
Q ss_pred CeeEEEEcC
Q 035593 149 GFSGILVDL 157 (269)
Q Consensus 149 ~yD~I~~d~ 157 (269)
++|.++..+
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 579999764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.90 E-value=15 Score=31.47 Aligned_cols=74 Identities=9% Similarity=-0.026 Sum_probs=47.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--------- 145 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--------- 145 (269)
+.+.+|+.|+ +|.++..+.+++ .+.+|.+++.+++-.+...+..... ..+++++..|..+..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA------GRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4577888886 455555555433 3779999999887655444333111 246888888887641
Q ss_pred --cCCCeeEEEEcC
Q 035593 146 --LKDGFSGILVDL 157 (269)
Q Consensus 146 --~~~~yD~I~~d~ 157 (269)
.-++.|+|+..+
T Consensus 82 ~~~~~~id~vi~~A 95 (263)
T PRK07814 82 VEAFGRLDIVVNNV 95 (263)
T ss_pred HHHcCCCCEEEECC
Confidence 124789999765
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=81.89 E-value=10 Score=33.62 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=51.4
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-ccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~~~~~~yD~I~ 154 (269)
.+++|+.||.|. |......++. -+++|++++.+++-.+.++.. +. +.+. .+.. ..-..+|+||
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~-~Ga~V~v~~r~~~~~~~~~~~-G~-----------~~~~~~~l~--~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA-LGANVTVGARKSAHLARITEM-GL-----------SPFHLSELA--EEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHc-CC-----------eeecHHHHH--HHhCCCCEEE
Confidence 578999999984 3333333333 367999999998876665542 21 1111 1111 2224699999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
... +..+ .-+.+.+.++++++ ++++..
T Consensus 216 ~t~------p~~~----i~~~~l~~~~~g~v-IIDla~ 242 (296)
T PRK08306 216 NTI------PALV----LTKEVLSKMPPEAL-IIDLAS 242 (296)
T ss_pred ECC------Chhh----hhHHHHHcCCCCcE-EEEEcc
Confidence 742 2222 22445567888654 556544
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.46 E-value=19 Score=30.22 Aligned_cols=74 Identities=8% Similarity=-0.026 Sum_probs=47.4
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----------
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----------- 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----------- 145 (269)
+++|+.|+ +|.++..+++++ .+.+|..++.+++..+.....+.... ...++.++..|..+..
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46787775 566666666544 25799999999877655444332110 1346888889987641
Q ss_pred cCCCeeEEEEcC
Q 035593 146 LKDGFSGILVDL 157 (269)
Q Consensus 146 ~~~~yD~I~~d~ 157 (269)
.-++.|.|+..+
T Consensus 78 ~~~~id~vi~~a 89 (248)
T PRK08251 78 ELGGLDRVIVNA 89 (248)
T ss_pred HcCCCCEEEECC
Confidence 124689998765
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.39 E-value=18 Score=30.43 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=47.2
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----------
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----------- 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----------- 145 (269)
+++|+.| |+|.++..+.+.+ .+.+|.+++.+++-.+......... ..++.++..|..+..
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------GGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4677777 4566666666543 3679999999987665554433211 246888888887641
Q ss_pred cCCCeeEEEEcCC
Q 035593 146 LKDGFSGILVDLF 158 (269)
Q Consensus 146 ~~~~yD~I~~d~~ 158 (269)
..+..|+|+..+.
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 1245899987654
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.26 E-value=13 Score=32.90 Aligned_cols=97 Identities=14% Similarity=0.000 Sum_probs=54.3
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-cCCCe
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-LKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~y 150 (269)
+.+..+||..|+| -|..+..+++..-+. .+.+++.+++-.+++++. +... -+.....+..+. . ....+
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~-Ga~~-------~i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES-GADW-------VINNAQEPLGEALEEKGIKP 229 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh-CCcE-------EecCccccHHHHHhcCCCCC
Confidence 4467899999954 222333444432244 688899999999888764 3211 011111111111 1 11234
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+ |... ....+..+.+.|+++|.++.-
T Consensus 230 d~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 230 TLII-DAAC---------HPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CEEE-ECCC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 5665 4332 135678888999999998764
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.24 E-value=16 Score=31.67 Aligned_cols=72 Identities=6% Similarity=-0.081 Sum_probs=45.1
Q ss_pred cEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------c---cCC
Q 035593 80 PIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------S---LKD 148 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~---~~~ 148 (269)
++..|+++ |.++..+++.+. +.+|+.++.+++-++...+.+... ..++.++..|..+. . ..+
T Consensus 3 k~~lItGa-~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 34444434 467777776653 679999999887655444333211 24678888888764 1 125
Q ss_pred CeeEEEEcCC
Q 035593 149 GFSGILVDLF 158 (269)
Q Consensus 149 ~yD~I~~d~~ 158 (269)
+.|+++..+-
T Consensus 76 ~id~li~nAG 85 (275)
T PRK06940 76 PVTGLVHTAG 85 (275)
T ss_pred CCCEEEECCC
Confidence 6899997653
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.21 E-value=7 Score=39.20 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++|..||+| ++.++..+.+.....+|+++|.+++-++.+++. +... . ...|.. ..-...|+|++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~~---------~-~~~~~~--~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVID---------R-GEEDLA--EAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCCC---------c-ccCCHH--HHhcCCCEEEEC
Confidence 579999988 344555555421124799999999887776653 2110 0 001111 112467999975
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.... ...+.++.+...++++ .+++++.+.
T Consensus 71 vp~~-------~~~~vl~~l~~~~~~~-~ii~d~~sv 99 (735)
T PRK14806 71 VPVL-------AMEKVLADLKPLLSEH-AIVTDVGST 99 (735)
T ss_pred CCHH-------HHHHHHHHHHHhcCCC-cEEEEcCCC
Confidence 4321 2467888888888764 566666543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.05 E-value=3.1 Score=34.07 Aligned_cols=102 Identities=12% Similarity=0.151 Sum_probs=57.8
Q ss_pred cEEEEcCccc--HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--ccc---ccC-------CCCcEEEEEccccccc
Q 035593 80 PIGILGFGAG--SAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKL---EKS-------YPDRLFVYVGNALKAS 145 (269)
Q Consensus 80 ~VL~iG~G~G--~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~---~~~-------~~~rv~~~~~D~~~~~ 145 (269)
+|.+||+|.= .++..++. .+.+|+.+|.|++.++.+++++.. ... +.. .-.++++ ..|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence 4788998743 33333333 489999999999999988876531 100 000 0123442 233222
Q ss_pred cCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 146 LKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-...|+|+=... ..+ ...++|+++.+.+.|+-+|+.|..+-
T Consensus 76 -~~~adlViEai~------E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 76 -AVDADLVIEAIP------EDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp -GCTESEEEE-S-------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred -Hhhhheehhhcc------ccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 237888884322 111 13589999999999999999998654
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.94 E-value=16 Score=36.42 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=47.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.||+.|++ |.++..+.+.+ .+.+|++++.++.-.+.+.+.++. ..++.++..|..+.
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678888864 34444444332 367999999999877666554431 13678888887653
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
...+..|+||..+.
T Consensus 494 ~~~g~iDvvI~~AG 507 (681)
T PRK08324 494 LAFGGVDIVVSNAG 507 (681)
T ss_pred HHcCCCCEEEECCC
Confidence 11346899997653
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=80.93 E-value=11 Score=32.56 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=51.2
Q ss_pred cEEEEcCc--ccHHHHHHHHHC--CCceEEEE-ECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 80 PIGILGFG--AGSAARLILDLY--PEAVIHGW-ELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~--p~~~v~~v-Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+|..||+| ++.+++.|++.. +..+|+++ +.+++..+.+.+. + +++ ..+..+. -...|+||
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-g-----------~~~-~~~~~e~--~~~aDvVi 66 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-G-----------VKT-AASNTEV--VKSSDVII 66 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-C-----------CEE-eCChHHH--HhcCCEEE
Confidence 58899988 356666666531 22378888 9998876665432 2 221 1222211 23579999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
+...+. ...+.+..+...++++.+++
T Consensus 67 l~v~~~-------~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 67 LAVKPQ-------VVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EEECcH-------HHHHHHHHHHhhcCCCCEEE
Confidence 866321 14577777777777766554
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.88 E-value=24 Score=30.25 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=45.9
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----------
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----------- 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----------- 145 (269)
++||+.|+ +|.+++.+.+++ .+.+|.++..+++.++..++.. ..++.++..|..+..
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---------GDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46888876 455555555443 3679999999987766554432 136888889987641
Q ss_pred cCCCeeEEEEcC
Q 035593 146 LKDGFSGILVDL 157 (269)
Q Consensus 146 ~~~~yD~I~~d~ 157 (269)
...+.|+|+..+
T Consensus 73 ~~~~id~vi~~a 84 (276)
T PRK06482 73 ALGRIDVVVSNA 84 (276)
T ss_pred HcCCCCEEEECC
Confidence 124679999765
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.67 E-value=24 Score=27.33 Aligned_cols=73 Identities=16% Similarity=-0.019 Sum_probs=41.0
Q ss_pred CCCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
++++|+.+|+|. ..++..+.+ ....+|++++.+++-.+...+.++.. .+.....|.. ..-+..|+|+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~-~g~~~v~v~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~Dvvi 86 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAE-LGAAKIVIVNRTLEKAKALAERFGEL--------GIAIAYLDLE--ELLAEADLII 86 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHhhc--------ccceeecchh--hccccCCEEE
Confidence 468999999862 233333333 22368999999988766554444310 0111112221 1246789999
Q ss_pred EcCCCC
Q 035593 155 VDLFSK 160 (269)
Q Consensus 155 ~d~~~~ 160 (269)
+.....
T Consensus 87 ~~~~~~ 92 (155)
T cd01065 87 NTTPVG 92 (155)
T ss_pred eCcCCC
Confidence 876544
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=18 Score=30.55 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=46.2
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------c
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----------S 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----------~ 145 (269)
+++|+.|+++| ++..+.+.+ .+.+|.+++.++...+...+.+... ..++.++..|..+. .
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 57888887655 444333322 3679999999987665555443211 24688888887653 1
Q ss_pred cCCCeeEEEEcCC
Q 035593 146 LKDGFSGILVDLF 158 (269)
Q Consensus 146 ~~~~yD~I~~d~~ 158 (269)
.-++.|.|+..+.
T Consensus 75 ~~~~id~lI~~ag 87 (252)
T PRK07677 75 KFGRIDALINNAA 87 (252)
T ss_pred HhCCccEEEECCC
Confidence 1256899997653
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=80.56 E-value=9.8 Score=30.89 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
..++|.+||+| .|......++.+ +++|.+++.++.....+... + ++ ..+..++ -.+.|+|++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~-~-----------~~--~~~l~el--l~~aDiv~~ 97 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEF-G-----------VE--YVSLDEL--LAQADIVSL 97 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHT-T-----------EE--ESSHHHH--HHH-SEEEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhcccc-c-----------ce--eeehhhh--cchhhhhhh
Confidence 47899999886 333333333333 78999999999866522221 1 11 1122222 246899998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-+.... ...++...++|+ .+|+ |.+++|+...
T Consensus 98 ~~plt~-~T~~li~~~~l~----~mk~-ga~lvN~aRG 129 (178)
T PF02826_consen 98 HLPLTP-ETRGLINAEFLA----KMKP-GAVLVNVARG 129 (178)
T ss_dssp -SSSST-TTTTSBSHHHHH----TSTT-TEEEEESSSG
T ss_pred hhcccc-ccceeeeeeeee----cccc-ceEEEeccch
Confidence 765432 223555666665 4665 5667898643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=80.52 E-value=22 Score=31.42 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=54.2
Q ss_pred CCCcEEEEcCccc---HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc----ccc
Q 035593 77 PPGPIGILGFGAG---SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK----ASL 146 (269)
Q Consensus 77 ~~~~VL~iG~G~G---~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~----~~~ 146 (269)
++.++|.+..|+| ..+..+++. .+++|++++.+++-.+.+++ ++.. .++.. +..+ ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~-~G~~vi~~~~~~~~~~~~~~-~g~~----------~~i~~~~~~~~~~v~~~~~ 209 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKA-DGIKVINIVRRKEQVDLLKK-IGAE----------YVLNSSDPDFLEDLKELIA 209 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH-cCCc----------EEEECCCccHHHHHHHHhC
Confidence 4667888733334 444555554 47799999999998888876 3421 12211 2111 123
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+|+|+ |.... .......+.|+++|.++...
T Consensus 210 ~~~~d~vi-d~~g~----------~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 210 KLNATIFF-DAVGG----------GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCCCcEEE-ECCCc----------HHHHHHHHhhCCCCEEEEEE
Confidence 34689887 43221 23355677889999987754
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=80.46 E-value=11 Score=30.63 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=20.9
Q ss_pred cEEEEcCcc-cH-HHHHHHHHCCCceEEEEECCh
Q 035593 80 PIGILGFGA-GS-AARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 80 ~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp 111 (269)
+|+.+|||+ |+ ++..|.+ ..-.+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 589999983 44 4444444 3334799999885
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.27 E-value=4.8 Score=35.49 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=45.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD 151 (269)
.++||+.|+ +|.++..+.++. .+.+|.++..++.-............ ..++++++.+|..+. ..-+..|
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~d 78 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG----AKERLHLFKANLLEEGSFDSVVDGCE 78 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC----CCCceEEEeccccCcchHHHHHcCCC
Confidence 467888885 566666666543 36688888877643322221111110 125789999998864 1224589
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
.||..+.
T Consensus 79 ~Vih~A~ 85 (322)
T PLN02662 79 GVFHTAS 85 (322)
T ss_pred EEEEeCC
Confidence 9987653
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=26 Score=29.90 Aligned_cols=73 Identities=8% Similarity=-0.036 Sum_probs=45.1
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHC--CCceEEEEECC---hHHHHHHHHhcCccccccCCCCcEEEEEcccccc------
Q 035593 77 PPGPIGILGFGA-GSAARLILDLY--PEAVIHGWELD---PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------ 144 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~--p~~~v~~vEid---p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------ 144 (269)
..+.+|+.|+++ +.++..+++.+ .+.+|..+..+ ++.++...+... ..++..+..|..+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--------GQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--------CCceEEEecCCCCHHHHHHH
Confidence 467899999873 56666655543 46788888654 233333333221 23677888888764
Q ss_pred -----ccCCCeeEEEEcC
Q 035593 145 -----SLKDGFSGILVDL 157 (269)
Q Consensus 145 -----~~~~~yD~I~~d~ 157 (269)
..-++.|+++.++
T Consensus 78 ~~~~~~~~g~ld~lv~na 95 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCI 95 (257)
T ss_pred HHHHHHhCCCccEEEECc
Confidence 1236789998765
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.22 E-value=13 Score=33.65 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc----cc
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK----AS 145 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~----~~ 145 (269)
+.+..+||+.|+| .|..+..+++.. +. +|+++..++.-.+.+++ ++.. .++.. +... ..
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~~-~g~~----------~vv~~~~~~~~~~l~~~~ 247 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELARR-FGAT----------HTVNASEDDAVEAVRDLT 247 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH-hCCe----------EEeCCCCccHHHHHHHHc
Confidence 4567899999764 345555666654 55 49999999988888754 4421 11111 1111 12
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+.+|+|+- ... ..+.+..+.+.|+++|.++.-
T Consensus 248 ~~~~vd~vld-~~~---------~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 248 DGRGADYAFE-AVG---------RAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCCCCEEEE-cCC---------ChHHHHHHHHHhhcCCeEEEE
Confidence 2456998873 221 135678888999999988754
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.21 E-value=5.1 Score=35.47 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=46.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD 151 (269)
.++||+.| |+|.++..+.+++ .+.+|.++..++...+.......... ..++++++.+|..+. ..-+..|
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~d~~~~~~~~~~~d 79 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG----AKERLKLFKADLLDEGSFELAIDGCE 79 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC----CCCceEEEeCCCCCchHHHHHHcCCC
Confidence 56888888 4666666666543 36788887777654332222211111 124789999999875 1223579
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+|+..+.
T Consensus 80 ~vih~A~ 86 (325)
T PLN02989 80 TVFHTAS 86 (325)
T ss_pred EEEEeCC
Confidence 9987653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 2e-21
Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 33/226 (14%)
Query: 7 PADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFR--SLTNT 64
A + I + Y+ I + S L+ ++G S L + +L
Sbjct: 17 QAANTPIAGTYEGEYSVIELEADSYT-----TDGWLISING--VPSSHIVLGQPQALEFE 69
Query: 65 YFDAFATLPPILPPGP-------IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVA 117
Y AT I LG GA + AR D+YP++ ELD + +++
Sbjct: 70 YMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLS 129
Query: 118 REFFALEKLEKSYPDRLFVYVGNA---LKASLKDGFSGILVDLFSKGSLLSELEDPNTWE 174
RE+F + + R+ + V +A ++ I+ D+F+ +E
Sbjct: 130 REWFDIPR-----APRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFE 184
Query: 175 KLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220
+ L GG + N G ++ L M +VF
Sbjct: 185 HCHRGLAPGGLYVANCGD---------HSDLRGAKSELAGMMEVFE 221
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 37/223 (16%), Positives = 83/223 (37%), Gaps = 43/223 (19%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
++IA ++ + + E G ++L+LD + +T D +
Sbjct: 23 RVIASGKTPFQDYFLFE------SKGFG-KVLILDK------------DVQSTERDEYIY 63
Query: 71 ----TLPPILP-PGP--IGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFA 122
P +L P P + I+G G G+ R +L +P ++D +++VA+
Sbjct: 64 HETLVHPAMLTHPEPKRVLIVGGGEGATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMP 122
Query: 123 LEKLEKSYPD-RLFVYVGNALK--ASLKDGFSGILVDL---FSKGSLLSELEDPNTWEKL 176
E + ++ D R + + +A ++ + +++DL + + L + +
Sbjct: 123 -EWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLV 181
Query: 177 RQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
+ L GG +M G + V + + + F
Sbjct: 182 KAHLNPGG-VMGMQTGMILLTHHR------VHPVVHRTVREAF 217
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 6e-06
Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 46/214 (21%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFAT 71
+ RS +N + + + G + +L+ + ++L + A
Sbjct: 19 AKLLDVRSEHNILEIFK------SKDFG-EIAMLNR--QLLFKNFLHI-----ESELLAH 64
Query: 72 LPPILPPGP--IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF---FALEKL 126
+ + I+ A + Y I + D ++ F F K
Sbjct: 65 MGGCTKKELKEVLIVDGFDLELAHQLFK-YDT-HIDFVQADEKILDSFISFFPHFHEVKN 122
Query: 127 EKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNT-WEKLRQCLRKGGR 185
K++ L + I E + L++ L++ G
Sbjct: 123 NKNFTH------AKQLLDLDIKKYDLIFCL----------QEPDIHRIDGLKRMLKEDG- 165
Query: 186 IMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
+ ++V + M+ LK M VF
Sbjct: 166 VFISVAKHPLLEHV-------SMQNALKNMGGVF 192
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 8e-06
Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 22/131 (16%)
Query: 70 ATLPPILPPGPIGIL--GFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE 127
A L L +L G G G D PE G ++ IK A
Sbjct: 76 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA--------- 126
Query: 128 KSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187
K YP F V ++ + D ++ +++ P E+L + ++ GG ++
Sbjct: 127 KRYPQVTFC-VASSHRLPFSDTSMDAIIRIYA----------PCKAEELARVVKPGGWVI 175
Query: 188 VNVGGSCVEAE 198
G E
Sbjct: 176 TATPGPRHLME 186
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 62/230 (26%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
K + ++ + ++ ++E G +L LDG + + D F
Sbjct: 21 KTLHTEQTEFQHLEMVE------TEEFG-NMLFLDG------------MVMTSEKDEFVY 61
Query: 71 ----TLPPILP-PGP--IGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFA 122
P+ P P + ++G G G R IL +P ++D VI+ +++F
Sbjct: 62 HEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLP 120
Query: 123 LEKLEKSYPD-RLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNT------- 172
+ D R+ V V + A ++ + I+VD +P
Sbjct: 121 --SIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDST----------EPVGPAVNLFT 168
Query: 173 ---WEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
+ + + L++ G I V + + ++ + + ++F
Sbjct: 169 KGFYAGIAKALKEDG-IFVAQTDNPWFTPE-------LITNVQRDVKEIF 210
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 63/231 (27%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
++I +S I + E +P G + LDG T D F
Sbjct: 36 RVIYSGQSDIQRIDIFE------NPDLG-VVFALDG------------ITMTTEKDEFMY 76
Query: 71 ----TLPPILP-PGP--IGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFA 122
P+ P P + I+G G G R +L + E+D VI+ AR++
Sbjct: 77 HEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLK-HDSVEKAILCEVDGLVIEAARKYLK 135
Query: 123 LEKLEKSYPD-RLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNT------- 172
+ + D R + + N + K+ F I++D DP
Sbjct: 136 --QTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDST----------DPTAGQGGHLF 183
Query: 173 ----WEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
++ L++ G + + + + KVF
Sbjct: 184 TEEFYQACYDALKEDG-VFSAETEDPFYDIG-------WFKLAYRRISKVF 226
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 62/230 (26%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
+++ RSRY I V G +L+LDG + T D F+
Sbjct: 41 QLLHHRRSRYQDILVFR------SKTYG-NVLVLDG------------VIQCTERDEFSY 81
Query: 71 ----TLPPIL-PPGP--IGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFA 122
P+ P P + I+G G G R ++ +P + E+D VI+V+++F
Sbjct: 82 QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVK-HPSVESVVQCEIDEDVIQVSKKF-- 138
Query: 123 LEKLEKSYPD-RLFVYVGNALK--ASLKDGFSGILVD----------LFSKGSLLSELED 169
L + Y +L ++VG+ + +D F I+ D LF +
Sbjct: 139 LPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYY------ 192
Query: 170 PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
+ ++ L++ G ++ G D +++ + +F
Sbjct: 193 ----QLMKTALKEDG-VLCCQGECQWLHLD-------LIKEMRQFCQSLF 230
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 34/195 (17%), Positives = 77/195 (39%), Gaps = 33/195 (16%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
K++ +++ ++ + E P+ ++ LDG + T +D F
Sbjct: 38 KVLYDAPTKFQHLTIFE--SDPKGPWG--TVMALDG------------CIQVTDYDEFVY 81
Query: 71 ----TLPPIL---PPGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFA 122
+ P + I+G G G R +L + ++D V++ +++ F
Sbjct: 82 HEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLR-HGTVEHCDLVDIDGEVMEQSKQHFP 140
Query: 123 LEKLEKSYPD-RLFVYVGNA---LKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178
++ +S D R V VG+ ++ + + + +++D S+L ++ + +
Sbjct: 141 --QISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLR 198
Query: 179 CLRKGGRIMVNVGGS 193
L+ G I N G S
Sbjct: 199 ILKPDG-ICCNQGES 212
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 64/231 (27%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
KI+ + +S+Y + V E G ++L+LDG + T D FA
Sbjct: 62 KILYETKSKYQNVLVFE------STTYG-KVLVLDG------------VIQLTEKDEFAY 102
Query: 71 ----TLPPIL-PPGP--IGILGFGAGSAARLILDLYPEAV--IHGWELDPSVIKVAREFF 121
T P+ P + ++G G G R + Y V I E+D +VI+V++ +F
Sbjct: 103 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCK-YKS-VENIDICEIDETVIEVSKIYF 160
Query: 122 ALEKLEKSYPD-RLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNT------ 172
+ Y D R+ V++ +A K ++ + + I+VD DP
Sbjct: 161 K--NISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS----------DPIGPAETLF 208
Query: 173 ----WEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
+EK+ L+ G V S ++ + K+F
Sbjct: 209 NQNFYEKIYNALKPNG-YCVAQCESLWIHVG-------TIKNMIGYAKKLF 251
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 64/231 (27%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
KI+ + +S+Y + V E G ++L+LDG + T D FA
Sbjct: 24 KILYETKSKYQNVLVFE------STTYG-KVLVLDG------------VIQLTEKDEFAY 64
Query: 71 ----TLPPIL-PPGP--IGILGFGAGSAARLILDLYPEAV--IHGWELDPSVIKVAREFF 121
T P+ P + ++G G G R + Y V I E+D +VI+V++ +F
Sbjct: 65 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCK-YKS-VENIDICEIDETVIEVSKIYF 122
Query: 122 ALEKLEKSYPD-RLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNT------ 172
+ Y D R+ V++ +A K ++ + + I+VD DP
Sbjct: 123 K--NISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS----------DPIGPAETLF 170
Query: 173 ----WEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
+EK+ L+ G V S ++ + K+F
Sbjct: 171 NQNFYEKIYNALKPNG-YCVAQCESLWIHVG-------TIKNMIGYAKKLF 213
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 43/221 (19%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
K++ + +S Y + V + G ++L+LDG + T D A
Sbjct: 66 KVLFQGKSDYQDVIVFQ------SATYG-KVLVLDG------------VIQLTERDECAY 106
Query: 71 ----TLPPILP-PGP--IGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFA 122
T P+ P P + ++G G G R + + I E+D V+ V+++FF
Sbjct: 107 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFP 165
Query: 123 LEKLEKSYPD-RLFVYVGNA---LKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178
+ Y D R+ + +G+ LK + + + ++VD EL + ++ + +
Sbjct: 166 --DVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVAR 223
Query: 179 CLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
LR GG ++ S D ++E + ++F
Sbjct: 224 ALRPGG-VVCTQAESLWLHMD-------IIEDIVSNCREIF 256
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 50/233 (21%), Positives = 80/233 (34%), Gaps = 64/233 (27%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
K I + S+Y I V E G RLL LDG ++ +
Sbjct: 21 KKIYEKLSKYQKIEVYE------TEGFG-RLLALDG------------TVQLVTLGERSY 61
Query: 71 ----TLPPILP-PGP--IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFF-- 121
P +L P P + ++G G G R +L + + E+D VI V+++
Sbjct: 62 HEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKI 120
Query: 122 ---ALEKLEKSYPDRLFVYVGNALKASLKD--GFSGILVDLFSKGSLLSELEDPNT---- 172
LE + ++ + +G+ + +K+ GF I+ D DP
Sbjct: 121 DNGLLEAMLNGKHEKAKLTIGDGFEF-IKNNRGFDVIIADST----------DPVGPAKV 169
Query: 173 ------WEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
+ + L G I V GS D + + K M KVF
Sbjct: 170 LFSEEFYRYVYDALNNPG-IYVTQAGSVYLFTD-------ELISAYKEMKKVF 214
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 64/231 (27%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFA- 70
K++ +S+Y + V E G +L+LDG + T D F+
Sbjct: 54 KVLFHEKSKYQDVLVFE------STTYG-NVLVLDG------------IVQATERDEFSY 94
Query: 71 ----TLPPIL-PPGP--IGILGFGAGSAARLILDLYPEAV--IHGWELDPSVIKVAREFF 121
P+ P P + I+G G G R +L + V + E+D VI VA++F
Sbjct: 95 QEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLK-HES-VEKVTMCEIDEMVIDVAKKFL 152
Query: 122 ALEKLEKSYPD-RLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNT------ 172
+ + +L ++ G+ + + K+ F I+ D DP
Sbjct: 153 P--GMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSS----------DPVGPAESLF 200
Query: 173 ----WEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVF 219
+E LR L++ G I+ + G S ++ + K+F
Sbjct: 201 GQSYYELLRDALKEDG-ILSSQGESVWLHLP-------LIAHLVAFNRKIF 243
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 100.0 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.98 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 99.96 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.96 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.96 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.95 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.95 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.95 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.95 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.94 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.94 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.94 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.93 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.93 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.93 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.92 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.73 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.63 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.61 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.61 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.61 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.6 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.6 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.6 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.59 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.59 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.58 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.58 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.58 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.57 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.57 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.57 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.56 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.56 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.56 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.56 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.56 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.55 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.55 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.55 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.55 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.55 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.55 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.55 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.54 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.54 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.54 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.52 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.52 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.52 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.51 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.51 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.51 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.51 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.51 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.51 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.51 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.51 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.5 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.5 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.5 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.5 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.5 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.5 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.49 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.49 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.49 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.49 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.49 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.49 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.49 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.49 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.49 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.49 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.48 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.48 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.48 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.48 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.48 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.48 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.48 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.47 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.47 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.47 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.47 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.47 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.47 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.47 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.47 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.46 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.46 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.46 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.46 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.46 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.45 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.45 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.45 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.45 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.45 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.44 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.44 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.44 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.44 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.44 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.44 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.43 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.43 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.43 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.43 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.43 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.43 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.43 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.42 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.42 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.42 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.42 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.42 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.42 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.42 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.42 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.42 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.42 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.42 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.42 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.41 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.41 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.4 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.4 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.4 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.4 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.4 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.4 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.4 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.4 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.4 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.4 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.39 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.39 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.39 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.39 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.39 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.39 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.39 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.39 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.39 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.39 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.38 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.38 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.38 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.38 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.38 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.37 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.37 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.37 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.37 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.37 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.37 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.36 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.36 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.36 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.36 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.35 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.35 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.35 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.35 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.35 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.35 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.35 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.35 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.34 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.34 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.34 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.34 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.33 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.33 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.32 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.32 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.32 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.32 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.32 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.31 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.31 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.31 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.3 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.3 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.3 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.29 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.29 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.29 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.29 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.29 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.28 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.28 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.28 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.27 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.27 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.27 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.26 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.26 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.26 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.25 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.25 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.25 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.24 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.24 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.24 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.24 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.24 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.23 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.23 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.22 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.22 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.22 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.21 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.2 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.2 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.2 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.19 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.19 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.19 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.18 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.17 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.16 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.16 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.16 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.16 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.16 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.15 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.15 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.15 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.15 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.13 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.13 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.11 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.1 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.1 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.1 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.09 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.09 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.09 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.08 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.07 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.07 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.07 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.06 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.06 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.05 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.04 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.04 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.04 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.03 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.01 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.98 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.97 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.97 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.95 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.95 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.92 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.92 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.92 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.92 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.91 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.89 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.86 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.81 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.8 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.8 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.79 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.78 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.76 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.71 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.7 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.69 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.69 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.67 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.67 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.64 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.62 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.6 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.58 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.53 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.52 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.51 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.45 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.37 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.36 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.35 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.33 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.2 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.19 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.17 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.14 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.03 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.87 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.85 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.81 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.72 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.68 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.42 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.2 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.15 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.95 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.88 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.85 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.82 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.77 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.69 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.68 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.67 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.64 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.61 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.56 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.44 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.41 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.36 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.32 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.31 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.31 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.22 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.22 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.16 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.15 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.12 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.08 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.08 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.05 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.02 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.97 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.96 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.96 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.94 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.91 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.87 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.85 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.84 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.82 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.76 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.68 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.67 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.65 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.6 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.55 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.53 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.49 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.48 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.47 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.47 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.46 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.45 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.36 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.35 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.33 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.27 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.23 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.2 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.16 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.12 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.11 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.06 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.02 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.0 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.99 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 94.94 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.83 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.8 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.75 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 94.71 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.69 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.64 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.56 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.56 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.51 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.38 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.36 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.3 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.21 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.18 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.12 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.12 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.11 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.06 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 93.91 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.74 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 93.5 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 93.45 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 93.41 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 93.3 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.13 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 93.09 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 93.04 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 93.02 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 92.99 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.96 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.95 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 92.91 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.87 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 92.85 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 92.83 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.82 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.73 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.72 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 92.69 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 92.66 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.6 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.54 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.45 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 92.45 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 92.39 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 92.27 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 92.22 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 92.18 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 92.15 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 92.12 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 91.81 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 91.75 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 91.75 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.67 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 91.67 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 91.62 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 91.21 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 91.11 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 90.99 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 90.92 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 90.81 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 90.7 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 90.65 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 90.55 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 90.17 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 90.06 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 90.04 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 90.02 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.93 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 89.87 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 89.84 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 89.81 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.71 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 89.7 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 89.48 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 89.4 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 89.4 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 89.4 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 89.38 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 89.22 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 89.2 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.14 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 89.07 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 89.06 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 88.95 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 88.89 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 88.88 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 88.8 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 88.78 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 88.75 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 88.71 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 88.71 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 88.68 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 88.67 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 88.62 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 88.61 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 88.44 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 88.41 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 88.28 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 88.26 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 88.23 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 88.2 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 88.18 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 88.15 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 88.14 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 88.07 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 88.01 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.91 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.88 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 87.84 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 87.69 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 87.66 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 87.55 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 87.53 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 87.4 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.37 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 87.27 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 87.05 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 87.01 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 86.92 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 86.9 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 86.8 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 86.75 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 86.68 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 86.57 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 86.41 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 86.33 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 86.25 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 86.18 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 86.02 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 85.98 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 85.9 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 85.9 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 85.71 |
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=246.25 Aligned_cols=214 Identities=14% Similarity=0.187 Sum_probs=169.5
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~iG 85 (269)
..-.++|++++|+||+|.|+++.. | +|+|++|+ .+|+.. .-++.|++.|++.|.+ .+|++||+||
T Consensus 25 ~~v~~vl~~~~S~yQ~i~v~~s~~-----~--G~~L~LDg--~~q~te----~De~~YhE~l~h~~l~~~p~pk~VLIiG 91 (294)
T 3o4f_A 25 FAVDNVLYHEKTDHQDLIIFENAA-----F--GRVMALDG--VVQTTE----RDEFIYHEMMTHVPLLAHGHAKHVLIIG 91 (294)
T ss_dssp EEESEEEEEEC---CCEEEEEETT-----T--EEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSCCCEEEEES
T ss_pred EEEeeEEEeccCCCceEEEEEcCC-----c--ceEEEECC--chhhcc----ccHHHHHHHHHHHHHhhCCCCCeEEEEC
Confidence 344589999999999999999975 3 79999999 789864 3568899998765542 3589999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSL 163 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~ 163 (269)
+|+|.++++++++.+..+|++|||||+|+++|+++|.....+..+++|++++++||+.+ ...++||+|++|++++...
T Consensus 92 gGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~ 171 (294)
T 3o4f_A 92 GGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGP 171 (294)
T ss_dssp CTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCT
T ss_pred CCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCCC
Confidence 99999999999976677999999999999999999842111234589999999999999 5677999999999998777
Q ss_pred CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceE--EEEcCCC--Cc-eEEEE
Q 035593 164 LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLY--VLSLGNR--KD-DSLIA 238 (269)
Q Consensus 164 ~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~--~~~~~~~--~n-~v~~~ 238 (269)
+..|++.+||+.++++|+|||+++++..++.. + ...+..+.++++++|+ .+. ...++.. +. ...+|
T Consensus 172 ~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~-------~-~~~~~~~~~~l~~~F~-~v~~~~~~vPty~~g~w~f~~a 242 (294)
T 3o4f_A 172 GESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL-------Q-QEEAIDSHRKLSHYFS-DVGFYQAAIPTYYGGIMTFAWA 242 (294)
T ss_dssp TCCSSCCHHHHHHHHTEEEEEEEEEEEEESSS-------C-CHHHHHHHHHHHHHCS-EEEEEEECCTTSSSSCEEEEEE
T ss_pred chhhcCHHHHHHHHHHhCCCCEEEEecCCccc-------C-hHHHHHHHHHHHhhCC-ceeeeeeeeccCCCcceeheeE
Confidence 77899999999999999999999999877653 1 3457788999999997 443 3344432 33 34667
Q ss_pred ecCCC
Q 035593 239 LTGEL 243 (269)
Q Consensus 239 ~~~~~ 243 (269)
++.+.
T Consensus 243 s~~~~ 247 (294)
T 3o4f_A 243 TDNDA 247 (294)
T ss_dssp ESCTT
T ss_pred ECCCc
Confidence 76653
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-31 Score=233.77 Aligned_cols=213 Identities=23% Similarity=0.250 Sum_probs=172.9
Q ss_pred cCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCC--cccchHHHHHhcCCCC----CC-CC--cEEEEcCccc
Q 035593 19 SRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFR--SLTNTYFDAFATLPPI----LP-PG--PIGILGFGAG 89 (269)
Q Consensus 19 s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~--~l~~~y~~~~~~~~~l----~~-~~--~VL~iG~G~G 89 (269)
..|..++++.... +.+ +|+|++|+ .+||.+.+++ .+++.|++.|++.+.+ .+ ++ +||+||||+|
T Consensus 29 ~~~~~~~~~~d~~---~~~--g~~L~lDG--~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G 101 (317)
T 3gjy_A 29 GEYSVIELEADSY---TTD--GWLISING--VPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGAC 101 (317)
T ss_dssp CSSSEEEEEECSS---STT--EEEEEETT--EEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGG
T ss_pred ceeeeEEEEecCC---CCc--eEEEEECC--EeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcC
Confidence 4566677776543 233 89999999 7999998775 4789999999765543 23 44 9999999999
Q ss_pred HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cCCCeeEEEEcCCCCCCCCCC
Q 035593 90 SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LKDGFSGILVDLFSKGSLLSE 166 (269)
Q Consensus 90 ~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~~~yD~I~~d~~~~~~~~~~ 166 (269)
.+++++++++|+.+|++|||||+|+++||++|.... ++|++++++|++++ . ..++||+|++|++.+...+.+
T Consensus 102 ~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-----~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~ 176 (317)
T 3gjy_A 102 TMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-----APRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQN 176 (317)
T ss_dssp HHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-----TTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGG
T ss_pred HHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-----CCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchh
Confidence 999999998899999999999999999999997643 68999999999998 2 357899999999887666678
Q ss_pred CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEc------CCCCceEEEEec
Q 035593 167 LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSL------GNRKDDSLIALT 240 (269)
Q Consensus 167 l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~------~~~~n~v~~~~~ 240 (269)
+++.+||+.++++|+|||++++|..+... ...+++++++|+++|+ ++..+.. ...+|.|++|++
T Consensus 177 L~t~efl~~~~r~LkpgGvlv~~~~~~~~---------~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~Vl~As~ 246 (317)
T 3gjy_A 177 FTTVEFFEHCHRGLAPGGLYVANCGDHSD---------LRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNIILMGSD 246 (317)
T ss_dssp GSBHHHHHHHHHHEEEEEEEEEEEEECTT---------CHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEEEEEEES
T ss_pred hhHHHHHHHHHHhcCCCcEEEEEecCCcc---------hHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceEEEEEEC
Confidence 88999999999999999999999975421 2457889999999997 6776643 145799999999
Q ss_pred CCCCC-----HHHHHHhc
Q 035593 241 GELPD-----LDDWKRAL 253 (269)
Q Consensus 241 ~~~~~-----~~~~~~~l 253 (269)
.+.+. .+++.+++
T Consensus 247 ~plp~~~~~~~~~l~r~~ 264 (317)
T 3gjy_A 247 TEFFSSNSTEASAITREL 264 (317)
T ss_dssp SCCCCTTSHHHHHHHHHH
T ss_pred CCCCcccccchHHHHHHH
Confidence 99876 35555544
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=223.49 Aligned_cols=188 Identities=15% Similarity=0.143 Sum_probs=149.7
Q ss_pred CccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC-CCCcEEEEcCcc
Q 035593 10 DVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL-PPGPIGILGFGA 88 (269)
Q Consensus 10 ~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~-~~~~VL~iG~G~ 88 (269)
-.++||+++|+||+|.|+|++. | +|+|++|+ .+|+... .+.|++.|++.+.+. ++++||+||+|.
T Consensus 151 v~~vl~~~~S~yQ~I~V~es~~-----~--Gr~L~LDG--~~Q~te~-----D~~Y~e~l~h~~l~~~~pkrVLIIGgGd 216 (381)
T 3c6k_A 151 IDEVVYDEDSPYQNIKILHSKQ-----F--GNILILSG--DVNLAES-----DLAYTRAIMGSGKEDYTGKDVLILGGGD 216 (381)
T ss_dssp EEEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEETT-----CHHHHHHHTTTTCCCCTTCEEEEEECTT
T ss_pred eEEEEEeCCCCCceEEEEEcCC-----c--ceEEEECC--ceeeeCC-----hHHHHHHHHHHHhhcCCCCeEEEECCCc
Confidence 3588999999999999999975 4 79999998 7998752 256999987766544 589999999999
Q ss_pred cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccC---CCCcEEEEEcccccc-c----cCCCeeEEEEcCCCC
Q 035593 89 GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKS---YPDRLFVYVGNALKA-S----LKDGFSGILVDLFSK 160 (269)
Q Consensus 89 G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~---~~~rv~~~~~D~~~~-~----~~~~yD~I~~d~~~~ 160 (269)
|..+++++++ +..+|++|||||+|+++|+++|........ .++|++++++||+.| . ..++||+|++|++++
T Consensus 217 G~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 217 GGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp CHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred HHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 9999999985 568999999999999999999853211111 246799999999998 2 456899999998875
Q ss_pred CCC------CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC
Q 035593 161 GSL------LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK 221 (269)
Q Consensus 161 ~~~------~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 221 (269)
... ...+++.+||+.++++|+|||+++++..++.. ...+..+.++++++|+.
T Consensus 296 ~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~---------~~~~~~i~~tl~~vF~~ 353 (381)
T 3c6k_A 296 PISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL---------TEALSLYEEQLGRLYCP 353 (381)
T ss_dssp CCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC---------HHHHHHHHHHHTTSSSC
T ss_pred cccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc---------hhHHHHHHHHHHHhCCc
Confidence 321 12467889999999999999999998765532 23467888999999973
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=212.38 Aligned_cols=209 Identities=16% Similarity=0.213 Sum_probs=161.3
Q ss_pred CccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEEcCc
Q 035593 10 DVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGILGFG 87 (269)
Q Consensus 10 ~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~iG~G 87 (269)
-.++|++.+|+||.|.|+++.. + +|.|++|+ .+|+... .++.|++.|.+.+.+ .++++||+||||
T Consensus 19 ~~~~l~~~~s~~~~i~v~~~~~-----~--g~~L~ldg--~~q~~~~----de~~y~e~l~~~~l~~~~~~~~VLdiG~G 85 (275)
T 1iy9_A 19 VNKTLHTEQTEFQHLEMVETEE-----F--GNMLFLDG--MVMTSEK----DEFVYHEMVAHVPLFTHPNPEHVLVVGGG 85 (275)
T ss_dssp EEEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEETT----THHHHHHHHHHHHHHHSSSCCEEEEESCT
T ss_pred eeeEEEEEECCCceEEEEEcCC-----C--CEEEEECC--EEeeccc----chhHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence 4578999999999999999864 2 68999997 6887642 357799877654321 257899999999
Q ss_pred ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCC
Q 035593 88 AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLS 165 (269)
Q Consensus 88 ~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~ 165 (269)
+|.++++++++.+..+|++||+||++++.|++++.... ....++|++++++|++++ ...++||+|++|++.+...+.
T Consensus 86 ~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~-~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~ 164 (275)
T 1iy9_A 86 DGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA-GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAV 164 (275)
T ss_dssp TCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH-TTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCC
T ss_pred hHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhc-cccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcch
Confidence 99999999986567899999999999999999983100 001257999999999987 346789999999987654555
Q ss_pred CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCC--CCc-eEEEEec
Q 035593 166 ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGN--RKD-DSLIALT 240 (269)
Q Consensus 166 ~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~--~~n-~v~~~~~ 240 (269)
++++.+|++.++++|+|||+++++..++.. + ......+.++++++|+ .+..+ .++. +++ ..++|++
T Consensus 165 ~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~~F~-~v~~~~~~vp~~~~g~w~~~~ask 235 (275)
T 1iy9_A 165 NLFTKGFYAGIAKALKEDGIFVAQTDNPWF-------T-PELITNVQRDVKEIFP-ITKLYTANIPTYPSGLWTFTIGSK 235 (275)
T ss_dssp CCSTTHHHHHHHHHEEEEEEEEEECCCTTT-------C-HHHHHHHHHHHHTTCS-EEEEEEECCTTSGGGCEEEEEEES
T ss_pred hhhHHHHHHHHHHhcCCCcEEEEEcCCccc-------c-HHHHHHHHHHHHHhCC-CeEEEEEecCcccCcceEEEEeeC
Confidence 788899999999999999999999765432 1 3467889999999997 44433 3443 233 4566775
Q ss_pred C
Q 035593 241 G 241 (269)
Q Consensus 241 ~ 241 (269)
+
T Consensus 236 ~ 236 (275)
T 1iy9_A 236 K 236 (275)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=210.26 Aligned_cols=211 Identities=15% Similarity=0.187 Sum_probs=161.7
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG 85 (269)
.+..++|++.+|+||.|.|+++.. + +++|++|+ .+|+.. ..++.|++.|.+.+. ..++++||+||
T Consensus 19 ~~~~~vl~~~~s~~q~i~v~~~~~-----~--g~~l~ldg--~~q~~~----~~e~~Y~e~l~~~~l~~~~~~~~VLdiG 85 (314)
T 1uir_A 19 RRMERVIASGKTPFQDYFLFESKG-----F--GKVLILDK--DVQSTE----RDEYIYHETLVHPAMLTHPEPKRVLIVG 85 (314)
T ss_dssp EECSEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSCCCEEEEEE
T ss_pred EecceEEEEEECCCCCEEEEEcCC-----C--cEEEEECC--EEeeee----cchhHHHHHHHHHHHhcCCCCCeEEEEc
Confidence 345689999999999999999864 2 68999998 789875 245779888764432 23578999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-cccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCC-
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-EKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKG- 161 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~- 161 (269)
||+|.+++.++++.+..+|++||+||.+++.|++++.. +. +...+++++++++|+.++ ...++||+|++|.+.+.
T Consensus 86 ~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~ 164 (314)
T 1uir_A 86 GGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVG 164 (314)
T ss_dssp CTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBS
T ss_pred CCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHhcCCCccEEEECCCCccc
Confidence 99999999999876678999999999999999998742 11 001257999999999987 45678999999987754
Q ss_pred --CCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC-ccccccccchhHHHHHHHHHHHHHhcCceEEE--EcC--CCCce
Q 035593 162 --SLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC-VEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLG--NRKDD 234 (269)
Q Consensus 162 --~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~--~~~n~ 234 (269)
..+..+++.+|++.++++|+|||+++++..++. . + ......+.++++++|+ .+..+ .++ .+.+.
T Consensus 165 ~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-------~-~~~~~~~~~~l~~~F~-~v~~~~~~vP~~~g~~~ 235 (314)
T 1uir_A 165 EDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLT-------H-HRVHPVVHRTVREAFR-YVRSYKNHIPGFFLNFG 235 (314)
T ss_dssp TTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC-----------CHHHHHHHHHHTTCS-EEEEEEEEEGGGTEEEE
T ss_pred ccCcchhccHHHHHHHHHHhcCCCcEEEEEccCcccc-------C-HHHHHHHHHHHHHHCC-ceEEEEEecCCCCCeEE
Confidence 223467789999999999999999999875542 1 1 2357888999999997 44333 233 22345
Q ss_pred EEEEecC
Q 035593 235 SLIALTG 241 (269)
Q Consensus 235 v~~~~~~ 241 (269)
+++|+++
T Consensus 236 ~~~as~~ 242 (314)
T 1uir_A 236 FLLASDA 242 (314)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 6778876
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=202.74 Aligned_cols=211 Identities=21% Similarity=0.288 Sum_probs=158.4
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG 85 (269)
.+..++|++.+|+||.|.|+++.. + +|.|++|+ .+|+.. ..+..|++.|...+. ..++++|||||
T Consensus 17 ~~~~~~l~~~~s~~~~i~v~~~~~-----~--g~~L~ldg--~~q~~~----~d~~~y~e~l~~~~l~~~~~~~~VLdiG 83 (281)
T 1mjf_A 17 FKIKKKIYEKLSKYQKIEVYETEG-----F--GRLLALDG--TVQLVT----LGERSYHEPLVHPAMLAHPKPKRVLVIG 83 (281)
T ss_dssp ECEEEEEEEEECSSCEEEEEEESS-----S--CEEEEETT--EEEEET----TTTHHHHHHHHHHHHHHSSCCCEEEEEE
T ss_pred EeeccEEEEeeCCCccEEEEECCC-----c--cEEEEECC--Eeeecc----ccchHHHHHHHHHHHhhCCCCCeEEEEc
Confidence 445689999999999999999864 2 68899997 688764 235678887764322 23578999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc-cc----ccCCCCcEEEEEcccccc-ccCCCeeEEEEcCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE-KL----EKSYPDRLFVYVGNALKA-SLKDGFSGILVDLFS 159 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~-~~----~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~ 159 (269)
||+|.+++.++++ +..+|++||+||.+++.|++++... .. ....+++++++.+|+.++ ...++||+|++|.+.
T Consensus 84 ~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD~Ii~d~~~ 162 (281)
T 1mjf_A 84 GGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTD 162 (281)
T ss_dssp CTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCC
T ss_pred CCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCeeEEEECCCC
Confidence 9999999999987 7789999999999999999998221 00 000257999999999887 226789999999887
Q ss_pred CCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCC--CCceE
Q 035593 160 KGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGN--RKDDS 235 (269)
Q Consensus 160 ~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~--~~n~v 235 (269)
+...+.++++.+|++.++++|+|||+++++..++.. . ......+.++++++|+ .+..+ .++. +.+.+
T Consensus 163 ~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~~f~-~v~~~~~~vP~~~g~~~~ 233 (281)
T 1mjf_A 163 PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYL-------F-TDELISAYKEMKKVFD-RVYYYSFPVIGYASPWAF 233 (281)
T ss_dssp CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTT-------S-HHHHHHHHHHHHHHCS-EEEEEEECCTTSSSSEEE
T ss_pred CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc-------C-HHHHHHHHHHHHHHCC-ceEEEEEecCCCCceEEE
Confidence 644445677899999999999999999999755421 1 4467889999999997 44443 2333 23456
Q ss_pred EEEecC
Q 035593 236 LIALTG 241 (269)
Q Consensus 236 ~~~~~~ 241 (269)
++|++.
T Consensus 234 ~~as~~ 239 (281)
T 1mjf_A 234 LVGVKG 239 (281)
T ss_dssp EEEEES
T ss_pred EEeeCC
Confidence 778776
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=202.92 Aligned_cols=211 Identities=20% Similarity=0.272 Sum_probs=161.4
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG 85 (269)
.+..++|++.+|+||.|.|+++.. + +|+|++|+ .+|+.. ..+..|++.|..++. ..++++||+||
T Consensus 20 ~~~~~~l~~~~s~~q~i~v~~~~~-----~--g~~l~ldg--~~q~~~----~~e~~Y~e~l~~~~l~~~~~~~~VLdiG 86 (283)
T 2i7c_A 20 LKIKKILYETKSKYQNVLVFESTT-----Y--GKVLVLDG--VIQLTE----KDEFAYHEMMTHVPMTVSKEPKNVLVVG 86 (283)
T ss_dssp EEEEEEEEEEECSSSEEEEEEESS-----S--CEEEEETT--EEEEET----TTHHHHHHHHHHHHHTTSSSCCEEEEEE
T ss_pred EecccEEEEEECCCccEEEEEcCC-----C--CEEEEECC--Eeeecc----cchhhHHHHHHHHHHhcCCCCCeEEEEe
Confidence 344688999999999999999864 2 58899998 678753 345778886654332 23578999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSL 163 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~ 163 (269)
||+|.+++.++++.+..+|++||+||.+++.|++++..... ...+++++++++|+.++ ...++||+|++|.+.+...
T Consensus 87 ~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~ 165 (283)
T 2i7c_A 87 GGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGP 165 (283)
T ss_dssp CTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTG
T ss_pred CCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcc-ccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCc
Confidence 99999999999866678999999999999999999853210 01257999999999987 3467899999998766433
Q ss_pred CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceE--EEEcCCC--Cc-eEEEE
Q 035593 164 LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLY--VLSLGNR--KD-DSLIA 238 (269)
Q Consensus 164 ~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~--~~~~~~~--~n-~v~~~ 238 (269)
...+++.+|++.++++|+|||+++++..++.. + ......+.++++++|+ .+. ...++.. ++ ..++|
T Consensus 166 ~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~~F~-~v~~~~~~vP~y~~g~~g~~~~ 236 (283)
T 2i7c_A 166 AETLFNQNFYEKIYNALKPNGYCVAQCESLWI-------H-VGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCC 236 (283)
T ss_dssp GGGGSSHHHHHHHHHHEEEEEEEEEECCCTTT-------C-HHHHHHHHHHHHTTCS-EEEEEEEECTTSGGGEEEEEEE
T ss_pred chhhhHHHHHHHHHHhcCCCcEEEEECCCccc-------C-HHHHHHHHHHHHHHCC-ceEEEEEEcCCcCCCcEEEEEE
Confidence 44677899999999999999999999765432 1 3457788999999997 443 4445543 44 35666
Q ss_pred ecC
Q 035593 239 LTG 241 (269)
Q Consensus 239 ~~~ 241 (269)
++.
T Consensus 237 s~~ 239 (283)
T 2i7c_A 237 SKT 239 (283)
T ss_dssp ESS
T ss_pred eCC
Confidence 655
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=202.58 Aligned_cols=210 Identities=20% Similarity=0.269 Sum_probs=151.9
Q ss_pred ccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEcCcc
Q 035593 11 VKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILGFGA 88 (269)
Q Consensus 11 ~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG~G~ 88 (269)
.++|++.+|+||.|.|+++.. + ++.|++|+ .+|+.. ..++.|++.+..++. ..++++||+||||+
T Consensus 53 ~~vl~~~~s~~q~i~v~~~~~-----~--g~~l~ldg--~~q~~~----~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~ 119 (314)
T 2b2c_A 53 KKVLFHEKSKYQDVLVFESTT-----Y--GNVLVLDG--IVQATE----RDEFSYQEMLAHLPMFAHPDPKRVLIIGGGD 119 (314)
T ss_dssp EEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEES----SSSSHHHHHHHHHHHHHSSSCCEEEEESCTT
T ss_pred ccEEEEEECCCCCEEEEEcCC-----C--CEEEEECC--EeecCC----cchhHHHHHHHHHHHhhCCCCCEEEEEcCCc
Confidence 578999999999999999864 2 68899998 678753 345778886654432 23578999999999
Q ss_pred cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCC
Q 035593 89 GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSE 166 (269)
Q Consensus 89 G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~ 166 (269)
|.+++.++++.+..+|++||+||.+++.|++++..... ...+++++++++|+.++ ...++||+|++|++.+......
T Consensus 120 G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~ 198 (314)
T 2b2c_A 120 GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAES 198 (314)
T ss_dssp SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG-GGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC--------
T ss_pred CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcc-ccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchh
Confidence 99999999876778999999999999999999853100 01257999999999987 4467899999998765433346
Q ss_pred CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC-ceEEEEcCCC--Cc-eEEEEecCC
Q 035593 167 LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK-KLYVLSLGNR--KD-DSLIALTGE 242 (269)
Q Consensus 167 l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~-~v~~~~~~~~--~n-~v~~~~~~~ 242 (269)
+++.+|++.++++|+|||+++++..++.. + ......+.++++++|++ .++...++.. ++ .+++|++.+
T Consensus 199 l~t~~~l~~~~~~LkpgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~~ 270 (314)
T 2b2c_A 199 LFGQSYYELLRDALKEDGILSSQGESVWL-------H-LPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNA 270 (314)
T ss_dssp -----HHHHHHHHEEEEEEEEEECCCTTT-------C-HHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred hhHHHHHHHHHhhcCCCeEEEEECCCccc-------C-HHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCCC
Confidence 67789999999999999999999755432 1 34577889999999973 2333344442 44 367777663
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=199.38 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=154.6
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG 85 (269)
....++|++.+|+||+|.|+++.. + +|.|++|+ .+|+.. ..++.|++.+...+. ..++.+|||||
T Consensus 32 ~~~~~~l~~~~s~~q~i~v~~~~~-----~--g~~l~ldg--~~~~~~----~de~~y~e~l~~~~l~~~~~~~~VLdiG 98 (296)
T 1inl_A 32 MKMNRVIYSGQSDIQRIDIFENPD-----L--GVVFALDG--ITMTTE----KDEFMYHEMLAHVPMFLHPNPKKVLIIG 98 (296)
T ss_dssp EECSEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred eecccEEEEEECCCccEEEEEcCC-----C--cEEEEECC--EEeecc----cchhHHHHHHhHHHHhcCCCCCEEEEEc
Confidence 345689999999999999999864 2 68999997 577653 234678887754322 23478999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCC-CC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSK-GS 162 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~-~~ 162 (269)
||+|.++..++++.+..+|++||+|+.+++.|++++.... ....+++++++++|+.++ ...++||+|++|++.+ ..
T Consensus 99 ~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~ 177 (296)
T 1inl_A 99 GGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAG 177 (296)
T ss_dssp CTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC------
T ss_pred CCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc-cccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccC
Confidence 9999999999986667899999999999999999873200 001257999999999886 3457899999998765 33
Q ss_pred CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCC--CC-ceEEE
Q 035593 163 LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGN--RK-DDSLI 237 (269)
Q Consensus 163 ~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~--~~-n~v~~ 237 (269)
....+.+.++++.++++|+|||+++++..++.. + ......+.++++++|+ .+..+ .++. ++ ...++
T Consensus 178 ~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~~F~-~v~~~~~~vp~~p~g~~~f~~ 248 (296)
T 1inl_A 178 QGGHLFTEEFYQACYDALKEDGVFSAETEDPFY-------D-IGWFKLAYRRISKVFP-ITRVYLGFMTTYPSGMWSYTF 248 (296)
T ss_dssp ----CCSHHHHHHHHHHEEEEEEEEEECCCTTT-------T-HHHHHHHHHHHHHHCS-EEEEEEEECTTSTTSEEEEEE
T ss_pred chhhhhHHHHHHHHHHhcCCCcEEEEEccCccc-------C-HHHHHHHHHHHHHHCC-ceEEEEeecCccCCCceEEEE
Confidence 344677899999999999999999999765432 1 3457889999999997 44443 3332 23 34566
Q ss_pred EecC
Q 035593 238 ALTG 241 (269)
Q Consensus 238 ~~~~ 241 (269)
|+++
T Consensus 249 as~~ 252 (296)
T 1inl_A 249 ASKG 252 (296)
T ss_dssp EESS
T ss_pred ecCC
Confidence 7764
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=199.53 Aligned_cols=210 Identities=18% Similarity=0.253 Sum_probs=152.0
Q ss_pred ccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEcCcc
Q 035593 11 VKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILGFGA 88 (269)
Q Consensus 11 ~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG~G~ 88 (269)
.++|++.+|+||+|.|++++. + +|.|.+|+ .+|+.. ..+..|++.+..++. ..++++|||||||+
T Consensus 40 ~~~l~~~~s~~q~i~v~~~~~-----~--g~~L~ldg--~~~~~~----~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~ 106 (304)
T 2o07_A 40 EQLLHHRRSRYQDILVFRSKT-----Y--GNVLVLDG--VIQCTE----RDEFSYQEMIANLPLCSHPNPRKVLIIGGGD 106 (304)
T ss_dssp EEEEEEEECSSSEEEEEEESS-----S--CEEEEETT--EEEEET----TTHHHHHHHHHHHHHTTSSSCCEEEEEECTT
T ss_pred ccEEEEEECCCcEEEEEEcCC-----C--ceEEEECC--EEEeec----ccchHHHHHHHHHHHhhCCCCCEEEEECCCc
Confidence 468999999999999999874 2 68899997 688763 346778877654332 23578999999999
Q ss_pred cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCC
Q 035593 89 GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSE 166 (269)
Q Consensus 89 G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~ 166 (269)
|.+++.++++.+..+|++||+|+++++.|++++.... ....+++++++++|+.++ ...++||+|++|++.+.....+
T Consensus 107 G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~-~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~ 185 (304)
T 2o07_A 107 GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-IGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAES 185 (304)
T ss_dssp SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC--------
T ss_pred hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhh-cccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchh
Confidence 9999999987667899999999999999999974310 001257999999999986 4467899999998765433345
Q ss_pred CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCc-eEEEEcCCC--Cc-eEEEEecCC
Q 035593 167 LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKK-LYVLSLGNR--KD-DSLIALTGE 242 (269)
Q Consensus 167 l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~-v~~~~~~~~--~n-~v~~~~~~~ 242 (269)
+.+.+|++.++++|+|||+++++..++.. . ......+.+.++++|+.. +++..++.. +. ..++|++.+
T Consensus 186 l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~as~~~ 257 (304)
T 2o07_A 186 LFKESYYQLMKTALKEDGVLCCQGECQWL-------H-LDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNP 257 (304)
T ss_dssp ---CHHHHHHHHHEEEEEEEEEEEECTTT-------C-HHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred hhHHHHHHHHHhccCCCeEEEEecCCccc-------c-hHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEEEeCCc
Confidence 67789999999999999999998755432 1 345678889999999732 222334443 22 346677653
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=193.67 Aligned_cols=213 Identities=15% Similarity=0.213 Sum_probs=155.1
Q ss_pred CCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEcC
Q 035593 9 DDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILGF 86 (269)
Q Consensus 9 ~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG~ 86 (269)
...++|++.+|+||.|.|+++... | .+ +|+|++|+ .+|+.. ..+..|++.+..++. ..++.+||||||
T Consensus 35 ~~~~~l~~~~s~~q~i~v~~~~p~-g-~~--g~~l~ldg--~~~~~~----~de~~y~e~l~~~~l~~~~~~~~VLdiG~ 104 (304)
T 3bwc_A 35 RVEKVLYDAPTKFQHLTIFESDPK-G-PW--GTVMALDG--CIQVTD----YDEFVYHEVLGHTSLCSHPKPERVLIIGG 104 (304)
T ss_dssp EEEEEEEEEECSSSEEEEEEECTT-S-SC--CEEEEETT--EEEEET----TTHHHHHHHHHHHHHTTSSSCCEEEEEEC
T ss_pred ecccEEEEeECCCCCEEEEEecCC-C-cc--ceEEEECC--eeeeec----ccchHHHHHHhhhhhhcCCCCCeEEEEcC
Confidence 346789999999999999998621 1 12 68899998 688764 235668887754322 245789999999
Q ss_pred cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-cccccCCCCcEEEEEcccccc-c--cCCCeeEEEEcCCCCCC
Q 035593 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-EKLEKSYPDRLFVYVGNALKA-S--LKDGFSGILVDLFSKGS 162 (269)
Q Consensus 87 G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-~~~~~~~~~rv~~~~~D~~~~-~--~~~~yD~I~~d~~~~~~ 162 (269)
|+|.+++.++++.+..+|++||+|+.+++.|++++.. .. ...+++++++.+|+.++ . ..++||+|++|.+.+..
T Consensus 105 G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~ 182 (304)
T 3bwc_A 105 GDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAG 182 (304)
T ss_dssp TTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC----
T ss_pred CCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccc
Confidence 9999999999865678999999999999999998731 10 01257999999999987 3 47799999999877644
Q ss_pred CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEE--cCC--CCce-EE
Q 035593 163 LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLS--LGN--RKDD-SL 236 (269)
Q Consensus 163 ~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~--~~~--~~n~-v~ 236 (269)
....+++.+|++.++++|+|||+++++..++.. . ......+.+.++++ |+ .+..+. ++. .+++ .+
T Consensus 183 ~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~~GF~-~v~~~~~~vP~yp~g~w~f~ 253 (304)
T 3bwc_A 183 PASKLFGEAFYKDVLRILKPDGICCNQGESIWL-------D-LELIEKMSRFIRETGFA-SVQYALMHVPTYPCGSIGTL 253 (304)
T ss_dssp -----CCHHHHHHHHHHEEEEEEEEEEECCTTT-------C-HHHHHHHHHHHHHHTCS-EEEEEECCCTTSTTSCCEEE
T ss_pred cchhhhHHHHHHHHHHhcCCCcEEEEecCCccc-------c-hHHHHHHHHHHHhCCCC-cEEEEEeecccccCcceEEE
Confidence 445677899999999999999999999765432 1 33577889999999 96 454443 332 2343 56
Q ss_pred EEecCC
Q 035593 237 IALTGE 242 (269)
Q Consensus 237 ~~~~~~ 242 (269)
+|++++
T Consensus 254 ~as~~~ 259 (304)
T 3bwc_A 254 VCSKKA 259 (304)
T ss_dssp EEESSS
T ss_pred EEeCCc
Confidence 677663
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-25 Score=195.11 Aligned_cols=212 Identities=20% Similarity=0.266 Sum_probs=158.5
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG 85 (269)
....++|++.+|+||+|.|++++. + +|.|++|+ .+|+.. ..++.|++.+...+. ..++++|||||
T Consensus 58 ~~~~~~l~~~~s~~q~i~v~~~~~-----~--g~~l~ldg--~~~~~~----~de~~y~e~l~~~~l~~~~~~~~VLdiG 124 (321)
T 2pt6_A 58 LKIKKILYETKSKYQNVLVFESTT-----Y--GKVLVLDG--VIQLTE----KDEFAYHEMMTHVPMTVSKEPKNVLVVG 124 (321)
T ss_dssp EEEEEEEEEEECSSCEEEEEEESS-----S--CEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred EecccEEEEEECCCceEEEEEcCC-----C--cEEEEECC--EeeeCc----ccchHHHHHHHHHHHhcCCCCCEEEEEc
Confidence 344678999999999999999863 2 58888988 567643 235678887654322 23578999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSL 163 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~ 163 (269)
||+|.+++.++++.+..+|++||+||++++.|++++.... ....+++++++++|+.++ ...++||+|++|.+++...
T Consensus 125 ~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~ 203 (321)
T 2pt6_A 125 GGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS-CGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGP 203 (321)
T ss_dssp CTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS-GGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSG
T ss_pred CCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc-cccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCCCc
Confidence 9999999999986667899999999999999999985310 001257899999999987 3467899999998765333
Q ss_pred CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceE--EEEcCCC--Cce-EEEE
Q 035593 164 LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLY--VLSLGNR--KDD-SLIA 238 (269)
Q Consensus 164 ~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~--~~~~~~~--~n~-v~~~ 238 (269)
...+++.++++.++++|+|||+++++..++.. + ...+..+.++++++|+ .+. ...++.. +++ .++|
T Consensus 204 ~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~~F~-~v~~~~~~vp~~~~g~w~f~~a 274 (321)
T 2pt6_A 204 AETLFNQNFYEKIYNALKPNGYCVAQCESLWI-------H-VGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCC 274 (321)
T ss_dssp GGGGSSHHHHHHHHHHEEEEEEEEEEECCTTT-------C-HHHHHHHHHHHHTTCS-EEEEEEEECTTSGGGEEEEEEE
T ss_pred chhhhHHHHHHHHHHhcCCCcEEEEEcCCccc-------C-HHHHHHHHHHHHHHCC-CeEEEEEEeccccCceEEEEEe
Confidence 34566799999999999999999998865532 1 3457889999999997 443 3344443 454 3566
Q ss_pred ecCC
Q 035593 239 LTGE 242 (269)
Q Consensus 239 ~~~~ 242 (269)
++..
T Consensus 275 s~~~ 278 (321)
T 2pt6_A 275 SKTD 278 (321)
T ss_dssp ESST
T ss_pred eCCC
Confidence 6553
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=190.25 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=150.9
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG 85 (269)
.+..++|++.+|+||+|.|++++. + +|+|++|+ . |+.. ..++.|++.|...+. ...+++||+||
T Consensus 15 ~~~~~vl~~~~s~~q~i~v~~~~~-----~--g~~l~ldg--~-q~~~----~d~~~y~e~l~~~~~~~~~~~~~VL~iG 80 (262)
T 2cmg_A 15 YTIEAKLLDVRSEHNILEIFKSKD-----F--GEIAMLNR--Q-LLFK----NFLHIESELLAHMGGCTKKELKEVLIVD 80 (262)
T ss_dssp EECSEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--E-EEEG----GGTHHHHHHHHHHHHTTSSCCCEEEEES
T ss_pred EEEeeEEEeeECCCceEEEEECCC-----c--cEEEEEcC--c-cccc----chHHHHHHHHHHHhhhcCCCCCEEEEEe
Confidence 345689999999999999999864 2 68999998 5 7764 245678887754432 22478999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLS 165 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~ 165 (269)
||+|.+++.++++ + .+|++||+||++++.|++++.... ....++|++++.+|++++. ++||+|++|+.++
T Consensus 81 ~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~-~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~dp----- 150 (262)
T 2cmg_A 81 GFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAKQLLDLDI--KKYDLIFCLQEPD----- 150 (262)
T ss_dssp SCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHH-HHHTCTTEEEESSGGGSCC--CCEEEEEESSCCC-----
T ss_pred CCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhc-cccCCCeEEEEechHHHHH--hhCCEEEECCCCh-----
Confidence 9999999999987 7 899999999999999999875310 0113579999999999876 7899999986432
Q ss_pred CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE--cC-CCCceEEEEecCC
Q 035593 166 ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS--LG-NRKDDSLIALTGE 242 (269)
Q Consensus 166 ~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~--~~-~~~n~v~~~~~~~ 242 (269)
..|++.++++|+|||+++++..++.. + ...+..+.++++++|+ .+..+. ++ .+.+.+++|++..
T Consensus 151 ----~~~~~~~~~~L~pgG~lv~~~~~~~~-------~-~~~~~~~~~~l~~~F~-~~~~~~~~vP~~g~~~~~~as~~~ 217 (262)
T 2cmg_A 151 ----IHRIDGLKRMLKEDGVFISVAKHPLL-------E-HVSMQNALKNMGGVFS-VAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_dssp ----HHHHHHHHTTEEEEEEEEEEEECTTT-------C-HHHHHHHHHHHHTTCS-EEEEECCTTCTTCCEEEEEEESSC
T ss_pred ----HHHHHHHHHhcCCCcEEEEEcCCccc-------C-HHHHHHHHHHHHHhCC-ceEEEEEccCCCcccEEEEeeCCC
Confidence 35999999999999999998765432 1 3357788999999997 454442 22 2233456787663
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=191.14 Aligned_cols=211 Identities=18% Similarity=0.278 Sum_probs=156.8
Q ss_pred CCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEcC
Q 035593 9 DDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILGF 86 (269)
Q Consensus 9 ~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG~ 86 (269)
+-.++|++.+|+||+|.|.++.. + +|.|.+|+ .+|+.. ..++.|++.+..++. ..++++||||||
T Consensus 63 ~v~~vl~~~~s~~q~I~v~~~~~-----~--g~~l~ldg--~~~~~~----~de~~y~e~L~~l~l~~~~~~~~VLdIG~ 129 (334)
T 1xj5_A 63 KVEKVLFQGKSDYQDVIVFQSAT-----Y--GKVLVLDG--VIQLTE----RDECAYQEMITHLPLCSIPNPKKVLVIGG 129 (334)
T ss_dssp EEEEEEEEEECSSCEEEEEEESS-----S--CEEEEETT--EEEEET----TTHHHHHHHHHHHHHTTSSCCCEEEEETC
T ss_pred EeeeEEEEeecCCeEEEEEEcCC-----C--CeEEEECC--EeecCc----CcchHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 34578999999999999999864 2 68899998 577642 346778887764432 345789999999
Q ss_pred cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cCCCeeEEEEcCCCCCCC
Q 035593 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LKDGFSGILVDLFSKGSL 163 (269)
Q Consensus 87 G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~~~yD~I~~d~~~~~~~ 163 (269)
|+|.+++.++++.+..+|++||+|+.+++.|++++..... ...+++++++++|+.++ . ..++||+|++|++.+...
T Consensus 130 G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~-gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~ 208 (334)
T 1xj5_A 130 GDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGP 208 (334)
T ss_dssp SSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSG
T ss_pred CccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCc
Confidence 9999999999876678999999999999999998742100 01257899999999987 2 357899999998765433
Q ss_pred CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCce--EEEEcCCCC--c-eEEEE
Q 035593 164 LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKL--YVLSLGNRK--D-DSLIA 238 (269)
Q Consensus 164 ~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v--~~~~~~~~~--n-~v~~~ 238 (269)
...+...++++.++++|+|||+++++..+... +......++++++++|+..+ ++..++... . ..++|
T Consensus 209 ~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--------~~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf~~a 280 (334)
T 1xj5_A 209 AKELFEKPFFQSVARALRPGGVVCTQAESLWL--------HMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLC 280 (334)
T ss_dssp GGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT--------CHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEE
T ss_pred chhhhHHHHHHHHHHhcCCCcEEEEecCCccc--------cHHHHHHHHHHHHHhCccccceEEEeCCcccCCceEEEEc
Confidence 34566789999999999999999998655432 13356778899999997323 223455442 2 24566
Q ss_pred ecC
Q 035593 239 LTG 241 (269)
Q Consensus 239 ~~~ 241 (269)
++.
T Consensus 281 s~~ 283 (334)
T 1xj5_A 281 STE 283 (334)
T ss_dssp ECS
T ss_pred ccC
Confidence 654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=147.33 Aligned_cols=150 Identities=12% Similarity=0.137 Sum_probs=106.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.++.+|||||||+|.++..++.+.++++|++||+||++++.|++++.... -.+++++++|+.++. .+.||+|
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g-----l~~v~~v~gDa~~l~-d~~FDvV 192 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG-----VDGVNVITGDETVID-GLEFDVL 192 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT-----CCSEEEEESCGGGGG-GCCCSEE
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC-----CCCeEEEECchhhCC-CCCcCEE
Confidence 4668999999999998776555555689999999999999999999874322 258999999999874 6789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcCCCCc
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKD 233 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~~~~n 233 (269)
+++...+ ...++++++++.|||||++++......+. .+...+.....+.|...+...+..+-.|
T Consensus 193 ~~~a~~~-------d~~~~l~el~r~LkPGG~Lvv~~~~~~r~---------~l~~~v~~~~~~gf~~~~~~~p~~~v~N 256 (298)
T 3fpf_A 193 MVAALAE-------PKRRVFRNIHRYVDTETRIIYRTYTGMRA---------ILYAPVSDDDITGFRRAGVVLPSGKVNN 256 (298)
T ss_dssp EECTTCS-------CHHHHHHHHHHHCCTTCEEEEEECCGGGG---------GSSCCCCTGGGTTEEEEEEECCCTTCCC
T ss_pred EECCCcc-------CHHHHHHHHHHHcCCCcEEEEEcCcchhh---------hccccCChhhhhhhhheeEECCCCCcCc
Confidence 9865311 24689999999999999999987544221 0011111224456752222334444589
Q ss_pred eEEEEecCCCCC
Q 035593 234 DSLIALTGELPD 245 (269)
Q Consensus 234 ~v~~~~~~~~~~ 245 (269)
.|+++.+...|.
T Consensus 257 ~vv~a~k~~~~~ 268 (298)
T 3fpf_A 257 TSVLVFKCPDKG 268 (298)
T ss_dssp EEEEEEECC---
T ss_pred EEEEEEccCCch
Confidence 999998888763
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-16 Score=134.16 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=92.0
Q ss_pred cchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 62 TNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 62 ~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
+.+|.+.++.. ...++.+|||||||+|..+.+++++. ..++++||++|.+++.|++++... ..+++++.+|+
T Consensus 46 e~~~m~~~a~~-~~~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~------~~~~~~~~~~a 117 (236)
T 3orh_A 46 ETPYMHALAAA-ASSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLW 117 (236)
T ss_dssp GHHHHHHHHHH-HTTTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCH
T ss_pred HHHHHHHHHHh-hccCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhC------CCceEEEeehH
Confidence 44566555432 12367899999999999999998854 458999999999999999987533 46799999999
Q ss_pred ccc---ccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEE
Q 035593 142 LKA---SLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 142 ~~~---~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
... ...++||.|+.|.+.......+. ....++++++++|||||+|++.
T Consensus 118 ~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 118 EDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp HHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred HhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 876 45678999999976543222232 2357899999999999999873
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=119.07 Aligned_cols=107 Identities=13% Similarity=0.079 Sum_probs=89.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.++.+|||||||+|.++..+++..|..+|+++|+++++++.|++++.... -++++++.+|+.+. ...++||+
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~D~ 111 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV-----ARNVTLVEAFAPEGLDDLPDPDR 111 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT-----CTTEEEEECCTTTTCTTSCCCSE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeCChhhhhhcCCCCCE
Confidence 4557889999999999999999998888999999999999999999874322 25799999999776 44478999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+++.... ...++++.+.+.|+|||.+++....
T Consensus 112 i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 112 VFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp EEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred EEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99875332 2578999999999999999998754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-13 Score=114.93 Aligned_cols=148 Identities=22% Similarity=0.335 Sum_probs=106.9
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
.+.|..+|||||||+|..+..+++.. |+.+|++||++|+|++.+++.+.. .+++..+.+|+... ....
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-------~~ni~~V~~d~~~p~~~~~~~~ 146 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-------RRNIFPILGDARFPEKYRHLVE 146 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-------CTTEEEEESCTTCGGGGTTTCC
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-------hcCeeEEEEeccCccccccccc
Confidence 46789999999999999999999864 788999999999999999988642 35799999999875 3457
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLS 227 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~ 227 (269)
.+|+|++|...+. ....++.++++.|||||.+++.+..... .........+.+..+.|++. |. -+-.+.
T Consensus 147 ~vDvVf~d~~~~~------~~~~~l~~~~r~LKpGG~lvI~ik~r~~---d~~~p~~~~~~~ev~~L~~~GF~-l~e~i~ 216 (233)
T 4df3_A 147 GVDGLYADVAQPE------QAAIVVRNARFFLRDGGYMLMAIKARSI---DVTTEPSEVYKREIKTLMDGGLE-IKDVVH 216 (233)
T ss_dssp CEEEEEECCCCTT------HHHHHHHHHHHHEEEEEEEEEEEECCHH---HHHTCCCHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred eEEEEEEeccCCh------hHHHHHHHHHHhccCCCEEEEEEecccC---CCCCChHHHHHHHHHHHHHCCCE-EEEEEc
Confidence 8999998765332 2467999999999999999987543321 11111234566677777765 63 344444
Q ss_pred cCC--CCceEEEE
Q 035593 228 LGN--RKDDSLIA 238 (269)
Q Consensus 228 ~~~--~~n~v~~~ 238 (269)
... ....++++
T Consensus 217 L~pf~~~H~lv~~ 229 (233)
T 4df3_A 217 LDPFDRDHAMIYA 229 (233)
T ss_dssp CTTTSTTEEEEEE
T ss_pred cCCCCCceEEEEE
Confidence 433 23444444
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=126.99 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=84.3
Q ss_pred CcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCC-CcEEEEEcccccc--cc-CCCeeEE
Q 035593 79 GPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYP-DRLFVYVGNALKA--SL-KDGFSGI 153 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~-~rv~~~~~D~~~~--~~-~~~yD~I 153 (269)
.+|||||||+|..+..+++..+ +.+|++||+|+++++.|++++...+ .. ++++++++|+.++ .. .++||+|
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG----YSPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT----CCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 3999999999999999999875 7899999999999999999885322 12 5899999999887 22 5799999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++|.... ...++++.+.+.|+|||+++++
T Consensus 134 ~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 134 FGQVSPM-------DLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp EECCCTT-------THHHHHHHHHHHEEEEEEEEET
T ss_pred EEcCcHH-------HHHHHHHHHHHHcCCCcEEEEe
Confidence 9986432 1467999999999999999985
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=128.02 Aligned_cols=109 Identities=19% Similarity=0.242 Sum_probs=84.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
+.|..+|||||||+|..+..+++++ ++++|++||+++.|++.|++++.... ...+++++++|+.++.. +.||+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~----~~~~v~~~~~D~~~~~~-~~~d~ 142 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRDIAI-ENASM 142 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCTTTCCC-CSEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc----cCceEEEeecccccccc-ccccc
Confidence 5578899999999999999999875 47899999999999999999864221 14589999999988733 46999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|++...-+ ..++ .....+++++++.|||||+|++.-
T Consensus 143 v~~~~~l~-~~~~-~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 143 VVLNFTLQ-FLEP-SERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp EEEESCGG-GSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeeeeee-ecCc-hhHhHHHHHHHHHcCCCcEEEEEe
Confidence 98753211 1111 112468999999999999998854
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=126.45 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=86.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc---CCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL---KDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~---~~~yD~I 153 (269)
++.+|||||||+|..+..+++..|+.+|+++|+++.+++.|++++.... ..++++++.+|+.+... .++||+|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~fD~V 146 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH----FENQVRIIEGNALEQFENVNDKVYDMI 146 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT----CTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECCHHHHHHhhccCCccEE
Confidence 5789999999999999999997788999999999999999999874322 13589999999988732 6789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++|.... ...++++.+.+.|+|||+++++-
T Consensus 147 ~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 147 FIDAAKA-------QSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp EEETTSS-------SHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEcCcHH-------HHHHHHHHHHHhcCCCeEEEEee
Confidence 9986432 14789999999999999998843
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=124.94 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=98.9
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc---cccccCCCCcEEEEEcccccc-c-
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL---EKLEKSYPDRLFVYVGNALKA-S- 145 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~---~~~~~~~~~rv~~~~~D~~~~-~- 145 (269)
.+....++.+|||||||+|.++..++++.|+.+|++||+++.+++.|++++.. .++ ..+++++++|+.++ .
T Consensus 30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----~~~v~~~~~D~~~~~~~ 105 (260)
T 2ozv_A 30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF----SARIEVLEADVTLRAKA 105 (260)
T ss_dssp HTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT----GGGEEEEECCTTCCHHH
T ss_pred HHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC----cceEEEEeCCHHHHhhh
Confidence 33344567899999999999999999998889999999999999999999865 432 24799999999887 2
Q ss_pred ------cCCCeeEEEEcCCCCCC-----------C---CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchh
Q 035593 146 ------LKDGFSGILVDLFSKGS-----------L---LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGK 205 (269)
Q Consensus 146 ------~~~~yD~I~~d~~~~~~-----------~---~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 205 (269)
..++||+|+++..-... . .......++++.+.+.|+|||.+++.....
T Consensus 106 ~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------ 173 (260)
T 2ozv_A 106 RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ------------ 173 (260)
T ss_dssp HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG------------
T ss_pred hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH------------
Confidence 35789999998422110 0 001224689999999999999998855221
Q ss_pred HHHHHHHHHHHHHhc
Q 035593 206 VVMEATLKAMHKVFG 220 (269)
Q Consensus 206 ~~~~~~~~~l~~~F~ 220 (269)
....++..+++.|.
T Consensus 174 -~~~~~~~~l~~~~~ 187 (260)
T 2ozv_A 174 -SVAEIIAACGSRFG 187 (260)
T ss_dssp -GHHHHHHHHTTTEE
T ss_pred -HHHHHHHHHHhcCC
Confidence 24456666766675
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-14 Score=118.67 Aligned_cols=110 Identities=11% Similarity=0.076 Sum_probs=88.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---cCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---LKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~~~~yD~I 153 (269)
+..+|||||||+|.++..+++..|+.++++||+++.+++.|++++.... -++++++.+|+.++. ..++||+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~D~i 115 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSDLTDYFEDGEIDRL 115 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHhhcCCCCCCEE
Confidence 4678999999999999999999999999999999999999999874322 257999999998762 45689999
Q ss_pred EEcCCCCCCC----CCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSL----LSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~----~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+++...+... ...+...++++.+.+.|+|||++++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 9985443211 0113457899999999999999998763
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=119.50 Aligned_cols=110 Identities=16% Similarity=0.075 Sum_probs=88.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I 153 (269)
+..+|||||||+|.++..+++.+|+.++++||+++.+++.|++++.... -++++++.+|+.++ ...+.||.|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~-----~~nv~~~~~d~~~l~~~~~~~~~d~v 112 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLTDVFEPGEVKRV 112 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHhhcCcCCcCEE
Confidence 4678999999999999999998899999999999999999998864222 24799999999876 346789999
Q ss_pred EEcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++...++.... ..+...++++.+++.|+|||.+++...
T Consensus 113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 98654432111 123457899999999999999998763
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=125.91 Aligned_cols=105 Identities=23% Similarity=0.216 Sum_probs=86.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--cc--CCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SL--KDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~--~~~y 150 (269)
.++.+|||||||+|..+..+++.+| +.+|+++|+++.+++.|++++.... ..++++++.+|+.++ .. .++|
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g----~~~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG----VDQRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHhcCCCCCe
Confidence 3678999999999999999999887 7899999999999999999874322 135899999999875 22 3489
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|++|.... ....+++.+.+.|+|||++++.-.
T Consensus 138 D~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 138 DLIFIDADKP-------NNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp SEEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEeCC
Confidence 9999986322 146899999999999999998643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=120.92 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=89.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~ 152 (269)
+..+|||||||+|.++..+++..|+.+|++||+++.+++.|+++..... -.+++++.+|+.++ ...++||.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~-----l~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG-----LSNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT-----CSSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC-----CCcEEEEECCHHHHHHHHcCCCChhe
Confidence 4678999999999999999999999999999999999999998864322 24699999999885 35779999
Q ss_pred EEEcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++...++.... ..+...++++.+++.|||||++.+...
T Consensus 109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 998654432111 123456899999999999999998774
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-15 Score=124.00 Aligned_cols=105 Identities=19% Similarity=0.136 Sum_probs=86.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----c-CC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----L-KD 148 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~-~~ 148 (269)
.++.+|||||||+|..+..+++.+| +.+|+++|+++.+++.|++++.... ...+++++.+|+.+. . . .+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~ 132 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN----LNDRVEVRTGLALDSLQQIENEKYE 132 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhcCCC
Confidence 3678999999999999999999887 7899999999999999999874322 135799999999875 1 1 26
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+||+|++|.... ....+++.+.+.|+|||++++.-.
T Consensus 133 ~fD~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 133 PFDFIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CCSEEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CcCEEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 799999986422 146899999999999999998643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-14 Score=114.50 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=107.8
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.+.......++.+|||+|||+|.++..+++. +.+++++|+++.+++.|++++..... .+.+++++.+|+.+.
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~ 114 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLYEN 114 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTTTT
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECchhcc
Confidence 3344443323457889999999999999999885 78999999999999999998743221 112599999999887
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLY 224 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~ 224 (269)
...++||+|+++..-.. ..-....+++.+.+.|+|||.+++...... ....+.+.+++.|. .+.
T Consensus 115 ~~~~~~D~v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~------------~~~~~~~~l~~~~~-~~~ 178 (194)
T 1dus_A 115 VKDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ------------GAKSLAKYMKDVFG-NVE 178 (194)
T ss_dssp CTTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTH------------HHHHHHHHHHHHHS-CCE
T ss_pred cccCCceEEEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCC------------ChHHHHHHHHHHhc-ceE
Confidence 55678999998642210 001135899999999999999999886542 24457777888885 455
Q ss_pred EEEcCCCCceEEEE
Q 035593 225 VLSLGNRKDDSLIA 238 (269)
Q Consensus 225 ~~~~~~~~n~v~~~ 238 (269)
.+.... ...++.+
T Consensus 179 ~~~~~~-~~~~~~~ 191 (194)
T 1dus_A 179 TVTIKG-GYRVLKS 191 (194)
T ss_dssp EEEEET-TEEEEEE
T ss_pred EEecCC-cEEEEEE
Confidence 554322 3344444
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=116.72 Aligned_cols=113 Identities=10% Similarity=0.118 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
.+.+..+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++.... -++++++.+|...+ ..+++||
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~~~~~l~~~~~~~fD 91 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG-----IENTELILDGHENLDHYVREPIR 91 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEEESCGGGGGGTCCSCEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCcHHHHHhhccCCcC
Confidence 3557889999999999999999985 7899999999999999999875322 25799999888775 3467899
Q ss_pred EEEEcC-CCCCCCCCC----CCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 152 GILVDL-FSKGSLLSE----LEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 152 ~I~~d~-~~~~~~~~~----l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+|+++. +-+...... -....+++.+.+.|||||.+++.++..
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp EEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 999874 211100000 112478899999999999999988754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-15 Score=125.61 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=86.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-c------C
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-L------K 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~------~ 147 (269)
++++|||||||+|..+..+++..| +.+|+++|+++.+++.|++++.... ..++++++.+|+.++ . . .
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l~~l~~~~~~~ 154 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG----VDHKIDFREGPALPVLDEMIKDEKNH 154 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCeEEEECCHHHHHHHHHhccCCC
Confidence 578999999999999999999887 7899999999999999999874322 135899999999876 2 1 5
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++||+|++|.... ....+++.+.+.|+|||++++.-
T Consensus 155 ~~fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 155 GSYDFIFVDADKD-------NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp TCBSEEEECSCST-------THHHHHHHHHHHBCTTCCEEEEC
T ss_pred CCEEEEEEcCchH-------HHHHHHHHHHHhCCCCeEEEEec
Confidence 7899999986422 24789999999999999998853
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-14 Score=119.22 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=85.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccC-----C
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLK-----D 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~-----~ 148 (269)
++.+|||||||+|..+..+++.+| +.+|+++|+++.+++.|++++.... ...+++++++|+.+. ... +
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG----LSDKIGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeCCHHHHHHHhhhccCCC
Confidence 678999999999999999999877 7899999999999999999874322 135799999999776 111 7
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+||+|++|.... ....+++.+.+.|+|||++++.-.
T Consensus 140 ~fD~v~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 140 QYDLIYIDADKA-------NTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp CEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CccEEEECCCHH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 899999876421 146899999999999999998643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=115.98 Aligned_cols=151 Identities=11% Similarity=0.049 Sum_probs=103.0
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCe
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~y 150 (269)
.+.++.+|||+||| +|.++..+++.. +.+|+++|+|+.+++.|++++.... .+++++.+|+..+ ...++|
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~f 124 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN------SNVRLVKSNGGIIKGVVEGTF 124 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT------CCCEEEECSSCSSTTTCCSCE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC------CCcEEEeCCchhhhhcccCce
Confidence 35578999999999 999999999865 7899999999999999999875432 2799999998655 335789
Q ss_pred eEEEEcCCCCCCCC---------------CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHH
Q 035593 151 SGILVDLFSKGSLL---------------SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAM 215 (269)
Q Consensus 151 D~I~~d~~~~~~~~---------------~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (269)
|+|+++..-..... ......++++.+.+.|+|||.+++.+... ......+.+.+
T Consensus 125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------~~~~~~~~~~l 193 (230)
T 3evz_A 125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-----------EKLLNVIKERG 193 (230)
T ss_dssp EEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-----------HHHHHHHHHHH
T ss_pred eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-----------HhHHHHHHHHH
Confidence 99998743211000 00002689999999999999999976432 12345566666
Q ss_pred HHHhcCceEEEEcCCCC-ceEEEEecCCC
Q 035593 216 HKVFGKKLYVLSLGNRK-DDSLIALTGEL 243 (269)
Q Consensus 216 ~~~F~~~v~~~~~~~~~-n~v~~~~~~~~ 243 (269)
++.. -.+..+....+. -..++.+.++.
T Consensus 194 ~~~g-~~~~~~~~~~g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 194 IKLG-YSVKDIKFKVGTRWRHSLIFFKGI 221 (230)
T ss_dssp HHTT-CEEEEEEECCCC-CEEEEEEECCC
T ss_pred HHcC-CceEEEEecCCCeEEEEEEEeccc
Confidence 6652 134444433222 23355555543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=118.83 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=88.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||||||+|..+..+++.+|+.+++++|+++.+++.|++++.. .++++++.+|+.+....++||+|+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~fD~v~ 114 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADYSKYDFEEKYDMVV 114 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-------CTTEEEEESCTTTCCCCSCEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc-------CCCEEEEeCchhccCCCCCceEEE
Confidence 4568899999999999999999998899999999999999999998753 238999999999884448999999
Q ss_pred EcCCCCCCCCCCCCcH---HHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDP---NTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~---e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+... ..++... ++++++++.|+|||.+++.....
T Consensus 115 ~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 115 SALS-----IHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp EESC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EeCc-----cccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 8532 2223222 59999999999999999876443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=120.89 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=89.2
Q ss_pred CCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 72 LPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
++.+.++.+|||||||+|..+..+++..+. +|+++|+++.+++.|++++.... ...+++++++|+.++ ...++|
T Consensus 41 l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~f 115 (257)
T 3f4k_A 41 INELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKAN----CADRVKGITGSMDNLPFQNEEL 115 (257)
T ss_dssp SCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTSCSSCTTCE
T ss_pred HhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChhhCCCCCCCE
Confidence 334567889999999999999999998764 99999999999999999864322 135799999999877 456899
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|++...- .++...++++.+++.|+|||.+++...
T Consensus 116 D~v~~~~~l-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 116 DLIWSEGAI-----YNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp EEEEEESCS-----CCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEEecChH-----hhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999986322 223467899999999999999998763
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=124.15 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=86.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-c-----C
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-L-----K 147 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~-----~ 147 (269)
.++++|||||||+|..+..+++..+ +.+|+++|+++++++.|++++...+ ..++++++.+|+.+. . . .
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l~~~~~~~~~ 134 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK----QEHKIKLRLGPALDTLHSLLNEGGE 134 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT----CTTTEEEEESCHHHHHHHHHHHHCS
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHhhccCC
Confidence 3678999999999999999999776 7899999999999999999874322 135899999999876 2 1 5
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++||+|++|.... ....+++.+.+.|+|||++++.-
T Consensus 135 ~~fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 135 HQFDFIFIDADKT-------NYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp SCEEEEEEESCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCEeEEEEcCChH-------HhHHHHHHHHHhcCCCeEEEEEC
Confidence 7999999986422 14689999999999999999853
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=122.83 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=89.6
Q ss_pred CCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 72 LPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
++.+.++.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++.... ..++++++.+|+.++ ...++|
T Consensus 41 l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~f 115 (267)
T 3kkz_A 41 IDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG----LQNRVTGIVGSMDDLPFRNEEL 115 (267)
T ss_dssp CCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCCCTTCE
T ss_pred cccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC----CCcCcEEEEcChhhCCCCCCCE
Confidence 333567899999999999999999986 77899999999999999999874322 135799999999887 456799
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|++... ..++...++++.+++.|+|||.+++...
T Consensus 116 D~i~~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 116 DLIWSEGA-----IYNIGFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp EEEEESSC-----GGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEEEEcCC-----ceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99997532 2233457999999999999999988754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-14 Score=113.00 Aligned_cols=106 Identities=20% Similarity=0.130 Sum_probs=85.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc-CCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL-KDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~yD~ 152 (269)
+.++.+|||||||+|.++..+++.+|+.+|+++|+++.+++.|++++.... ...++ ++.+|+.+. .. .++||+
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~-~~~~d~~~~~~~~~~~~D~ 97 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG----VSDRI-AVQQGAPRAFDDVPDNPDV 97 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT----CTTSE-EEECCTTGGGGGCCSCCSE
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC----CCCCE-EEecchHhhhhccCCCCCE
Confidence 456789999999999999999998888999999999999999999874322 12378 888998665 22 278999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+++.... ..++++.+.+.|+|||.+++.....
T Consensus 98 i~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 98 IFIGGGLT--------APGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp EEECC-TT--------CTTHHHHHHHTCCTTCEEEEEECSH
T ss_pred EEECCccc--------HHHHHHHHHHhcCCCCEEEEEeecc
Confidence 99754321 1679999999999999999987643
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-15 Score=124.26 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=86.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--cc------
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SL------ 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~------ 146 (269)
.++++|||||||+|..+.++++..| +.+|+++|+++.+++.|++++...+ ..++++++.+|+.++ ..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG----VEHKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHHSTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhccCC
Confidence 3678999999999999999999887 7899999999999999999874322 135799999999876 11
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.++||+|++|.... ...++++.+.+.|+|||++++.-
T Consensus 145 ~~~fD~I~~d~~~~-------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 145 EGSYDFGFVDADKP-------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcCEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEec
Confidence 57899999985422 14789999999999999999853
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=121.05 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=84.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|++++..... .++++++.+|+.++ ...+ ||+|
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~-fD~v 130 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL----IDRVELQVGDPLGIAAGQRD-IDIL 130 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG----GGGEEEEESCHHHHHTTCCS-EEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CceEEEEEecHHHHhccCCC-CCEE
Confidence 578999999999999999999777 78999999999999999988743221 25799999999876 3345 9999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++|.... ....+++.+.+.|+|||++++.
T Consensus 131 ~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 131 FMDCDVF-------NGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp EEETTTS-------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEcCChh-------hhHHHHHHHHHhcCCCeEEEEE
Confidence 9985321 2578999999999999999984
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=120.81 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=85.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-c---CCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS-L---KDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~-~---~~~yD 151 (269)
.++.+|||||||+|..+..++...++.+|++||+++.+++.|++++.... -++++++++|+.++. . .++||
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~fD 143 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ-----LENTTFCHDRAETFGQRKDVRESYD 143 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEeccHHHhcccccccCCcc
Confidence 35789999999999999999987788999999999999999998864322 236999999998873 2 57899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|++.... ....+++.+.+.|+|||.+++...
T Consensus 144 ~V~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 144 IVTARAVA--------RLSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp EEEEECCS--------CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred EEEEeccC--------CHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99987632 147899999999999999988643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=114.95 Aligned_cols=104 Identities=15% Similarity=0.035 Sum_probs=84.9
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.+..+|||||||+|.++..+++. +.+|+++|+++++++.|++++.... ...+++++.+|+.+. ...+.||+
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g----~~~~v~~~~~d~~~~~~~~~~~D~ 125 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYG----LSPRMRAVQGTAPAALADLPLPEA 125 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCTTGGGTTSCCCSE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC----CCCCEEEEeCchhhhcccCCCCCE
Confidence 3456789999999999999999985 7899999999999999998864222 123799999999985 44568999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+++... ... +++.+.+.|+|||.+++....
T Consensus 126 v~~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 126 VFIGGGG--------SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp EEECSCC--------CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred EEECCcc--------cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 9986411 234 999999999999999998864
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=123.62 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
...+|||||||+|..+..|+++ ..+|++||+|+.|++.|++ .++++++++|+.+. ..+++||+|++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR-----------HPRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC-----------CTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh-----------cCCceeehhhhhhhcccCCcccEEEE
Confidence 3578999999999999999884 5699999999999988754 25799999999988 66789999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
... ..++....++++++++|||||+|++..++..
T Consensus 106 ~~~-----~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 106 AQA-----MHWFDLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CSC-----CTTCCHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred eee-----hhHhhHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 422 2334467899999999999999998776553
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.1e-14 Score=116.05 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=85.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++....+.....++++++.+|+... ...++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 467899999999999999999877778999999999999999998753321000013799999999665 4567999999
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+.. ...++.. ..+++++++.|+|||++++...
T Consensus 108 ~~~-----~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 108 VIE-----VIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp EES-----CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred EHH-----HHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 742 2223332 4899999999999997776543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-15 Score=122.12 Aligned_cols=150 Identities=11% Similarity=-0.006 Sum_probs=86.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc-----CCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL-----KDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~-----~~~y 150 (269)
.++.+|||+|||+|.++..+++..++.+++++|+++.+++.|++++.... .+++++++|+.+... .++|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~f 102 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG------AVVDWAAADGIEWLIERAERGRPW 102 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------------CCHHHHHHHHHHHHHTTCCB
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC------CceEEEEcchHhhhhhhhhccCcc
Confidence 57889999999999999999999888999999999999999999876432 278999999987633 3899
Q ss_pred eEEEEcCCCCCCC-----CCCCC-----------------cHHHHHHHHhhccCCcE-EEEEecCCCccccccccchhHH
Q 035593 151 SGILVDLFSKGSL-----LSELE-----------------DPNTWEKLRQCLRKGGR-IMVNVGGSCVEAEDSRRDGKVV 207 (269)
Q Consensus 151 D~I~~d~~~~~~~-----~~~l~-----------------~~e~~~~~~~~L~pgG~-l~~~~~~~~~~~~~~~~~~~~~ 207 (269)
|+|+++..-.... ..... ...+++.+++.|+|||+ +++.+... . ...
T Consensus 103 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~---------~~~ 172 (215)
T 4dzr_A 103 HAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN-Q---------ADE 172 (215)
T ss_dssp SEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS-C---------HHH
T ss_pred cEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc-c---------HHH
Confidence 9999974321100 00000 06788999999999999 55554322 1 222
Q ss_pred HHHHHHHHHHHhcCceEEEEcCCCCceEEEEecCC
Q 035593 208 MEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTGE 242 (269)
Q Consensus 208 ~~~~~~~l~~~F~~~v~~~~~~~~~n~v~~~~~~~ 242 (269)
+...+..++.-|. .+...+.......++++....
T Consensus 173 ~~~~l~~~~~gf~-~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 173 VARLFAPWRERGF-RVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp HHHHTGGGGGGTE-ECCEEECTTSCEEEEEEEECC
T ss_pred HHHHHHHhhcCCc-eEEEEEecCCCEEEEEEEEcC
Confidence 3233332234464 444444444444556666443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-14 Score=119.35 Aligned_cols=127 Identities=18% Similarity=0.261 Sum_probs=99.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.+.++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|++++.... ...+++++.+|+.+....++||+
T Consensus 90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~D~ 165 (255)
T 3mb5_A 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG----FDDRVTIKLKDIYEGIEEENVDH 165 (255)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT----CTTTEEEECSCGGGCCCCCSEEE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC----CCCceEEEECchhhccCCCCcCE
Confidence 3457889999999999999999998 678999999999999999999874322 13469999999998755678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH---hcCceEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV---FGKKLYVL 226 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---F~~~v~~~ 226 (269)
|++|... ..++++.+.+.|+|||.+++..... .....+.+.+++. |. .+..+
T Consensus 166 v~~~~~~---------~~~~l~~~~~~L~~gG~l~~~~~~~------------~~~~~~~~~l~~~g~~f~-~~~~~ 220 (255)
T 3mb5_A 166 VILDLPQ---------PERVVEHAAKALKPGGFFVAYTPCS------------NQVMRLHEKLREFKDYFM-KPRTI 220 (255)
T ss_dssp EEECSSC---------GGGGHHHHHHHEEEEEEEEEEESSH------------HHHHHHHHHHHHTGGGBS-CCEEE
T ss_pred EEECCCC---------HHHHHHHHHHHcCCCCEEEEEECCH------------HHHHHHHHHHHHcCCCcc-ccEEE
Confidence 9997542 2578999999999999999977432 2345566667665 64 34443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=113.64 Aligned_cols=115 Identities=13% Similarity=0.108 Sum_probs=89.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
+.+..+|||+|||+|.++..+++.+ |..+|+++|+++.+++.|++++.... ..++++++.+|+.++ ..+++||
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN----LIDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT----CGGGEEEECSCGGGGGGTCCSCEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCeEEEECCHHHHhhhccCCce
Confidence 4577899999999999999999875 56799999999999999999875322 125799999999887 4557899
Q ss_pred EEEEcCCC-CCCCCCCC----CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 152 GILVDLFS-KGSLLSEL----EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 152 ~I~~d~~~-~~~~~~~l----~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+|+++..- +....... ...++++.+.+.|+|||.+++..+..
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 99988532 10000011 12479999999999999999987654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-14 Score=117.16 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++..........++++++.+|+... ...++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 467899999999999999999877778999999999999999998753221000013799999998655 4557999999
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+... ..++.. .++++.+++.|+|||++++...
T Consensus 108 ~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 108 VIEV-----IEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EESC-----GGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred eHHH-----HHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 7532 222222 5899999999999998877543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=123.94 Aligned_cols=134 Identities=21% Similarity=0.256 Sum_probs=98.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||+|||+|.++..+++.+|+.+|++||+|+.+++.|++++..+... ...+++++.+|+.+....++||+|++
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~--~~~~v~~~~~D~~~~~~~~~fD~Ii~ 298 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGVEPFRFNAVLC 298 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGG--GGGGEEEEECSTTTTCCTTCEEEEEE
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCC--cCceEEEEechhhccCCCCCeeEEEE
Confidence 3468999999999999999999999999999999999999999987533210 12368999999988756679999999
Q ss_pred cCCCCCCC-CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 156 DLFSKGSL-LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 156 d~~~~~~~-~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
+..-+... ...-...++++.+++.|+|||.+++...... .....+++.|+ .+..+.
T Consensus 299 nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~---------------~~~~~l~~~fg-~~~~~a 355 (375)
T 4dcm_A 299 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL---------------DYFHKLKKIFG-NCTTIA 355 (375)
T ss_dssp CCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS---------------CHHHHHHHHHS-CCEEEE
T ss_pred CCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc---------------CHHHHHHHhcC-CEEEEe
Confidence 75432110 1111124799999999999999998664331 11355788897 455443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=119.82 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=92.4
Q ss_pred HHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c
Q 035593 67 DAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S 145 (269)
Q Consensus 67 ~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~ 145 (269)
+.+.....+.++.+|||||||+|.++..+++..|+.+|+++|+++.+++.|++++.... .++++++.+|+.+. .
T Consensus 27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~ 101 (276)
T 3mgg_A 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG-----IKNVKFLQANIFSLPF 101 (276)
T ss_dssp HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGGCCS
T ss_pred HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEcccccCCC
Confidence 33334445567899999999999999999999889999999999999999999874322 24799999999987 5
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..++||+|++...-.. . -....+++.+++.|+|||.+++...
T Consensus 102 ~~~~fD~v~~~~~l~~-~---~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 102 EDSSFDHIFVCFVLEH-L---QSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp CTTCEEEEEEESCGGG-C---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCeeEEEEechhhh-c---CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 5689999997532211 1 1236899999999999999998653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-14 Score=119.39 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=86.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc----CCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL----KDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~----~~~yD 151 (269)
.++.+|||||||+|..+..++..+|+.+|++||+++.+++.|+++..... -.+++++++|+.++.. .++||
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----l~~v~~~~~d~~~~~~~~~~~~~fD 153 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG-----LKGARALWGRAEVLAREAGHREAYA 153 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEECCHHHHTTSTTTTTCEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCceEEEECcHHHhhcccccCCCce
Confidence 35789999999999999999998899999999999999999998864322 2359999999988732 47899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|++.+... ...+++.+.+.|+|||.+++...
T Consensus 154 ~I~s~a~~~--------~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 154 RAVARAVAP--------LCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EEEEESSCC--------HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred EEEECCcCC--------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 999875432 36899999999999999987654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-12 Score=110.92 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=83.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCCCe
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~~y 150 (269)
+.+..+|||||||+|.++..+++..+..+|++||+++.+++.|+++... .++++++.+|+.. ....++|
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGTTTSCCE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-------CCCeEEEECCCCCcccccccCccE
Confidence 4567899999999999999999987778999999999999999988642 2579999999987 4223789
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+.+...+. ....+++.+.+.|+|||.+++.
T Consensus 145 D~v~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIYEDVAQPN------QAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEECCCSTT------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEecCChh------HHHHHHHHHHHhCCCCcEEEEE
Confidence 99997643211 1367899999999999999886
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=116.71 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=86.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-cccccCCCCcEEEEEcccccc----ccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-EKLEKSYPDRLFVYVGNALKA----SLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-~~~~~~~~~rv~~~~~D~~~~----~~~~~yD 151 (269)
+..+|||||||+|.++..+++.+|+.+|++||+++.+++.|++++.. .........+++++.+|+.+. ...+.||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 46789999999999999999988999999999999999999876421 000000135799999999874 2467899
Q ss_pred EEEEcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.|++...++.... ..+....+++.+.+.|+|||.|++...
T Consensus 126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 9998654432111 123346899999999999999998764
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=114.68 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=85.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c--cC---
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S--LK--- 147 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~--~~--- 147 (269)
.++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|++++.... ...+++++.+|+.+. . ..
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~i~~~~~d~~~~~~~~~~~~~~ 143 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKIDLRLKPALETLDELLAAGEA 143 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC----CCCeEEEEEcCHHHHHHHHHhcCCC
Confidence 3678999999999999999998776 7899999999999999999874322 135899999999775 1 11
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++||+|++|.... ...++++.+.+.|+|||++++.-
T Consensus 144 ~~~D~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 144 GTFDVAVVDADKE-------NCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp TCEEEEEECSCST-------THHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCccEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEEC
Confidence 7899999986422 24689999999999999998853
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=120.15 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=90.0
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCC
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKD 148 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~ 148 (269)
+.....+.+..+|||||||+|.++..+++.++ .+|+++|+++.+++.|++++...+ ...+++++.+|+.++ .+
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~--~~ 136 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD----SPRRKEVRIQGWEEF--DE 136 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC----CSSCEEEEECCGGGC--CC
T ss_pred HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECCHHHc--CC
Confidence 33333456788999999999999999999765 899999999999999999874322 134899999999887 78
Q ss_pred CeeEEEEcCCCCCCCCC------CCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 149 GFSGILVDLFSKGSLLS------ELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~------~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+||+|++...-. ..+. .-....+++++++.|+|||.+++..+..
T Consensus 137 ~fD~v~~~~~~~-~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 137 PVDRIVSLGAFE-HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp CCSEEEEESCGG-GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred CccEEEEcchHH-hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 999999753211 1111 0112689999999999999999987644
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=113.98 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=88.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+.++.+|||||||+|.++..+++.. |..+|+++|+++.+++.|++++.... .++++++.+|+.+. ...++||+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~ 109 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-----LKNVEVLKSEENKIPLPDNTVDF 109 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECBTTBCSSCSSCEEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEecccccCCCCCCCeeE
Confidence 4567899999999999999999886 67899999999999999999874322 24799999999887 55678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|++...-.. . -....+++++++.|+|||.+++..+..
T Consensus 110 v~~~~~l~~-~---~~~~~~l~~~~~~LkpgG~l~i~~~~~ 146 (219)
T 3dh0_A 110 IFMAFTFHE-L---SEPLKFLEELKRVAKPFAYLAIIDWKK 146 (219)
T ss_dssp EEEESCGGG-C---SSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred EEeehhhhh-c---CCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence 997532211 1 124689999999999999999876543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=118.90 Aligned_cols=104 Identities=22% Similarity=0.265 Sum_probs=87.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--cc--CCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SL--KDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~--~~~yD 151 (269)
.++.+|||||||+|..+..+++.+|+.+|+++|+++.+++.|++++.... ...+++++.+|+.+. .. .++||
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG----LESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECCHHHHHHhcccCCCcc
Confidence 36789999999999999999998888999999999999999999874322 135799999999886 22 57899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+++.... ...++++.+.+.|+|||++++..
T Consensus 129 ~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAAKG-------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEGGGS-------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 999976432 24789999999999999999863
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=118.01 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=90.3
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
...+.+.....+.++.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++++.... ..++++++.+|+.+
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG----VSERVHFIHNDAAG 97 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCCTT
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEECChHh
Confidence 344445433345678899999999999999999876 6799999999999999998864221 13579999999988
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEe
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
....++||+|++.... .++ ....+++++++.|||||.+++..
T Consensus 98 ~~~~~~fD~V~~~~~~-----~~~~~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 98 YVANEKCDVAACVGAT-----WIAGGFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp CCCSSCEEEEEEESCG-----GGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCcCCCCCEEEECCCh-----HhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence 7337889999973211 111 24789999999999999998854
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=119.59 Aligned_cols=106 Identities=19% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.+..+|||||||+|.++..+++. +..+|+++|+++.+++.|+++.... ..+++++.+|+.+. ..+++||+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~fD~ 131 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhc------CCCeEEEecCHHHhhcccCCCceEE
Confidence 46789999999999999999763 4459999999999999999987532 35799999999886 34578999
Q ss_pred EEEcCCCCCCCC-CCCC-cHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLL-SELE-DPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~-~~l~-~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|++|.+.. ... .+.. ...+++++++.|||||++++.
T Consensus 132 V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 132 ILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred EEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 99975442 111 1111 136799999999999999864
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-14 Score=118.32 Aligned_cols=110 Identities=7% Similarity=-0.009 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-------cCCCCcEEEEEccccccc-c
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-------KSYPDRLFVYVGNALKAS-L 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-------~~~~~rv~~~~~D~~~~~-~ 146 (269)
+.++.+|||+|||+|..+..++++ +.+|++||+++.|++.|+++.+..... ....++++++++|+.++. .
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 346789999999999999999985 679999999999999999886531000 001357999999999883 3
Q ss_pred C-CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 147 K-DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 147 ~-~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
. ++||+|++...-. ..+. -....++++++++|||||.+++
T Consensus 98 ~~~~fD~v~~~~~l~-~l~~-~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMI-ALPA-DMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp HHHSEEEEEEESCGG-GSCH-HHHHHHHHHHHHHSCSEEEEEE
T ss_pred cCCCEEEEEECcchh-hCCH-HHHHHHHHHHHHHcCCCcEEEE
Confidence 2 6899999632111 1111 1124689999999999998333
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=119.25 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=87.5
Q ss_pred cCCCCC-CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---c
Q 035593 71 TLPPIL-PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---L 146 (269)
Q Consensus 71 ~~~~l~-~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~ 146 (269)
.+..+. ++.+|||+|||+|.++..++++.+. +|++||+++.+++.|++++...++ ..+++++.+|+.++. .
T Consensus 42 ~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~----~~~v~~~~~D~~~~~~~~~ 116 (259)
T 3lpm_A 42 KFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQL----EDQIEIIEYDLKKITDLIP 116 (259)
T ss_dssp HHCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTC----TTTEEEECSCGGGGGGTSC
T ss_pred HHhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCC----cccEEEEECcHHHhhhhhc
Confidence 333455 7889999999999999999986544 999999999999999998754432 357999999999873 3
Q ss_pred CCCeeEEEEcCCCCCC----CC-C--------C---CCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGS----LL-S--------E---LEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~----~~-~--------~---l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.++||+|+++.+-... .. + + ....++++.+.+.|+|||.+++..
T Consensus 117 ~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 117 KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 6799999997432110 00 0 0 112479999999999999999854
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=120.05 Aligned_cols=118 Identities=23% Similarity=0.325 Sum_probs=93.5
Q ss_pred HHHHHh-cCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 65 YFDAFA-TLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 65 y~~~~~-~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
+.+.+. .+..+.++.+|||||||+|..+..+++.+| +.+|+++|++|.+++.|++++... ..+++++++|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~v~~~~~d~~ 82 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL------PYDSEFLEGDAT 82 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS------SSEEEEEESCTT
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEEcchh
Confidence 444443 333456789999999999999999999888 589999999999999999987532 248999999999
Q ss_pred ccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 143 KASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 143 ~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...++||+|++...-. .. -...++++++++.|+|||.+++....
T Consensus 83 ~~~~~~~fD~v~~~~~l~-~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 83 EIELNDKYDIAICHAFLL-HM---TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp TCCCSSCEEEEEEESCGG-GC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCcCCCeeEEEECChhh-cC---CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 884467999999864321 11 12368999999999999999987654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-14 Score=114.06 Aligned_cols=109 Identities=15% Similarity=-0.018 Sum_probs=85.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.++.+|||+|||+|.++..+++ .+..+|+++|+|+.+++.|++++.... -++++++++|+.++ ...++||+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALS-RGAASVLFVESDQRSAAVIARNIEALG-----LSGATLRRGAVAAVVAAGTTSPVDL 116 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHT-----CSCEEEEESCHHHHHHHCCSSCCSE
T ss_pred CCCCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEccHHHHHhhccCCCccE
Confidence 3678999999999999998877 356689999999999999999875332 25799999999987 23679999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHh--hccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQ--CLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~--~L~pgG~l~~~~~~~ 193 (269)
|++|..-.. . .-...++++.+.+ .|+|||++++.....
T Consensus 117 i~~~~p~~~--~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 117 VLADPPYNV--D-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp EEECCCTTS--C-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred EEECCCCCc--c-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 999743211 0 0113578999998 999999999987544
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-14 Score=115.64 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=86.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||+|||+|..+..+++.+|+.+++++|+++.+++.|++++.... -++++++.+|+.++...++||+|++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-----LENIEPVQSRVEEFPSEPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-----CSSEEEEECCTTTSCCCSCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEecchhhCCccCCcCEEEEe
Confidence 5789999999999999999998889999999999999999998864322 23599999999887555789999975
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
... ....+++.+++.|+|||.+++....
T Consensus 140 ~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 140 AFA--------SLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp CSS--------SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred ccC--------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 431 1468999999999999999987643
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=120.54 Aligned_cols=106 Identities=22% Similarity=0.308 Sum_probs=82.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccC-----C
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLK-----D 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~-----~ 148 (269)
++.+|||||||+|..+..+++..+ +.+|++||+++.+++.|++++.... ..++++++.+|+.++ ... +
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~~ 133 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG----LQDKVTILNGASQDLIPQLKKKYDVD 133 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCceEEEECCHHHHHHHHHHhcCCC
Confidence 678999999999999999998765 7899999999999999999874322 134799999999775 222 6
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+||+|++|..... .....++++.+ +.|+|||++++...
T Consensus 134 ~fD~V~~d~~~~~----~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 134 TLDMVFLDHWKDR----YLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp CCSEEEECSCGGG----HHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred ceEEEEEcCCccc----chHHHHHHHhc-cccCCCeEEEEeCC
Confidence 8999999864321 11123567777 99999999998544
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=118.88 Aligned_cols=126 Identities=13% Similarity=0.037 Sum_probs=98.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||+|||+|.++..+++..+..+|+++|++|.+++.|++++..+. -.+++++.+|+.++...++||+|+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~-----l~~~~~~~~d~~~~~~~~~~D~Vi 191 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK-----LNNVIPILADNRDVELKDVADRVI 191 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT-----CSSEEEEESCGGGCCCTTCEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEECChHHcCccCCceEEE
Confidence 557889999999999999999998777899999999999999999875443 246899999999882256899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
+|... ...+++..+.+.|+|||++++.++.... .......+.++.+.+.++
T Consensus 192 ~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~~~~~-------~~~~~~~~~~~~~~~~~~ 242 (272)
T 3a27_A 192 MGYVH--------KTHKFLDKTFEFLKDRGVIHYHETVAEK-------IMYERPIERLKFYAEKNG 242 (272)
T ss_dssp ECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEEEGG-------GTTTHHHHHHHHHHHHTT
T ss_pred ECCcc--------cHHHHHHHHHHHcCCCCEEEEEEcCccc-------cccccHHHHHHHHHHHhC
Confidence 98542 2467999999999999999988865421 001234566677777654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=115.15 Aligned_cols=104 Identities=20% Similarity=0.306 Sum_probs=85.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cC--C
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LK--D 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~--~ 148 (269)
++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++.... ..++++++.+|+.+. . .. +
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~~d~~~~l~~l~~~~~~~ 147 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG----VAEKISLRLGPALATLEQLTQGKPLP 147 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 578999999999999999999776 7899999999999999999874322 124799999998765 1 12 7
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+||+|++|.... ...++++.+.+.|+|||++++.-.
T Consensus 148 ~fD~V~~d~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 148 EFDLIFIDADKR-------NYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp CEEEEEECSCGG-------GHHHHHHHHHHTEEEEEEEEEECT
T ss_pred CcCEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEeCC
Confidence 899999986421 146899999999999999998643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-11 Score=103.61 Aligned_cols=103 Identities=23% Similarity=0.321 Sum_probs=83.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+.+..+|||+|||+|.++..+++.. ++.+|+++|+++.+++.+++.... .++++++.+|+.+. ...++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~ 143 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECCTTCGGGGTTTCCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-------cCCCEEEEccCCCcchhhcccCC
Confidence 4567899999999999999999875 568999999999999999988753 25799999999873 23468
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
||+|++|..... ....+++.+.+.|+|||.+++..
T Consensus 144 ~D~v~~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 144 VDVIFEDVAQPT------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEEECCCSTT------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEECCCCHh------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 999998754211 12356999999999999998873
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=115.32 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=85.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++.+. ..+++++.+|+.++ ...++||+|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGGCCCCTTCEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhhCCCCCCCeEEE
Confidence 34688999999999999999998533 399999999999999999875 25799999999887 456899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...-. .. -...++++++++.|+|||.+++....
T Consensus 113 ~~~~~l~-~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 113 LSSLALH-YI---ASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEESCGG-GC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEchhhh-hh---hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9753211 01 12478999999999999999997644
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-13 Score=114.82 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=87.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||+|||+|.++..+++.+|+.+|+++|+++.+++.|++++.... -++++++.+|+.+....++||+|++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~fD~Iv~ 182 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA-----IKNIHILQSDWFSALAGQQFAMIVS 182 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT-----CCSEEEECCSTTGGGTTCCEEEEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEcchhhhcccCCccEEEE
Confidence 46789999999999999999988899999999999999999999874322 2479999999987644678999999
Q ss_pred cCCCCCC-----------CCCC--C--------CcHHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGS-----------LLSE--L--------EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~-----------~~~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+.+-... ..+. + ....+++.+.+.|+|||.+++...
T Consensus 183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7432111 0010 1 125788999999999999998753
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=120.59 Aligned_cols=107 Identities=17% Similarity=0.056 Sum_probs=87.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccC------
Q 035593 76 LPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLK------ 147 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~------ 147 (269)
.++.+|||||||+|..+..+++.+ ++.+|+++|+++.+++.|++++.... ...++++++++|+.++ ...
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP---DTYKNVSFKISSSDDFKFLGADSVDK 111 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC----CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc---CCCCceEEEEcCHHhCCccccccccC
Confidence 368899999999999999999876 78999999999999999999864320 0146899999999987 334
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++||+|++... ..++....+++++++.|+|||.+++..
T Consensus 112 ~~fD~V~~~~~-----l~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 112 QKIDMITAVEC-----AHWFDFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp SCEEEEEEESC-----GGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEeHhhH-----HHHhCHHHHHHHHHHhcCCCcEEEEEe
Confidence 79999998532 222345799999999999999998844
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=115.77 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=89.6
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK 147 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~ 147 (269)
.++......++.+|||||||+|.++..+++.+|+.+++++|+++.+++.|++.. ++++++.+|+.++...
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~ 93 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLATWKPA 93 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTTCCCS
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhhcCcc
Confidence 343333345788999999999999999999888899999999999999999872 3689999999887656
Q ss_pred CCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 148 DGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++||+|++...-+ ++ ....+++++++.|+|||.+++..+..
T Consensus 94 ~~fD~v~~~~~l~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 94 QKADLLYANAVFQ-----WVPDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp SCEEEEEEESCGG-----GSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred CCcCEEEEeCchh-----hCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 7899999853211 11 24689999999999999999987543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=118.28 Aligned_cols=109 Identities=13% Similarity=0.004 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc-------ccc-----CCCCcEEEEEccccc
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK-------LEK-----SYPDRLFVYVGNALK 143 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~-------~~~-----~~~~rv~~~~~D~~~ 143 (269)
.++.+|||+|||+|..+.+|++. +.+|++||+++.+++.|++..+... ... ....+++++++|+.+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 36789999999999999999984 7799999999999999987764210 000 013689999999998
Q ss_pred ccc--CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 144 ASL--KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 144 ~~~--~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+.. .++||+|+....-. ..++ -....+++.+++.|||||++++
T Consensus 145 l~~~~~~~FD~V~~~~~l~-~l~~-~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALV-AINP-GDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp GGGGCCCCEEEEEESSSTT-TSCG-GGHHHHHHHHHHTEEEEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhh-hCCH-HHHHHHHHHHHHHcCCCeEEEE
Confidence 833 37999999642211 1221 1235799999999999999864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-14 Score=122.39 Aligned_cols=106 Identities=18% Similarity=0.086 Sum_probs=88.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||+|||+|.++..+++..+. +|+++|+||.+++.|++++..+.. ..+++++++|+.++...++||+|+
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~----~~~v~~~~~D~~~~~~~~~fD~Vi 197 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPGENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCCCSCEEEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECCHHHhcccCCccEEE
Confidence 456889999999999999999987544 899999999999999998754431 346999999999985578999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+|.... ..++++.+.+.|+|||++++...++
T Consensus 198 ~~~p~~--------~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 198 MGYVVR--------THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp ECCCSS--------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCchh--------HHHHHHHHHHHCCCCeEEEEEEeec
Confidence 975421 3689999999999999999876653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=116.55 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=87.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.++.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++++.. .++++++.+|+.+. ...++||+
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~ 123 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG-------NNKIIFEANDILTKEFPENNFDL 123 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS-------CTTEEEEECCTTTCCCCTTCEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEECccccCCCCCCcEEE
Confidence 34567899999999999999999876 78999999999999999998752 15899999999987 45789999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++...-. ..+ .-....+++++++.|+|||.+++....
T Consensus 124 v~~~~~l~-~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 124 IYSRDAIL-ALS-LENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp EEEESCGG-GSC-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeHHHHHH-hcC-hHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99752211 010 012468999999999999999987643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=109.77 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=86.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++...........+++++.+|+... ...++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46789999999999999999985 77999999999999999998753321111134799999999887 4578999999
Q ss_pred EcCCCCCCCCCCCCc-H---HHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELED-P---NTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~-~---e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+... ..++.. . .+++.+++.|+|||.+++..+..
T Consensus 107 ~~~~-----l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 107 MQAF-----LTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EESC-----GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred Ecch-----hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 7532 112222 3 79999999999999999876544
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=114.29 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=84.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++.. .++++++.+|+.++...++||+|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~fD~v~ 119 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKR-------WSHISWAATDILQFSTAELFDLIV 119 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTT-------CSSEEEEECCTTTCCCSCCEEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhccc-------CCCeEEEEcchhhCCCCCCccEEE
Confidence 446789999999999999999885 46999999999999999998753 247999999999886678999999
Q ss_pred EcCCCCCCCCCCCCc----HHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELED----PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~----~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+... ..++.. ..+++.+++.|+|||.+++...
T Consensus 120 ~~~~-----l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 120 VAEV-----LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EESC-----GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EccH-----HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 8522 223322 4779999999999999998653
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-11 Score=104.59 Aligned_cols=147 Identities=14% Similarity=0.250 Sum_probs=93.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+.|..+|||+|||+|..+..+++.. +..+|+++|+++.+++...+.... ..++.++.+|++.. ...++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-------r~nv~~i~~Da~~~~~~~~~~~~ 146 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-------RPNIFPLLADARFPQSYKSVVEN 146 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-------CTTEEEEECCTTCGGGTTTTCCC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCeEEEEcccccchhhhccccc
Confidence 5678999999999999999998864 578999999999886443332210 24699999999864 22468
Q ss_pred eeEEEEcCCCCCCCCCCCCcHH-HHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPN-TWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLS 227 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e-~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~ 227 (269)
||+|++|+..+ ...+ +.+.+.+.|||||.|++.+-..+.+ ...+.........+.|++. |. -+..+.
T Consensus 147 ~D~I~~d~a~~-------~~~~il~~~~~~~LkpGG~lvisik~~~~d---~t~~~~e~~~~~~~~L~~~gf~-~~~~~~ 215 (232)
T 3id6_C 147 VDVLYVDIAQP-------DQTDIAIYNAKFFLKVNGDMLLVIKARSID---VTKDPKEIYKTEVEKLENSNFE-TIQIIN 215 (232)
T ss_dssp EEEEEECCCCT-------THHHHHHHHHHHHEEEEEEEEEEEC----------CCSSSSTTHHHHHHHHTTEE-EEEEEE
T ss_pred eEEEEecCCCh-------hHHHHHHHHHHHhCCCCeEEEEEEccCCcc---cCCCHHHHHHHHHHHHHHCCCE-EEEEec
Confidence 99999986432 1233 4456666999999999876443310 0111122344566667664 63 344444
Q ss_pred cCCC--CceEEEEe
Q 035593 228 LGNR--KDDSLIAL 239 (269)
Q Consensus 228 ~~~~--~n~v~~~~ 239 (269)
.... ...++++.
T Consensus 216 l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 216 LDPYDKDHAIVLSK 229 (232)
T ss_dssp CTTTCSSCEEEEEE
T ss_pred cCCCcCceEEEEEE
Confidence 4322 34445543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-13 Score=111.06 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=84.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+.+|||||||+|.++..+++. ++.+++++|+++.+++.|++++.... ..++++++.+|+.+. ...++||+|++.
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 118 (219)
T 3dlc_A 44 AGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN----LNDRIQIVQGDVHNIPIEDNYADLIVSR 118 (219)
T ss_dssp EEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc----ccCceEEEEcCHHHCCCCcccccEEEEC
Confidence 349999999999999999997 78899999999999999999874322 135899999999987 556799999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-.. . -....+++++++.|+|||.+++..
T Consensus 119 ~~l~~-~---~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 119 GSVFF-W---EDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp SCGGG-C---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHhh-c---cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 32111 1 124689999999999999998864
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.6e-14 Score=121.63 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=84.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc----------------------------
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE---------------------------- 127 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~---------------------------- 127 (269)
.++++|||||||+|.++..+++.++..+|++||+|+.+++.|++++......
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3678999999999999999999988899999999999999999886421100
Q ss_pred -------------------------cCCCCcEEEEEccccccc------cCCCeeEEEEcCCCCCCCC---CCCCcHHHH
Q 035593 128 -------------------------KSYPDRLFVYVGNALKAS------LKDGFSGILVDLFSKGSLL---SELEDPNTW 173 (269)
Q Consensus 128 -------------------------~~~~~rv~~~~~D~~~~~------~~~~yD~I~~d~~~~~~~~---~~l~~~e~~ 173 (269)
.....+++++++|+.... ..++||+|++...... .. ..-....++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~-ihl~~~~~~~~~~l 203 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKW-VHLNWGDEGLKRMF 203 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHH-HHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHH-hhhcCCHHHHHHHH
Confidence 000148999999987542 5679999997432100 00 000235899
Q ss_pred HHHHhhccCCcEEEEEe
Q 035593 174 EKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 174 ~~~~~~L~pgG~l~~~~ 190 (269)
++++++|+|||+|++..
T Consensus 204 ~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHEEEEEEEEEEC
T ss_pred HHHHHHhCCCcEEEEec
Confidence 99999999999999864
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-13 Score=113.20 Aligned_cols=104 Identities=18% Similarity=0.301 Sum_probs=84.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-c------
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-L------ 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~------ 146 (269)
.++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|++++.... ...+++++.+|+.+. . .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~v~~~~~d~~~~~~~~~~~~~~ 134 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG----LENKIFLKLGSALETLQVLIDSKSA 134 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHHCSSC
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCEEEEECCHHHHHHHHHhhccc
Confidence 3678999999999999999999877 7899999999999999999874322 124699999999774 1 1
Q ss_pred ---------C-CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 ---------K-DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ---------~-~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
. ++||+|+++.... ...++++.+.+.|+|||++++..
T Consensus 135 ~~~~~~f~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 135 PSWASDFAFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp CGGGTTTCCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccccCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 7899999874321 13589999999999999999864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=118.72 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCcc-ccccCCCCcEEEEEccccccccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALE-KLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~-~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
+.+..+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|++++... . .++++++.+|+.+....++||+
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~~~~~~~fD~ 182 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADFISDQMYDA 182 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTCCCSCCEEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECchhccCcCCCccE
Confidence 456789999999999999999987 67889999999999999999987432 1 2579999999988645578999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+++... ..++++.+.+.|+|||.+++....
T Consensus 183 Vi~~~~~---------~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 183 VIADIPD---------PWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp EEECCSC---------GGGSHHHHHHTEEEEEEEEEEESS
T ss_pred EEEcCcC---------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9986432 257999999999999999998753
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=111.61 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=83.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++.... -++++++.+|+.+. ...++||+
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~D~ 146 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLD-----LHNVSTRHGDGWQGWQARAPFDA 146 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC-----CCceEEEECCcccCCccCCCccE
Confidence 4567889999999999999999986 6899999999999999999875322 24799999999886 55679999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+++...+ ++. +.+.+.|+|||++++.+..
T Consensus 147 i~~~~~~~-----~~~-----~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 147 IIVTAAPP-----EIP-----TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEESSBCS-----SCC-----THHHHTEEEEEEEEEEECS
T ss_pred EEEccchh-----hhh-----HHHHHhcccCcEEEEEEcC
Confidence 99875332 111 2588999999999998865
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=111.60 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=85.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|.++..+++. +.+|+++|+++.+++.|++. + .++++++.+|+.++...++||+|+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~-~--------~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH-G--------LDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG-C--------CTTEEEEECCTTSCCCSSCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc-C--------CCCeEEEecccccCCCCCceeEEE
Confidence 556789999999999999999986 67999999999999999982 2 257999999998886678999999
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+... ..++.. ..+++++++.|+|||.+++...+.
T Consensus 113 ~~~~-----l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 113 FAHW-----LAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EESC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred Eech-----hhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 7532 223333 689999999999999999987654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.4e-13 Score=114.45 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=87.9
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCcc-ccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALE-KLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~-~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
.+.+..+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|++++... . .++++++.+|+.+. ...++|
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~~ 167 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-----VENVRFHLGKLEEAELEEAAY 167 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----CCCEEEEESCGGGCCCCTTCE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CCCEEEEECchhhcCCCCCCc
Confidence 3557889999999999999999987 56889999999999999999986422 1 35799999999887 555789
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+|+++..+ ..++++.+.+.|+|||.+++....
T Consensus 168 D~v~~~~~~---------~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 168 DGVALDLME---------PWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp EEEEEESSC---------GGGGHHHHHHHEEEEEEEEEEESC
T ss_pred CEEEECCcC---------HHHHHHHHHHhCCCCCEEEEEeCC
Confidence 999997532 247999999999999999998743
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=119.57 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=87.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++++.... ..++++++.+|+.+. ...++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELR----IDDHVRSRVCNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC----CCCceEEEECChhcCCCCCCCEeEE
Confidence 5678899999999999999999864 6899999999999999999864322 135899999999987 456899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++.. ...++...++++++++.|+|||.+++..+
T Consensus 190 ~~~~-----~l~~~~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 190 WNNE-----STMYVDLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp EEES-----CGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECC-----chhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9742 12223368999999999999999988664
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=112.01 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=83.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++ ++++++.+|+.++ ...++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccccccCCCCeEEEEeh
Confidence 789999999999999999984 679999999999999999874 3689999999887 456899999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-. ..+ .-....+++++++.|+|||.+++..+..
T Consensus 110 ~~l~-~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 110 YSLI-HMG-PGELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp SSST-TCC-TTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred hhHh-cCC-HHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 3211 111 1134789999999999999999987554
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=115.37 Aligned_cols=105 Identities=15% Similarity=0.229 Sum_probs=83.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++++.... .++++++.+|+.++ ..+++||+|
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~l~~~~~~fD~V 107 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQMPFTDERFHIV 107 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEecHHhCCCCCCCEEEE
Confidence 4478899999999999999998864 499999999999999998864221 24799999999887 456799999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...-. ..+ ....+++++++.|+|||.+++..
T Consensus 108 ~~~~~l~-~~~---d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 108 TCRIAAH-HFP---NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp EEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEhhhhH-hcC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 9763211 111 23689999999999999998854
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=115.46 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=86.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++.... ..++++++.+|+.+. ..+++||+
T Consensus 58 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~ 132 (273)
T 3bus_A 58 DVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG----LANRVTFSYADAMDLPFEDASFDA 132 (273)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCSCTTCEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEECccccCCCCCCCccE
Confidence 35578899999999999999999875 7899999999999999998864221 135799999999887 45679999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++...-. ..+ ....+++++++.|+|||.+++...
T Consensus 133 v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 133 VWALESLH-HMP---DRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp EEEESCTT-TSS---CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEEechhh-hCC---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99743211 111 247899999999999999988664
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=113.51 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCe
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~y 150 (269)
+.++.+|||||||+|..+..+++..++.+|++||++|.+++.+.+.... ..++.++.+|+... ...++|
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-------~~~v~~~~~d~~~~~~~~~~~~~f 127 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIVEKV 127 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTCCCE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-------CCCeEEEEcCCCCchhhcccccce
Confidence 4567899999999999999999887767999999999877655443321 13688899998763 224789
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+|+++...+ .....+++++++.|||||.+++.+
T Consensus 128 D~V~~~~~~~------~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 128 DLIYQDIAQK------NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEEEECCCST------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeccCh------hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999974221 112346899999999999999875
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-13 Score=112.79 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=86.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-cC--CCCcEEEEEcccccc----ccCC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-KS--YPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-~~--~~~rv~~~~~D~~~~----~~~~ 148 (269)
.+..+|||||||+|.++..+++..|+.+|++||+++.+++.|++++...... .. .-++++++.+|+.++ ....
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 3567899999999999999999888889999999999999998876321000 00 024799999999874 2357
Q ss_pred CeeEEEEcCCCCCCC----CCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSL----LSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~----~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|.|++...++..- ...+...++++.+.+.|+|||.|++..
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 899998765443211 112234799999999999999999865
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-14 Score=123.32 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=86.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHH-HHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLIL-DLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~-~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
+.++.+|||||||+|..+..++ ...|+.+|+++|+++.+++.|++++.... ...+++++.+|+.+....++||+|
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~fD~v 191 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA----LAGQITLHRQDAWKLDTREGYDLL 191 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEECCGGGCCCCSCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECchhcCCccCCeEEE
Confidence 4578899999999999999985 44678999999999999999999875432 134799999999988434899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++...-. ..+......++++++++.|+|||++++..+..
T Consensus 192 ~~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 192 TSNGLNI-YEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp ECCSSGG-GCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred EECChhh-hcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 9743111 01111111248999999999999999977543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-13 Score=114.90 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=87.2
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCC
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKD 148 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~ 148 (269)
+.....+.++.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++++.... ..++++++.+|+.++. +
T Consensus 56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~--~ 128 (287)
T 1kpg_A 56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE----NLRSKRVLLAGWEQFD--E 128 (287)
T ss_dssp HHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC----CCSCEEEEESCGGGCC--C
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCC--C
Confidence 3333345678899999999999999999655 4599999999999999999864221 1358999999997764 7
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+||+|++...-. ..+ .-....+++++++.|||||.+++....
T Consensus 129 ~fD~v~~~~~l~-~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 129 PVDRIVSIGAFE-HFG-HERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp CCSEEEEESCGG-GTC-TTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CeeEEEEeCchh-hcC-hHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 899999752111 011 112468999999999999999987654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=115.49 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=86.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|..+..+++ ++.+|+++|+++.+++.|++++.... ...+++++.+|+.++...++||+|++.
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~fD~v~~~ 139 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSP----KAEYFSFVKEDVFTWRPTELFDLIFDY 139 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSG----GGGGEEEECCCTTTCCCSSCEEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccC----CCcceEEEECchhcCCCCCCeeEEEEC
Confidence 456999999999999999876 67899999999999999999875321 135799999999988666699999975
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-. ..+ .-....+++.+++.|+|||.+++..+..
T Consensus 140 ~~l~-~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 140 VFFC-AIE-PEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp SSTT-TSC-GGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred hhhh-cCC-HHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 3221 111 1124689999999999999999876644
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-14 Score=112.54 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=85.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~ 152 (269)
..++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++.... ..++++++.+|+.++ ...++||+
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~fD~ 103 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK----AENRFTLLKMEAERAIDCLTGRFDL 103 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT----CGGGEEEECSCHHHHHHHBCSCEEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECcHHHhHHhhcCCCCE
Confidence 446789999999999999999885 56799999999999999999875332 124799999999885 34567999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHH--hhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLR--QCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~--~~L~pgG~l~~~~~~~ 193 (269)
|+++..-. .....++++.+. +.|+|||++++.....
T Consensus 104 i~~~~~~~-----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 104 VFLDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp EEECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EEECCCCC-----cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 99874211 011357778887 8999999999988654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=113.76 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=83.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++.+. . +++++.+|+.+...+++||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~--------~-~v~~~~~d~~~~~~~~~fD~v~~ 109 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK--------D-GITYIHSRFEDAQLPRRYDNIVL 109 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC--------S-CEEEEESCGGGCCCSSCEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhh--------C-CeEEEEccHHHcCcCCcccEEEE
Confidence 467899999999999999998854 489999999999999999864 2 69999999988756678999997
Q ss_pred cCCCCCCCCCCC-CcHHHHHHHH-hhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSEL-EDPNTWEKLR-QCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l-~~~e~~~~~~-~~L~pgG~l~~~~~~~ 193 (269)
... ..++ ....++++++ +.|+|||.+++...+.
T Consensus 110 ~~~-----l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 110 THV-----LEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp ESC-----GGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred hhH-----HHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 532 1222 2368999999 9999999999987543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-13 Score=112.15 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=85.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++... .++++++.+|+.+. ...++||+|+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~ 121 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE--------GPDLSFIKGDLSSLPFENEQFEAIM 121 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC--------BTTEEEEECBTTBCSSCTTCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc--------cCCceEEEcchhcCCCCCCCccEEE
Confidence 46789999999999999999984 6799999999999999998853 35799999999988 4578999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+...-. .. -....+++.+++.|+|||.+++...++
T Consensus 122 ~~~~l~-~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 122 AINSLE-WT---EEPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp EESCTT-SS---SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcChHh-hc---cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 753221 11 123589999999999999999987554
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=113.81 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=84.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.++.+|||||||+|.++..+++..+ +++++|+++.+++.|++++... .++++++.+|+.+. ...++||+|
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~~~D~v 107 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR------ESNVEFIVGDARKLSFEDKTFDYV 107 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT------TCCCEEEECCTTSCCSCTTCEEEE
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc------CCCceEEECchhcCCCCCCcEEEE
Confidence 34578999999999999999998654 9999999999999999987432 25799999999887 456789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...-. ........++++.+++.|+|||.+++....
T Consensus 108 ~~~~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 108 IFIDSIV--HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp EEESCGG--GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcCchH--hCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9763200 000011358999999999999999987754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=114.30 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=82.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.... ..+++++.+|+.++ ...++||+|++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~~ 152 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDVIWI 152 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC-----CceEEEEEcChhhcCCCCCCEEEEEE
Confidence 57899999999999999988754 5699999999999999999875321 24699999999887 44568999998
Q ss_pred cCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+.. ..++. ...+++++++.|+|||.+++..
T Consensus 153 ~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 153 QWV-----IGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp ESC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cch-----hhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 632 12222 2379999999999999998854
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.7e-13 Score=115.16 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=87.1
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.+.+..+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|++++.... ..++++++.+|+.+....++||+
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~D~ 184 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG----LIERVTIKVRDISEGFDEKDVDA 184 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT----CGGGEEEECCCGGGCCSCCSEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC----CCCCEEEEECCHHHcccCCccCE
Confidence 3456789999999999999999998 568899999999999999999864221 12479999999988744568999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++|... ..++++.+.+.|+|||.+++....
T Consensus 185 V~~~~~~---------~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 185 LFLDVPD---------PWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp EEECCSC---------GGGTHHHHHHHEEEEEEEEEEESS
T ss_pred EEECCcC---------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9996532 247899999999999999998743
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=116.17 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=80.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHH----CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c-cC
Q 035593 77 PPGPIGILGFGAGSAARLILDL----YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S-LK 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~----~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~-~~ 147 (269)
++.+|||||||+|..+..+++. .|+.+|++||+++++++.|+. . .++++++++|+.+. . ..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~-------~~~v~~~~gD~~~~~~l~~~~~ 150 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D-------MENITLHQGDCSDLTTFEHLRE 150 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G-------CTTEEEEECCSSCSGGGGGGSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c-------CCceEEEECcchhHHHHHhhcc
Confidence 5689999999999999999987 578999999999999988872 1 25799999999884 2 23
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh-hccCCcEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQ-CLRKGGRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~-~L~pgG~l~~~~ 190 (269)
.+||+|++|... ....++++.+.+ .|+|||++++..
T Consensus 151 ~~fD~I~~d~~~-------~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 151 MAHPLIFIDNAH-------ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SCSSEEEEESSC-------SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred CCCCEEEECCch-------HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 379999998652 134689999997 999999999864
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-13 Score=120.14 Aligned_cols=140 Identities=14% Similarity=0.024 Sum_probs=100.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||+|||+|.++..+++. +.+|++||+|+.+++.|++++... ..+++++.+|+.+. ...++||+|++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~------~~~v~~~~~D~~~~~~~~~~fD~Ii~ 304 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEAN------ALKAQALHSDVDEALTEEARFDIIVT 304 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHT------TCCCEEEECSTTTTSCTTCCEEEEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEcchhhccccCCCeEEEEE
Confidence 5779999999999999999984 679999999999999999987533 23489999999987 44579999999
Q ss_pred cCCCCCCCC-CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcCCCCce
Q 035593 156 DLFSKGSLL-SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDD 234 (269)
Q Consensus 156 d~~~~~~~~-~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~~~~n~ 234 (269)
+..-+.... ..-...++++.+++.|+|||.+++...... .....+++.|+ .+..+. ..+=.
T Consensus 305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l---------------~~~~~l~~~f~-~v~~l~--~~gF~ 366 (381)
T 3dmg_A 305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL---------------KYEPLLEEKFG-AFQTLK--VAEYK 366 (381)
T ss_dssp CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS---------------CHHHHHHHHHS-CCEEEE--ESSSE
T ss_pred CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC---------------ChHHHHHHhhc-cEEEEe--CCCEE
Confidence 754332111 011235899999999999999999775432 12355778897 455442 22334
Q ss_pred EEEEecCC
Q 035593 235 SLIALTGE 242 (269)
Q Consensus 235 v~~~~~~~ 242 (269)
|+-+.+.+
T Consensus 367 Vl~a~~~~ 374 (381)
T 3dmg_A 367 VLFAEKRG 374 (381)
T ss_dssp EEEEECC-
T ss_pred EEEEEEec
Confidence 45444443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=109.04 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=82.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.|++.+. .+++++.+|+.++...++||+|++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSSCCCCSCCSEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhhcCCCCCeEEEEE
Confidence 36789999999999999999984 7799999999999999999864 368999999998833389999998
Q ss_pred cCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
... ..++.. ..+++++++.|+|||.+++...
T Consensus 113 ~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 113 TYA-----FHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp ESC-----GGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred Ccc-----hhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 632 122222 2399999999999999998764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=120.63 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=89.6
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
|.+.+.....+.++++|||||||+|.++..++++ ...+|++||++ .+++.|++++.... ...+++++.+|+.++
T Consensus 51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~ 124 (376)
T 3r0q_C 51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANN----LDHIVEVIEGSVEDI 124 (376)
T ss_dssp HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTT----CTTTEEEEESCGGGC
T ss_pred HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcC----CCCeEEEEECchhhc
Confidence 4445544444567899999999999999999985 34499999999 99999999875332 135799999999988
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+++||+|+++..... ....-....+++.+.+.|+|||++++.
T Consensus 125 ~~~~~~D~Iv~~~~~~~-l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 125 SLPEKVDVIISEWMGYF-LLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CCSSCEEEEEECCCBTT-BTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred CcCCcceEEEEcChhhc-ccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 54489999998653221 111222467999999999999999764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=121.70 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=88.8
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
|.+.+.....+.++++|||||||+|.++..+++. +..+|++||+++ +++.|++++....+ ..+++++.+|+.++
T Consensus 54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~----~~~v~~~~~d~~~~ 127 (349)
T 3q7e_A 54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKL----DHVVTIIKGKVEEV 127 (349)
T ss_dssp HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC----TTTEEEEESCTTTC
T ss_pred HHHHHHhccccCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCC----CCcEEEEECcHHHc
Confidence 4444443333457889999999999999999985 566999999995 99999988753321 35799999999998
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...++||+|+++..... ....-....+++.+.+.|+|||+++..
T Consensus 128 ~~~~~~fD~Iis~~~~~~-l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 128 ELPVEKVDIIISEWMGYC-LFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CCSSSCEEEEEECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cCCCCceEEEEEcccccc-ccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 45689999998643221 112223468999999999999998754
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=114.59 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=83.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++... ..+++++.+|+.+....++||+|++
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~fD~v~~ 111 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER------NLKIEFLQGDVLEIAFKNEFDAVTM 111 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TCCCEEEESCGGGCCCCSCEEEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhc------CCceEEEECChhhcccCCCccEEEE
Confidence 45789999999999999999884 679999999999999999986422 2469999999998754578999996
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
...... ....-....+++.+++.|+|||.+++....
T Consensus 112 ~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 112 FFSTIM-YFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp CSSGGG-GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCchh-cCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 421110 101011358999999999999999987643
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-14 Score=125.90 Aligned_cols=121 Identities=19% Similarity=0.212 Sum_probs=91.6
Q ss_pred cchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 62 TNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 62 ~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
...|.++|.....+.+.+.|||||||+|.++..+++. ...+|++||.++ +++.|++....+.+ ..+++++.+|.
T Consensus 68 t~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~----~~~i~~i~~~~ 141 (376)
T 4hc4_A 68 TDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGL----EDRVHVLPGPV 141 (376)
T ss_dssp HHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTC----TTTEEEEESCT
T ss_pred HHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCC----CceEEEEeeee
Confidence 3456666654333446889999999999999988873 345899999997 88999987654432 46899999999
Q ss_pred cccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 142 LKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 142 ~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.++..++++|+|++..... ....+-....++....+.|+|||+++-+
T Consensus 142 ~~~~lpe~~DvivsE~~~~-~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 142 ETVELPEQVDAIVSEWMGY-GLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTCCCSSCEEEEECCCCBT-TBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred eeecCCccccEEEeecccc-cccccchhhhHHHHHHhhCCCCceECCc
Confidence 9997778999999866543 1222333568888889999999988743
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=110.50 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||||||+|.++..+++ .+..+|+++|+++.+++.|++++.... ..+++++.+|+.++. .++||+|+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~-~~~fD~i~ 130 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNG-----IYDIALQKTSLLADV-DGKFDLIV 130 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTT-----CCCCEEEESSTTTTC-CSCEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEeccccccC-CCCceEEE
Confidence 34678999999999999999887 466799999999999999999875332 223999999998763 47899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++.... + ...+++.+++.|+|||.+++....
T Consensus 131 ~~~~~~-----~--~~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 131 ANILAE-----I--LLDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp EESCHH-----H--HHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred ECCcHH-----H--HHHHHHHHHHhcCCCCEEEEEecC
Confidence 874321 1 367899999999999999986543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=115.44 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=86.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+..+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++.+.... ..++++++.+|+.++. ++||+|
T Consensus 87 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~--~~fD~v 159 (318)
T 2fk8_A 87 DLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID----TNRSRQVLLQGWEDFA--EPVDRI 159 (318)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCGGGCC--CCCSEE
T ss_pred CCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChHHCC--CCcCEE
Confidence 35578899999999999999999865 6799999999999999999864221 1357999999997763 789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++...-. ..+. -...++++++.+.|+|||.+++..+..
T Consensus 160 ~~~~~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 160 VSIEAFE-HFGH-ENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp EEESCGG-GTCG-GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred EEeChHH-hcCH-HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 9752111 0110 124689999999999999999877654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-13 Score=108.92 Aligned_cols=106 Identities=18% Similarity=0.273 Sum_probs=82.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||+|..+..+++. +.+++++|+++.+++.|++++.... .++++++.+|+.+....++||+|++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~D~v~~ 103 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIEN-----LDNLHTRVVDLNNLTFDRQYDFILS 103 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECCGGGCCCCCCEEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCC-----CCCcEEEEcchhhCCCCCCceEEEE
Confidence 46789999999999999999984 6799999999999999999864322 2469999999988733788999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...-. ... .-....+++.+++.|+|||.+++..
T Consensus 104 ~~~l~-~~~-~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 104 TVVLM-FLE-AKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp ESCGG-GSC-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cchhh-hCC-HHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 63211 111 1124689999999999999976643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-13 Score=115.15 Aligned_cols=109 Identities=21% Similarity=0.311 Sum_probs=83.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|.++..+++. .+++++|+++.+++.|++++... ..+++++.+|+.+....++||+|+
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~fD~v~ 101 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET------NRHVDFWVQDMRELELPEPVDAIT 101 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT------TCCCEEEECCGGGCCCSSCEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc------CCceEEEEcChhhcCCCCCcCEEE
Confidence 345789999999999999998874 79999999999999999986422 257999999998874457899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...........-....+++.+++.|+|||.+++.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 102 ILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 74211001111112357899999999999999998754
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-13 Score=111.69 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=85.0
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc------c
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS------L 146 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~------~ 146 (269)
+.+.+..+|||||||+|..+..+++..+ +|+++|+|+.+++.|++++. ..+++++++|+.+.. .
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~~~ 121 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT--------AANISYRLLDGLVPEQAAQIHS 121 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC--------CTTEEEEECCTTCHHHHHHHHH
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc--------ccCceEEECccccccccccccc
Confidence 3456788999999999999999998765 89999999999999999873 347999999998861 1
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...||+|++...-+. . +.-....+++++++.|+|||.+++..+..
T Consensus 122 ~~~~d~v~~~~~~~~-~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 122 EIGDANIYMRTGFHH-I-PVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp HHCSCEEEEESSSTT-S-CGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred ccCccEEEEcchhhc-C-CHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 235999998643321 1 11123689999999999999877766543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=110.23 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=84.9
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.+..+|||||||+|.++..+++.. .+|+++|+++.+++.|++++.... -++++++.+|+..+ ...++||+
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~ 90 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG-----VENVRFQQGTAESLPFPDDSFDI 90 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEECBTTBCCSCTTCEEE
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-----CCCeEEEecccccCCCCCCcEEE
Confidence 34578899999999999999998854 499999999999999998864321 24799999999887 45678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++..... .. -....+++++++.|+|||.+++...
T Consensus 91 v~~~~~l~-~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 91 ITCRYAAH-HF---SDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEEESCGG-GC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCchh-hc---cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99763211 11 1246899999999999999988544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=105.18 Aligned_cols=121 Identities=15% Similarity=0.120 Sum_probs=93.1
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++.... ..++++++.+|+.+. ...++||+
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~D~ 103 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG----LGDNVTLMEGDAPEALCKIPDIDI 103 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT----CCTTEEEEESCHHHHHTTSCCEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC----CCcceEEEecCHHHhcccCCCCCE
Confidence 34578899999999999999999854 899999999999999999864322 125799999998874 33358999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-h
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-F 219 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F 219 (269)
|+++.... ...++++.+.+.|+|||.+++..... .....+.+.+++. |
T Consensus 104 v~~~~~~~-------~~~~~l~~~~~~l~~gG~l~~~~~~~------------~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 104 AVVGGSGG-------ELQEILRIIKDKLKPGGRIIVTAILL------------ETKFEAMECLRDLGF 152 (192)
T ss_dssp EEESCCTT-------CHHHHHHHHHHTEEEEEEEEEEECBH------------HHHHHHHHHHHHTTC
T ss_pred EEECCchH-------HHHHHHHHHHHhcCCCcEEEEEecCc------------chHHHHHHHHHHCCC
Confidence 99864321 14789999999999999999987543 1244556666655 5
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-13 Score=109.67 Aligned_cols=109 Identities=24% Similarity=0.151 Sum_probs=85.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~ 149 (269)
..++.+|||+|||+|.++..+++ .+..+|+++|+++.+++.|++++.... ..++++++.+|+.++ . ..++
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~ 116 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITK----EPEKFEVRKMDANRALEQFYEEKLQ 116 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhC----CCcceEEEECcHHHHHHHHHhcCCC
Confidence 35678999999999999998887 456799999999999999999875332 124799999999886 2 2678
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHH--HhhccCCcEEEEEecCC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKL--RQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~--~~~L~pgG~l~~~~~~~ 193 (269)
||+|+++..-. .....++++.+ .+.|+|||++++.....
T Consensus 117 fD~i~~~~~~~-----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 117 FDLVLLDPPYA-----KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EEEEEECCCGG-----GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCEEEECCCCC-----chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 99999874311 11245777777 88899999999877554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=112.47 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=82.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..++.+|||+|||+|..+..++.. ++.+|+++|+++.+++.|++++... ..+++++.+|+.+. ...++||+|
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v 93 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSREN------NFKLNISKGDIRKLPFKDESMSFV 93 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHH------TCCCCEEECCTTSCCSCTTCEEEE
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEECchhhCCCCCCceeEE
Confidence 446789999999999985444433 5789999999999999999886432 25689999999887 456789999
Q ss_pred EEcCCCCCCCCCCC---CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSEL---EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l---~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++... ..++ ....+++++++.|+|||.+++..++.
T Consensus 94 ~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 94 YSYGT-----IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp EECSC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEcCh-----HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 97421 1122 23689999999999999999987654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-13 Score=115.70 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=86.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++.... ..++++++.+|+.+. ..+++||+
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~ 153 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG----LADNITVKYGSFLEIPCEDNSYDF 153 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT----CTTTEEEEECCTTSCSSCTTCEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEEcCcccCCCCCCCEeE
Confidence 45678899999999999999999865 5699999999999999998864221 135799999999887 45678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++...-. ..+ ....+++++++.|||||.+++...
T Consensus 154 v~~~~~l~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 154 IWSQDAFL-HSP---DKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp EEEESCGG-GCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecchhh-hcC---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99752211 111 147899999999999999988754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=119.60 Aligned_cols=112 Identities=24% Similarity=0.326 Sum_probs=85.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++...... ...+++++++|+.++...++||+|++.
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~fD~v~~~ 157 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPAD--VRDRCTLVQGDMSAFALDKRFGTVVIS 157 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHH--HHTTEEEEECBTTBCCCSCCEEEEEEC
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccc--cccceEEEeCchhcCCcCCCcCEEEEC
Confidence 3569999999999999999984 679999999999999999987422100 015799999999988557899999863
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.... ...+.-....+++++++.|+|||.|++..+..
T Consensus 158 ~~~~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 158 SGSI-NELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp HHHH-TTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred Cccc-ccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 1100 01110012689999999999999999998765
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-13 Score=118.83 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=86.8
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
|.+.+.....+.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++....+ .++++++.+|+.++
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~ 125 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKL----EDTITLIKGKIEEV 125 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTTTS
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCC----CCcEEEEEeeHHHh
Confidence 4455544434567889999999999999999985 456999999997 99999988743321 36899999999988
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
...++||+|+++.... ..........+++.+.+.|+|||+++
T Consensus 126 ~~~~~~~D~Ivs~~~~~-~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 126 HLPVEKVDVIISEWMGY-FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CCSCSCEEEEEECCCBT-TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCCcEEEEEEcCchh-hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 4457999999864211 11111123579999999999999987
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=110.87 Aligned_cols=104 Identities=14% Similarity=0.017 Sum_probs=84.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.. .++++++.+|+.+. ...++||+|
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v 162 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDLI 162 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEccHHHCCCCCCCeEEE
Confidence 3467899999999999999998864 56899999999999999998752 25799999999887 456789999
Q ss_pred EEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++... ..++. ...+++++++.|+|||.+++...
T Consensus 163 ~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 163 VIQWT-----AIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEESC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcch-----hhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 97432 12221 36899999999999999988653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=112.67 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCcc-ccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALE-KLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~-~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
.+.+..+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|++++... .. ..++++++.+|+.+. ...+.|
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~---~~~~v~~~~~d~~~~~~~~~~~ 172 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---PPDNWRLVVSDLADSELPDGSV 172 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---CCTTEEEECSCGGGCCCCTTCE
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC---CCCcEEEEECchHhcCCCCCce
Confidence 3557889999999999999999985 46789999999999999999986321 00 025799999999887 446789
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
|+|+++... ..++++.+.+.|+|||.+++..... .....+...+++
T Consensus 173 D~v~~~~~~---------~~~~l~~~~~~L~pgG~l~~~~~~~------------~~~~~~~~~l~~ 218 (280)
T 1i9g_A 173 DRAVLDMLA---------PWEVLDAVSRLLVAGGVLMVYVATV------------TQLSRIVEALRA 218 (280)
T ss_dssp EEEEEESSC---------GGGGHHHHHHHEEEEEEEEEEESSH------------HHHHHHHHHHHH
T ss_pred eEEEECCcC---------HHHHHHHHHHhCCCCCEEEEEeCCH------------HHHHHHHHHHHh
Confidence 999997542 2478999999999999999988542 234566666765
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=112.05 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=84.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++. . ..++++++.+|+.+. ...++||+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-~-----~~~~~~~~~~d~~~~~~~~~~fD~ 107 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIA-G-----VDRKVQVVQADARAIPLPDESVHG 107 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTT-T-----SCTTEEEEESCTTSCCSCTTCEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh-c-----cCCceEEEEcccccCCCCCCCeeE
Confidence 4567889999999999999999884 6799999999999999999872 1 146899999999887 45678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|++...-+ ..+ ....+++++++.|+|||.+++.
T Consensus 108 v~~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 108 VIVVHLWH-LVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEEESCGG-GCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCchh-hcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 99753211 111 2468999999999999999887
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.3e-13 Score=115.10 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=85.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++.+.... ..++++++.+|+.+. ...++||+|+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD~v~ 141 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKG----VSDNMQFIHCAAQDVASHLETPVDLIL 141 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-C----CGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEEcCHHHhhhhcCCCceEEE
Confidence 3679999999999999999984 7799999999999999999874322 125899999999987 3668999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...-. .. -....+++++++.|+|||.+++..++
T Consensus 142 ~~~~l~-~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 142 FHAVLE-WV---ADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EESCGG-GC---SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ECchhh-cc---cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 853211 11 12368999999999999999998754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=110.04 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=84.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..++.+|||||||+|..+..+++. ...+++++|+++.+++.|++.+. ..+++++.+|+.+. ...++||+|
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGP--------DTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC--------SSSEEEEECCGGGCCCCTTCEEEE
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcc--------cCCceEEEcChhhccCCCCCceEE
Confidence 346789999999999999999885 22399999999999999999864 24699999999887 456789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...-. .. -....+++.+++.|+|||.+++....
T Consensus 112 ~~~~~l~-~~---~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 112 YSSLALH-YV---EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEESCGG-GC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEecccc-cc---chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 9753211 11 12468999999999999999987643
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-13 Score=111.79 Aligned_cols=108 Identities=16% Similarity=0.025 Sum_probs=82.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cCCC-eeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LKDG-FSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~~~-yD~ 152 (269)
++.+|||+|||+|.++..++.. ...+|++||+|+.+++.|++++..... ..++++++.+|+.++ . ..++ ||+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD~ 128 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKC---SSEQAEVINQSSLDFLKQPQNQPHFDV 128 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTC---CTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCC---CccceEEEECCHHHHHHhhccCCCCCE
Confidence 5789999999999999987764 346999999999999999998743220 015799999999886 2 2568 999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHH--HhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKL--RQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~--~~~L~pgG~l~~~~~~~ 193 (269)
|++|..-. .-...++++.+ .+.|+|||++++.....
T Consensus 129 I~~~~~~~-----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 129 VFLDPPFH-----FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEECCCSS-----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EEECCCCC-----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 99875411 11135788888 56799999999877543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-12 Score=102.78 Aligned_cols=116 Identities=14% Similarity=0.028 Sum_probs=91.1
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.++.+|||+|||+|.++..+++ +..+++++|+++.+++.|++++.... -++++++.+|+.+....++||+|
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~D~i 104 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN-----IKNCQIIKGRAEDVLDKLEFNKA 104 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT-----CCSEEEEESCHHHHGGGCCCSEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEECCccccccCCCCcEE
Confidence 345678999999999999999988 78899999999999999999874322 25799999999875344789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
+++.. ....++++.+++. |||.+++..... .....+.+.+++.
T Consensus 105 ~~~~~--------~~~~~~l~~~~~~--~gG~l~~~~~~~------------~~~~~~~~~l~~~ 147 (183)
T 2yxd_A 105 FIGGT--------KNIEKIIEILDKK--KINHIVANTIVL------------ENAAKIINEFESR 147 (183)
T ss_dssp EECSC--------SCHHHHHHHHHHT--TCCEEEEEESCH------------HHHHHHHHHHHHT
T ss_pred EECCc--------ccHHHHHHHHhhC--CCCEEEEEeccc------------ccHHHHHHHHHHc
Confidence 98654 1247899999888 999999988543 1244556666655
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=108.19 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=82.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD 151 (269)
.+.++.+|||||||+|.++..+++.. |..+|+++|+++.+++.|++++.... -++++++.+|+... ...++||
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD 148 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-----YDNVIVIVGDGTLGYEPLAPYD 148 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCCCCCee
Confidence 45578899999999999999999876 55899999999999999999874221 24699999998655 4467899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|+++...+ ++ .+.+.+.|+|||.+++.+..
T Consensus 149 ~v~~~~~~~-----~~-----~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 149 RIYTTAAGP-----KI-----PEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp EEEESSBBS-----SC-----CHHHHHTEEEEEEEEEEESS
T ss_pred EEEECCchH-----HH-----HHHHHHHcCCCcEEEEEECC
Confidence 999864322 11 15889999999999998854
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-12 Score=108.85 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=85.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-cCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS-LKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~-~~~~yD~I 153 (269)
+.+..+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++.... .+++++++.+|+.+.. ..+.||+|
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~D~v 162 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFN----LGKNVKFFNVDFKDAEVPEGIFHAA 162 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTT----CCTTEEEECSCTTTSCCCTTCBSEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC----CCCcEEEEEcChhhcccCCCcccEE
Confidence 456789999999999999999987 7799999999999999999864221 1357999999998874 66789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+++..+ ..++++.+.+.|+|||.+++....
T Consensus 163 ~~~~~~---------~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 163 FVDVRE---------PWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp EECSSC---------GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred EECCcC---------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 986432 247899999999999999998853
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=117.64 Aligned_cols=123 Identities=16% Similarity=0.020 Sum_probs=92.5
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
....|..+..+.+..+|||+|||+|.++..++... |+.+|+++|+|+.+++.|++++...+ -++++++++|+.+
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-----~~~i~~~~~D~~~ 265 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-----LSWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-----CTTCEEEECCGGG
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-----CCceEEEeCChhh
Confidence 33444433345578899999999999999999876 78999999999999999999875332 1279999999999
Q ss_pred c-ccCCCeeEEEEcCCCCCCCCCCC----CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 144 A-SLKDGFSGILVDLFSKGSLLSEL----EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 144 ~-~~~~~yD~I~~d~~~~~~~~~~l----~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+ ...+.||+|++|.+-........ ...++++.+++.|+|||.+++....
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 8 44567899999864332111110 0157899999999999999997643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-13 Score=106.38 Aligned_cols=103 Identities=12% Similarity=-0.033 Sum_probs=81.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---cCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S---LKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~---~~~~yD 151 (269)
++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++.... .+++++.+|+.++ . ..++||
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTG------LGARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHT------CCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcC------CceEEEeccHHHHHHhhhccCCceE
Confidence 67899999999999999999854 349999999999999999875332 2799999999875 1 134899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHH--hhccCCcEEEEEecCC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLR--QCLRKGGRIMVNVGGS 193 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~--~~L~pgG~l~~~~~~~ 193 (269)
+|+++..-. -...++++.+. +.|+|||++++.....
T Consensus 113 ~i~~~~~~~------~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 113 VAFMAPPYA------MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp EEEECCCTT------SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred EEEECCCCc------hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 999975321 12356777777 9999999999988654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-13 Score=109.53 Aligned_cols=105 Identities=19% Similarity=0.007 Sum_probs=81.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
+..+|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++.... -++++++++|+.++ ...++||+|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~D~~~~~~~~~~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK-----AGNARVVNSNAMSFLAQKGTPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHHHhhcCCCCCEEE
Confidence 57899999999999999877642 3599999999999999999875332 24799999999886 3456899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHh--hccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQ--CLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~--~L~pgG~l~~~~~~ 192 (269)
+|..-. .-...++++.+.+ .|+|||++++....
T Consensus 128 ~~~p~~-----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 128 VDPPFR-----RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ECCSSS-----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred ECCCCC-----CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 975411 1124578888876 49999999987754
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=112.64 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=89.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~ 148 (269)
..+..+|||+|||+|..+..+++..++ .+|+++|+++.+++.+++++.... -++++++.+|+.++ . ..+
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~ 155 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG-----VLNTIIINADMRKYKDYLLKNEI 155 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCHHHHHHHHHHTTC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC-----CCcEEEEeCChHhcchhhhhccc
Confidence 346789999999999999999988776 899999999999999998864322 24799999999887 2 267
Q ss_pred CeeEEEEcCCCCC-CCCC-------------CCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 149 GFSGILVDLFSKG-SLLS-------------ELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 149 ~yD~I~~d~~~~~-~~~~-------------~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+||+|++|+.-.. +... .-...++++.+.+.|||||.+++...+..
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 8999999964321 1100 01236899999999999999999876653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.2e-13 Score=111.27 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+.+..+|||+|||+|.++..+++.. |+.+|+++|+++.+++.+.+.... .++++++.+|+.+. ...++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-------~~~v~~~~~d~~~~~~~~~~~~~ 147 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-------RTNIIPVIEDARHPHKYRMLIAM 147 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-------CTTEEEECSCTTCGGGGGGGCCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-------cCCeEEEEcccCChhhhcccCCc
Confidence 4567899999999999999999875 678999999999887776665432 24799999999874 24578
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||+|++|..... ....+++++.+.|+|||++++.+.
T Consensus 148 ~D~V~~~~~~~~------~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 148 VDVIFADVAQPD------QTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp EEEEEECCCCTT------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEcCCCcc------HHHHHHHHHHHHcCCCeEEEEEEc
Confidence 999999754211 124568889999999999999654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-12 Score=110.12 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=84.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCe---eEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGF---SGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~y---D~I 153 (269)
++.+|||||||+|.++..+++. |+.+|+++|+|+.+++.|+++..... ...+++++++|+.+... ++| |+|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~----l~~~v~~~~~D~~~~~~-~~f~~~D~I 196 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG----VSDRFFVRKGEFLEPFK-EKFASIEMI 196 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT----CTTSEEEEESSTTGGGG-GGTTTCCEE
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECcchhhcc-cccCCCCEE
Confidence 4679999999999999999998 89999999999999999999874322 13469999999987532 478 999
Q ss_pred EEcCCCCCC---CCC---C---------CCcHHHHHHHH-hhccCCcEEEEEec
Q 035593 154 LVDLFSKGS---LLS---E---------LEDPNTWEKLR-QCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~---~~~---~---------l~~~e~~~~~~-~~L~pgG~l~~~~~ 191 (269)
+++.+-... ..+ + ....++++.+. +.|+|||.+++.+.
T Consensus 197 vsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 197 LSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp EECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred EEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 997421110 000 0 01137999999 99999999998664
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=107.12 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=85.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.++.+|||||||+|.++..+++..+. +|+++|+++.+++.|++++.. .++++++.+|+.+. ...++||+|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~~~~~~~~fD~v 111 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFPSASFDVV 111 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTSCCSCSSCEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhcCCCCCCcccEE
Confidence 457889999999999999999985333 899999999999999998752 25799999999887 456789999
Q ss_pred EEcCCCC-----CCCCCC------CCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSK-----GSLLSE------LEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~-----~~~~~~------l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++...-. ...+.. -....+++++.+.|+|||.+++..++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 112 LEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp EEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 9742110 000000 012689999999999999999988654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.4e-13 Score=113.10 Aligned_cols=103 Identities=20% Similarity=0.176 Sum_probs=82.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||+|||+|.++..+++.. .+|+++|+||.+++.|++++..+. -. ++++.+|+.+....++||+|+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~~~-----~~-v~~~~~d~~~~~~~~~fD~Vv 189 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNG-----VR-PRFLEGSLEAALPFGPFDLLV 189 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTT-----CC-CEEEESCHHHHGGGCCEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECChhhcCcCCCCCEEE
Confidence 3568899999999999999988843 399999999999999999875432 12 899999987753456899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++.... . ..++++.+.+.|+|||.+++....
T Consensus 190 ~n~~~~-----~--~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 190 ANLYAE-----L--HAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp EECCHH-----H--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCcHH-----H--HHHHHHHHHHHcCCCCEEEEEeec
Confidence 864321 1 368999999999999999986543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-13 Score=114.65 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=80.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++. +++++.+|+.++...++||+|++.
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~~~~fD~v~~~ 117 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP----------DAVLHHGDMRDFSLGRRFSAVTCM 117 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTCCCSCCEEEEEEC
T ss_pred CCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC----------CCEEEECChHHCCccCCcCEEEEc
Confidence 5689999999999999999884 5689999999999999999752 589999999988557899999974
Q ss_pred CCCCCCCCCCC----CcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSEL----EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l----~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.. ...++ ....+++++++.|+|||.+++..
T Consensus 118 ~~----~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 118 FS----SIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp TT----GGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred Cc----hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 21 11222 23478999999999999999964
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=112.65 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=84.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||||||+|.++..+++ ++.+|+++|+++.+++.|++.+ ++++++.+|+..+...++||+|+
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTCCCSSCEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhCCcCCCcCEEE
Confidence 34678999999999999999998 7889999999999999999875 25789999998874467999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+...-. .. .....+++++++.|+|||.+++..+..
T Consensus 123 ~~~~l~-~~---~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 123 SNAMLH-WV---KEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EESCGG-GC---SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred Ecchhh-hC---cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 753211 01 124689999999999999999977654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=115.35 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=90.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCc-------cccccCCCCcEEEEEcccccc-
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFAL-------EKLEKSYPDRLFVYVGNALKA- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~-------~~~~~~~~~rv~~~~~D~~~~- 144 (269)
.+.+..+|||+|||+|.++..+++. .|..+|+++|+++.+++.|++++.. +... ....+++++.+|+.+.
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~-~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE-EWPDNVDFIHKDISGAT 180 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS-CCCCCEEEEESCTTCCC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc-ccCCceEEEECChHHcc
Confidence 3557889999999999999999987 4668999999999999999998641 1100 0125799999999886
Q ss_pred --ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 145 --SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
...++||+|++|...+ ..+++.+.+.|+|||.+++..... ......++.+++.
T Consensus 181 ~~~~~~~fD~V~~~~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~------------~~~~~~~~~l~~~ 235 (336)
T 2b25_A 181 EDIKSLTFDAVALDMLNP---------HVTLPVFYPHLKHGGVCAVYVVNI------------TQVIELLDGIRTC 235 (336)
T ss_dssp -------EEEEEECSSST---------TTTHHHHGGGEEEEEEEEEEESSH------------HHHHHHHHHHHHH
T ss_pred cccCCCCeeEEEECCCCH---------HHHHHHHHHhcCCCcEEEEEeCCH------------HHHHHHHHHHHhc
Confidence 2345799999976433 237899999999999999877532 2355566666653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-13 Score=111.58 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||+|..+..+++..+ +++++|+++.+++.|++.+ ++++++.+|+.++...++||+|++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~D~v~~ 106 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL----------PDATLHQGDMRDFRLGRKFSAVVS 106 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC----------TTCEEEECCTTTCCCSSCEEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC----------CCCEEEECCHHHcccCCCCcEEEE
Confidence 4678999999999999999998754 8999999999999999875 258999999988744778999995
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
....-......-....+++.+++.|+|||.+++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2110000111011258999999999999999997654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-12 Score=112.86 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=89.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
..+..+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++.... -++++++++|+..+ ...++||+
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCSEEEESSCGGGGGGGCCCEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCeEEEEECChhhcccccccCCE
Confidence 45678999999999999999998875 5799999999999999999874322 24699999999987 44668999
Q ss_pred EEEcCCCC-CCCC---CCC---C-----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 153 ILVDLFSK-GSLL---SEL---E-----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 153 I~~d~~~~-~~~~---~~l---~-----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|++|+.-. .++. +.. . ..++++.+.+.|||||.+++...+..
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 99996532 1111 100 0 14899999999999999999776543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=115.11 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=83.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD 151 (269)
.+.++.+|||||||+|.++..+++..+ +.+|+++|+++++++.|++++.... -++++++.+|+.+. ...++||
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD 146 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGDGYYGVPEFSPYD 146 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCeEEEECChhhccccCCCeE
Confidence 456788999999999999999998766 4789999999999999999874322 23599999999886 4457899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|+++.... ++. +.+.+.|+|||++++.+..
T Consensus 147 ~Iv~~~~~~-----~~~-----~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 147 VIFVTVGVD-----EVP-----ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEECSBBS-----CCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred EEEEcCCHH-----HHH-----HHHHHhcCCCcEEEEEECC
Confidence 999875332 111 5788899999999998753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-13 Score=115.72 Aligned_cols=105 Identities=19% Similarity=0.107 Sum_probs=88.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||+|||+|.++..++++ +..+|+++|+||..++.++++...+.. ..+++++.+|++++...+.||.|+
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v----~~~v~~~~~D~~~~~~~~~~D~Vi 197 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPGENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCCCSCEEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCcHHHhccccCCCEEE
Confidence 457899999999999999999885 567999999999999999999866542 468999999999997678999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++.+.. ..+|+..+.+.|++||++.+....
T Consensus 198 ~~~p~~--------~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 198 MGYVVR--------THEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp ECCCSS--------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCCCc--------HHHHHHHHHHHcCCCCEEEEEeee
Confidence 875422 468999999999999999876543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=113.58 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=83.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++.... .+++++.+|+.+....++||+|++.
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~fD~i~~~ 191 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKEN------LNISTALYDINAANIQENYDFIVST 191 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCGGGCCCCSCEEEEEEC
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcC------CceEEEEeccccccccCCccEEEEc
Confidence 6789999999999999999984 6799999999999999999875332 3799999999987547899999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..-. .. +.-....+++.+++.|+|||.+++...
T Consensus 192 ~~~~-~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 192 VVFM-FL-NRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp SSGG-GS-CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cchh-hC-CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4221 01 111135899999999999999776543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.9e-13 Score=109.34 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=82.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.|+++++ ++++.+|+......++||+|+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~d~~~~~~~~~fD~v~ 107 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLG-----------RPVRTMLFHQLDAIDAYDAVW 107 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHT-----------SCCEECCGGGCCCCSCEEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcC-----------CceEEeeeccCCCCCcEEEEE
Confidence 456889999999999999999984 6799999999999999999862 566778888776678999999
Q ss_pred EcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+.. ...++. ...+++++++.|+|||.+++.....
T Consensus 108 ~~~-----~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 108 AHA-----CLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp ECS-----CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ecC-----chhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 742 122222 3589999999999999999986543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=108.19 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=83.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
+. +|||||||+|..+..+++. +.+++++|+++.+++.|++++... ..+++++.+|+.+. ...++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEK------GVKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHH------TCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhc------CCceEEEEcChhhcCCCcCCccEEEE
Confidence 45 9999999999999999874 679999999999999999987432 23799999999887 45678999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.. .. . +.-....+++.+++.|+|||.+++.....
T Consensus 101 ~~-~~--~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 101 IF-CH--L-PSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp EC-CC--C-CHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred Eh-hc--C-CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 42 11 1 11123689999999999999999987654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.2e-13 Score=114.61 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=86.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-cCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-LKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~yD~ 152 (269)
+.++.+|||||||+|..+..+++. +..+++++|+++.+++.|++++.... ...+++++.+|+.+. . ..++||+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD~ 136 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYGRHMDLGKEFDV 136 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCccEEEEECCccccccCCCCCcCE
Confidence 357889999999999999998875 55699999999999999999874321 125799999999887 3 5678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++...-+......-....+++.+++.|+|||.+++...+
T Consensus 137 v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 137 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9976321100011111358999999999999999998854
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=110.77 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCC
Q 035593 72 LPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKD 148 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~ 148 (269)
++.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.|+++ ++++.+|+.++ ...+
T Consensus 36 l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~~~~~~~ 100 (240)
T 3dli_A 36 IPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYLKSLPDK 100 (240)
T ss_dssp GGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHHHTSCTT
T ss_pred HhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-------------cceeeccHHHHhhhcCCC
Confidence 334557799999999999999999885 66899999999999998864 57778888875 2567
Q ss_pred CeeEEEEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEecCC
Q 035593 149 GFSGILVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+||+|++... ..++. ...+++++++.|||||.+++.....
T Consensus 101 ~fD~i~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 101 YLDGVMISHF-----VEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp CBSEEEEESC-----GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred CeeEEEECCc-----hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 8999997422 12221 2689999999999999999987654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=116.88 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=88.2
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
.|.+.+.......++.+|||||||+|.++..+++. +..+|++||+++ +++.|++.+.... ..++++++.+|+.+
T Consensus 37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~----l~~~v~~~~~d~~~ 110 (348)
T 2y1w_A 37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEE 110 (348)
T ss_dssp HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcC----CCCcEEEEEcchhh
Confidence 35555544434457889999999999999999884 567999999997 8899988764322 13689999999998
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+..+++||+|++...... .. .-...+.+..+++.|+|||++++..
T Consensus 111 ~~~~~~~D~Ivs~~~~~~-~~-~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 111 VSLPEQVDIIISEPMGYM-LF-NERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCCSSCEEEEEECCCBTT-BT-TTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCCCCceeEEEEeCchhc-CC-hHHHHHHHHHHHhhcCCCeEEEEec
Confidence 754578999998643211 11 1113578888999999999998654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=109.36 Aligned_cols=107 Identities=12% Similarity=-0.008 Sum_probs=86.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||||+|.++..+++..|..+|+++|+||.+++.|+++..... ...+++++.+|+.+. ....+||+|
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g----l~~~i~~~~~d~l~~l~~~~~~D~I 88 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG----LKEKIQVRLANGLAAFEETDQVSVI 88 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEECchhhhcccCcCCCEE
Confidence 446779999999999999999997778899999999999999999875433 135899999999765 333479999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++..... . ...+++..+.+.|+++|.++++-.
T Consensus 89 viaG~Gg-----~-~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 89 TIAGMGG-----R-LIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp EEEEECH-----H-HHHHHHHHTGGGCTTCCEEEEEES
T ss_pred EEcCCCh-----H-HHHHHHHHHHHHhCCCCEEEEECC
Confidence 8642211 1 136899999999999999999775
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-12 Score=101.59 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|.++..+++.. .+++++|+++.+++.|+++. ++++++.+| .. ...++||+|+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~----------~~v~~~~~d-~~-~~~~~~D~v~ 80 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKF----------DSVITLSDP-KE-IPDNSVDFIL 80 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHC----------TTSEEESSG-GG-SCTTCEEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhC----------CCcEEEeCC-CC-CCCCceEEEE
Confidence 3467799999999999999999854 39999999999999999982 368999999 22 4567899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+...-.. . -....+++++++.|+|||.+++..+..
T Consensus 81 ~~~~l~~-~---~~~~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 81 FANSFHD-M---DDKQHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp EESCSTT-C---SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred Eccchhc-c---cCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 7532221 1 124689999999999999999876654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=109.42 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=83.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+.+..+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...........+++++.+|+... ....+||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 5678899999999999999999875 457999999999999999987642110000024799999999865 44678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+++.... .+++.+.+.|+|||++++.+..
T Consensus 155 i~~~~~~~----------~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAP----------VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBS----------SCCHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchH----------HHHHHHHHhcCCCcEEEEEEec
Confidence 99875421 2346889999999999998754
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=115.54 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=85.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||+|.++..+++..|..+|+++|+++.+++.|++++... ...++++.+|+..+. .++||+|++
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~------~~~~~~~~~d~~~~~-~~~fD~Iv~ 267 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN------GVEGEVFASNVFSEV-KGRFDMIIS 267 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT------TCCCEEEECSTTTTC-CSCEEEEEE
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCEEEEccccccc-cCCeeEEEE
Confidence 3567999999999999999999888889999999999999999987432 234678899987754 568999998
Q ss_pred cCCCCCCCC-CCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLL-SELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~-~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+..-+.... ..-...+++++++++|+|||.+++....
T Consensus 268 ~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 268 NPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 643221110 0011368999999999999999886643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-13 Score=116.30 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc----cCCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----LKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----~~~~yD 151 (269)
.++.+|||||||+|..+..+++. +.+|+++|+++.+++.|+++...... .....++.+..+|+..+. ..++||
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRK-EPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTT-SHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhccc-ccccceeeEeecChhhCccccccCCCeE
Confidence 35789999999999999999984 56999999999999999886411000 000246899999988763 567999
Q ss_pred EEEEc--CCCCCCCCC----CCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVD--LFSKGSLLS----ELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d--~~~~~~~~~----~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|++. ...+ .+. .-....++++++++|+|||++++...+
T Consensus 133 ~V~~~g~~l~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAH--LPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGG--SCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEcChHHhh--cCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99973 2211 111 011368999999999999999998754
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=106.73 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=80.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
++.+|||||||+|.++..+++. +.+|+++|+++.+++.|+++. +++++.+|+.+. ....+||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAG-----------AGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTC-----------SSCEEECCHHHHHTTCSCCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhc-----------ccccchhhHHhhcccccccCCCcc
Confidence 5789999999999999999884 679999999999999999871 357778887765 3445699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+|++...-. +.....+++.+++.|+|||.+++....+
T Consensus 119 ~v~~~~~l~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 119 LICANFALL-----HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp EEEEESCCC-----SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEECchhh-----hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 999864322 2335799999999999999999987644
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=116.30 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=86.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCcccc---ccCCCCcEEEEEcccccc------
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKL---EKSYPDRLFVYVGNALKA------ 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~---~~~~~~rv~~~~~D~~~~------ 144 (269)
+.++.+|||||||+|.++..+++.+ ++.+|+++|+++.+++.|++++..... +....++++++.+|+.+.
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3467899999999999999999876 688999999999999999988631100 000136899999999875
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...++||+|++...-.. . -....+++++++.|||||.+++...
T Consensus 161 ~~~~~~fD~V~~~~~l~~-~---~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNL-S---TNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCCTTCEEEEEEESCGGG-C---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhc-C---CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 23568999998643221 1 1246899999999999999998643
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-12 Score=103.39 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.++.+|||||||+|.++..+++. +.+++++|+++.+++.|++++. +++++.+|+.+. ...++||+|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~----------~~~~~~~d~~~~~~~~~~~D~i 111 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP----------EARWVVGDLSVDQISETDFDLI 111 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTSCCCCCCEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC----------CCcEEEcccccCCCCCCceeEE
Confidence 346889999999999999999984 6799999999999999998752 489999999887 445789999
Q ss_pred EEcCCCCCCCCCCC---CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSEL---EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l---~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++... ...++ ....+++.+.+.|+|||.+++.....
T Consensus 112 ~~~~~----~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 112 VSAGN----VMGFLAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp EECCC----CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EECCc----HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 98521 11111 12689999999999999999977543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.3e-13 Score=111.84 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=83.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|.++..+++. +.+++++|+++.+++.|++++... ..+++++.+|+.++...++||+|++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~fD~v~~~ 108 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQ------GLKPRLACQDISNLNINRKFDLITCC 108 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHT------TCCCEEECCCGGGCCCSCCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhc------CCCeEEEecccccCCccCCceEEEEc
Confidence 6789999999999999999885 579999999999999999986422 23799999999887434889999974
Q ss_pred C-CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 L-FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~-~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
. .-+ ..+..-...++++++++.|+|||.+++.+.+
T Consensus 109 ~~~l~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 109 LDSTN-YIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp TTGGG-GCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred Ccccc-ccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 2 111 1111012368999999999999999997754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=116.19 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=86.8
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
.|.+.+.....+.++.+|||||||+|.++..+++. +..+|++||++ .+++.|++.+....+ .++++++.+|+.+
T Consensus 25 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~----~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGF----SDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTC----TTTEEEEESCTTT
T ss_pred HHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCC----CCCEEEEECchhh
Confidence 35555532222346789999999999999999884 55699999999 589999988643321 3579999999998
Q ss_pred c-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 144 A-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 144 ~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+ ...++||+|+++..... ....-....++..+.+.|+|||+++.
T Consensus 99 ~~~~~~~~D~Ivs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 99 VHLPFPKVDIIISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCCSSSCEEEEEECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCCCCcccEEEEeCchhh-cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 8 44478999998743221 11122245789999999999999973
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=108.90 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=81.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.+..+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++.... -++++++.+|+..- ....+||+
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~ 161 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG-----VKNVHVILGDGSKGFPPKAPYDV 161 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC-----CCCcEEEECCcccCCCCCCCccE
Confidence 355788999999999999999999776 899999999999999999864322 23599999998433 44456999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+++.... + +.+.+.+.|+|||++++.+...
T Consensus 162 Ii~~~~~~-----~-----~~~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 162 IIVTAGAP-----K-----IPEPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp EEECSBBS-----S-----CCHHHHHTEEEEEEEEEEECSS
T ss_pred EEECCcHH-----H-----HHHHHHHhcCCCcEEEEEEecC
Confidence 99864322 1 1247889999999999988654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=107.62 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..++.+|||||||+|.++..+++.+|+.+|+++|+++.+++.+.++..... ....-++++++++|+.++ ...+. |.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~-~~~~~~~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP-AKGGLPNLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCG-GGTCCTTEEEEECCSTTCCSCCCE-EEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhh-hhcCCCceEEEecchhhCCCCCCC-CEE
Confidence 346789999999999999999999999999999999998885332221000 000134799999999987 33344 777
Q ss_pred EEcCCCCCCCC-CC-CCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLL-SE-LEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~-~~-l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...... .. .+ -...++++++++.|||||.+++..
T Consensus 103 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 103 HVLMPWGS-LLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EEESCCHH-HHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEccchh-hhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 64321110 00 00 012689999999999999999865
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=108.31 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=83.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-----CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-----PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-----p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
.+.+..+|||||||+|.++..+++.. |..+|+++|+++.+++.|++++..........++++++.+|+.+.
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 45678899999999999999999875 457999999999999999998642210000025799999999874
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...++||+|+++...+ .+++.+.+.|+|||++++.+.
T Consensus 157 ~~~~~~fD~I~~~~~~~----------~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASAS----------ELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBS----------SCCHHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchH----------HHHHHHHHhcCCCcEEEEEEc
Confidence 3356899999875432 234788999999999999875
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=110.90 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=99.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHH-------CCC-----ceEEEEECCh---HH-----------HHHHHHhcCc-cc----
Q 035593 77 PPGPIGILGFGAGSAARLILDL-------YPE-----AVIHGWELDP---SV-----------IKVAREFFAL-EK---- 125 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~-------~p~-----~~v~~vEidp---~~-----------~~~a~~~~~~-~~---- 125 (269)
++.+|||||+|+|..+..+++. .|+ .+++++|.+| +. .+.|++.+.. +.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999999887654 563 5999999987 33 3355554321 00
Q ss_pred cc--cCC--CCcEEEEEcccccc--ccC----CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCc
Q 035593 126 LE--KSY--PDRLFVYVGNALKA--SLK----DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCV 195 (269)
Q Consensus 126 ~~--~~~--~~rv~~~~~D~~~~--~~~----~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~ 195 (269)
.. ... ..+++++.+|+++. ... ..||+|++|++++. ..+.+++.++|+.++++|+|||+|++ ++..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~-~~p~lw~~~~l~~l~~~L~pGG~l~t--ysaa- 215 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA-KNPDMWTQNLFNAMARLARPGGTLAT--FTSA- 215 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT-TCGGGCCHHHHHHHHHHEEEEEEEEE--SCCB-
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc-cChhhcCHHHHHHHHHHcCCCcEEEE--EeCC-
Confidence 00 011 24688999999985 222 27999999998763 45578899999999999999999996 3331
Q ss_pred cccccccchhHHHHHHHHHHHHH-hcCceEEEEcCCCCceEEEEecCC
Q 035593 196 EAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSLGNRKDDSLIALTGE 242 (269)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~~~~n~v~~~~~~~ 242 (269)
. .+.+.|.++ | .+...+.......++.+....
T Consensus 216 ---------~----~vrr~L~~aGF--~v~~~~g~~~kr~m~~a~~~~ 248 (257)
T 2qy6_A 216 ---------G----FVRRGLQEAGF--TMQKRKGFGRKREMLCGVMEQ 248 (257)
T ss_dssp ---------H----HHHHHHHHHTE--EEEEECCSTTCCCEEEEEEC-
T ss_pred ---------H----HHHHHHHHCCC--EEEeCCCCCCCCceEEEEecC
Confidence 1 344556665 6 355444444455677776544
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-13 Score=112.58 Aligned_cols=108 Identities=10% Similarity=-0.041 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECC-hHHHHHH---HHhcCccccccCCCCcEEEEEccccccc--cCCC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELD-PSVIKVA---REFFALEKLEKSYPDRLFVYVGNALKAS--LKDG 149 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEid-p~~~~~a---~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~ 149 (269)
.++.+|||||||+|.++..+++..++.+|++||++ +.|++.| +++..... -++++++.+|+..+. ....
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-----~~~v~~~~~d~~~l~~~~~d~ 97 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG-----LSNVVFVIAAAESLPFELKNI 97 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC-----CSSEEEECCBTTBCCGGGTTC
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-----CCCeEEEEcCHHHhhhhccCe
Confidence 36789999999999999999977789999999999 7777776 66543221 357999999999872 2356
Q ss_pred eeEEEEcCCCCCCCC-CCCCcHHHHHHHHhhccCCcEEEE
Q 035593 150 FSGILVDLFSKGSLL-SELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 150 yD~I~~d~~~~~~~~-~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+|.|.+....+.... ......++++++++.|||||.+++
T Consensus 98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 777766432110000 001235799999999999999988
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=109.29 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--cc-CCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SL-KDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~-~~~yD~ 152 (269)
.++.+|||||||+|.++..+++. +.+|+++|+++.+++.|+++. ++++++++|+.+. .. .++||+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~~~fD~ 114 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANA----------PHADVYEWNGKGELPAGLGAPFGL 114 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC----------TTSEEEECCSCSSCCTTCCCCEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC----------CCceEEEcchhhccCCcCCCCEEE
Confidence 46789999999999999999985 679999999999999999882 3689999999654 33 679999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
|++.. ....+++++++.|+|||.++
T Consensus 115 v~~~~----------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 115 IVSRR----------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp EEEES----------CCSGGGGGHHHHEEEEEEEE
T ss_pred EEeCC----------CHHHHHHHHHHHcCCCcEEE
Confidence 99861 13578899999999999998
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=107.95 Aligned_cols=108 Identities=10% Similarity=-0.002 Sum_probs=87.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||||+|.++..+++..|..+|+++|+||.+++.|++++...+ ...+++++.+|+.+. ...++||+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g----l~~~I~~~~gD~l~~~~~~~~~D~I 94 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG----LTSKIDVRLANGLSAFEEADNIDTI 94 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhhccccccccCEE
Confidence 446789999999999999999997777899999999999999999875443 135899999999987 444479998
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++..... . ...+++....+.|+++|.|+++-..
T Consensus 95 viaGmGg-----~-lI~~IL~~~~~~l~~~~~lIlqp~~ 127 (230)
T 3lec_A 95 TICGMGG-----R-LIADILNNDIDKLQHVKTLVLQPNN 127 (230)
T ss_dssp EEEEECH-----H-HHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred EEeCCch-----H-HHHHHHHHHHHHhCcCCEEEEECCC
Confidence 8642221 1 1358899999999999999998753
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=104.39 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=81.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++++... .+++++.+|+.+. ...++||+
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~fD~ 137 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY-------NNIKLILGDGTLGYEEEKPYDR 137 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC-------SSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc-------CCeEEEECCcccccccCCCccE
Confidence 45578899999999999999999864 79999999999999999987532 2799999999874 44678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+++...+ ++ .+.+.+.|+|||++++.....
T Consensus 138 v~~~~~~~-----~~-----~~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 138 VVVWATAP-----TL-----LCKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp EEESSBBS-----SC-----CHHHHHTEEEEEEEEEEECSS
T ss_pred EEECCcHH-----HH-----HHHHHHHcCCCcEEEEEEcCC
Confidence 99864322 22 146889999999999987543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-12 Score=110.25 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=84.8
Q ss_pred CCCcEEEEcCcc---cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--------
Q 035593 77 PPGPIGILGFGA---GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS-------- 145 (269)
Q Consensus 77 ~~~~VL~iG~G~---G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~-------- 145 (269)
+..+|||||||+ |.++..+.+..|+.+|++||+||.|++.|++.+.. .++++++.+|+.+..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~ 149 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRDPEYILNHPDV 149 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHSHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCCchhhhccchh
Confidence 357999999999 99888887878999999999999999999998742 358999999997631
Q ss_pred ----cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 146 ----LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 146 ----~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...+||+|++...-+ ..+.. ....++++++++|+|||.|++.....
T Consensus 150 ~~~~d~~~~d~v~~~~vlh-~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 150 RRMIDFSRPAAIMLVGMLH-YLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHCCTTSCCEEEETTTGG-GSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred hccCCCCCCEEEEEechhh-hCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 114799998753222 11222 24689999999999999999877543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-12 Score=104.83 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=90.8
Q ss_pred CCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc------
Q 035593 72 LPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS------ 145 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~------ 145 (269)
+..+.+..+|||||||+|.++..++++ +.+|++||++|.. . .++++++++|+.+..
T Consensus 20 ~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~--------~--------~~~v~~~~~D~~~~~~~~~~~ 81 (191)
T 3dou_A 20 YRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME--------E--------IAGVRFIRCDIFKETIFDDID 81 (191)
T ss_dssp HCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC--------C--------CTTCEEEECCTTSSSHHHHHH
T ss_pred cCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc--------c--------CCCeEEEEccccCHHHHHHHH
Confidence 334567899999999999999999885 7899999999841 1 247999999998751
Q ss_pred --cC----CCeeEEEEcCCCCCCCCC---CC----CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHH
Q 035593 146 --LK----DGFSGILVDLFSKGSLLS---EL----EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATL 212 (269)
Q Consensus 146 --~~----~~yD~I~~d~~~~~~~~~---~l----~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (269)
.. ++||+|++|+.....-.. +. .....++.+.+.|+|||.|++-++... ....+.
T Consensus 82 ~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~------------~~~~~~ 149 (191)
T 3dou_A 82 RALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD------------MTNDFI 149 (191)
T ss_dssp HHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST------------HHHHHH
T ss_pred HHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC------------CHHHHH
Confidence 11 499999999743211100 00 014678889999999999999887542 245677
Q ss_pred HHHHHHhcCceEEEE
Q 035593 213 KAMHKVFGKKLYVLS 227 (269)
Q Consensus 213 ~~l~~~F~~~v~~~~ 227 (269)
..++..|. .+...+
T Consensus 150 ~~l~~~F~-~v~~~k 163 (191)
T 3dou_A 150 AIWRKNFS-SYKISK 163 (191)
T ss_dssp HHHGGGEE-EEEEEC
T ss_pred HHHHHhcC-EEEEEC
Confidence 88888895 566653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-12 Score=114.14 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=84.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~I~ 154 (269)
.+.+|||||||+|..+..+++.+|+.+++++|+ |.+++.|++++...+ ..++++++.+|+.+.. .++.||+|+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~p~~~D~v~ 253 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS----GSERIHGHGANLLDRDVPFPTGFDAVW 253 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT----TGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC----cccceEEEEccccccCCCCCCCcCEEE
Confidence 478999999999999999999999999999999 999999999875322 1358999999998752 347899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+...-+. .+. -....+++++++.|+|||.+++.-
T Consensus 254 ~~~vlh~-~~~-~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 254 MSQFLDC-FSE-EEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp EESCSTT-SCH-HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred Eechhhh-CCH-HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7432221 110 012478999999999999998754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=106.41 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc--
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-- 143 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-- 143 (269)
.+.+.....+.+..+|||||||+|.++..++++ +.+|++||+|+.|++.|++++... .++.-..|...
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~--------~v~~~~~~~~~~~ 103 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR--------CVTIDLLDITAEI 103 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS--------CCEEEECCTTSCC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc--------cceeeeeeccccc
Confidence 334443434567889999999999999999984 679999999999999999987421 12322223222
Q ss_pred -cccCCCeeEEEEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEecC
Q 035593 144 -ASLKDGFSGILVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 144 -~~~~~~yD~I~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
....++||+|+++..- .++. ...+++.+.+.| |||++++.+..
T Consensus 104 ~~~~~~~fD~Vv~~~~l-----~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 104 PKELAGHFDFVLNDRLI-----NRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CGGGTTCCSEEEEESCG-----GGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ccccCCCccEEEEhhhh-----HhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 1225689999986421 1221 246899999999 99999998753
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=104.01 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=87.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC--CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc------
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP--EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS------ 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p--~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~------ 145 (269)
.+.+..+|||||||+|.++..++++++ +.+|+++|+++.. . .++++++++|+.+..
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~--------~~~v~~~~~d~~~~~~~~~~~ 82 (201)
T 2plw_A 19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P--------IPNVYFIQGEIGKDNMNNIKN 82 (201)
T ss_dssp CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C--------CTTCEEEECCTTTTSSCCC--
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C--------CCCceEEEccccchhhhhhcc
Confidence 355778999999999999999999887 6899999999931 1 246899999987653
Q ss_pred --------------------cCCCeeEEEEcCCCCCCCC---CCCC----cHHHHHHHHhhccCCcEEEEEecCCCcccc
Q 035593 146 --------------------LKDGFSGILVDLFSKGSLL---SELE----DPNTWEKLRQCLRKGGRIMVNVGGSCVEAE 198 (269)
Q Consensus 146 --------------------~~~~yD~I~~d~~~~~~~~---~~l~----~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~ 198 (269)
...+||+|+++...+..-. .+.. ...+++.+.+.|+|||.+++.++...
T Consensus 83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~---- 158 (201)
T 2plw_A 83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS---- 158 (201)
T ss_dssp ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST----
T ss_pred ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC----
Confidence 3468999999754221100 0000 12478899999999999999776532
Q ss_pred ccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 199 DSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
....+...++..|. .+..+
T Consensus 159 --------~~~~l~~~l~~~f~-~v~~~ 177 (201)
T 2plw_A 159 --------QTNNLKTYLKGMFQ-LVHTT 177 (201)
T ss_dssp --------THHHHHHHHHTTEE-EEEEC
T ss_pred --------CHHHHHHHHHHHHh-eEEEE
Confidence 13456667777775 44443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-12 Score=108.17 Aligned_cols=107 Identities=13% Similarity=0.067 Sum_probs=86.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||||+|.++..+++..|..+|+++|+||.+++.|++++...+ ...+++++.+|+.+. ...++||+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g----l~~~I~v~~gD~l~~~~~~~~~D~I 94 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG----LTEQIDVRKGNGLAVIEKKDAIDTI 94 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEecchhhccCccccccEE
Confidence 446789999999999999999997777899999999999999999875433 135899999999887 333469999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++..... . ...+++....+.|+++|.|+++-.
T Consensus 95 viagmGg-----~-lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 95 VIAGMGG-----T-LIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp EEEEECH-----H-HHHHHHHHTGGGGTTCCEEEEEES
T ss_pred EEeCCch-----H-HHHHHHHHHHHHhCCCCEEEEEcC
Confidence 8632211 1 135889999999999999999874
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=104.59 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=80.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++.+|||||||+|..+..+ +. +++++|+++.+++.|++++ ++++++.+|+.+. ...++||+|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTSCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcccccCCCCCCcEEEEE
Confidence 7889999999999999876 45 9999999999999999986 2588999999887 4567899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+...-. ..+ ...++++++++.|+|||.+++.....
T Consensus 101 ~~~~l~-~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 101 LFTTLE-FVE---DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp EESCTT-TCS---CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcChhh-hcC---CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 753211 111 24689999999999999999987654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-12 Score=113.43 Aligned_cols=110 Identities=19% Similarity=0.045 Sum_probs=82.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~yD 151 (269)
++.+|||+|||+|.++..+++. +.+|++||+|+.+++.|++++..+.. .+.+++++++|+.++ . ..++||
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl---~~~~v~~i~~D~~~~l~~~~~~~~~fD 227 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGL---EQAPIRWICEDAMKFIQREERRGSTYD 227 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTC---TTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECcHHHHHHHHHhcCCCce
Confidence 5679999999999999999983 45999999999999999998754331 122599999999987 2 157899
Q ss_pred EEEEcCCCCCCCC-CCC-----CcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLL-SEL-----EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~-~~l-----~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|++|.+.-.... ..+ ...++++.+.+.|+|||++++...
T Consensus 228 ~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 228 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 9999864211000 000 125789999999999999666543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=108.46 Aligned_cols=97 Identities=19% Similarity=0.287 Sum_probs=81.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.++.+|||||||+|.++..+++..++.+|+++|+++.+++.|++.. ++++++.+|+.+. ...++||+|+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~ 153 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRLPFSDTSMDAII 153 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcchhhCCCCCCceeEEE
Confidence 4678999999999999999999777889999999999999999874 3578999999877 4567899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+... ..+++++.+.|+|||.+++.....
T Consensus 154 ~~~~-----------~~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 154 RIYA-----------PCKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp EESC-----------CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred EeCC-----------hhhHHHHHHhcCCCcEEEEEEcCH
Confidence 6321 235899999999999999887654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-12 Score=105.86 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=82.9
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC------CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP------EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p------~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~ 146 (269)
.+.+..+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++..........++++++.+|+.+. ..
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc
Confidence 356788999999999999999988654 26999999999999999988642110000014799999999875 44
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.++||+|+++.... .+.+.+.+.|+|||++++.+..
T Consensus 161 ~~~fD~I~~~~~~~----------~~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 161 NAPYNAIHVGAAAP----------DTPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GCSEEEEEECSCBS----------SCCHHHHHTEEEEEEEEEEESC
T ss_pred CCCccEEEECCchH----------HHHHHHHHHhcCCCEEEEEEec
Confidence 47899999865422 1237889999999999999864
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=113.31 Aligned_cols=115 Identities=10% Similarity=-0.022 Sum_probs=83.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc--cCCCCcEEEEEccccccc-------c
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE--KSYPDRLFVYVGNALKAS-------L 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~--~~~~~rv~~~~~D~~~~~-------~ 146 (269)
.++.+|||||||+|..+..+++ .+..+++++|+++.+++.|++++...... .....+++++++|+.+.. .
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 3678999999999999999987 46789999999999999999886321000 001247999999998752 2
Q ss_pred CCCeeEEEEcCCCCCCCCCC-CCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 147 KDGFSGILVDLFSKGSLLSE-LEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~-l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.++||+|++...-+. ...+ -....+++++++.|+|||.+++...+
T Consensus 112 ~~~fD~V~~~~~l~~-~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHY-SFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGG-GGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecchhh-ccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 458999997532110 1011 11258999999999999999998854
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-12 Score=109.55 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..++.+|||||||+|..+..+++ ++.+|+++|+++.+++.|++.. +++++++|+.++ ...++||+|
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-----------QVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-----------TEEEECCCTTSCCSCTTCBSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-----------CCEEEECchhhCCCCCCCEeEE
Confidence 45788999999999999999987 7889999999999998876542 699999999887 456899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...-. .. -....+++++++.|| ||.+++..+.
T Consensus 99 ~~~~~l~-~~---~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 99 ISILAIH-HF---SHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp EEESCGG-GC---SSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred EEcchHh-hc---cCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 9753211 11 124689999999999 9977766554
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=114.75 Aligned_cols=118 Identities=16% Similarity=0.065 Sum_probs=84.3
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-----cccccCCCCcEEEEEcc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-----EKLEKSYPDRLFVYVGN 140 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-----~~~~~~~~~rv~~~~~D 140 (269)
...++....+.+..+|||||||+|.++..++...+..+|++||+++.++++|++.... ..++ ....+++++++|
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G-l~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG-KKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT-BCCCEEEEEECC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCCCCeEEEECc
Confidence 3334333345678899999999999999999876655799999999999999864210 0000 012589999999
Q ss_pred cccc-ccC--CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 141 ALKA-SLK--DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 141 ~~~~-~~~--~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+.+. ... ..+|+|+++.+- ..+ .....++++.+.|||||.|++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~---F~p--dl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFA---FGP--EVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTT---CCH--HHHHHHHHHHTTSCTTCEEEES
T ss_pred ccCCccccccCCccEEEEcccc---cCc--hHHHHHHHHHHcCCCCcEEEEe
Confidence 9886 211 479999985331 111 1356788899999999999875
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=105.96 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||||||+|.++..++...|+++|+++|+|+.|++++++++...+ ...++++ .|......+++||+|+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g----~~~~v~~--~d~~~~~~~~~~DvVL 120 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK----TTIKYRF--LNKESDVYKGTYDVVF 120 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC----CSSEEEE--ECCHHHHTTSEEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCccEEE--ecccccCCCCCcChhh
Confidence 356899999999999999999988889999999999999999999975332 0124555 6665446678899998
Q ss_pred EcCCCCCCCCCCCC-cHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELE-DPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~-~~e~~~~~~~~L~pgG~l~~ 188 (269)
.-- ..+.+. .+..+.++.+.|+|||+++-
T Consensus 121 a~k-----~LHlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 121 LLK-----MLPVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp EET-----CHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred Hhh-----HHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 631 111220 11344489999999998864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=115.08 Aligned_cols=114 Identities=11% Similarity=-0.048 Sum_probs=85.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCC-cEEEEEcccccc-c----cCCC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPD-RLFVYVGNALKA-S----LKDG 149 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~-rv~~~~~D~~~~-~----~~~~ 149 (269)
.+.++|||+|||+|.++..+++. ...+|++||+++.+++.|++++..+.. .+ +++++.+|+.++ . ...+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~----~~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHL----DMANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTC----CCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CccceEEEECCHHHHHHHHHHhCCC
Confidence 56789999999999999999873 234899999999999999999865431 23 799999999886 1 2468
Q ss_pred eeEEEEcCCCCCCCCCCCC-----cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 150 FSGILVDLFSKGSLLSELE-----DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~-----~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
||+|++|.+.......... ..++++.+.+.|+|||++++.+....
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 9999998654210001111 13567788999999999999887653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=97.78 Aligned_cols=99 Identities=8% Similarity=-0.004 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||+|||+|.++..+++.. +|+++|+|+.+++. . ++++++++|+.+....++||+|++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------~-------~~~~~~~~d~~~~~~~~~fD~i~~ 84 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------H-------RGGNLVRADLLCSINQESVDVVVF 84 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------C-------SSSCEEECSTTTTBCGGGCSEEEE
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------c-------cCCeEEECChhhhcccCCCCEEEE
Confidence 357799999999999999998854 99999999999987 1 358999999987644579999998
Q ss_pred cCCCCCCCCC-----CCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLS-----ELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~-----~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+..-...... .....++++.+.+.| |||.+++....
T Consensus 85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 6432211000 011257899999999 99999887754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-13 Score=112.72 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=80.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHH--CCCceEEEEECChHHHHHHHHhcCcc---ccccCCCCc------------------
Q 035593 77 PPGPIGILGFGAGSAARLILDL--YPEAVIHGWELDPSVIKVAREFFALE---KLEKSYPDR------------------ 133 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~--~p~~~v~~vEidp~~~~~a~~~~~~~---~~~~~~~~r------------------ 133 (269)
++.+|||+|||+|.++..+++. .++.+|+++|+|+.+++.|+++.... .. ..+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 126 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL----TARELERREQSERFGKPSYLE 126 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH----HHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc----cccchhhhhhhhhcccccchh
Confidence 5679999999999999999987 56789999999999999999875322 10 011
Q ss_pred -------EE-------------EEEccccccc------cCCCeeEEEEcCCCCCCCC-CC----CCcHHHHHHHHhhccC
Q 035593 134 -------LF-------------VYVGNALKAS------LKDGFSGILVDLFSKGSLL-SE----LEDPNTWEKLRQCLRK 182 (269)
Q Consensus 134 -------v~-------------~~~~D~~~~~------~~~~yD~I~~d~~~~~~~~-~~----l~~~e~~~~~~~~L~p 182 (269)
++ ++++|+.+.. ...+||+|+++..-..... .+ -....+++.+.+.|+|
T Consensus 127 ~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 206 (250)
T 1o9g_A 127 AAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA 206 (250)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred hhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC
Confidence 55 9999988763 3458999998742110000 00 1124899999999999
Q ss_pred CcEEEE
Q 035593 183 GGRIMV 188 (269)
Q Consensus 183 gG~l~~ 188 (269)
||++++
T Consensus 207 gG~l~~ 212 (250)
T 1o9g_A 207 HAVIAV 212 (250)
T ss_dssp TCEEEE
T ss_pred CcEEEE
Confidence 999998
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-12 Score=110.77 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=76.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccccc-CCCCcEEEEEcccc------cc---cc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEK-SYPDRLFVYVGNAL------KA---SL 146 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~-~~~~rv~~~~~D~~------~~---~~ 146 (269)
++.+|||||||+|..+..+++. ...+|+++|+++.|++.|+++........ ....+++++++|+. ++ ..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3679999999999866655542 45799999999999999998763211000 00013677788772 22 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.++||+|++-..-+ ..........++++++++|||||++++...+
T Consensus 127 ~~~FD~V~~~~~lh-y~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIH-YSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGG-GTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHH-HhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 56899998643211 0111112368999999999999999988754
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=110.09 Aligned_cols=105 Identities=22% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++.... ..++++++.+|+.+.. +..||+|++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~-~~~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG----LADRVTVAEGDFFKPL-PVTADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCC-SCCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC----CCCceEEEeCCCCCcC-CCCCCEEEE
Confidence 4578999999999999999999999999999999 999999999864221 1358999999987632 234999997
Q ss_pred cCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...-+ ++.. ..+++++++.|+|||.+++...
T Consensus 255 ~~vl~-----~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 255 SFVLL-----NWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp ESCGG-----GSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ecccc-----CCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 53211 1222 3799999999999998887654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.7e-12 Score=99.12 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=89.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------- 144 (269)
.+.+..+|||+|||+|.++..+++.+ ++.+++++|+++ +++. ++++++.+|+.+.
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSHHHHHHHHH
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccchhhhhhhc
Confidence 35578899999999999999999874 578999999999 6422 3689999999875
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCC-------cHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELE-------DPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~-------~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
...++||+|+++............ ...+++.+.+.|+|||.+++..+... ....+...++
T Consensus 83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~------------~~~~~~~~~~ 150 (180)
T 1ej0_A 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE------------GFDEYLREIR 150 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST------------THHHHHHHHH
T ss_pred cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC------------cHHHHHHHHH
Confidence 234689999987543211000000 15899999999999999999776542 1345667777
Q ss_pred HHhcCceEEE
Q 035593 217 KVFGKKLYVL 226 (269)
Q Consensus 217 ~~F~~~v~~~ 226 (269)
+.|. .+...
T Consensus 151 ~~~~-~~~~~ 159 (180)
T 1ej0_A 151 SLFT-KVKVR 159 (180)
T ss_dssp HHEE-EEEEE
T ss_pred Hhhh-hEEee
Confidence 7784 45444
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=109.15 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=83.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
+..+|||||||+|..+..+++.+|+.+++++|+ |.+++.|++++.... ..++++++.+|+.+..+ ..||+|++-
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~p-~~~D~v~~~ 242 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG----LSGRAQVVVGSFFDPLP-AGAGGYVLS 242 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCC-CSCSEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC----cCcCeEEecCCCCCCCC-CCCcEEEEe
Confidence 468999999999999999999999999999999 999999998864221 13689999999974322 289999974
Q ss_pred CCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.. ..++.. .++++++++.|+|||.+++...
T Consensus 243 ~v-----lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 243 AV-----LHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp SC-----GGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hh-----hccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 22 112222 5899999999999999988654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-12 Score=107.59 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=80.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||||||+|.++..+++. +.+++++|+++.+++.|+++.. . .++.+|+.+. ...++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~---------~--~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV---------K--NVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC---------S--CEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC---------C--CEEECcHHHCCCCCCCEEEEEE
Confidence 6789999999999999999884 6799999999999999998853 1 2788998877 45678999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..... ...+ ....+++++++.|+|||.+++...+.
T Consensus 121 ~~~~~-~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 121 LGDVL-SYVE--NKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CSSHH-HHCS--CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred cchhh-hccc--cHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 42100 0111 15789999999999999999987653
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=113.83 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=89.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD 151 (269)
..++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.+++++.... -. ++++.+|+.++. ..++||
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-----~~-v~~~~~Da~~l~~~~~~~FD 172 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG-----AP-LAVTQAPPRALAEAFGTYFH 172 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-----CC-CEEECSCHHHHHHHHCSCEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----Ce-EEEEECCHHHhhhhccccCC
Confidence 346889999999999999999988764 799999999999999999874322 23 899999998872 567899
Q ss_pred EEEEcCCCCC-CC---CCCC--------------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SL---LSEL--------------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~---~~~l--------------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|++|++-.. ++ .+.. ...++++.+.+.|||||+|++...+..
T Consensus 173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 9999975431 11 0111 016789999999999999998876654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-12 Score=111.13 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=84.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+..+|||+|||+|.++.. ++ ...+|+++|+||.+++.|++++..+.. .++++++.+|+.++. ++||+|++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l----~~~v~~~~~D~~~~~--~~fD~Vi~ 264 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKL----EHKIIPILSDVREVD--VKGNRVIM 264 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGCC--CCEEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECChHHhc--CCCcEEEE
Confidence 4678999999999999999 76 577999999999999999999765431 257999999999876 78999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|.+.. ..++++.+.+.|+|||++++..++.
T Consensus 265 dpP~~--------~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 265 NLPKF--------AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp CCTTT--------GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred CCcHh--------HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 75322 3489999999999999998876654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-11 Score=110.22 Aligned_cols=112 Identities=17% Similarity=0.046 Sum_probs=82.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~ 152 (269)
+.++++|||+|||+|..+..+++. +.+|++||+|+.+++.|++++..+.. ..++.++|+.++ ...+.||+
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~------~~~~~~~D~~~~l~~~~~~fD~ 283 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGL------RVDIRHGEALPTLRGLEGPFHH 283 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCHHHHHHTCCCCEEE
T ss_pred hcCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCC------CCcEEEccHHHHHHHhcCCCCE
Confidence 346889999999999999999984 55699999999999999999865431 135669999987 22345999
Q ss_pred EEEcCCCCCCCCCCC-----CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 153 ILVDLFSKGSLLSEL-----EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 153 I~~d~~~~~~~~~~l-----~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|++|++.-....... ...++++.+.+.|+|||++++...+..
T Consensus 284 Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 284 VLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp EEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999854311000000 114788899999999999987665543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=110.59 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=85.3
Q ss_pred CC-CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeE
Q 035593 76 LP-PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSG 152 (269)
Q Consensus 76 ~~-~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~ 152 (269)
.+ +.+|||||||+|.++..+++++|+.+++++|+ |.+++.|++++...+ ..++++++.+|+.+.. .++.||+
T Consensus 177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~D~ 251 (352)
T 3mcz_A 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD----LGGRVEFFEKNLLDARNFEGGAADV 251 (352)
T ss_dssp GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT----CGGGEEEEECCTTCGGGGTTCCEEE
T ss_pred cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC----CCCceEEEeCCcccCcccCCCCccE
Confidence 34 78999999999999999999999999999999 899999998864222 1358999999998774 6677999
Q ss_pred EEEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++...- .++. ...+++++++.|+|||.+++...
T Consensus 252 v~~~~vl-----h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 252 VMLNDCL-----HYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp EEEESCG-----GGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeccc-----ccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9974221 1222 25899999999999999988643
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=111.45 Aligned_cols=111 Identities=13% Similarity=-0.020 Sum_probs=87.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~yD 151 (269)
+..+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++..+. -.+++++.+|+.++ . ...+||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~-----~~~~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC-----CCCceEEECCHHHHHHHHHhcCCCee
Confidence 7789999999999999999986 6799999999999999999986543 23499999999887 2 267899
Q ss_pred EEEEcCCCCCCCCCCC-----CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKGSLLSEL-----EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l-----~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|++|++......... ...++++.+.+.|+|||++++...+..
T Consensus 282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999864321111110 124788999999999999999876653
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=109.32 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|..+..+++++|+.+++++|+ |.+++.|++++.... ..++++++.+|+.+..+. .||+|+
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~----l~~~v~~~~~d~~~~~p~-~~D~v~ 273 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG----LADRCEILPGDFFETIPD-GADVYL 273 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTTCCCS-SCSEEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC----cCCceEEeccCCCCCCCC-CceEEE
Confidence 34578999999999999999999999999999999 999999999874221 136899999999843333 899999
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+...- .++.. ..+++++++.|+|||.+++...
T Consensus 274 ~~~vl-----h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 274 IKHVL-----HDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp EESCG-----GGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred hhhhh-----ccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 74321 11222 2699999999999999988543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=112.34 Aligned_cols=105 Identities=10% Similarity=-0.045 Sum_probs=83.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-cc--cCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-AS--LKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~~--~~~~yD~I 153 (269)
++.+||||| |+|.++..+++..++.+|+++|+||.+++.|++++.... -.+++++.+|+.+ +. ..++||+|
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g-----~~~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG-----YEDIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT-----CCCEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEEChhhhhchhhccCCccEE
Confidence 578999999 999999999987777899999999999999999874322 1279999999998 42 34689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCc-EEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGG-RIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG-~l~~~~~~ 192 (269)
++|.+-.. .. ..++++.+.+.|+||| ++++.+..
T Consensus 246 i~~~p~~~---~~--~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 246 ITDPPETL---EA--IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp EECCCSSH---HH--HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred EECCCCch---HH--HHHHHHHHHHHcccCCeEEEEEEec
Confidence 99853211 11 3789999999999999 44555544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-13 Score=113.22 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=80.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.|++++.... ..++++++++|+.++...++||+|+++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~D~v~~~ 151 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYG----IADKIEFICGDFLLLASFLKADVVFLS 151 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHHGGGCCCSEEEEC
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC----CCcCeEEEECChHHhcccCCCCEEEEC
Confidence 6789999999999999999984 5899999999999999999874322 124799999999988666799999987
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-.. ... ....+..+++.|+|||.+++..
T Consensus 152 ~~~~~--~~~--~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 152 PPWGG--PDY--ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CCCSS--GGG--GGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcCC--cch--hhhHHHHHHhhcCCcceeHHHH
Confidence 53221 110 1124556888999999876643
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=112.19 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=85.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc---------------ccccCCCCcEEEEEccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE---------------KLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~---------------~~~~~~~~rv~~~~~D~ 141 (269)
++.+|||+|||+|..+..++++.++.+|+++|+|++.++.+++++..+ . -.+++++++|+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-----l~~i~v~~~Da 121 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-----EKTIVINHDDA 121 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-----SSEEEEEESCH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-----CCceEEEcCcH
Confidence 678999999999999999999877789999999999999999987544 2 12399999999
Q ss_pred ccc--ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 142 LKA--SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 142 ~~~--~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+ ...++||+|++|.+.. ..++++.+.+.|++||++.+.+
T Consensus 122 ~~~~~~~~~~fD~I~lDP~~~--------~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 122 NRLMAERHRYFHFIDLDPFGS--------PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHHSTTCEEEEEECCSSC--------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCCCEEEeCCCCC--------HHHHHHHHHHhcCCCCEEEEEe
Confidence 987 2356899999987532 3689999999999999988865
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=99.63 Aligned_cols=125 Identities=10% Similarity=0.080 Sum_probs=88.5
Q ss_pred CCCCCCCCcEEEEcCcccHHHHHHHHHCCC---------ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE-Eccc
Q 035593 72 LPPILPPGPIGILGFGAGSAARLILDLYPE---------AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY-VGNA 141 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~---------~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~-~~D~ 141 (269)
+..+.+..+|||||||+|.++..+++.++. .+|+++|+++.. . .++++++ .+|+
T Consensus 17 ~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~--------~~~~~~~~~~d~ 80 (196)
T 2nyu_A 17 HQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P--------LEGATFLCPADV 80 (196)
T ss_dssp HCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C--------CTTCEEECSCCT
T ss_pred cCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c--------CCCCeEEEeccC
Confidence 334567889999999999999999998764 899999999831 1 1358888 8887
Q ss_pred cccc---------cCCCeeEEEEcCCCCCCCCCC-CCc-------HHHHHHHHhhccCCcEEEEEecCCCccccccccch
Q 035593 142 LKAS---------LKDGFSGILVDLFSKGSLLSE-LED-------PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDG 204 (269)
Q Consensus 142 ~~~~---------~~~~yD~I~~d~~~~~~~~~~-l~~-------~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~ 204 (269)
.... ..++||+|+++..... ...+ ... ..+++.+.+.|+|||.+++..+...
T Consensus 81 ~~~~~~~~~~~~~~~~~fD~V~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~---------- 149 (196)
T 2nyu_A 81 TDPRTSQRILEVLPGRRADVILSDMAPNA-TGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS---------- 149 (196)
T ss_dssp TSHHHHHHHHHHSGGGCEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG----------
T ss_pred CCHHHHHHHHHhcCCCCCcEEEeCCCCCC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc----------
Confidence 6541 2358999999753221 1111 001 3789999999999999999876542
Q ss_pred hHHHHHHHHHHHHHhcCceEEE
Q 035593 205 KVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 205 ~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
....+...++..|. .+..+
T Consensus 150 --~~~~~~~~l~~~f~-~v~~~ 168 (196)
T 2nyu_A 150 --QSRRLQRRLTEEFQ-NVRII 168 (196)
T ss_dssp --GGHHHHHHHHHHEE-EEEEE
T ss_pred --cHHHHHHHHHHHhc-ceEEE
Confidence 13456667777885 45554
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-11 Score=108.92 Aligned_cols=115 Identities=15% Similarity=-0.004 Sum_probs=87.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~y 150 (269)
.++.+|||+|||+|.++..+++. ...+|++||+++.+++.|++++..+.. ..++++++.+|+.++ . ...+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl---~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECCHHHHHHHHHhcCCCC
Confidence 46789999999999999999984 246999999999999999998864431 012799999999887 2 25789
Q ss_pred eEEEEcCCCCCCCCCC-----CCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILVDLFSKGSLLSE-----LEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~-----l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|+|++|.+........ -...+++..+.+.|+|||++++.+.+..
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 9999996432111111 1125789999999999999998876553
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=105.78 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChH------HHHHHHHhcCccccccCCCCcEEEEEcc-cccc--
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPS------VIKVAREFFALEKLEKSYPDRLFVYVGN-ALKA-- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~------~~~~a~~~~~~~~~~~~~~~rv~~~~~D-~~~~-- 144 (269)
+.++.+|||||||+|.++..+++++ |+.+|+++|+++. +++.|++++.... ..++++++.+| ....
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~ 116 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP----LGDRLTVHFNTNLSDDLG 116 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST----TGGGEEEECSCCTTTCCG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC----CCCceEEEECChhhhccC
Confidence 4578899999999999999999875 6689999999997 9999998874321 12579999998 3222
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCC-cHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELE-DPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~-~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...++||+|++...- .++. ...+++.+++.++|||.+++..+..
T Consensus 117 ~~~~~~fD~v~~~~~l-----~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 117 PIADQHFDRVVLAHSL-----WYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp GGTTCCCSEEEEESCG-----GGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CCCCCCEEEEEEccch-----hhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 245789999975321 1221 2456677777777799999876554
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=108.01 Aligned_cols=107 Identities=17% Similarity=0.106 Sum_probs=74.9
Q ss_pred CCCcEEEEcCcccHHHHH----HHHHCCCceE--EEEECChHHHHHHHHhcCccccccCCCCcE--EEEEccccccc---
Q 035593 77 PPGPIGILGFGAGSAARL----ILDLYPEAVI--HGWELDPSVIKVAREFFALEKLEKSYPDRL--FVYVGNALKAS--- 145 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~----l~~~~p~~~v--~~vEidp~~~~~a~~~~~~~~~~~~~~~rv--~~~~~D~~~~~--- 145 (269)
++.+|||||||+|.++.. ++..+|+.+| +++|++++|++.|++++.... .-+++ .+..+|+.++.
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~ 127 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS----NLENVKFAWHKETSSEYQSRM 127 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS----SCTTEEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc----CCCcceEEEEecchhhhhhhh
Confidence 467999999999976643 3444577755 999999999999998863210 01234 44556665442
Q ss_pred ----cCCCeeEEEEcCCCCCCCCCCCC-cHHHHHHHHhhccCCcEEEEEecC
Q 035593 146 ----LKDGFSGILVDLFSKGSLLSELE-DPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 146 ----~~~~yD~I~~d~~~~~~~~~~l~-~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+++||+|++... ..++. ...++++++++|||||.+++....
T Consensus 128 ~~~~~~~~fD~V~~~~~-----l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 128 LEKKELQKWDFIHMIQM-----LYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HTTTCCCCEEEEEEESC-----GGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccccCCCceeEEEEeee-----eeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3578999997422 12222 368999999999999999986543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.3e-12 Score=116.67 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=81.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||||||+|.++..+++ .+..+|+++|+++ +++.|++.+.... ..++++++.+|+.++..+++||+|+
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~g----l~~~v~~~~~d~~~~~~~~~fD~Iv 229 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEEVSLPEQVDIII 229 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTT----CTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcC----CCCcEEEEECchhhCccCCCeEEEE
Confidence 34678999999999999999987 5677999999999 9999998764322 1368999999999874456899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++.... ....-...+.+..+++.|+|||.+++..
T Consensus 230 s~~~~~--~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 230 SEPMGY--MLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp CCCCHH--HHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred EeCchH--hcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 753210 0000012467778899999999998544
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=112.90 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHH-------HHhcCccccccCCCCcEEEEEccccc---
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVA-------REFFALEKLEKSYPDRLFVYVGNALK--- 143 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a-------~~~~~~~~~~~~~~~rv~~~~~D~~~--- 143 (269)
.+.+..+|||||||+|.++..+++.++..+|++||+++.+++.| ++++..... ...+++++++|...
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl---~~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM---RLNNVEFSLKKSFVDNN 315 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB---CCCCEEEEESSCSTTCH
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC---CCCceEEEEcCcccccc
Confidence 45578899999999999999999877767999999999999999 766532110 01579999987653
Q ss_pred -c-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 144 -A-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 144 -~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+ ...++||+|+++.+.. .+ ...++++++.+.|+|||.+++.
T Consensus 316 ~~~~~~~~FDvIvvn~~l~---~~--d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNFLF---DE--DLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHHHHGGGCSEEEECCTTC---CH--HHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccCCCCEEEEeCccc---cc--cHHHHHHHHHHhCCCCeEEEEe
Confidence 2 1246899999753211 11 1347789999999999999874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=107.85 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=84.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||+|..+..+++.+|+.+++++|++ .+++.|++++.... ...+++++.+|+.+...++.||+|++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG----VASRYHTIAGSAFEVDYGNDYDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT----CGGGEEEEESCTTTSCCCSCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC----CCcceEEEecccccCCCCCCCcEEEE
Confidence 56789999999999999999999999999999999 99999998864221 12479999999987633445999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
...-+. .+ .-...++++++++.|+|||.+++....
T Consensus 239 ~~~l~~-~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 239 PNFLHH-FD-VATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp ESCGGG-SC-HHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cchhcc-CC-HHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 321110 00 011258999999999999988776543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-11 Score=107.00 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=82.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|..+..+++.+|+.+++++|+ |.+++.|++++.... ...+++++.+|+.+... ..+|+|+
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~-~~~D~v~ 261 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYKESY-PEADAVL 261 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT----CTTTEEEEECCTTTSCC-CCCSEEE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC----CCCCEEEEeCccccCCC-CCCCEEE
Confidence 44678999999999999999999999999999999 999999998864221 13579999999987622 2349999
Q ss_pred EcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+...- .++. ..++++++++.|+|||.+++..
T Consensus 262 ~~~vl-----h~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 262 FCRIL-----YSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EESCG-----GGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred Eechh-----ccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 74321 1122 3689999999999999997654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.24 E-value=6e-12 Score=107.52 Aligned_cols=77 Identities=12% Similarity=-0.064 Sum_probs=63.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c---cc---CCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A---SL---KDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~---~~---~~~ 149 (269)
++.+|||+|||+|.++..++++.++.+|+++|+++.+++.|++++.... ...+++++++|+.+ + .. +++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN----LSDLIKVVKVPQKTLLMDALKEESEII 140 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC----CCccEEEEEcchhhhhhhhhhcccCCc
Confidence 4679999999999999999887778899999999999999999874322 13469999999876 2 12 258
Q ss_pred eeEEEEcC
Q 035593 150 FSGILVDL 157 (269)
Q Consensus 150 yD~I~~d~ 157 (269)
||+|+++.
T Consensus 141 fD~i~~np 148 (254)
T 2h00_A 141 YDFCMCNP 148 (254)
T ss_dssp BSEEEECC
T ss_pred ccEEEECC
Confidence 99999984
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-11 Score=107.36 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++.... ..++++++.+|+.+.. +..||+|++
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~-~~~~D~v~~ 255 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG----LSDRVDVVEGDFFEPL-PRKADAIIL 255 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT----CTTTEEEEECCTTSCC-SSCEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC----CCCceEEEeCCCCCCC-CCCccEEEE
Confidence 3578999999999999999999999999999999 999999998864222 1358999999987642 235999987
Q ss_pred cCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
...-+ ++.. .++++++++.|+|||.+++....
T Consensus 256 ~~vl~-----~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 256 SFVLL-----NWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp ESCGG-----GSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccc-----CCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 43211 1222 47999999999999988876543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=111.28 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=89.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
..++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++.... -.+++++.+|+..+ ...++||
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-----~~nv~v~~~Da~~l~~~~~~~FD 177 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-----VSNAIVTNHAPAELVPHFSGFFD 177 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-----CSSEEEECCCHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhhhccccCC
Confidence 45688999999999999999998765 4799999999999999998874322 24699999999987 3467999
Q ss_pred EEEEcCCCCC-CCCCC-----------------CCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SLLSE-----------------LEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~~~~-----------------l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|++|++-.. ++... -...++++.+.+.|||||.|++...+..
T Consensus 178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 9999975321 11100 0113789999999999999998877654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=110.81 Aligned_cols=114 Identities=17% Similarity=0.084 Sum_probs=87.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~y 150 (269)
.+..+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++..+.. .++++++.+|+.++ . ...+|
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~----~~~v~~~~~d~~~~~~~~~~~~~~f 290 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQKKGEKF 290 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEECCHHHHHHHHHhhCCCC
Confidence 36889999999999999999984 445999999999999999998854431 23799999999886 2 26789
Q ss_pred eEEEEcCCCCCCCCCC-----CCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILVDLFSKGSLLSE-----LEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~-----l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|+|++|.+........ -...+++..+.+.|+|||++++...+..
T Consensus 291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 9999986432110001 1124788999999999999988776653
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-12 Score=109.13 Aligned_cols=114 Identities=11% Similarity=0.007 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-------------cCC-----------C
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-------------KSY-----------P 131 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-------------~~~-----------~ 131 (269)
.++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...... ... .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4578999999999999998887433 59999999999999999987422100 000 0
Q ss_pred CcE-EEEEcccccc-c-cC---CCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEec
Q 035593 132 DRL-FVYVGNALKA-S-LK---DGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 132 ~rv-~~~~~D~~~~-~-~~---~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.++ +++.+|+.+. . .. ++||+|++...-. ..+++. ....++++++++|+|||.+++...
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD-AACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH-HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhh-hhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 127 9999999876 2 34 7899999753211 011111 235899999999999999988653
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.9e-11 Score=98.45 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.++.+|||||||+|..+..+++. +.+++++|+++.+++.|++.+ .+++.+|+.++ ...++||+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL------------DHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS------------SEEEESCTTTCCCCSCTTCEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC------------CcEEEcchhhcCCCCCCCccCE
Confidence 46889999999999999999985 489999999999999998764 26788898764 34578999
Q ss_pred EEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++... ..++ ...++++.+++.|+|||.+++....
T Consensus 97 v~~~~~-----l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 97 VIFGDV-----LEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEEESC-----GGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred EEECCh-----hhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 997522 1111 2368999999999999999997754
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-11 Score=111.15 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=88.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-cCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-LKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~yD~I 153 (269)
+..+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++.... -.+++++.+|+..+ . ..+.||+|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-----~~nv~~~~~D~~~~~~~~~~~fD~I 191 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG-----ISNVALTHFDGRVFGAAVPEMFDAI 191 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-----CCSEEEECCCSTTHHHHSTTCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCCHHHhhhhccccCCEE
Confidence 778999999999999999999875 5799999999999999998874222 24699999999987 2 56789999
Q ss_pred EEcCCCCC-CC----CCC--CC-----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 154 LVDLFSKG-SL----LSE--LE-----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 154 ~~d~~~~~-~~----~~~--l~-----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
++|++-.. +. +.. .. ..++++.+.+.|||||+|++...+..
T Consensus 192 l~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 192 LLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp EEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred EECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 99975321 11 111 11 24789999999999999998876553
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=108.84 Aligned_cols=105 Identities=18% Similarity=0.150 Sum_probs=82.4
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCC
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLF 158 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~ 158 (269)
.+|||||||+|..+..+++.+|+.+++++|+ |.+++.|++++..... .++++++.+|+.+. .++.||+|++...
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~-~~~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA----GERVSLVGGDMLQE-VPSNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH----TTSEEEEESCTTTC-CCSSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC----CCcEEEecCCCCCC-CCCCCCEEEEchh
Confidence 8999999999999999999999999999999 9999999998642211 35899999999773 3467999997532
Q ss_pred CCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 159 SKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 159 ~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
-+. .+. -....+++++++.|+|||.+++.-.
T Consensus 243 l~~-~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 243 IGD-LDE-AASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp GGG-CCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred ccC-CCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 211 010 0123899999999999999988754
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.3e-11 Score=108.08 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=88.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---cCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---LKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~~~~yD 151 (269)
..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.+++++.... -+++++.+|+.... ..++||
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g------~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG------MKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT------CCCEEEECCTTCTHHHHTTCCEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC------CCeEEEeCchhhchhhcccCCCC
Confidence 356789999999999999999998888899999999999999999874321 24789999998872 346899
Q ss_pred EEEEcCCCCC-CCCCCC-----------------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SLLSEL-----------------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~~~~l-----------------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|++|++-.. +...+. ...++++.+.+.|||||.+++...+..
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999975331 111100 014789999999999999999876553
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.1e-12 Score=108.35 Aligned_cols=132 Identities=15% Similarity=0.076 Sum_probs=90.1
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE--EccccccccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY--VGNALKASLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~--~~D~~~~~~~~~yD 151 (269)
.+.+..+|||||||+|.++..++++ .+|++||+++ |+..+++.. ... ...+.+++++ .+|+.++. +++||
T Consensus 79 ~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~-~~~--~~~~~~v~~~~~~~D~~~l~-~~~fD 150 (276)
T 2wa2_A 79 GVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKP-RLV--ETFGWNLITFKSKVDVTKME-PFQAD 150 (276)
T ss_dssp SCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCC-CCC--CCTTGGGEEEECSCCGGGCC-CCCCS
T ss_pred CCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhch-hhh--hhcCCCeEEEeccCcHhhCC-CCCcC
Confidence 4557889999999999999999885 6899999999 543332221 100 0001268999 89998864 57899
Q ss_pred EEEEcCCCCCCCCCC-CC---cHHHHHHHHhhccCCc--EEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEE
Q 035593 152 GILVDLFSKGSLLSE-LE---DPNTWEKLRQCLRKGG--RIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYV 225 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~-l~---~~e~~~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~ 225 (269)
+|++|.. . ....+ .. ...+++.+.+.|+||| .+++.++.+. .......++.+++.|+ .+.+
T Consensus 151 ~Vvsd~~-~-~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~----------~~~~~~~l~~l~~~f~-~v~v 217 (276)
T 2wa2_A 151 TVLCDIG-E-SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY----------SCDVLEALMKMQARFG-GGLI 217 (276)
T ss_dssp EEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC----------SHHHHHHHHHHHHHHC-CEEE
T ss_pred EEEECCC-c-CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC----------chhHHHHHHHHHHHcC-CEEE
Confidence 9999865 2 11111 00 1137899999999999 9999887642 1223466778889996 4544
Q ss_pred E
Q 035593 226 L 226 (269)
Q Consensus 226 ~ 226 (269)
.
T Consensus 218 ~ 218 (276)
T 2wa2_A 218 R 218 (276)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=111.14 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCc-------ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc-
Q 035593 76 LPPGPIGILGFG-------AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL- 146 (269)
Q Consensus 76 ~~~~~VL~iG~G-------~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~- 146 (269)
.++.+||||||| +|.....+.+.+|+.+|++||+++.|. .. .++++++++|+.+. ..
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~~--------~~rI~fv~GDa~dlpf~~ 280 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------VD--------ELRIRTIQGDQNDAEFLD 280 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------GC--------BTTEEEEECCTTCHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------hc--------CCCcEEEEecccccchhh
Confidence 457899999999 455444554556899999999999972 11 36899999999885 22
Q ss_pred -----CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 -----KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 -----~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.++||+|++|.. + .. -....+|++++++|||||++++.-.
T Consensus 281 ~l~~~d~sFDlVisdgs-H--~~--~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 281 RIARRYGPFDIVIDDGS-H--IN--AHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp HHHHHHCCEEEEEECSC-C--CH--HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred hhhcccCCccEEEECCc-c--cc--hhHHHHHHHHHHhcCCCeEEEEEec
Confidence 579999998743 1 11 1135899999999999999999643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=107.52 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=89.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--c-CCCe
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--L-KDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~-~~~y 150 (269)
..++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.+++++...+ -++++++.+|+..+. . .++|
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-----IKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCTTCCSSSSCSSCE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEEEcChhhcchhhccCCC
Confidence 456789999999999999999998876 799999999999999998864221 246999999998872 2 2689
Q ss_pred eEEEEcCCCCC-CCCC---CC--------------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILVDLFSKG-SLLS---EL--------------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~d~~~~~-~~~~---~l--------------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|+|++|++... +... .. ...++++.+.+.|||||.+++...+..
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99999965431 1110 00 015789999999999999998776654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=105.90 Aligned_cols=133 Identities=17% Similarity=0.075 Sum_probs=90.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE--EccccccccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY--VGNALKASLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~--~~D~~~~~~~~~yD 151 (269)
.+.+..+|||||||+|.++..++++ .+|++||+++ ++..+++. .... ...+.+++++ .+|+.++. +++||
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~-~~~~--~~~~~~v~~~~~~~D~~~l~-~~~fD 142 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV-PRIT--ESYGWNIVKFKSRVDIHTLP-VERTD 142 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC-CCCC--CBTTGGGEEEECSCCTTTSC-CCCCS
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh-hhhh--hccCCCeEEEecccCHhHCC-CCCCc
Confidence 4557889999999999999999884 6899999999 53322221 1100 0001268889 89998865 57899
Q ss_pred EEEEcCCCCCCCCCC-CC---cHHHHHHHHhhccCCc--EEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEE
Q 035593 152 GILVDLFSKGSLLSE-LE---DPNTWEKLRQCLRKGG--RIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYV 225 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~-l~---~~e~~~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~ 225 (269)
+|++|.. . ....+ +. ...+++.+.+.|+||| .|++.++.+. .......+..+++.|+ .+.+
T Consensus 143 ~V~sd~~-~-~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~----------~~~~~~~l~~l~~~f~-~v~~ 209 (265)
T 2oxt_A 143 VIMCDVG-E-SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPY----------SVEVMERLSVMQRKWG-GGLV 209 (265)
T ss_dssp EEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTT----------SHHHHHHHHHHHHHHC-CEEE
T ss_pred EEEEeCc-c-cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC----------ChhHHHHHHHHHHHcC-CEEE
Confidence 9999865 2 11111 10 1137899999999999 9999887642 1223467788889996 4555
Q ss_pred EE
Q 035593 226 LS 227 (269)
Q Consensus 226 ~~ 227 (269)
.+
T Consensus 210 ~k 211 (265)
T 2oxt_A 210 RN 211 (265)
T ss_dssp CC
T ss_pred EE
Confidence 54
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-10 Score=90.67 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||+|||+|.++..+++. ...+|+++|+|+.+++.|++++.... -+++++.+|+.++ +.+||+|++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~--~~~~D~v~~ 118 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFK------GKFKVFIGDVSEF--NSRVDIVIM 118 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGT------TSEEEEESCGGGC--CCCCSEEEE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC------CCEEEEECchHHc--CCCCCEEEE
Confidence 46789999999999999999885 34589999999999999999875432 2799999999886 348999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|.+-... ..-....+++.+.+.| ||++++.
T Consensus 119 ~~p~~~~--~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 119 NPPFGSQ--RKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp CCCCSSS--STTTTHHHHHHHHHHC--SEEEEEE
T ss_pred cCCCccc--cCCchHHHHHHHHHhc--CcEEEEE
Confidence 8643211 1123468999999998 6666554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=116.56 Aligned_cols=114 Identities=16% Similarity=0.060 Sum_probs=86.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.+.++|||+|||+|.++..+++. ...+|++||+|+.+++.|++++..+.. ...+++++++|+.++ ...++||+|
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl---~~~~v~~i~~D~~~~l~~~~~~fD~I 613 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGL---TGRAHRLIQADCLAWLREANEQFDLI 613 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC---CSTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHhcCCCccEE
Confidence 36789999999999999998873 344799999999999999999865431 125899999999987 446789999
Q ss_pred EEcCCCCCCCC--CCC-----CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLL--SEL-----EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~--~~l-----~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++|++.-.... ... ...++++.+.+.|+|||+|++.+...
T Consensus 614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 99875321000 001 12467889999999999999877653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=113.56 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=82.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCcccc-ccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKL-EKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~-~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
++.+|||||||+|.++..+++.. +..+|++||+++.+++.|++++..... .....++++++++|+.++ ...+.||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 67899999999999999999876 457999999999999999985421100 000135799999999988 556789999
Q ss_pred EEcCCCCCCCCCCCCcH---HHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDP---NTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~---e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++.. ...|+... .+++.+++.|+|| .+++...
T Consensus 801 V~~e-----VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 801 TCLE-----VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEES-----CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEeC-----chhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 9742 23344333 5899999999998 6666553
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=103.96 Aligned_cols=107 Identities=20% Similarity=0.256 Sum_probs=82.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+..+|||||||+|..+..+++++|+.++++.|+ |.+++.|+++..... .+|++++.+|+++- ....+|+|++
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-----~~rv~~~~gD~~~~-~~~~~D~~~~ 250 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-----EEQIDFQEGDFFKD-PLPEADLYIL 250 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTS-CCCCCSEEEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-----cCceeeecCccccC-CCCCceEEEe
Confidence 3467999999999999999999999999999998 999999999876432 57999999998754 3346899987
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
--.-+.. +. -....+++++++.|+|||.+++.-.
T Consensus 251 ~~vlh~~-~d-~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 251 ARVLHDW-AD-GKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp ESSGGGS-CH-HHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred eeecccC-CH-HHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 4222211 10 0124789999999999998877543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-12 Score=108.16 Aligned_cols=113 Identities=13% Similarity=0.022 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCcccccc-------------C-----------C
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEK-------------S-----------Y 130 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~-------------~-----------~ 130 (269)
.+..+|||||||+|.++..++. ++. +|+++|+|+.|++.|++++....... . .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~--~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAAC--DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGG--GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHH--hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4578999999999988776655 343 79999999999999998763210000 0 0
Q ss_pred CCcEE-EEEcccccc-c----cCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEec
Q 035593 131 PDRLF-VYVGNALKA-S----LKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 131 ~~rv~-~~~~D~~~~-~----~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+++ ++.+|..+. . ..++||+|++...-+ ...+.. ....+++++++.|||||.|++...
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~-~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME-CACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH-HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHH-HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 01344 889998874 1 246899999753211 011111 124789999999999999998753
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-11 Score=105.80 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=89.1
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEEC----ChHHHHHHHHhcCccccccCCCCcEEEEEc-cccccccC
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWEL----DPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKASLK 147 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEi----dp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~~~~ 147 (269)
..+.+..+|||||||+|.++..++++ .+|++||+ ++.+++.+ .... ...++++++.+ |+..+. .
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~----~~~~---~~~~~v~~~~~~D~~~l~-~ 146 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI----PMST---YGWNLVRLQSGVDVFFIP-P 146 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC----CCCS---TTGGGEEEECSCCTTTSC-C
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH----Hhhh---cCCCCeEEEeccccccCC-c
Confidence 34556789999999999999999985 58999999 55433211 1110 00257999999 887763 4
Q ss_pred CCeeEEEEcCCCCCCCCCCCC----cHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCce
Q 035593 148 DGFSGILVDLFSKGSLLSELE----DPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKL 223 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~----~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v 223 (269)
++||+|++|.... ...... ...+++.+.+.|+|||.|++.++.+. ......++..++..|. .+
T Consensus 147 ~~fD~V~sd~~~~--~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~----------~~~~~~~l~~l~~~f~-~v 213 (305)
T 2p41_A 147 ERCDTLLCDIGES--SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY----------MSSVIEKMEALQRKHG-GA 213 (305)
T ss_dssp CCCSEEEECCCCC--CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC----------SHHHHHHHHHHHHHHC-CE
T ss_pred CCCCEEEECCccc--cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCC----------CchHHHHHHHHHHHcC-CE
Confidence 6899999986532 111110 11578889999999999999887552 1234577788888996 45
Q ss_pred EEE
Q 035593 224 YVL 226 (269)
Q Consensus 224 ~~~ 226 (269)
...
T Consensus 214 ~~~ 216 (305)
T 2p41_A 214 LVR 216 (305)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-11 Score=108.28 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=85.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCc-EEEEEcccccc-c-c-CCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDR-LFVYVGNALKA-S-L-KDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~r-v~~~~~D~~~~-~-~-~~~yD 151 (269)
+..+|||++||+|..+..++++.++ .+|++||+|+..++.+++++..+.. ..+ ++++.+|+.++ . . .++||
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl----~~~~v~v~~~Da~~~l~~~~~~~fD 127 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI----PEDRYEIHGMEANFFLRKEWGFGFD 127 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC----CGGGEEEECSCHHHHHHSCCSSCEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCceEEEEeCCHHHHHHHhhCCCCc
Confidence 4679999999999999999987655 6999999999999999999865542 235 99999999887 3 2 45899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|++|++.. ..++++.+.+.|++||++.+.+.
T Consensus 128 ~V~lDP~g~--------~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 128 YVDLDPFGT--------PVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp EEEECCSSC--------CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEECCCcC--------HHHHHHHHHHHhCCCCEEEEEec
Confidence 999998532 35799999999999999988763
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=101.02 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=77.2
Q ss_pred CCCcEEEEcCcccH----HHHHHHHHCC----CceEEEEECChHHHHHHHHhcC-------ccc----------------
Q 035593 77 PPGPIGILGFGAGS----AARLILDLYP----EAVIHGWELDPSVIKVAREFFA-------LEK---------------- 125 (269)
Q Consensus 77 ~~~~VL~iG~G~G~----~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~~-------~~~---------------- 125 (269)
++.+||++|||+|. ++..+++..+ +.+|+++|||++|++.|++..- +++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 6667776544 4699999999999999998641 000
Q ss_pred -ccc--CCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEE
Q 035593 126 -LEK--SYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 126 -~~~--~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+.. .-..++++..+|..+. ...++||+|++- .+..++. ...+++.+++.|+|||.|++-
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~cr-----nvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCR-----NVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEEC-----SSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEEC-----CchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 000 0013699999999874 224689999982 1112222 258999999999999999873
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-10 Score=94.13 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
+.++++||++|+| ..+.++++ .++.+|++||.|++..+.|++++...+.. ...+++++.+|+.+.
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~--~~~~I~~~~gda~~~~~wg~p~~~~ 102 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPA--EGTEVNIVWTDIGPTGDWGHPVSDA 102 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCC--TTCEEEEEECCCSSBCGGGCBSSST
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCCceEEEEeCchhhhcccccccch
Confidence 3468899999984 67777776 35789999999999999999998533210 035899999996531
Q ss_pred -------------c--cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 145 -------------S--LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 145 -------------~--~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
. ..++||+||+|+.. ...++..+.+.|+|||++++
T Consensus 103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k---------~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRF---------RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp TGGGTTHHHHGGGGCTTCCCCSEEEECSSS---------HHHHHHHHHHHCSSCEEEEE
T ss_pred hhhhHHHHhhhhhccccCCCCCEEEEeCCC---------chhHHHHHHHhcCCCeEEEE
Confidence 0 12689999999742 24777888899999999988
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=105.86 Aligned_cols=120 Identities=15% Similarity=0.005 Sum_probs=84.9
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
....|.... ..+..+|||+|||+|.++..++...+..+|+++|+|+.+++.|++++..... .++++++++|+.++
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl----~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV----LDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC----GGGCEEEECCGGGG
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEECChhhC
Confidence 344443332 5578899999999999999999866556999999999999999998743321 24799999999998
Q ss_pred -ccCCCeeEEEEcCCCCCCCCC--CC--CcHHHHHHHHhhccCCcEEEEEec
Q 035593 145 -SLKDGFSGILVDLFSKGSLLS--EL--EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~--~l--~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...++||+|++|.+-...... .+ ...++++.+++.| +|.+++-..
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 445789999998643211111 11 0156788888888 555554443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-10 Score=98.42 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=77.6
Q ss_pred CCcEEEEcCcc---cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----c--C
Q 035593 78 PGPIGILGFGA---GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS-----L--K 147 (269)
Q Consensus 78 ~~~VL~iG~G~---G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~-----~--~ 147 (269)
..+|||||||. |.+...+.+..|+.+|++||.||.|++.||+.+.-.. ..+++++++|+++.. . .
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-----~~~~~~v~aD~~~~~~~l~~~~~~ 153 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-----EGRTAYVEADMLDPASILDAPELR 153 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-----SSEEEEEECCTTCHHHHHTCHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-----CCcEEEEEecccChhhhhcccccc
Confidence 46899999996 3344444455799999999999999999999875321 247999999998751 1 3
Q ss_pred CCee-----EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 148 DGFS-----GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 148 ~~yD-----~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+.|| +|++...-+ .++.+-.....++.+++.|+|||+|++.....
T Consensus 154 ~~~D~~~p~av~~~avLH-~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 154 DTLDLTRPVALTVIAIVH-FVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp TTCCTTSCCEEEEESCGG-GSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred cccCcCCcchHHhhhhHh-cCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 4565 455543222 12221112479999999999999999987654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=103.54 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|..+..+++++|+.+++++|+ +.++. +++..... ..++++++.+|+.+..+ .||+|+
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~----~~~~v~~~~~d~~~~~p--~~D~v~ 252 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD----VAGRWKVVEGDFLREVP--HADVHV 252 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG----GTTSEEEEECCTTTCCC--CCSEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC----CCCCeEEEecCCCCCCC--CCcEEE
Confidence 34578999999999999999999999999999999 55655 33332211 14689999999974333 899999
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+...- .++.. ..+++++++.|||||.+++.-.
T Consensus 253 ~~~vl-----h~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 253 LKRIL-----HNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp EESCG-----GGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred Eehhc-----cCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 74321 12222 4899999999999999988654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=94.01 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++. +++++.+|+.++. ++||+|++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~~d~~~~~--~~~D~v~~ 116 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSEIS--GKYDTWIM 116 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGGCC--CCEEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC----------CCEEEECcHHHCC--CCeeEEEE
Confidence 35789999999999999999885 44589999999999999999863 5899999998863 68999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+..-+. . ..-...++++.+.+.| |+++++
T Consensus 117 ~~p~~~-~-~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 117 NPPFGS-V-VKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp CCCC---------CHHHHHHHHHHE--EEEEEE
T ss_pred CCCchh-c-cCchhHHHHHHHHHhc--CcEEEE
Confidence 854321 1 1112468999999998 444433
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=101.61 Aligned_cols=95 Identities=14% Similarity=0.003 Sum_probs=71.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-ccccccc----cCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKAS----LKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~~----~~~~yD 151 (269)
+..+|||||||+|.++..++++ +..+|++||+++.|++.+.+. ++++.... .|++... ....||
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~----------~~rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ----------DDRVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT----------CTTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh----------CcccceecccCceecchhhCCCCCCC
Confidence 5679999999999999999884 456999999999999986553 24554432 3554441 223499
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|++|..-. ....++.++++.|+|||.+++-
T Consensus 154 ~v~~d~sf~-------sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 154 FASIDVSFI-------SLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp EEEECCSSS-------CGGGTHHHHHHHSCTTCEEEEE
T ss_pred EEEEEeeHh-------hHHHHHHHHHHHcCcCCEEEEE
Confidence 999986422 1367999999999999999885
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.13 E-value=9.2e-11 Score=97.88 Aligned_cols=94 Identities=22% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||||||+|.++..+++. +++|+++.+++.|++. +++++.+|+.+. ...++||+|++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD~v~~ 108 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDFALM 108 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc------------CCEEEEcccccCCCCCCCeeEEEE
Confidence 4889999999999999988652 9999999999999886 268889998877 45578999997
Q ss_pred cCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...- .++ ...++++.+++.|+|||.+++.....
T Consensus 109 ~~~l-----~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 109 VTTI-----CFVDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp ESCG-----GGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cchH-----hhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 5321 111 23689999999999999999876543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-11 Score=106.18 Aligned_cols=111 Identities=10% Similarity=0.002 Sum_probs=74.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc----c---------ccCC------------C
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK----L---------EKSY------------P 131 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~----~---------~~~~------------~ 131 (269)
++.+|||||||+|..+..++. .+..+|+++|+++.|++.|++++.... | .... .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 578999999999995544433 346799999999999999998653210 0 0000 0
Q ss_pred CcEEEEEcccccc-c------cCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEE
Q 035593 132 DRLFVYVGNALKA-S------LKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 132 ~rv~~~~~D~~~~-~------~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..++++.+|+.+. . .+++||+|++...-. ...+.+ ....+++++++.|||||.|++.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~-~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLE-AVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHH-HHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhh-hhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1267788898873 1 235699999753211 011111 2368999999999999999885
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-11 Score=109.15 Aligned_cols=103 Identities=18% Similarity=0.100 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||||+|.++..++++ +.+|+++|+++.+++.|++. +.+. ....+..+++..+ ...++||+|
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~------~~~~~~~~~~~~l~~~~~~fD~I 175 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRV------RTDFFEKATADDVRRTEGPANVI 175 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCE------ECSCCSHHHHHHHHHHHCCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCc------ceeeechhhHhhcccCCCCEEEE
Confidence 456789999999999999999984 66999999999999999987 3221 0011122333333 346899999
Q ss_pred EEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++... ..|+ ...++++++++.|+|||++++...
T Consensus 176 ~~~~v-----l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 176 YAANT-----LCHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp EEESC-----GGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCh-----HHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 97532 1222 346999999999999999999764
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-10 Score=97.85 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=87.8
Q ss_pred CCCCCCcEEEEcCcc------cHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEE-EEccccccc
Q 035593 74 PILPPGPIGILGFGA------GSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFV-YVGNALKAS 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~------G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~-~~~D~~~~~ 145 (269)
.+.+..+|||||||+ |+ ..+++..+ +.+|++||++|. + +++++ +++|+.+..
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~----------v--------~~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF----------V--------SDADSTLIGDCATVH 119 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC----------B--------CSSSEEEESCGGGCC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC----------C--------CCCEEEEECccccCC
Confidence 355678999999944 76 44555566 689999999997 1 14677 999998874
Q ss_pred cCCCeeEEEEcCCCCCC---CCCCC----CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 146 LKDGFSGILVDLFSKGS---LLSEL----EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~---~~~~l----~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
..++||+|++|...+.. ...+. ...++++.+++.|||||.|++..+.... ...+.+.+++.
T Consensus 120 ~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~------------~~~l~~~l~~~ 187 (290)
T 2xyq_A 120 TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW------------NADLYKLMGHF 187 (290)
T ss_dssp CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC------------CHHHHHHHTTE
T ss_pred ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC------------HHHHHHHHHHc
Confidence 45789999998653211 01111 1247899999999999999998765421 12455666666
Q ss_pred -hcCceEEEEc-CCCCceEEEEec
Q 035593 219 -FGKKLYVLSL-GNRKDDSLIALT 240 (269)
Q Consensus 219 -F~~~v~~~~~-~~~~n~v~~~~~ 240 (269)
|. .+..... ..+...++++..
T Consensus 188 GF~-~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 188 SWW-TAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp EEE-EEEEEGGGTTSSCEEEEEEE
T ss_pred CCc-EEEEEEcCCCchheEEecCC
Confidence 64 3444321 233344555543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-10 Score=102.94 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++..+. -. ++++.+|+.++... +||+|+
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ng-----l~-v~~~~~d~~~~~~~-~fD~Vv 358 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINN-----VD-AEFEVASDREVSVK-GFDTVI 358 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT-----CC-EEEEECCTTTCCCT-TCSEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECChHHcCcc-CCCEEE
Confidence 456789999999999999999884 5699999999999999999875432 23 99999999987333 899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|..... ...++++.+. .|+|+|++.+.+
T Consensus 359 ~dPPr~g------~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 359 VDPPRAG------LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp ECCCTTC------SCHHHHHHHH-HHCCSEEEEEES
T ss_pred EcCCccc------hHHHHHHHHH-hcCCCcEEEEEC
Confidence 9864321 1346777775 499999998876
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=104.12 Aligned_cols=97 Identities=16% Similarity=0.256 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|..+..+++++|+.+++++|+ |.+++.|++. ++++++.+|+.+. .+. ||+|+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~-~~~-~D~v~ 272 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----------SGIEHVGGDMFAS-VPQ-GDAMI 272 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTTC-CCC-EEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----------CCCEEEeCCcccC-CCC-CCEEE
Confidence 45678999999999999999999999999999999 9999877642 3699999999773 233 99999
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+...- .++.. ..+++++++.|+|||.+++.-
T Consensus 273 ~~~~l-----h~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 273 LKAVC-----HNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp EESSG-----GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eeccc-----ccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 74321 12222 389999999999999988763
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.1e-10 Score=96.43 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEEC-ChHHHHHHHHhc-----CccccccCCCCcEEEEEcccccc----
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWEL-DPSVIKVAREFF-----ALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEi-dp~~~~~a~~~~-----~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
..++.+|||||||+|.++..+++. ...+|+++|+ ++.+++.|+++. ..........++++++..|..+.
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 346789999999999999988874 3449999999 899999999987 22110000014688886664432
Q ss_pred c---cCCCeeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhcc---C--CcEEEEEec
Q 035593 145 S---LKDGFSGILV-DLFSKGSLLSELEDPNTWEKLRQCLR---K--GGRIMVNVG 191 (269)
Q Consensus 145 ~---~~~~yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~---p--gG~l~~~~~ 191 (269)
. ..++||+|++ |+... .-....+++.+++.|+ | ||++++.+.
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~-----~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSF-----HQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSC-----GGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred HhhccCCCCCEEEEeCcccC-----hHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 1 3578999986 43321 1114689999999999 9 998776543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=103.21 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|..+..+++.+|+.+++++|+ |.+++.|++ .++++++.+|+.+- .+.. |+|+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~-~p~~-D~v~ 264 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFKE-VPSG-DTIL 264 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTC-CCCC-SEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCCC-CCCC-CEEE
Confidence 45678999999999999999999999999999999 998877653 25799999999873 2233 9998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+...-+. .+. -....++++++++|+|||.+++.-.
T Consensus 265 ~~~vlh~-~~d-~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 265 MKWILHD-WSD-QHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp EESCGGG-SCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred ehHHhcc-CCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 7432211 000 0124789999999999999988654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=102.60 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|..+..+++++|+.+++++|+ |.+++.|++. ++++++.+|+.+. .+ .||+|+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~-~p-~~D~v~ 251 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----------NNLTYVGGDMFTS-IP-NADAVL 251 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----------TTEEEEECCTTTC-CC-CCSEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----------CCcEEEeccccCC-CC-CccEEE
Confidence 34578999999999999999999999999999999 9999887652 2499999998763 22 499999
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccC---CcEEEEEec
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRK---GGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~p---gG~l~~~~~ 191 (269)
+...-+ ++.. ..+++++++.|+| ||.+++...
T Consensus 252 ~~~~lh-----~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 252 LKYILH-----NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp EESCGG-----GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred eehhhc-----cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 743211 1212 3899999999999 999887653
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-10 Score=103.10 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|..+..+++.+|+.+++++|+ |.+++.|++ .++++++.+|+.+-.+ .. |+|+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~p-~~-D~v~ 266 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFDGVP-KG-DAIF 266 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC-CC-SEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCCCCC-CC-CEEE
Confidence 44578999999999999999999999999999999 999877653 2579999999986322 23 9998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+...-+. .+. -....++++++++|+|||.+++.-.
T Consensus 267 ~~~vlh~-~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 267 IKWICHD-WSD-EHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp EESCGGG-BCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred Eechhhc-CCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 7432211 000 0124789999999999999888654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-10 Score=96.85 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=67.0
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||+|.++..+++. +.+|++||+|+.+++.+++++.... ..++++++.+|+.++
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP----VASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEESCTTTS
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcceecc
Confidence 3444443323457889999999999999999986 4699999999999999999874321 025799999999876
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
.. ..||+|++++.
T Consensus 90 ~~-~~fD~vv~nlp 102 (285)
T 1zq9_A 90 DL-PFFDTCVANLP 102 (285)
T ss_dssp CC-CCCSEEEEECC
T ss_pred cc-hhhcEEEEecC
Confidence 32 27999998653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.7e-10 Score=93.27 Aligned_cols=103 Identities=15% Similarity=0.046 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||||||.|.++..+. +..+++++|||+.+++.+++++... ..+.++.++|...-..+++||+|++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~------g~~~~~~v~D~~~~~~~~~~DvvLl 174 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK------DWDFTFALQDVLCAPPAEAGDLALI 174 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT------TCEEEEEECCTTTSCCCCBCSEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc------CCCceEEEeecccCCCCCCcchHHH
Confidence 568999999999999999876 7899999999999999999997543 3678999999987766779999986
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...-+ ...+......+ ++.+.|+++|+++ ++.
T Consensus 175 lk~lh--~LE~q~~~~~~-~ll~aL~~~~vvV-sfP 206 (253)
T 3frh_A 175 FKLLP--LLEREQAGSAM-ALLQSLNTPRMAV-SFP 206 (253)
T ss_dssp ESCHH--HHHHHSTTHHH-HHHHHCBCSEEEE-EEE
T ss_pred HHHHH--HhhhhchhhHH-HHHHHhcCCCEEE-EcC
Confidence 42111 01111123445 7778999987664 443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=98.74 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=81.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||||||.|-++..+....|..+++++|||+.+++++++++... ..+.++.+.|...-..+++||+|+
T Consensus 130 i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~------g~~~~~~v~D~~~~~p~~~~DvaL 203 (281)
T 3lcv_B 130 LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL------NVPHRTNVADLLEDRLDEPADVTL 203 (281)
T ss_dssp SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT------TCCEEEEECCTTTSCCCSCCSEEE
T ss_pred cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc------CCCceEEEeeecccCCCCCcchHH
Confidence 34688999999999999999988778999999999999999999998543 245888999987777788999998
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~ 188 (269)
+.. ..++|.. ...| ++.+.|+++|+++-
T Consensus 204 ~lk-----ti~~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 204 LLK-----TLPCLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp ETT-----CHHHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred HHH-----HHHHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 742 1222211 2456 89999999888764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=94.98 Aligned_cols=106 Identities=13% Similarity=0.038 Sum_probs=71.3
Q ss_pred HHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc-
Q 035593 67 DAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA- 144 (269)
Q Consensus 67 ~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~- 144 (269)
+.+..+..-.++.+|||||||+|.++..+++. ...+|++||+++.|++.|++... ++..... +.+..
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~----------~~~~~~~~~~~~~~ 95 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE----------RVVVMEQFNFRNAV 95 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT----------TEEEECSCCGGGCC
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc----------cccccccceEEEeC
Confidence 33434433234679999999999999999985 33599999999999999887532 2332211 22211
Q ss_pred ---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 ---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.....||.+.+|..-.. ...+++++++.|||||.+++.+
T Consensus 96 ~~~~~~~~~d~~~~D~v~~~-------l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 96 LADFEQGRPSFTSIDVSFIS-------LDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp GGGCCSCCCSEEEECCSSSC-------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred HhHcCcCCCCEEEEEEEhhh-------HHHHHHHHHHhccCCCEEEEEE
Confidence 11123677766643211 2679999999999999998864
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-10 Score=103.49 Aligned_cols=114 Identities=18% Similarity=0.083 Sum_probs=83.6
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
..+.|+......++.+|||+|||+|.++..+++++ +..+|+++|+|+.+++.| .+++++++|+.+
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------~~~~~~~~D~~~ 92 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGILADFLL 92 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEEESCGGG
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------CCCcEEeCChhh
Confidence 34445432222346799999999999999999876 578999999999998766 258999999998
Q ss_pred cccCCCeeEEEEcCCCCCCCC-CC----C--------------------CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 144 ASLKDGFSGILVDLFSKGSLL-SE----L--------------------EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~-~~----l--------------------~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...++||+|+++.+-..... .+ + ....|++.+.+.|+|||.+++-+..
T Consensus 93 ~~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 93 WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 855678999999743221100 00 1 0127899999999999999887754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=99.72 Aligned_cols=124 Identities=11% Similarity=0.039 Sum_probs=89.2
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCC--------------------------------------ceEE
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPE--------------------------------------AVIH 105 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~--------------------------------------~~v~ 105 (269)
.....|+.+....+...+||.+||+|+++.+++....+ .+|+
T Consensus 181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 34444543334557789999999999999888764333 5699
Q ss_pred EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccC--C
Q 035593 106 GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRK--G 183 (269)
Q Consensus 106 ~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p--g 183 (269)
++|+|+.+++.|+++....+ ...+++++++|+.++....+||+|++|.+-.......-...++|+.+.+.|++ |
T Consensus 261 GvDid~~al~~Ar~Na~~~g----l~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g 336 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVG----LEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT 336 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTT----CTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred EEECCHHHHHHHHHHHHHcC----CCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999874332 13479999999999855569999999865332222111235788888888877 8
Q ss_pred cEEEEEec
Q 035593 184 GRIMVNVG 191 (269)
Q Consensus 184 G~l~~~~~ 191 (269)
|.+.+-..
T Consensus 337 ~~~~iit~ 344 (384)
T 3ldg_A 337 WSQFILTN 344 (384)
T ss_dssp SEEEEEES
T ss_pred cEEEEEEC
Confidence 88777654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=95.83 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=68.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.|+....+.+..+|||||||+|.++..+++. +.+|++||+|+.+++.+++++. . .++++++++|+.++
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~--~-----~~~v~vi~gD~l~~ 108 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE--L-----YNNIEIIWGDALKV 108 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH--H-----CSSEEEEESCTTTS
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc--c-----CCCeEEEECchhhC
Confidence 4455544334567889999999999999999986 6799999999999999999875 1 35799999999987
Q ss_pred -ccCCCeeEEEEcC
Q 035593 145 -SLKDGFSGILVDL 157 (269)
Q Consensus 145 -~~~~~yD~I~~d~ 157 (269)
.....||+|+.++
T Consensus 109 ~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 109 DLNKLDFNKVVANL 122 (295)
T ss_dssp CGGGSCCSEEEEEC
T ss_pred CcccCCccEEEEeC
Confidence 4445799999764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-09 Score=101.17 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~ 149 (269)
+.+..+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++..+. -.+++++.+|+.+. . ..++
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCTTSCCSSSGGGTTC
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEECCHHHHhhhhhhhcCC
Confidence 345789999999999999999984 6799999999999999999875432 24799999999885 1 3468
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
||+|++|..-.. ..++++.+.+ ++|++++.+.+
T Consensus 357 fD~Vv~dPPr~g-------~~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 357 FDKVLLDPARAG-------AAGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CSEEEECCCTTC-------CHHHHHHHHH-HCCSEEEEEES
T ss_pred CCEEEECCCCcc-------HHHHHHHHHh-cCCCeEEEEEC
Confidence 999999754321 2466666654 78988887765
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.3e-10 Score=101.66 Aligned_cols=124 Identities=18% Similarity=0.135 Sum_probs=88.0
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCC--------------------------------------ceEE
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPE--------------------------------------AVIH 105 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~--------------------------------------~~v~ 105 (269)
.....|+......+..+|||+|||+|.++..++....+ .+|+
T Consensus 182 ~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 182 TLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 34445544444557889999999999999888765322 5799
Q ss_pred EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccC--C
Q 035593 106 GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRK--G 183 (269)
Q Consensus 106 ~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p--g 183 (269)
++|+|+.+++.|++++..... ..++++.++|+.++..+.+||+|++|.+-.......-...++|+.+.+.|++ |
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl----~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g 337 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGV----DEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKN 337 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTC----GGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBS
T ss_pred EEECCHHHHHHHHHHHHHcCC----CCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999998753321 2479999999999855679999999854321111011124688888888877 7
Q ss_pred cEEEEEec
Q 035593 184 GRIMVNVG 191 (269)
Q Consensus 184 G~l~~~~~ 191 (269)
|.+.+-..
T Consensus 338 ~~~~iit~ 345 (385)
T 3ldu_A 338 WSYYLITS 345 (385)
T ss_dssp CEEEEEES
T ss_pred CEEEEEEC
Confidence 77766554
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-10 Score=101.53 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=84.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC-----ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE-----AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~-----~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
+..+|||+|||+|.++..+++..+. .+++++|+|+.++++|+.++.... .+++++++|+......++||
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g------~~~~i~~~D~l~~~~~~~fD 203 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR------QKMTLLHQDGLANLLVDPVD 203 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT------CCCEEEESCTTSCCCCCCEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC------CCceEEECCCCCccccCCcc
Confidence 4579999999999999999887653 799999999999999999865432 25899999987754457899
Q ss_pred EEEEcCCCCCCC------------CCCC--CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 152 GILVDLFSKGSL------------LSEL--EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 152 ~I~~d~~~~~~~------------~~~l--~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+|+++.+-+... .... ....|++.+.+.|+|||++++-+.+.
T Consensus 204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 999986421100 0000 11368999999999999998877443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.5e-10 Score=101.30 Aligned_cols=123 Identities=13% Similarity=0.074 Sum_probs=86.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCC--------------------------------------ceEEE
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPE--------------------------------------AVIHG 106 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~--------------------------------------~~v~~ 106 (269)
....|+.+....+...|||.+||+|+++.+++....+ .+|++
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 3344443334456789999999999999888764332 56999
Q ss_pred EECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccC--Cc
Q 035593 107 WELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRK--GG 184 (269)
Q Consensus 107 vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p--gG 184 (269)
+|+|+.+++.|+++..... ...+++++++|+.++....+||+|++|.+-.......-...++|+.+.+.|++ ||
T Consensus 269 vDid~~al~~Ar~Na~~~g----l~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~ 344 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAG----LGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTW 344 (393)
T ss_dssp EESCHHHHHHHHHHHHHTT----CTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred EECCHHHHHHHHHHHHHcC----CCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCC
Confidence 9999999999999875332 13469999999999855569999999854321111001124678877777776 88
Q ss_pred EEEEEec
Q 035593 185 RIMVNVG 191 (269)
Q Consensus 185 ~l~~~~~ 191 (269)
.+.+-..
T Consensus 345 ~~~iit~ 351 (393)
T 3k0b_A 345 SVYVLTS 351 (393)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 7777554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.6e-10 Score=101.74 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=82.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC-------------CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLY-------------PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~-------------p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
+..+|||.|||+|.++..+.++. +..+++++|+|+.++++|+.++.+... ...+++++++|...
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~---~~~~~~i~~gD~l~ 247 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI---GTDRSPIVCEDSLE 247 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC---CSSCCSEEECCTTT
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC---CcCCCCEeeCCCCC
Confidence 46799999999999998888753 346899999999999999987644321 01257899999887
Q ss_pred cccCCCeeEEEEcCCCCCCC-CC-C-----C------CcHHHHHHHHhhccCCcEEEEEec
Q 035593 144 ASLKDGFSGILVDLFSKGSL-LS-E-----L------EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~-~~-~-----l------~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.....+||+|+.+.+-.... .. . + ....|++.+.+.|+|||.+++-+.
T Consensus 248 ~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 248 KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 74445899999985322111 00 0 0 014899999999999999988763
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.5e-10 Score=99.70 Aligned_cols=99 Identities=15% Similarity=0.030 Sum_probs=75.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cC-------
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LK------- 147 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~------- 147 (269)
+.+|||+|||+|.++..+++. ..+|++||+++.+++.|++++..+. -++++++.+|+.++ . ..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng-----~~~v~~~~~d~~~~~~~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANH-----IDNVQIIRMAAEEFTQAMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTT-----CCSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEECCHHHHHHHHhhccccccc
Confidence 578999999999999998873 4699999999999999999875443 24799999999876 1 11
Q ss_pred -------CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 148 -------DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 148 -------~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+||+|++|.+... +...+.+.|+++|.+++...++
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~g----------~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRSG----------LDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTTC----------CCHHHHHHHTTSSEEEEEESCH
T ss_pred cccccccCCCCEEEECcCccc----------cHHHHHHHHhCCCEEEEEECCH
Confidence 37999999854321 2234555566888887766554
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-09 Score=91.74 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=65.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+. +|||||||+|.++..+++. +.+|++||+|+++++.+++++. ..+++++++|+.++
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~--------~~~v~vi~~D~l~~ 103 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLS--------GLPVRLVFQDALLY 103 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTT--------TSSEEEEESCGGGS
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC--------CCCEEEEECChhhC
Confidence 34444433234567 9999999999999999985 4799999999999999999875 24799999999987
Q ss_pred c--cCCCeeEEEEcCC
Q 035593 145 S--LKDGFSGILVDLF 158 (269)
Q Consensus 145 ~--~~~~yD~I~~d~~ 158 (269)
. ....+|.|+.+++
T Consensus 104 ~~~~~~~~~~iv~NlP 119 (271)
T 3fut_A 104 PWEEVPQGSLLVANLP 119 (271)
T ss_dssp CGGGSCTTEEEEEEEC
T ss_pred ChhhccCccEEEecCc
Confidence 2 2236899998753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.7e-09 Score=86.41 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.++.+|||||||+|.++..+ ..+++++|+++. +++++.+|+.+. ...++||+|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~--------------------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI-----RNPVHCFDLASL--------------------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS--------------------STTEEESCTTSCSCCTTCEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC--------------------CceEEEeccccCCCCCCCEeEEE
Confidence 46789999999999998876 368999999986 145677888776 4567899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...-+ +.....+++.+++.|+|||.+++..+.
T Consensus 121 ~~~~l~-----~~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 121 FCLSLM-----GTNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp EESCCC-----SSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred Eehhcc-----ccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 753322 223579999999999999999987643
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=89.97 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=83.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc----CCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL----KDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~----~~~ 149 (269)
..+..+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++.... -.+++++.+|+.++.. ..+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~~ 174 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCCELAEEDFLAVSPSDPRYHE 174 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGGSCTTCGGGTT
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCChHhcCccccccCC
Confidence 3567899999999999999999865 45799999999999999999874222 2469999999988721 257
Q ss_pred eeEEEEcCCCCC-CCC---CCC----------------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 150 FSGILVDLFSKG-SLL---SEL----------------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 150 yD~I~~d~~~~~-~~~---~~l----------------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
||.|++|+.-.. +.. +.. ...++++.+.+.|+ ||+++....+..
T Consensus 175 fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 175 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred CCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 999999975431 111 000 01246777777776 999998776653
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.8e-09 Score=91.30 Aligned_cols=144 Identities=18% Similarity=0.142 Sum_probs=91.6
Q ss_pred CCcEEEEcCcccHHHHHH----HHHCCCc--eEEEEECChH---------HHHHHHHhcC-ccccccCCCCcEEEEEccc
Q 035593 78 PGPIGILGFGAGSAARLI----LDLYPEA--VIHGWELDPS---------VIKVAREFFA-LEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l----~~~~p~~--~v~~vEidp~---------~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~ 141 (269)
.-+|||+|.|+|...... .+..|.. +++.+|.+|. ..++.+.... .+.+. ...-.++++.+|+
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~-~~~v~L~l~~GDa 175 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYE-GERLSLKVLLGDA 175 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEE-CSSEEEEEEESCH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcccc-CCcEEEEEEechH
Confidence 457999999999876433 2345655 5566665431 1122221111 11100 0122467889999
Q ss_pred ccc--c-cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 142 LKA--S-LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 142 ~~~--~-~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
++. . ...++|+|+.|+|++ ...|.++++++|+.++++++|||+++..+.. ..+.+.|+++
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP-~kNPeLWs~e~f~~l~~~~~pgg~laTYtaa----------------g~VRR~L~~a 238 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSP-YKNPELWTLDFLSLIKERIDEKGYWVSYSSS----------------LSVRKSLLTL 238 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCT-TTSGGGGSHHHHHHHHTTEEEEEEEEESCCC----------------HHHHHHHHHT
T ss_pred HHHHhhhcccceeEEEeCCCCc-ccCcccCCHHHHHHHHHHhCCCcEEEEEeCc----------------HHHHHHHHHC
Confidence 886 2 345899999999987 4678899999999999999999999975532 1344556665
Q ss_pred -hcCceEEEEcCCCCceEEEEecC
Q 035593 219 -FGKKLYVLSLGNRKDDSLIALTG 241 (269)
Q Consensus 219 -F~~~v~~~~~~~~~n~v~~~~~~ 241 (269)
| .|.-.+-....-.+++|+..
T Consensus 239 GF--~V~k~~G~g~KReml~A~~~ 260 (308)
T 3vyw_A 239 GF--KVGSSREIGRKRKGTVASLK 260 (308)
T ss_dssp TC--EEEEEECC---CEEEEEESS
T ss_pred CC--EEEecCCCCCCCceeEEecC
Confidence 5 46666654555677888754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=94.45 Aligned_cols=78 Identities=27% Similarity=0.298 Sum_probs=66.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---c---CC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---L---KD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~---~~ 148 (269)
+.+..+|||+|||+|..+..+++++|+.+|+++|+|+.+++.|++++... ..+++++++|+.++. . ..
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~------g~~v~~v~~d~~~l~~~l~~~g~~ 97 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF------SDRVSLFKVSYREADFLLKTLGIE 97 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG------TTTEEEEECCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEECCHHHHHHHHHhcCCC
Confidence 45678999999999999999999888889999999999999999987532 258999999988751 1 15
Q ss_pred CeeEEEEcCC
Q 035593 149 GFSGILVDLF 158 (269)
Q Consensus 149 ~yD~I~~d~~ 158 (269)
+||.|++|+.
T Consensus 98 ~~D~Vl~D~g 107 (301)
T 1m6y_A 98 KVDGILMDLG 107 (301)
T ss_dssp CEEEEEEECS
T ss_pred CCCEEEEcCc
Confidence 8999999863
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-09 Score=94.86 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=62.1
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.+..+|||||||+|.++..+++. +.+|++||+|+.+++.|++++.... .++++++.+|+..+.
T Consensus 31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~-----~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEG-----YNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEC----CCSSC
T ss_pred HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEECchhhCC
Confidence 344432223456789999999999999999874 5799999999999999999864221 257999999998873
Q ss_pred cCCCeeEEEEcCC
Q 035593 146 LKDGFSGILVDLF 158 (269)
Q Consensus 146 ~~~~yD~I~~d~~ 158 (269)
. .+||+|++++.
T Consensus 104 ~-~~~D~Vv~n~p 115 (299)
T 2h1r_A 104 F-PKFDVCTANIP 115 (299)
T ss_dssp C-CCCSEEEEECC
T ss_pred c-ccCCEEEEcCC
Confidence 3 38999998753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-08 Score=86.15 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||+|.++..++++. .+|++||+|+.+++.+++++.. .++++++++|+.++
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGGC
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc-------CCCeEEEEChHHhC
Confidence 45555544445578899999999999999999863 7999999999999999998752 25799999999987
Q ss_pred -cc-CCCeeEEEEcC
Q 035593 145 -SL-KDGFSGILVDL 157 (269)
Q Consensus 145 -~~-~~~yD~I~~d~ 157 (269)
.. ...| .|++++
T Consensus 89 ~~~~~~~~-~vv~nl 102 (244)
T 1qam_A 89 KFPKNQSY-KIFGNI 102 (244)
T ss_dssp CCCSSCCC-EEEEEC
T ss_pred CcccCCCe-EEEEeC
Confidence 22 3456 455553
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=97.52 Aligned_cols=98 Identities=14% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
+..+|||||||+|..+..+++++|+.+++++|+ |.+++.|++. ++++++.+|+.+ ..+ .||+|++.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~~-~~D~v~~~ 258 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-----------ENLNFVGGDMFK-SIP-SADAVLLK 258 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-----------SSEEEEECCTTT-CCC-CCSEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-----------CCcEEEeCccCC-CCC-CceEEEEc
Confidence 568999999999999999999999999999999 8888776541 359999999876 222 59999975
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccC---CcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRK---GGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~p---gG~l~~~~ 190 (269)
..-+. .+. .....+++++++.|+| ||.+++.-
T Consensus 259 ~vlh~-~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 259 WVLHD-WND-EQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp SCGGG-SCH-HHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred ccccC-CCH-HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 32211 110 0123899999999999 99888754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-09 Score=101.76 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
..+.+|||||||+|.++..|++ -+++|++||+++.+++.|+.++...+ .-++++.++|+.++ ..+++||+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~--~ga~V~giD~~~~~i~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~ 137 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLAS--KGATIVGIDFQQENINVCRALAEENP-----DFAAEFRVGRIEEVIAALEEGEFDL 137 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTST-----TSEEEEEECCHHHHHHHCCTTSCSE
T ss_pred CCCCeEEEECCCCcHHHHHHHh--CCCEEEEECCCHHHHHHHHHHHHhcC-----CCceEEEECCHHHHhhhccCCCccE
Confidence 3577999999999999999998 48899999999999999999874332 23699999999987 34678999
Q ss_pred EEEcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEE
Q 035593 153 ILVDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~ 188 (269)
|++- .+..|+.. ......+.+.|+++|...+
T Consensus 138 v~~~-----e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 138 AIGL-----SVFHHIVHLHGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp EEEE-----SCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred EEEC-----cchhcCCCHHHHHHHHHHHHHhccccceee
Confidence 9863 12222211 2233456667777764433
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.86 E-value=6e-09 Score=89.47 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=64.3
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||+|.++..+++. +.+|++||+|+.+++.+++++.. .++++++++|+.++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~-------~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ-------QKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT-------CTTEEEEESCTTTC
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh-------CCCcEEEEcchHhC
Confidence 3444443324457789999999999999999984 47999999999999999998752 25799999999987
Q ss_pred c--c---CCCeeEEEEcC
Q 035593 145 S--L---KDGFSGILVDL 157 (269)
Q Consensus 145 ~--~---~~~yD~I~~d~ 157 (269)
. . .++|| |+.++
T Consensus 88 ~~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 88 DFSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp CGGGSCCSSCEE-EEEEC
T ss_pred CHHHhccCCCeE-EEecC
Confidence 1 1 35788 65543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-09 Score=84.69 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c---cCCCe
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S---LKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~---~~~~y 150 (269)
+.+..+||+||||. +.+|+++.|++.|++++. .+++++++|+.+. . .+++|
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~---------~~~~~~~~d~~~~~~~~~~~~~f 64 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG---------NEGRVSVENIKQLLQSAHKESSF 64 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT---------TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc---------cCcEEEEechhcCccccCCCCCE
Confidence 56789999999985 239999999999999863 2489999999887 3 57789
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|++...-+ ...+ ...++++++++.|||||.+++.
T Consensus 65 D~V~~~~~l~-~~~~--~~~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 65 DIILSGLVPG-STTL--HSAEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp EEEEECCSTT-CCCC--CCHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECChhh-hccc--CHHHHHHHHHHHCCCCEEEEEE
Confidence 9999743222 1111 2479999999999999999985
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-11 Score=101.57 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=78.9
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.+.....+.+..+|||||||+|.++..+++. +.+|+++|+|+.+++.|++++.. .++++++++|+.++.
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~~~ 88 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDILQFQ 88 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCTTTT
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECChhhcC
Confidence 344433323456789999999999999999986 37999999999999999887641 357999999999872
Q ss_pred -c-CCCeeEEEEcCCCCCCCC------C-CCCcHHHH----HHHHhhccCCcEEEEEe
Q 035593 146 -L-KDGFSGILVDLFSKGSLL------S-ELEDPNTW----EKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 146 -~-~~~yD~I~~d~~~~~~~~------~-~l~~~e~~----~~~~~~L~pgG~l~~~~ 190 (269)
. .++| .|+++++-....+ . ......++ +.+.+.|+|||.+++..
T Consensus 89 ~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 89 FPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 2 3578 6766643221100 0 00112333 66778888888776644
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.7e-09 Score=98.98 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=77.4
Q ss_pred CCcEEEEcCcccHHHHHHHHH---CC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILDL---YP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~---~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
...|||+|||+|.+....++. .. ..+|.+||.+| ++..|++....+.| +.+|+++.+|++++..+++.|+|
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~----~dkVtVI~gd~eev~LPEKVDII 432 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW----GSQVTVVSSDMREWVAPEKADII 432 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT----GGGEEEEESCTTTCCCSSCEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC----CCeEEEEeCcceeccCCcccCEE
Confidence 356999999999996554443 21 34899999998 66777776654544 46899999999999888999999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
++...... ...+. ..+.+....+.|||||+++
T Consensus 433 VSEwMG~f-Ll~E~-mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSELLGSF-ADNEL-SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCCCBTT-BGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred EEEcCccc-ccccC-CHHHHHHHHHhcCCCcEEc
Confidence 98766432 22232 3578888889999999875
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=87.86 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.+..+|||||||.|.++..++++.+...+.++++.-.+... .... .....++..+.+++... ..+++||+
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~-----pi~~--~~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEK-----PMNV--QSLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCC-----CCCC--CBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccc-----cccc--CcCCCCeEEEeccceehhcCCCCccE
Confidence 4667789999999999999998875555588888887432100 0000 00011344455554323 44678999
Q ss_pred EEEcCCCCCCCC--CCCCcHHHHHHHHhhccCC-cEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 153 ILVDLFSKGSLL--SELEDPNTWEKLRQCLRKG-GRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 153 I~~d~~~~~~~~--~~l~~~e~~~~~~~~L~pg-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
|++|.....+.. .+..+...++.+.+.|+|| |.|++-++.++- .....+++.|++.|. .+...+
T Consensus 144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg----------~~~~~l~~~lk~~F~-~V~~~K 210 (277)
T 3evf_A 144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYM----------PDVLEKLELLQRRFG-GTVIRN 210 (277)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTS----------HHHHHHHHHHHHHHC-CEEECC
T ss_pred EEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCC----------ccHHHHHHHHHHhcC-CEEEEe
Confidence 999975441111 1222234578889999999 999999987531 236688999999996 676664
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.4e-08 Score=83.74 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=62.6
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.+.....+.+..+|||||||+|.++..+++. +..+|++||+|+.+++.++++ . ..+++++++|+.++
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~--------~~~v~~i~~D~~~~ 88 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G--------DERLEVINEDASKF 88 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C--------CTTEEEECSCTTTC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c--------CCCeEEEEcchhhC
Confidence 4455543334557889999999999999999984 457999999999999999887 3 35799999999987
Q ss_pred ccC---CCeeEEEEcC
Q 035593 145 SLK---DGFSGILVDL 157 (269)
Q Consensus 145 ~~~---~~yD~I~~d~ 157 (269)
... ..| .|+.++
T Consensus 89 ~~~~~~~~~-~vv~Nl 103 (249)
T 3ftd_A 89 PFCSLGKEL-KVVGNL 103 (249)
T ss_dssp CGGGSCSSE-EEEEEC
T ss_pred ChhHccCCc-EEEEEC
Confidence 211 234 666654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.2e-09 Score=94.52 Aligned_cols=75 Identities=15% Similarity=-0.040 Sum_probs=63.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc--ccccCCCCcEEEEEcccccc-c--cCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE--KLEKSYPDRLFVYVGNALKA-S--LKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~--~~~~~~~~rv~~~~~D~~~~-~--~~~~yD 151 (269)
+..+|||+|||+|..+..+++. +.+|++||+|+.+++.|++++... + -.+++++++|+.++ . ..++||
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~g-----l~~i~~i~~Da~~~L~~~~~~~fD 165 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNE-----GKDVNILTGDFKEYLPLIKTFHPD 165 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCT-----TCEEEEEESCGGGSHHHHHHHCCS
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccC-----CCcEEEEECcHHHhhhhccCCCce
Confidence 4789999999999999998873 679999999999999999987532 2 24799999999987 2 236899
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+|++|..
T Consensus 166 vV~lDPP 172 (410)
T 3ll7_A 166 YIYVDPA 172 (410)
T ss_dssp EEEECCE
T ss_pred EEEECCC
Confidence 9999964
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-08 Score=86.52 Aligned_cols=71 Identities=21% Similarity=0.223 Sum_probs=56.7
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
..+.++....+.+..+|||||||+|.++..++++.+. .+|++||+|+.+++.+++++ . ++++++++|+.
T Consensus 30 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~-------~~v~~i~~D~~ 100 (279)
T 3uzu_A 30 VIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G-------ELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G-------GGEEEEESCGG
T ss_pred HHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C-------CCcEEEECChh
Confidence 3444543323457889999999999999999986432 45999999999999999884 2 37999999999
Q ss_pred cc
Q 035593 143 KA 144 (269)
Q Consensus 143 ~~ 144 (269)
++
T Consensus 101 ~~ 102 (279)
T 3uzu_A 101 TF 102 (279)
T ss_dssp GC
T ss_pred cC
Confidence 87
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-09 Score=88.95 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=62.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECCh-------HHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDP-------SVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-- 145 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp-------~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-- 145 (269)
.+..+|||+|||+|..+..+++. +.+|+++|++| .+++.|+++...+.. ..+++++++|+.++ .
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARINLHFGNAAEQMPAL 155 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTEEEEESCHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCeEEEECCHHHHHHhh
Confidence 35689999999999999999984 67999999999 999999887643321 24699999999986 2
Q ss_pred cC--CCeeEEEEcCC
Q 035593 146 LK--DGFSGILVDLF 158 (269)
Q Consensus 146 ~~--~~yD~I~~d~~ 158 (269)
.. ++||+|++|..
T Consensus 156 ~~~~~~fD~V~~dP~ 170 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPM 170 (258)
T ss_dssp HHHHCCCSEEEECCC
T ss_pred hccCCCccEEEECCC
Confidence 22 68999999864
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-08 Score=87.85 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=89.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.+..+|||||||.|.++.++++..+...|.++|+...+...+... . . ...++..+..++... ....++|+
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~-~-----~g~~ii~~~~~~dv~~l~~~~~Dv 159 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-T-T-----LGWNLIRFKDKTDVFNMEVIPGDT 159 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-C-B-----TTGGGEEEECSCCGGGSCCCCCSE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-c-c-----CCCceEEeeCCcchhhcCCCCcCE
Confidence 46678899999999999999988755666899999976432111110 0 0 012333333222212 34578999
Q ss_pred EEEcCCCCCCCC--CCCCcHHHHHHHHhhccCC--cEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 153 ILVDLFSKGSLL--SELEDPNTWEKLRQCLRKG--GRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 153 I~~d~~~~~~~~--~~l~~~e~~~~~~~~L~pg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
|++|.....+.. .+..+.+.++.+.+.|+|| |.|++-++.++- . ....+++.|++.|. .+...+
T Consensus 160 VLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg---------~-~~~~l~~~lk~~F~-~V~~~K 227 (282)
T 3gcz_A 160 LLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYT---------P-LIMEELSRLQLKHG-GGLVRV 227 (282)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCS---------H-HHHHHHHHHHHHHC-CEEECC
T ss_pred EEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCC---------c-cHHHHHHHHHHhcC-CEEEEc
Confidence 999976542221 1222335688888999999 999999987531 2 36688999999996 676664
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-08 Score=94.31 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC------------------CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP------------------EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY 137 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p------------------~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~ 137 (269)
.+..+|||.+||+|.+...+.+... ..+++++|+|+.++++|+.++.+.......+.+++++
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 3567999999999999988776431 2479999999999999998864432100000137889
Q ss_pred Ecccccc--ccCCCeeEEEEcCCCCCCCCC----------CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 138 VGNALKA--SLKDGFSGILVDLFSKGSLLS----------ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 138 ~~D~~~~--~~~~~yD~I~~d~~~~~~~~~----------~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++|.... ....+||+|+.+++-...... .-....|++.+.+.|+|||.+++-+.
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 9998765 345789999998543211100 00113799999999999999988764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=7.9e-08 Score=93.66 Aligned_cols=123 Identities=18% Similarity=0.044 Sum_probs=82.5
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC------------------------------------------CC
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLY------------------------------------------PE 101 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~------------------------------------------p~ 101 (269)
.....|+.+....+...|||.+||+|+++.+++... +.
T Consensus 177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 344445433334567899999999999998877541 23
Q ss_pred ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc---CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh
Q 035593 102 AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL---KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 102 ~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~---~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
.+|+++|+|+.+++.|+++....+ ....+++.++|+.++.. .++||+|+++++-.......-...++|+.+.+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~ag----v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAG----IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 589999999999999999874332 13469999999998832 23899999986433211111112456666655
Q ss_pred hc---cCCcEEEEEe
Q 035593 179 CL---RKGGRIMVNV 190 (269)
Q Consensus 179 ~L---~pgG~l~~~~ 190 (269)
.| .|||.+.+-.
T Consensus 333 ~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 333 IMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHCTTCEEEEEE
T ss_pred HHHhhCCCCeEEEEe
Confidence 54 4788777654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-08 Score=94.75 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=74.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-------------CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 78 PGPIGILGFGAGSAARLILDLY-------------PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-------------p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
.+.|||||||+|.+...+++.. ...+|++||.||..+...++... +.| ..+|+++.+|++++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~----~d~VtVI~gd~eev 484 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW----KRRVTIIESDMRSL 484 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT----TTCSEEEESCGGGH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC----CCeEEEEeCchhhc
Confidence 3579999999999975433221 13499999999976655444332 333 36899999999999
Q ss_pred cc------CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 145 SL------KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 145 ~~------~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
.. .++.|+|++..... ....-..++.+..+.+.|||||+++
T Consensus 485 ~lp~~~~~~ekVDIIVSElmGs--fl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 485 PGIAKDRGFEQPDIIVSELLGS--FGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHTTCCCCSEEEECCCBT--TBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccccCCCCcccEEEEecccc--ccchhccHHHHHHHHHhCCCCcEEE
Confidence 44 78999999876532 1111124688888899999999876
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-08 Score=84.60 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=57.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc------C
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL------K 147 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~------~ 147 (269)
.+.+..+|||||||+|.++. +.+ .+..+|++||+|+.+++.+++++.. .++++++++|+..+.. .
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~-------~~~v~~i~~D~~~~~~~~~~~~~ 88 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGGGCCHHHHHHHH
T ss_pred CCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECchhhCCHHHhhccc
Confidence 34567899999999999999 654 3333499999999999999998742 2479999999998621 1
Q ss_pred CCeeEEEEcC
Q 035593 148 DGFSGILVDL 157 (269)
Q Consensus 148 ~~yD~I~~d~ 157 (269)
+..|.|+.++
T Consensus 89 ~~~~~vvsNl 98 (252)
T 1qyr_A 89 GQPLRVFGNL 98 (252)
T ss_dssp TSCEEEEEEC
T ss_pred CCceEEEECC
Confidence 2456777764
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.4e-08 Score=85.77 Aligned_cols=106 Identities=16% Similarity=0.083 Sum_probs=79.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC-----CCceEEEEECChH--------------------------HHHHHHHhcCccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLY-----PEAVIHGWELDPS--------------------------VIKVAREFFALEK 125 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~-----p~~~v~~vEidp~--------------------------~~~~a~~~~~~~~ 125 (269)
.+++|||+|+..|..+..+++.. ++.+|+++|..+. .++.++++|...+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 58899999999999998887653 4779999996421 3566777764221
Q ss_pred cccCCCCcEEEEEcccccc---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 126 LEKSYPDRLFVYVGNALKA---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 126 ~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
. ..++++++.||+.+. ...++||+|++|+... -.+.++|+.+..+|+|||++++.-.
T Consensus 186 l---~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y------~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 186 L---LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY------ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp C---CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH------HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred C---CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc------ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 1 136899999999876 2346899999997421 1246899999999999999999554
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-08 Score=84.14 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=67.4
Q ss_pred CCCC--CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-------ccccccCCCCcEEEEEcccccc-
Q 035593 75 ILPP--GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-------LEKLEKSYPDRLFVYVGNALKA- 144 (269)
Q Consensus 75 l~~~--~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-------~~~~~~~~~~rv~~~~~D~~~~- 144 (269)
+.++ .+|||+|||.|..+..+++. +++|++||++|.+++++++.+. .+.| ...+++++++|+.++
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~---l~~~i~~~~~D~~~~L 158 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGW---LQERLQLIHASSLTAL 158 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHH---HHHHEEEEESCHHHHS
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhh---hhcCEEEEECCHHHHH
Confidence 3455 89999999999999999986 5689999999998777766542 1110 014799999999987
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCc
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGG 184 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG 184 (269)
...++||+|++|..-+.. . ..+.+++..+.|++.+
T Consensus 159 ~~~~~~fDvV~lDP~y~~~--~---~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 159 TDITPRPQVVYLDPMFPHK--Q---KSALVKKEMRVFQSLV 194 (258)
T ss_dssp TTCSSCCSEEEECCCCCCC--C---C-----HHHHHHHHHS
T ss_pred HhCcccCCEEEEcCCCCCc--c---cchHHHHHHHHHHHhh
Confidence 234579999999643321 1 1234455555555543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.4e-08 Score=92.74 Aligned_cols=111 Identities=9% Similarity=-0.022 Sum_probs=79.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHCC---------------CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 78 PGPIGILGFGAGSAARLILDLYP---------------EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p---------------~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
+.+|||.+||+|.+...+.+... ..+++++|+|+.++++|+.++.+... +.++.++++|..
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi----~~~i~i~~gDtL 320 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI----DFNFGKKNADSF 320 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC----CCBCCSSSCCTT
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC----Ccccceeccchh
Confidence 34899999999999887755322 46899999999999999988754331 234555788876
Q ss_pred cc--ccCCCeeEEEEcCCCCCC------------------------CCCC-CCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 143 KA--SLKDGFSGILVDLFSKGS------------------------LLSE-LEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 143 ~~--~~~~~yD~I~~d~~~~~~------------------------~~~~-l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.. ....+||+|+.+++-... .++. -..-.|++.+.+.|+|||.+++-+..
T Consensus 321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 55 345789999998543311 1111 01126999999999999999887743
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.3e-07 Score=80.44 Aligned_cols=137 Identities=14% Similarity=0.125 Sum_probs=97.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC---ccccccCCCCcEEEEEcccccc--ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA---LEKLEKSYPDRLFVYVGNALKA--SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~---~~~~~~~~~~rv~~~~~D~~~~--~~~~~ 149 (269)
..|..+|||+++|.|+=+.+++...++..|+++|+++.-++..++++. ... .....++.+...|++.+ ...++
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~--~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEE--IRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTT--TTTSSSEEEECCCGGGHHHHSTTC
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhh--hccCCceEEEeCchhhcchhcccc
Confidence 457889999999999999999887666789999999999888877652 111 00135799999999988 45679
Q ss_pred eeEEEEcCCCCCC---C---CCCC--------------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHH
Q 035593 150 FSGILVDLFSKGS---L---LSEL--------------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVME 209 (269)
Q Consensus 150 yD~I~~d~~~~~~---~---~~~l--------------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (269)
||.|++|++-... . .+.. ...++++.+.+.|||||+|+....+..+. .+ +..+.
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~-----EN-E~vV~ 297 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL-----QN-EYVVQ 297 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT-----TT-HHHHH
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh-----hC-HHHHH
Confidence 9999999875431 1 1111 12478888999999999999988776542 12 34455
Q ss_pred HHHHHHHHHh
Q 035593 210 ATLKAMHKVF 219 (269)
Q Consensus 210 ~~~~~l~~~F 219 (269)
.+++.....+
T Consensus 298 ~~L~~~~~~~ 307 (359)
T 4fzv_A 298 GAIELLANQY 307 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhCCCCc
Confidence 5555544443
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-07 Score=85.63 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=83.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC---CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY---PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~---p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+..+|||.+||+|.+...+.++. +..+++++|+++.++++|+.++.+... ..+++.++++|.... ....+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi---~~~~~~I~~gDtL~~d~p~~~~~~ 297 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV---PIENQFLHNADTLDEDWPTQEPTN 297 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEESCTTTSCSCCSSCCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC---CcCccceEecceeccccccccccc
Confidence 46799999999999998888764 357999999999999999987644321 114689999998765 24578
Q ss_pred eeEEEEcCCCCCCC------------------CCC-CCcHHHHHHHHhhcc-CCcEEEEEecC
Q 035593 150 FSGILVDLFSKGSL------------------LSE-LEDPNTWEKLRQCLR-KGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~~------------------~~~-l~~~e~~~~~~~~L~-pgG~l~~~~~~ 192 (269)
||+|+.+++-.... ++. -..-.|++.+.+.|+ |||++++-+..
T Consensus 298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 99999985432111 000 001359999999999 99999887754
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=80.51 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=88.0
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-cccccccCCCee
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKASLKDGFS 151 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~~~~~~yD 151 (269)
..+.+..+||||||+.|+++..+++..+...|+++|+...+....+. ..... .+-+.+..+ |.+. ..+.++|
T Consensus 77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~-----~~iv~~~~~~di~~-l~~~~~D 149 (300)
T 3eld_A 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG-----WNIVKFKDKSNVFT-MPTEPSD 149 (300)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-----GGGEEEECSCCTTT-SCCCCCS
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC-----CceEEeecCceeee-cCCCCcC
Confidence 34567889999999999999999986555689999996532100000 00000 011222211 2222 3457899
Q ss_pred EEEEcCCCCCCCC--CCCCcHHHHHHHHhhccCC-cEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 152 GILVDLFSKGSLL--SELEDPNTWEKLRQCLRKG-GRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 152 ~I~~d~~~~~~~~--~~l~~~e~~~~~~~~L~pg-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
+|++|.....+.. .+..+...++.+.+.|+|| |.|++-++.++ ......++..|++.|. .+...+
T Consensus 150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y----------G~~~~~ll~~lk~~F~-~V~~~K 217 (300)
T 3eld_A 150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY----------HPDVIEKLERLQLRFG-GGIVRV 217 (300)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT----------SHHHHHHHHHHHHHHC-CEEECC
T ss_pred EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc----------CccHHHHHHHHHHhCC-cEEEEe
Confidence 9999976542211 1222345688888999999 99999998753 1236788999999996 666664
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.6e-07 Score=88.25 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC---CceEEEEECChHHHHHH--HHhcCccccccCCCCcEEEEEcccccc--ccCC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP---EAVIHGWELDPSVIKVA--REFFALEKLEKSYPDRLFVYVGNALKA--SLKD 148 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p---~~~v~~vEidp~~~~~a--~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~ 148 (269)
.+..+|||.|||+|.++..+++..+ ..+++++|+|+.++++| +..+..+.... ......+...|.... ....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Llh-Gi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVS-SNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCB-TTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhc-CCCcceEEecchhcccccccC
Confidence 3577999999999999999988664 36899999999999999 54443211100 012245666676663 3457
Q ss_pred CeeEEEEcCCCCCCCC-------------------C-C----C-CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLL-------------------S-E----L-EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~-------------------~-~----l-~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+||+|+.+++-..... + . . ....|++.+.+.|++||.+++-+..
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 8999999864321100 0 0 0 1236889999999999999988754
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=75.76 Aligned_cols=73 Identities=27% Similarity=0.302 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c--cCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S--LKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~--~~~ 148 (269)
+.+...++|.+||.|..+..++++ +.+|+++|.||.+++.|++ +. ++|++++++++.++ . ..+
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~--------~~rv~lv~~~f~~l~~~L~~~g~~ 88 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH--------LPGLTVVQGNFRHLKRHLAALGVE 88 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC--------CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc--------cCCEEEEECCcchHHHHHHHcCCC
Confidence 457789999999999999999995 7899999999999999999 64 25899999999987 1 225
Q ss_pred CeeEEEEcCC
Q 035593 149 GFSGILVDLF 158 (269)
Q Consensus 149 ~yD~I~~d~~ 158 (269)
++|.|++|+.
T Consensus 89 ~vDgIL~DLG 98 (285)
T 1wg8_A 89 RVDGILADLG 98 (285)
T ss_dssp CEEEEEEECS
T ss_pred CcCEEEeCCc
Confidence 7999998864
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-06 Score=72.86 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=80.0
Q ss_pred CCcEEEEcC------cccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCe
Q 035593 78 PGPIGILGF------GAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~------G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~y 150 (269)
..+||++|+ ..|+ ..+++..|. +.|+++|+.|-. . +.. .++++|..+.....+|
T Consensus 110 gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~-----------s-----da~-~~IqGD~~~~~~~~k~ 170 (344)
T 3r24_A 110 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-----------S-----DAD-STLIGDCATVHTANKW 170 (344)
T ss_dssp TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-----------C-----SSS-EEEESCGGGEEESSCE
T ss_pred CCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc-----------c-----CCC-eEEEccccccccCCCC
Confidence 789999996 5666 344555675 699999998721 1 223 4499998877667899
Q ss_pred eEEEEcCCCCCC-C--CCC----CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCce
Q 035593 151 SGILVDLFSKGS-L--LSE----LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKL 223 (269)
Q Consensus 151 D~I~~d~~~~~~-~--~~~----l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v 223 (269)
|+|++|...... . ... -..+..++-+.++|+|||.|++-++... . ...+..+++.|. .+
T Consensus 171 DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs-----------g--~~~L~~lrk~F~-~V 236 (344)
T 3r24_A 171 DLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------W--NADLYKLMGHFS-WW 236 (344)
T ss_dssp EEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------C--CHHHHHHHTTEE-EE
T ss_pred CEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC-----------C--HHHHHHHHhhCC-eE
Confidence 999999865522 1 111 1235677778999999999999887532 1 133566778995 55
Q ss_pred EEEE
Q 035593 224 YVLS 227 (269)
Q Consensus 224 ~~~~ 227 (269)
-.++
T Consensus 237 K~fK 240 (344)
T 3r24_A 237 TAFV 240 (344)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5554
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.1e-07 Score=76.53 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=82.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcE---EEEEc-cccccccCCC
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRL---FVYVG-NALKASLKDG 149 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv---~~~~~-D~~~~~~~~~ 149 (269)
.+.|..+|+||||+.|+.+.++++..+-..|.+..+.... . ...... ..+.+ +++.+ |+++. ...+
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~----~~~Gv~~i~~~~G~Df~~~-~~~~ 139 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLM----QSYGWNIVTMKSGVDVFYK-PSEI 139 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCC----CSTTGGGEEEECSCCGGGS-CCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcc----cCCCceEEEeeccCCccCC-CCCC
Confidence 6778999999999999999999884211233444433221 0 001110 00233 55557 88764 3458
Q ss_pred eeEEEEcCCCCCCCC--CCCCcHHHHHHHHhhccCCc-EEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEE
Q 035593 150 FSGILVDLFSKGSLL--SELEDPNTWEKLRQCLRKGG-RIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYV 225 (269)
Q Consensus 150 yD~I~~d~~~~~~~~--~~l~~~e~~~~~~~~L~pgG-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~ 225 (269)
+|+|++|+....... .+..+...++-+.+.|+||| .|++-++... ...+.+.++.|++.|. .+..
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~----------~~~~~~~l~~lk~~F~-~vkv 207 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPY----------MPKVIEKLESLQRRFG-GGLV 207 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT----------SHHHHHHHHHHHHHHC-CEEE
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCC----------chHHHHHHHHHHHHcC-CEEE
Confidence 999999986542211 12222346777889999999 9999888643 2236677889999996 4553
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=73.02 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=89.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHH--HHHhcCccccccCCCCcEEEEEc-cccccccCCCe
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKV--AREFFALEKLEKSYPDRLFVYVG-NALKASLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~--a~~~~~~~~~~~~~~~rv~~~~~-D~~~~~~~~~y 150 (269)
.+.+...||||||+.|..+.+++......+|.++|+-+.--+. -.+.++ -.-++++.+ |.+.... .++
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~g--------wn~v~fk~gvDv~~~~~-~~~ 145 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYG--------WNIVKLMSGKDVFYLPP-EKC 145 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTT--------TTSEEEECSCCGGGCCC-CCC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcC--------cCceEEEeccceeecCC-ccc
Confidence 5678889999999999999988886555689999996532110 000111 135899999 8755433 779
Q ss_pred eEEEEcCCCCCCCCC--CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC
Q 035593 151 SGILVDLFSKGSLLS--ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK 221 (269)
Q Consensus 151 D~I~~d~~~~~~~~~--~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 221 (269)
|.|++|.-.....+. +.-+...++.+.+.|++ |-+++-+..++ .+...+.++.|+..|+.
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py----------~p~v~e~l~~lq~~fgg 207 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY----------MPTVIEHLERLQRKHGG 207 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC----------SHHHHHHHHHHHHHHCC
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC----------ChhHHHHHHHHHHHhCC
Confidence 999999866322211 11234577888899998 89999888775 22345778889999974
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-06 Score=84.08 Aligned_cols=112 Identities=15% Similarity=0.215 Sum_probs=78.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-------C-----CceEEEEECCh---HHHHHHHHhcC-c--------cccc------
Q 035593 78 PGPIGILGFGAGSAARLILDLY-------P-----EAVIHGWELDP---SVIKVAREFFA-L--------EKLE------ 127 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-------p-----~~~v~~vEidp---~~~~~a~~~~~-~--------~~~~------ 127 (269)
+-+|||+|.|+|.....+.+.+ | ..+++.+|..| +.+..|-..+. + ..|.
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 4689999999999887776542 2 16899999955 44433222211 0 0010
Q ss_pred ---cCC--CCcEEEEEcccccc--cc----CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 128 ---KSY--PDRLFVYVGNALKA--SL----KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 128 ---~~~--~~rv~~~~~D~~~~--~~----~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
... .-+++++.||+++. .. ..++|++++|.|++ ...+.+++.++|..+.+.++|||.++...
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p-~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 211 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAP-AKNPDMWNEQLFNAMARMTRPGGTFSTFT 211 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCC-CCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 011 23688999999876 21 47899999999987 46678999999999999999999987644
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.6e-06 Score=70.26 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=88.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHH--HHHhcCccccccCCCCcEEEEEc-cccccccCCCe
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKV--AREFFALEKLEKSYPDRLFVYVG-NALKASLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~--a~~~~~~~~~~~~~~~rv~~~~~-D~~~~~~~~~y 150 (269)
.+.+...||||||+.|..+.+++......+|.++|+-..--+. -.+.++. .-++++.+ |++.... .++
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w--------~lV~~~~~~Dv~~l~~-~~~ 161 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGW--------NIVTMKSGVDVFYRPS-ECC 161 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTG--------GGEEEECSCCTTSSCC-CCC
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCC--------cceEEEeccCHhhCCC-CCC
Confidence 4567889999999999999988875545589999996531100 0001111 23788877 7766543 679
Q ss_pred eEEEEcCCCCCCCCC--CCCcHHHHHHHHhhccCC-cEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC
Q 035593 151 SGILVDLFSKGSLLS--ELEDPNTWEKLRQCLRKG-GRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK 221 (269)
Q Consensus 151 D~I~~d~~~~~~~~~--~l~~~e~~~~~~~~L~pg-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 221 (269)
|+|++|+......+. ..-+...++.+.+.|+++ |-|++-+..++. . ...+.++.|+..|+.
T Consensus 162 D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~---------~-~v~e~l~~lq~~fgg 225 (321)
T 3lkz_A 162 DTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYM---------P-KVIEKMELLQRRYGG 225 (321)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTS---------H-HHHHHHHHHHHHHCC
T ss_pred CEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCC---------h-HHHHHHHHHHHHhCC
Confidence 999999874422211 112345777888999998 999999987752 2 345778899999974
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-06 Score=81.55 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=81.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-------C-----CceEEEEEC---ChHHHHHHHHhcC-c--------cccc------
Q 035593 78 PGPIGILGFGAGSAARLILDLY-------P-----EAVIHGWEL---DPSVIKVAREFFA-L--------EKLE------ 127 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-------p-----~~~v~~vEi---dp~~~~~a~~~~~-~--------~~~~------ 127 (269)
.-+|||+|.|+|.......+.+ | ..+++++|. +++.+..+-..+. + ..|.
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 4589999999999887766542 2 257999999 7777765444221 0 0010
Q ss_pred ---cCC--CCcEEEEEcccccc--cc----CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 128 ---KSY--PDRLFVYVGNALKA--SL----KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 128 ---~~~--~~rv~~~~~D~~~~--~~----~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
... .-+++++.+|+++. .. ..++|+|++|.|++ ...+.+++.++|+.+++.++|||.++...
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p-~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 219 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP-AKNPDMWTQNLFNAMARLARPGGTLATFT 219 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG-GGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCC-cCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 001 24678899999875 21 46899999999987 35678999999999999999999988754
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.14 E-value=9.7e-06 Score=69.96 Aligned_cols=154 Identities=14% Similarity=0.020 Sum_probs=101.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
++..+||+=+|+|.++.++++ +..+++.||.++..++..++++.. ..+++++..|+... ....+||
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D~~~~L~~l~~~~~~fd 161 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSKLNALLPPPEKRG 161 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHHHHHHCSCTTSCE
T ss_pred cCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCcHHHHHHHhcCCCCCcc
Confidence 467899999999999999988 568999999999999999998853 36899999999875 2345799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHh--hccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE--
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQ--CLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS-- 227 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~--~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~-- 227 (269)
+|++|.+-.. .. .-...++.+.+ .+.|+|+++++..-.. ......+.+.|++.-. ....++
T Consensus 162 LVfiDPPYe~---k~-~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~----------~~~~~~~~~~l~~~~~-~~l~~el~ 226 (283)
T 2oo3_A 162 LIFIDPSYER---KE-EYKEIPYAIKNAYSKFSTGLYCVWYPVVN----------KAWTEQFLRKMREISS-KSVRIELH 226 (283)
T ss_dssp EEEECCCCCS---TT-HHHHHHHHHHHHHHHCTTSEEEEEEEESS----------HHHHHHHHHHHHHHCS-SEEEEEEE
T ss_pred EEEECCCCCC---Cc-HHHHHHHHHHHhCccCCCeEEEEEEeccc----------hHHHHHHHHHHHhcCC-CeEEEEEE
Confidence 9999963220 00 12344444443 4678999999874332 2346677788876533 343332
Q ss_pred cCC----CCc-eEEEEecCCCCCHHHHHHhcC
Q 035593 228 LGN----RKD-DSLIALTGELPDLDDWKRALP 254 (269)
Q Consensus 228 ~~~----~~n-~v~~~~~~~~~~~~~~~~~l~ 254 (269)
+.. +-+ .=+++.+.|..-.+++++.+|
T Consensus 227 ~~~~~~~gm~gsGm~viNpP~~l~~~~~~~l~ 258 (283)
T 2oo3_A 227 LNPLINEGMTGCGLWIINPPYTFPSEIKLVLE 258 (283)
T ss_dssp CCCSSCCSCCEEEEEEESCCTTHHHHHHHHHH
T ss_pred ecCCCCCCcCceeEEEECCchhHHHHHHHHHH
Confidence 211 111 125556666543444444443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=6.4e-05 Score=67.27 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=66.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||++.|+.+..+.++ +.+|++||+.|---.+ . ..++|+++.+|+..+ ....++|+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l-~-----------~~~~V~~~~~d~~~~~~~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSL-M-----------DTGQVTWLREDGFKFRPTRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHH-H-----------TTTCEEEECSCTTTCCCCSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhh-c-----------cCCCeEEEeCccccccCCCCCcCEE
Confidence 557889999999999999999984 7899999986511111 1 147899999999998 445689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCC--cEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKG--GRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg--G~l~~~~ 190 (269)
++|.... .....+.+.+.|..+ +.+++|+
T Consensus 275 vsDm~~~--------p~~~~~l~~~wl~~~~~~~aI~~l 305 (375)
T 4auk_A 275 VCDMVEK--------PAKVAALMAQWLVNGWCRETIFNL 305 (375)
T ss_dssp EECCSSC--------HHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred EEcCCCC--------hHHhHHHHHHHHhccccceEEEEE
Confidence 9997543 234444444444443 2355665
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.6e-05 Score=72.57 Aligned_cols=111 Identities=18% Similarity=0.070 Sum_probs=77.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-------------CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-------------EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-------------~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
+..+|+|-.||+|++...+.++.. ...+.++|+++.+..+|+-++-+.. ....++..+|...
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg-----~~~~~I~~~dtL~ 291 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG-----LEYPRIDPENSLR 291 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT-----CSCCEEECSCTTC
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC-----Ccccccccccccc
Confidence 467999999999999877654321 2479999999999999998764433 2234677888775
Q ss_pred c-----ccCCCeeEEEEcCCCCCCC--------CC----CCCcHHHHHHHHhhcc-------CCcEEEEEecC
Q 035593 144 A-----SLKDGFSGILVDLFSKGSL--------LS----ELEDPNTWEKLRQCLR-------KGGRIMVNVGG 192 (269)
Q Consensus 144 ~-----~~~~~yD~I~~d~~~~~~~--------~~----~l~~~e~~~~~~~~L~-------pgG~l~~~~~~ 192 (269)
. ....+||+|+.+++-.... +. .-...-|++.+.+.|+ |||++++-+..
T Consensus 292 ~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 292 FPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp SCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred CchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence 4 2345899999986433111 10 0012357888888887 69999887743
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00025 Score=63.99 Aligned_cols=110 Identities=14% Similarity=-0.031 Sum_probs=75.3
Q ss_pred CCcEEEEcCcccHHHHHHHHH-----------------CCCceEEEEECC-----------hHHHHHHHHhcCccccccC
Q 035593 78 PGPIGILGFGAGSAARLILDL-----------------YPEAVIHGWELD-----------PSVIKVAREFFALEKLEKS 129 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~-----------------~p~~~v~~vEid-----------p~~~~~a~~~~~~~~~~~~ 129 (269)
+-+|+|+||++|..+..+... .|..+|..-|+- |.+.+.+++..+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------ 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence 578999999999998776654 356788888986 5555554443321
Q ss_pred CCCcEEEEEcccccc----ccCCCeeEEEEcCCCCCC--CCCCCCc------------------H---------------
Q 035593 130 YPDRLFVYVGNALKA----SLKDGFSGILVDLFSKGS--LLSELED------------------P--------------- 170 (269)
Q Consensus 130 ~~~rv~~~~~D~~~~----~~~~~yD~I~~d~~~~~~--~~~~l~~------------------~--------------- 170 (269)
..+-.++.+.+..| .+.+++|+|++...-++- .+..+.. +
T Consensus 127 -~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~ 205 (384)
T 2efj_A 127 -KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT 205 (384)
T ss_dssp -CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence 12347777888877 567899999987655532 1212211 1
Q ss_pred HHHHHHHhhccCCcEEEEEecCCC
Q 035593 171 NTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 171 e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++..++.|+|||.+++.+.+..
T Consensus 206 ~FL~~Ra~eL~pGG~mvl~~~gr~ 229 (384)
T 2efj_A 206 TFLRIHSEELISRGRMLLTFICKE 229 (384)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHhccCCeEEEEEecCC
Confidence 247777999999999999987753
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.3e-05 Score=66.00 Aligned_cols=74 Identities=31% Similarity=0.390 Sum_probs=61.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----cc---
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SL--- 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~--- 146 (269)
+.|...++|..||+|..+.+++++. |+.+|+++|.||.+++.|+ .+ . +.|+++++++..++ ..
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~------~~Rv~lv~~nF~~l~~~L~~~g~ 125 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D------DPRFSIIHGPFSALGEYVAERDL 125 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C------CTTEEEEESCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 4567899999999999999999875 6789999999999999995 43 1 46899999999887 11
Q ss_pred CCCeeEEEEcC
Q 035593 147 KDGFSGILVDL 157 (269)
Q Consensus 147 ~~~yD~I~~d~ 157 (269)
.+++|.|+.|+
T Consensus 126 ~~~vDgILfDL 136 (347)
T 3tka_A 126 IGKIDGILLDL 136 (347)
T ss_dssp TTCEEEEEEEC
T ss_pred CCcccEEEECC
Confidence 23699999875
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.72 E-value=4.8e-05 Score=67.97 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=50.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
...|||||.|.|.++..|++.....+|++||+|+.++...++.+. .++++++.+|+..+
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~--------~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--------GSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--------TSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc--------CCCEEEEECCccch
Confidence 478999999999999999985445689999999999999888762 35899999999765
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.68 E-value=6.7e-05 Score=58.30 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=45.3
Q ss_pred CCCCcEEEEcCccc-HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeE
Q 035593 76 LPPGPIGILGFGAG-SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G-~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~ 152 (269)
.++.+|||||||.| ..+..|+++ .+..|+++||+|..++ ++..|.++-. .-+.||+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~--------------------~v~dDiF~P~~~~Y~~~DL 92 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG--------------------IVRDDITSPRMEIYRGAAL 92 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT--------------------EECCCSSSCCHHHHTTEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc--------------------eEEccCCCCcccccCCcCE
Confidence 35789999999999 699999874 4789999999984333 6667777652 2258999
Q ss_pred EEE
Q 035593 153 ILV 155 (269)
Q Consensus 153 I~~ 155 (269)
|..
T Consensus 93 IYs 95 (153)
T 2k4m_A 93 IYS 95 (153)
T ss_dssp EEE
T ss_pred EEE
Confidence 963
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00036 Score=62.79 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=71.2
Q ss_pred CCcEEEEcCcccHHHHHH--------HHHC-------CCceEEEEECChHHHHHHHHhcC-cccc------ccCCCCcEE
Q 035593 78 PGPIGILGFGAGSAARLI--------LDLY-------PEAVIHGWELDPSVIKVAREFFA-LEKL------EKSYPDRLF 135 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l--------~~~~-------p~~~v~~vEidp~~~~~a~~~~~-~~~~------~~~~~~rv~ 135 (269)
+-+|+|+|||+|..+..+ .+++ |..+|..-|+-..-....=+.+. .... ......+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999998776 2222 56788888875544332222221 1000 000011224
Q ss_pred EEEcccccc----ccCCCeeEEEEcCCCCCCC--CCCCC--------------------------------cHHHHHHHH
Q 035593 136 VYVGNALKA----SLKDGFSGILVDLFSKGSL--LSELE--------------------------------DPNTWEKLR 177 (269)
Q Consensus 136 ~~~~D~~~~----~~~~~yD~I~~d~~~~~~~--~~~l~--------------------------------~~e~~~~~~ 177 (269)
++.+.+..| .+.+++|+|++...-++-. +..+. -..|++..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665 4678999999876555321 11121 124688889
Q ss_pred hhccCCcEEEEEecCC
Q 035593 178 QCLRKGGRIMVNVGGS 193 (269)
Q Consensus 178 ~~L~pgG~l~~~~~~~ 193 (269)
+.|+|||.+++.+.+.
T Consensus 213 ~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHEEEEEEEEEEEEEC
T ss_pred HHhCCCCEEEEEEecC
Confidence 9999999999988765
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00035 Score=60.75 Aligned_cols=45 Identities=22% Similarity=0.092 Sum_probs=40.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
.+...|||++||+|+++..+++ .+.+++++|++|.+++.|++++.
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~--~g~~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAAR--WGRRALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHH
Confidence 3678999999999999999887 36799999999999999998874
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00083 Score=60.03 Aligned_cols=112 Identities=17% Similarity=0.066 Sum_probs=76.3
Q ss_pred CCcEEEEcCcccHHHHHHHH--------H--------CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 78 PGPIGILGFGAGSAARLILD--------L--------YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~--------~--------~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
+-+|+|+||++|..+..+.. + .|..+|..-|+-.......-+.+..-. ...+-.++.+.+
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~----~~~~~~f~~gvp 127 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----DVDGVCFINGVP 127 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----SCTTCEEEEEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc----ccCCCEEEEecc
Confidence 57899999999976644332 1 356799999998877777666543100 011346777887
Q ss_pred ccc----ccCCCeeEEEEcCCCCCC--CCCCC--------------------Cc-------HHHHHHHHhhccCCcEEEE
Q 035593 142 LKA----SLKDGFSGILVDLFSKGS--LLSEL--------------------ED-------PNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 142 ~~~----~~~~~yD~I~~d~~~~~~--~~~~l--------------------~~-------~e~~~~~~~~L~pgG~l~~ 188 (269)
..| .+.+++|+|++...-++- .|..+ +. ..|++..++.|+|||.+++
T Consensus 128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 776 567899999987654431 11111 11 2568888999999999999
Q ss_pred EecCC
Q 035593 189 NVGGS 193 (269)
Q Consensus 189 ~~~~~ 193 (269)
.+.+.
T Consensus 208 ~~~gr 212 (359)
T 1m6e_X 208 TILGR 212 (359)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 88765
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0042 Score=52.86 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=72.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHH-------CCCceEEEEE-----CChH-----------------------HHHHH--HH
Q 035593 77 PPGPIGILGFGAGSAARLILDL-------YPEAVIHGWE-----LDPS-----------------------VIKVA--RE 119 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~-------~p~~~v~~vE-----idp~-----------------------~~~~a--~~ 119 (269)
-+..|+++|+-.|..+..+++. .+..+|.++| ..+. +-++. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 4889999999999888776542 2467999999 3321 11111 11
Q ss_pred hcCccccccCCCCcEEEEEcccccc-------ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 120 FFALEKLEKSYPDRLFVYVGNALKA-------SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 120 ~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++..-+ ..+++++++.|++.+. ....++|+|++|+.. . -.+...|+.+..+|+|||++++.-+.
T Consensus 149 ~~~~~g---~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~---Y---~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 149 CSDFFG---HVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL---Y---EPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TTSTTT---TSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC---H---HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhhcC---CCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc---c---chHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 111100 0137899999999875 124579999999742 1 12568899999999999999996654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0076 Score=53.48 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=67.4
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-----cccccc---
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-----GNALKA--- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-----~D~~~~--- 144 (269)
+.+..+||++|+|+ |.++..+++.. +++ |++++.+++-.+.+++. .. .-+.... .|..+.
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~--------~~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CP--------EVVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CT--------TCEEEECCSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-ch--------hcccccccccchHHHHHHHHH
Confidence 56789999999875 77788888865 554 99999999999999987 31 1122221 111111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.....+|+|+- ... ....++.+.+.|+++|.+++--
T Consensus 247 ~t~g~g~Dvvid-~~g---------~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 247 SFGGIEPAVALE-CTG---------VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HTSSCCCSEEEE-CSC---------CHHHHHHHHHHSCTTCEEEECC
T ss_pred HhCCCCCCEEEE-CCC---------ChHHHHHHHHHhcCCCEEEEEc
Confidence 23568999984 322 2468899999999999998743
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0097 Score=52.99 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=65.4
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc-c--c
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK-A--S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~-~--~ 145 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++.. |..+ . .
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~l-Ga~----------~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQL-GAT----------HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHH-TCS----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc-CCC----------EEecCCccCHHHHHHHh
Confidence 456789999999876 77788888764 55 799999999999998764 321 12211 2111 1 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+.+|+|+- ... ..+.++.+.+.|+++|.+++-
T Consensus 255 ~~gg~D~vid-~~g---------~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 255 TDGGVNFALE-STG---------SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp TTSCEEEEEE-CSC---------CHHHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCcEEEE-CCC---------CHHHHHHHHHHHhcCCEEEEe
Confidence 2237999983 322 246889999999999998764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0041 Score=54.86 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=68.2
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--ccccc----cc
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALKA----SL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~~----~~ 146 (269)
.+.+..+||++|+|+ |.++..+++...+.+|++++.+++-.+.+++. +.. .++.. |..+. ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l-Ga~----------~~i~~~~~~~~~v~~~t~ 236 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV-GAD----------AAVKSGAGAADAIRELTG 236 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT-TCS----------EEEECSTTHHHHHHHHHG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC----------EEEcCCCcHHHHHHHHhC
Confidence 456789999999875 77888888766578999999999999999874 321 11211 11111 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+|+|+- ... ..+.++.+.+.|+++|.+++--
T Consensus 237 g~g~d~v~d-~~G---------~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 237 GQGATAVFD-FVG---------AQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp GGCEEEEEE-SSC---------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCeEEEE-CCC---------CHHHHHHHHHHHhcCCEEEEEC
Confidence 458999983 322 2468999999999999988643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0024 Score=56.26 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=67.5
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc--ccC
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA--SLK 147 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~--~~~ 147 (269)
.+.+..+||++|+|+ |.++..+++.. +++|++++.+++-.+.+++. +.. .++.. |..+. ...
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~----------~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL-GAE----------VAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-TCS----------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc-CCC----------EEEeCCCcCHHHHHHHhC
Confidence 456789999999875 88888888865 67999999999999998774 321 11211 11111 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+.+|+|+.... ..+.++.+.+.|+++|.+++.-
T Consensus 231 g~~d~vid~~g----------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 231 GGAHGVLVTAV----------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp SSEEEEEESSC----------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCEEEEeCC----------CHHHHHHHHHHhccCCEEEEeC
Confidence 37999985322 3578999999999999988643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.019 Score=43.71 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCcEEEEcCcc-c-HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFGA-G-SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~-G-~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..+|+.+|+|. | .++..|.+ .+.+|+++|.|++.++.+++. .+.++.+|+.+. ..-..+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~~------------g~~~i~gd~~~~~~l~~a~i~~a 72 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRER------------GVRAVLGNAANEEIMQLAHLECA 72 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHT------------TCEEEESCTTSHHHHHHTTGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHc------------CCCEEECCCCCHHHHHhcCcccC
Confidence 56899999973 3 33344433 477999999999998887652 257888998764 223579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|++...+.. .........+.+.|+..++.-..
T Consensus 73 d~vi~~~~~~~-------~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 73 KWLILTIPNGY-------EAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp SEEEECCSCHH-------HHHHHHHHHHHHCSSSEEEEEES
T ss_pred CEEEEECCChH-------HHHHHHHHHHHHCCCCeEEEEEC
Confidence 99987543221 12234445666778887766553
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0076 Score=53.00 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=66.4
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+.+..+||++|+|+ |.++..++++..+.+|++++.+++-.+.+++.-.. .-+.....|..+. .....
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~--------~~i~~~~~~~~~~v~~~t~g~g 232 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD--------VTINSGDVNPVDEIKKITGGLG 232 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS--------EEEEC-CCCHHHHHHHHTTSSC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe--------EEEeCCCCCHHHHhhhhcCCCC
Confidence 45788999999985 45555666656688999999999988888875321 1112112232221 34456
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|.++.+.. ..+.+..+.+.|+++|.+++..
T Consensus 233 ~d~~~~~~~----------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 233 VQSAIVCAV----------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEEECCS----------CHHHHHHHHHTEEEEEEEEECC
T ss_pred ceEEEEecc----------CcchhheeheeecCCceEEEEe
Confidence 888876532 3578899999999999987654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0086 Score=52.92 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=65.1
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc----
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~---- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++.. |..+.
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALEY-GAT----------DIINYKNGDIVEQILKA 230 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHHH-TCC----------EEECGGGSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCc----------eEEcCCCcCHHHHHHHH
Confidence 356789999999875 77777888754 55 899999999999998875 321 12211 21111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+|+ |... ..+.++.+.+.|+++|.++.-
T Consensus 231 t~g~g~D~v~-d~~g---------~~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 231 TDGKGVDKVV-IAGG---------DVHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp TTTCCEEEEE-ECSS---------CTTHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCCEEE-ECCC---------ChHHHHHHHHHHhcCCEEEEe
Confidence 2345799998 4322 135788899999999998764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0072 Score=53.35 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=65.4
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.+.+..+||++|+|+ |.++..+++.. +++|++++.+++-.+.+++ ++.. .++ .|...+. +.+|+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~-lGa~----------~v~-~~~~~~~--~~~D~ 237 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS-MGVK----------HFY-TDPKQCK--EELDF 237 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH-TTCS----------EEE-SSGGGCC--SCEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh-cCCC----------eec-CCHHHHh--cCCCE
Confidence 456789999999875 77788888764 6799999999999999877 3421 222 3433332 28999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+- .... .+.++.+.+.|+++|.+++--
T Consensus 238 vid-~~g~---------~~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 238 IIS-TIPT---------HYDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEE-CCCS---------CCCHHHHHTTEEEEEEEEECC
T ss_pred EEE-CCCc---------HHHHHHHHHHHhcCCEEEEEC
Confidence 984 3221 135778889999999998753
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.017 Score=51.14 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc----CCCeeE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL----KDGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~----~~~yD~ 152 (269)
+.+|+|+-||.|.+...+.+..-. ..|.++|+|+..++..+.++. ...++.+|..++.. ...+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~----------~~~~~~~Di~~~~~~~~~~~~~D~ 71 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLEEFDRLSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc----------ccccccCCHHHccHhHcCcCCcCE
Confidence 357999999999999999875211 369999999999999999874 23467899988721 126999
Q ss_pred EEEcCCCCCC-CC---CCCC------cHHHHHHHHhhcc--CCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 153 ILVDLFSKGS-LL---SELE------DPNTWEKLRQCLR--KGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 153 I~~d~~~~~~-~~---~~l~------~~e~~~~~~~~L~--pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
|+.+.+-... .. ..+. -.++++ +.+.++ |.=+++=|+.+-.. ...+..+++.|.+
T Consensus 72 l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~~~P~~~~~ENV~~l~~---------~~~~~~i~~~l~~ 138 (343)
T 1g55_A 72 ILMSPPCQPFTRIGRQGDMTDSRTNSFLHILD-ILPRLQKLPKYILLENVKGFEV---------SSTRDLLIQTIEN 138 (343)
T ss_dssp EEECCC------------------CHHHHHHH-HGGGCSSCCSEEEEEEETTGGG---------SHHHHHHHHHHHH
T ss_pred EEEcCCCcchhhcCCcCCccCccchHHHHHHH-HHHHhcCCCCEEEEeCCccccC---------HHHHHHHHHHHHH
Confidence 9987542211 10 0111 113333 445566 87666668865321 2245566666654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.017 Score=51.03 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=64.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc---cccc-----
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN---ALKA----- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D---~~~~----- 144 (269)
+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++..+ ..++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-Ga~----------~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEI-GAD----------LVLQISKESPQEIARKVE 236 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT-TCS----------EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-CCC----------EEEcCcccccchHHHHHH
Confidence 55788999999875 77888888865 56 999999999999998864 321 222211 1111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+.+|+|+- ... ....++.+.+.|+++|.++..
T Consensus 237 ~~~~~g~D~vid-~~g---------~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 237 GQLGCKPEVTIE-CTG---------AEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHTSCCSEEEE-CSC---------CHHHHHHHHHHSCTTCEEEEC
T ss_pred HHhCCCCCEEEE-CCC---------ChHHHHHHHHHhcCCCEEEEE
Confidence 11257999984 221 245788899999999998864
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.036 Score=48.85 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=64.1
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-c---cccc-c---c
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-G---NALK-A---S 145 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~---D~~~-~---~ 145 (269)
+.+..+||++|+|+ |..+..+++.. +++|++++.+++-.+.+++. +.. .++. . |..+ . .
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~----------~~~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC-GAD----------VTLVVDPAKEEESSIIERI 233 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-TCS----------EEEECCTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-CCC----------EEEcCcccccHHHHHHHHh
Confidence 55788999999874 77777777764 67899999999999998764 321 1221 1 1111 1 1
Q ss_pred c---CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 L---KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~---~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
. ...+|+|+-. .. ....++.+.+.|+++|.++.-
T Consensus 234 ~~~~g~g~D~vid~-~g---------~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 234 RSAIGDLPNVTIDC-SG---------NEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHSSSCCSEEEEC-SC---------CHHHHHHHHHHSCTTCEEEEC
T ss_pred ccccCCCCCEEEEC-CC---------CHHHHHHHHHHHhcCCEEEEE
Confidence 1 3579999842 21 245788899999999998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.028 Score=49.84 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=64.6
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------c
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~ 145 (269)
.+.+..+||++|+|+ |..+..+++.. +++|++++.+++-.+.+++. +.. .++..+..++ .
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL-GAD----------HGINRLEEDWVERVYALT 253 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH-TCS----------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc-CCC----------EEEcCCcccHHHHHHHHh
Confidence 456789999999775 77777777764 67999999999999998774 321 2222221121 2
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
....+|+|+-.. .. +.++.+.+.|+++|.+++-.
T Consensus 254 ~g~g~D~vid~~-g~----------~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 254 GDRGADHILEIA-GG----------AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp TTCCEEEEEEET-TS----------SCHHHHHHHEEEEEEEEEEC
T ss_pred CCCCceEEEECC-Ch----------HHHHHHHHHhhcCCEEEEEe
Confidence 345799998432 21 24677888999999988754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.015 Score=51.92 Aligned_cols=94 Identities=15% Similarity=0.269 Sum_probs=62.9
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCe
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~y 150 (269)
.+.+..+||++|+|+ |.++..+++.. +++|++++.+++-.+.+++ ++.. .++...-.++ ...+.+
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~-lGa~----------~vi~~~~~~~~~~~~~g~ 258 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA-LGAD----------EVVNSRNADEMAAHLKSF 258 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH-HTCS----------EEEETTCHHHHHTTTTCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCc----------EEeccccHHHHHHhhcCC
Confidence 356789999999875 77777888764 7789999999999999886 4421 1121111111 112579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+-.. .. ...++.+.+.|+++|.++.-
T Consensus 259 Dvvid~~-g~---------~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 259 DFILNTV-AA---------PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEEEECC-SS---------CCCHHHHHTTEEEEEEEEEC
T ss_pred CEEEECC-CC---------HHHHHHHHHHhccCCEEEEe
Confidence 9998432 21 12467788899999988763
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0074 Score=54.35 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=66.2
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---ccc-cc-c---
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNA-LK-A--- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~-~~-~--- 144 (269)
+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +. +++. .|. .+ .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-Ga-----------~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDA-GF-----------ETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTT-TC-----------EEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc-CC-----------cEEcCCCcchHHHHHHHH
Confidence 45788999999986 88888888865 56 999999999999998753 32 1221 122 11 1
Q ss_pred ccCCCeeEEEEcCCCCCCC-----CCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSL-----LSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~-----~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+||- ....... ..++.....++.+.+.|+++|.+++-
T Consensus 250 ~~g~g~Dvvid-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 250 LGKPEVDCGVD-AVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp HSSSCEEEEEE-CSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred hCCCCCCEEEE-CCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 22347999984 3322110 00111235789999999999998763
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.01 Score=52.26 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE----cccc-cccc
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV----GNAL-KASL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~----~D~~-~~~~ 146 (269)
.+ +..+||++|+|+ |.++..+++.. |+++|++++.+++-.+.+++. +.. .++. .|.. +...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~~~~~ 235 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-GAD----------YVSEMKDAESLINKLTD 235 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-TCS----------EEECHHHHHHHHHHHHT
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-CCC----------EEeccccchHHHHHhhc
Confidence 45 889999999864 66777777653 478999999999999998863 321 1111 1111 1123
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+|+|+- ... ..+.++.+.+.|+++|.++.-
T Consensus 236 g~g~D~vid-~~g---------~~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 236 GLGASIAID-LVG---------TEETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp TCCEEEEEE-SSC---------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCccEEEE-CCC---------ChHHHHHHHHHhhcCCEEEEe
Confidence 447999984 322 245889999999999998763
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.027 Score=50.72 Aligned_cols=96 Identities=22% Similarity=0.202 Sum_probs=63.0
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc----
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~---- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++.. |..+.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~i~~~ 277 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAKEL-GAD----------HVIDPTKENFVEAVLDY 277 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHHH-TCS----------EEECTTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHc-CCC----------EEEcCCCCCHHHHHHHH
Confidence 356789999999864 67777777765 55 999999999999999875 321 12211 21111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhc----cCCcEEEEEe
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL----RKGGRIMVNV 190 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L----~pgG~l~~~~ 190 (269)
.....+|+|+ |+... ....+..+.+.| +++|.+++--
T Consensus 278 t~g~g~D~vi-d~~g~--------~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 278 TNGLGAKLFL-EATGV--------PQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp TTTCCCSEEE-ECSSC--------HHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred hCCCCCCEEE-ECCCC--------cHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 2345799998 33221 123566666666 9999988743
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.03 Score=49.91 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=65.8
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---cccccc----
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~~~~---- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++. .|..+.
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-Ga~----------~vi~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAEEV-GAT----------ATVDPSAGDVVEAIAGP 246 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHHH-TCS----------EEECTTSSCHHHHHHST
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHc-CCC----------EEECCCCcCHHHHHHhh
Confidence 356789999999875 77778888865 55 999999999999998874 321 1111 121111
Q ss_pred --ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 --SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+.+|+||- ... ..+.++.+.+.|+++|.+++-
T Consensus 247 ~~~~~gg~Dvvid-~~G---------~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 247 VGLVPGGVDVVIE-CAG---------VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TSSSTTCEEEEEE-CSC---------CHHHHHHHHHHEEEEEEEEEC
T ss_pred hhccCCCCCEEEE-CCC---------CHHHHHHHHHHhccCCEEEEE
Confidence 11247999983 322 257889999999999998874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.012 Score=52.50 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-----ccccc--
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-----NALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-----D~~~~-- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.|++. +.. .++.. |..+.
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~~l-Ga~----------~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAKKF-GVN----------EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHHTT-TCC----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-CCc----------EEEccccCchhHHHHHH
Confidence 456789999999873 77777787764 55 899999999999998764 321 11211 11111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
...+.+|+|+- ... ..+.++.+.+.|+++ |.+++--
T Consensus 258 ~~~~gg~D~vid-~~g---------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 258 DLTDGGVDYSFE-CIG---------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHTTSCBSEEEE-CSC---------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HhcCCCCCEEEE-CCC---------CHHHHHHHHHHhhccCCEEEEEc
Confidence 12348999983 322 357889999999997 9887643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.018 Score=51.26 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCCcEEEEc-Cc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--ccccc-c--ccCCC
Q 035593 77 PPGPIGILG-FG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALK-A--SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG-~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~-~--~~~~~ 149 (269)
+..+||++| +| .|.++..+++...+++|++++.+++-.+.+++ ++.. .++. .|..+ . ...+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~-lGad----------~vi~~~~~~~~~v~~~~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS-LGAH----------HVIDHSKPLAAEVAALGLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-TTCS----------EEECTTSCHHHHHHTTCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-cCCC----------EEEeCCCCHHHHHHHhcCCC
Confidence 567899998 43 57888888886567899999999999999876 3421 1111 11111 1 23457
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+- +.. ..+.++.+.+.|+++|.+++-
T Consensus 240 ~Dvvid-~~g---------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFS-TTH---------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEE-CSC---------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEE-CCC---------chhhHHHHHHHhcCCCEEEEE
Confidence 999873 221 346889999999999999864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.034 Score=49.86 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=66.6
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---c-ccc-c--
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---N-ALK-A-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D-~~~-~-- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-++.+++. +. +++.- | ..+ .
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~~l-Ga-----------~~i~~~~~~~~~~~v~~ 248 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQ-GF-----------EIADLSLDTPLHEQIAA 248 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT-TC-----------EEEETTSSSCHHHHHHH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHc-CC-----------cEEccCCcchHHHHHHH
Confidence 355788999999875 78888888875 55 899999999999999764 31 12211 1 111 1
Q ss_pred -ccCCCeeEEEEcCCCCCCC------CCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSL------LSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~------~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+||- ....... ..+....+.++.+.+.|+++|.+++.
T Consensus 249 ~t~g~g~Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 249 LLGEPEVDCAVD-AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp HHSSSCEEEEEE-CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCCCEEEE-CCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 23357999984 3222100 01112345789999999999998764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.042 Score=47.97 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=64.9
Q ss_pred CCCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---cccccc---
Q 035593 73 PPILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNALKA--- 144 (269)
Q Consensus 73 ~~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~~~~--- 144 (269)
..+.+.++||++|+ |.|..+..+++.. +++|++++.+++-.+.+.+.++.. .++. .|..+.
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~~~ 213 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFD----------GAIDYKNEDLAAGLKR 213 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCS----------EEEETTTSCHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCC----------EEEECCCHHHHHHHHH
Confidence 34667899999998 4577777777754 679999999999998885555421 1111 111111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+.+|+|+-.+- .+.++.+.+.|+++|.+++-
T Consensus 214 ~~~~~~d~vi~~~g-----------~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 214 ECPKGIDVFFDNVG-----------GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HCTTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred hcCCCceEEEECCC-----------cchHHHHHHHHhhCCEEEEE
Confidence 12457999984321 25788899999999998763
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.014 Score=50.64 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=59.5
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.+.+..+||++|+| .|.++..+++.. +++|++++ +++-.+.+++. +.. .++ .|..+. .+.+|+
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l-Ga~----------~v~-~d~~~v--~~g~Dv 202 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR-GVR----------HLY-REPSQV--TQKYFA 202 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH-TEE----------EEE-SSGGGC--CSCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc-CCC----------EEE-cCHHHh--CCCccE
Confidence 35678999999996 377778888764 67999999 99888888773 421 222 242222 678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+ |+... +.+..+.+.|+++|.++.-
T Consensus 203 v~-d~~g~----------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 203 IF-DAVNS----------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp EE-CC-----------------TTGGGEEEEEEEEEE
T ss_pred EE-ECCCc----------hhHHHHHHHhcCCCEEEEE
Confidence 98 43322 1225567899999998875
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0073 Score=51.28 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
.+...|||..||+|+.+.++.+ -+.+++++|++|..++.|++++.
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~--~gr~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKK--LGRNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHH
Confidence 4678899999999999999887 37899999999999999999874
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.024 Score=49.66 Aligned_cols=99 Identities=13% Similarity=-0.001 Sum_probs=65.5
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
.+.+..+||+.|+|+ |.++..+++......+++++.+++-.+.|++. +... -+.....|..+. ....
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l-Ga~~-------~i~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF-GAMQ-------TFNSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCSE-------EEETTTSCHHHHHHHHGGGC
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc-CCeE-------EEeCCCCCHHHHHHhhcccC
Confidence 355789999999874 55666777766556789999999999998875 3210 011111122221 3445
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+- ... ..+.++.+.+.|+++|.+++..
T Consensus 229 g~d~v~d-~~G---------~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 229 FNQLILE-TAG---------VPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp SSEEEEE-CSC---------SHHHHHHHHHHCCTTCEEEECC
T ss_pred Ccccccc-ccc---------ccchhhhhhheecCCeEEEEEe
Confidence 6888873 321 3578899999999999988744
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.048 Score=48.45 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-c----ccccc--
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-G----NALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~----D~~~~-- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++. . |..+.
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVF-GAT----------DFVNPNDHSEPISQVLS 256 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT-TCC----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh-CCc----------eEEeccccchhHHHHHH
Confidence 456788999999864 77777888765 55 899999999999998763 321 1111 1 11111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
...+.+|+|+- ... ..+.++.+.+.|+++ |.+++.
T Consensus 257 ~~~~~g~D~vid-~~g---------~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 257 KMTNGGVDFSLE-CVG---------NVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHTSCBSEEEE-CSC---------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCCCEEEE-CCC---------CHHHHHHHHHHhhcCCcEEEEE
Confidence 12247999984 221 246789999999999 998764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.014 Score=46.86 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=60.0
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c---c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~---~ 145 (269)
.+.+.++||++|+ |.|..+..+++. .+.+|++++.+++..+.+++. +. ...+-.. |..+ . .
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~~~~~~~~~~~~~~-g~---------~~~~d~~~~~~~~~~~~~~ 103 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKM-IGARIYTTAGSDAKREMLSRL-GV---------EYVGDSRSVDFADEILELT 103 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHTT-CC---------SEEEETTCSTHHHHHHHHT
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHc-CC---------CEEeeCCcHHHHHHHHHHh
Confidence 4567889999995 445555555554 367999999999988877652 21 1111111 1111 1 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
....+|+|+..+ . .+.++.+.+.|+++|.++.-
T Consensus 104 ~~~~~D~vi~~~-g----------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 104 DGYGVDVVLNSL-A----------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTCCEEEEEECC-C----------THHHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECC-c----------hHHHHHHHHHhccCCEEEEE
Confidence 234699998532 1 25788899999999988763
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.96 E-value=0.22 Score=43.70 Aligned_cols=121 Identities=12% Similarity=-0.035 Sum_probs=78.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
..+++|+.||+|.+...+... .-..+.++|+|+..++..+.++.. .. .+|..++ ..-..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~--------~~----~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE--------KP----EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC--------CC----BSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCC--------CC----cCCHHHcCHhhCCCCCEEEE
Confidence 468999999999999999873 233688899999999999998742 11 5888887 23346999998
Q ss_pred cCCCCCCC----CCCC------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 156 DLFSKGSL----LSEL------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 156 d~~~~~~~----~~~l------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
+.+-.... ...+ .-.++++.+ +.++|.-+++=|+.+-.. .+....+..+++.|.+.
T Consensus 78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i-~~~~P~~~~~ENV~gl~~------~~~~~~~~~i~~~l~~~ 143 (327)
T 2c7p_A 78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIV-REKKPKVVFMENVKNFAS------HDNGNTLEVVKNTMNEL 143 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCSEEEEEEEGGGGT------GGGGHHHHHHHHHHHHT
T ss_pred CCCCCCcchhcccCCCcchhhHHHHHHHHHH-HhccCcEEEEeCcHHHHh------ccccHHHHHHHHHHHhC
Confidence 75333211 1001 112455444 457898777778865321 01123456666666653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.06 Score=47.82 Aligned_cols=94 Identities=17% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-c----ccccc--
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-G----NALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~----D~~~~-- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++. . |..+.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-Ga~----------~vi~~~~~~~~~~~~i~ 255 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIEL-GAT----------ECLNPKDYDKPIYEVIC 255 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHT-TCS----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc-CCc----------EEEecccccchHHHHHH
Confidence 456789999999864 67777777764 55 899999999999998753 321 1111 1 11111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
...+.+|+|+- ... ..+.++.+.+.|+++ |.++..
T Consensus 256 ~~t~gg~Dvvid-~~g---------~~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 256 EKTNGGVDYAVE-CAG---------RIETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHTTSCBSEEEE-CSC---------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCCCEEEE-CCC---------CHHHHHHHHHHHhcCCCEEEEE
Confidence 12248999983 322 246889999999999 998764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.94 E-value=0.06 Score=47.80 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-c----ccccc--
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-G----NALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~----D~~~~-- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++. . |..+.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~~~~~ 255 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEV-GAT----------ECVNPQDYKKPIQEVLT 255 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT-TCS----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh-CCc----------eEecccccchhHHHHHH
Confidence 456789999999875 77777787765 55 899999999999998753 321 1111 1 11111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
...+.+|+|+- ... ..+.++.+.+.|+++ |.+++-
T Consensus 256 ~~~~~g~D~vid-~~g---------~~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 256 EMSNGGVDFSFE-VIG---------RLDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHTTSCBSEEEE-CSC---------CHHHHHHHHHHBCTTTCEEEEC
T ss_pred HHhCCCCcEEEE-CCC---------CHHHHHHHHHHhhcCCcEEEEe
Confidence 12247999983 321 246788999999999 998764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.041 Score=49.15 Aligned_cols=93 Identities=20% Similarity=0.174 Sum_probs=63.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc------cccc-c-
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG------NALK-A- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~------D~~~-~- 144 (269)
+.+..+||++|+| .|.++..+++.. + .+|++++.+++-.+.+++ ++.. .++.. |..+ .
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~-lGa~----------~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEE-IGAD----------LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHH-TTCS----------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHH-cCCc----------EEEeccccCcchHHHHHH
Confidence 5678899999966 467777777765 6 599999999999999885 3321 12221 1111 1
Q ss_pred --ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 --SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+||-. .. ..+.++.+.+.|+++|.++.-
T Consensus 261 ~~~~g~g~Dvvid~-~g---------~~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 261 DITHGRGADFILEA-TG---------DSRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHTTTSCEEEEEEC-SS---------CTTHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCCcEEEEC-CC---------CHHHHHHHHHHHhcCCEEEEE
Confidence 223479999843 22 124678889999999998764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.07 Score=47.33 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-c----ccccc--
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-G----NALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~----D~~~~-- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++. . |..+.
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~~~v~ 254 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEF-GAT----------ECINPQDFSKPIQEVLI 254 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHH-TCS----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-CCc----------eEeccccccccHHHHHH
Confidence 456788999999864 67777777754 55 899999999999998864 321 1111 1 11111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
...+.+|+|+- ... ..+.++.+.+.|+++ |.+++.
T Consensus 255 ~~~~~g~D~vid-~~g---------~~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 255 EMTDGGVDYSFE-CIG---------NVKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHTTSCBSEEEE-CSC---------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCCCEEEE-CCC---------cHHHHHHHHHhhccCCcEEEEE
Confidence 12247999984 321 246789999999999 998764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.027 Score=50.17 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=64.4
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-c----ccccc--
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-G----NALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~----D~~~~-- 144 (269)
.+.+..+||++|+|+ |.++..+++.. ++ +|++++.+++-.+.+++. +.. .++. . |..+.
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-Ga~----------~vi~~~~~~~~~~~~v~ 259 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKAL-GAT----------DCLNPRELDKPVQDVIT 259 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT-TCS----------EEECGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh-CCc----------EEEccccccchHHHHHH
Confidence 456788999999864 77777888765 55 899999999999998763 321 1111 1 11111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
...+.+|+|+ |... ..+.++.+.+.|+++ |.+++.
T Consensus 260 ~~~~~g~Dvvi-d~~G---------~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 260 ELTAGGVDYSL-DCAG---------TAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHTSCBSEEE-ESSC---------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCccEEE-ECCC---------CHHHHHHHHHHhhcCCCEEEEE
Confidence 1224799998 3322 246889999999999 998764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.025 Score=50.75 Aligned_cols=102 Identities=17% Similarity=0.012 Sum_probs=70.6
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---------cCC
Q 035593 79 GPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---------LKD 148 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---------~~~ 148 (269)
-+++|+-||.|.++..+.+. +. .+.++|+|+..++..+.++. ...++.+|..++. ...
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~----------~~~~~~~DI~~~~~~~~~~~~~~~~ 70 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP----------RSLHVQEDVSLLNAEIIKGFFKNDM 70 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT----------TSEEECCCGGGCCHHHHHHHHCSCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC----------CCceEecChhhcCHHHHHhhcccCC
Confidence 47999999999999999875 44 57799999999999888763 3578889998871 246
Q ss_pred CeeEEEEcCCCCCCC-CC--CCC------cHHHHHHHHhhccCCcEEEEEecCC
Q 035593 149 GFSGILVDLFSKGSL-LS--ELE------DPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~-~~--~l~------~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+|+|+.+.+-.... .. ... ..++++ +.+.++|.=+++=|+.+-
T Consensus 71 ~~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~-~v~~~~P~~~v~ENV~gl 123 (376)
T 3g7u_A 71 PIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYR-LVSELQPLFFLAENVPGI 123 (376)
T ss_dssp CCCEEEECCCCCTTC-------CHHHHHHHHHHHH-HHHHHCCSEEEEEECTTT
T ss_pred CeeEEEecCCCCCcccccCCCCCCchHHHHHHHHH-HHHHhCCCEEEEecchHh
Confidence 899999875433211 00 111 123333 445678987777788654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.07 Score=46.69 Aligned_cols=95 Identities=9% Similarity=0.082 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc---c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~---~ 145 (269)
.+.+.++||++|+ |.|..+..+++.. +++|++++.+++-.+.+++.++.. ..+-.. |..+. .
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~---------~~~d~~~~~~~~~~~~~~ 221 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFD---------DAFNYKEESDLTAALKRC 221 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCS---------EEEETTSCSCSHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCc---------eEEecCCHHHHHHHHHHH
Confidence 4567889999997 4667777777654 679999999999998888555421 111111 11111 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+.+|+|+.... .+.++.+.+.|+++|.+++.
T Consensus 222 ~~~~~d~vi~~~g-----------~~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 222 FPNGIDIYFENVG-----------GKMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp CTTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred hCCCCcEEEECCC-----------HHHHHHHHHHHhcCCEEEEE
Confidence 2357999985321 25788899999999998763
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.067 Score=42.31 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=56.9
Q ss_pred CCcEEEEcCcc-c-HHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c--cCC
Q 035593 78 PGPIGILGFGA-G-SAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S--LKD 148 (269)
Q Consensus 78 ~~~VL~iG~G~-G-~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~--~~~ 148 (269)
..+|+++|+|. | .++..|.+ . +.+|+++|.+++.++.+++. + +.++.+|+.+. . .-.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~~~~~~~~~~-g-----------~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIREEAAQQHRSE-G-----------RNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCHHHHHHHHHT-T-----------CCEEECCTTCHHHHHTBCSCC
T ss_pred CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCHHHHHHHHHC-C-----------CCEEEcCCCCHHHHHhccCCC
Confidence 56899999872 2 23334433 3 67899999999888776642 1 45667777543 2 245
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+|+|++...+.. .....-...+.+.|++.++....
T Consensus 105 ~ad~vi~~~~~~~-------~~~~~~~~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 105 HVKLVLLAMPHHQ-------GNQTALEQLQRRNYKGQIAAIAE 140 (183)
T ss_dssp CCCEEEECCSSHH-------HHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCEEEEeCCChH-------HHHHHHHHHHHHCCCCEEEEEEC
Confidence 7999997443210 12223334556677777776553
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.046 Score=49.64 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=62.3
Q ss_pred CCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFGA-GS-AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..+|+++|+|. |. +++.|.+ .+..|++||.|++.++.+++. .+.++.+|+.+. ..-...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~~~v~~~~~~------------g~~vi~GDat~~~~L~~agi~~A 69 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKA 69 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHHT------------TCCCEESCTTCHHHHHHTTTTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHhC------------CCeEEEcCCCCHHHHHhcCCCcc
Confidence 45799999872 33 3333333 478999999999999988753 257888999875 234689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|++...+.. .........+.+.|+..+++-..
T Consensus 70 ~~viv~~~~~~-------~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 70 EVLINAIDDPQ-------TNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp SEEEECCSSHH-------HHHHHHHHHHHHCTTCEEEEEES
T ss_pred CEEEECCCChH-------HHHHHHHHHHHhCCCCeEEEEEC
Confidence 99987543321 23445555666778776666554
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.064 Score=47.13 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc----ccC
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA----SLK 147 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~----~~~ 147 (269)
+..+||++|+|+ |..+..+++.. ++ +|++++.+++-.+.+++. +.. .++.. |..+. ...
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~-Ga~----------~~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKV-GAD----------YVINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHH-TCS----------EEECTTTSCHHHHHHHHTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-CCC----------EEECCCCcCHHHHHHHHcCC
Confidence 789999999863 67777777764 66 999999999999988764 321 11111 11111 223
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+|+|+-.. . ..+.++.+.+.|+++|.++..
T Consensus 235 ~g~D~vid~~-g---------~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 235 NGVDVFLEFS-G---------APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp SCEEEEEECS-C---------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-C---------CHHHHHHHHHHHhcCCEEEEE
Confidence 4799998432 1 246788999999999988764
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.094 Score=40.22 Aligned_cols=97 Identities=12% Similarity=-0.037 Sum_probs=60.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECC-hHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELD-PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEid-p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
..+|+++|+| .++..+.+.. .+.+|+++|.+ ++..+..++.+. ..+.++.+|+.+. ..-+.
T Consensus 3 ~~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a~i~~ 71 (153)
T 1id1_A 3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---------DNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---------TTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc---------CCCeEEEcCCCCHHHHHHcChhh
Confidence 4689999864 4444444322 36799999998 454444443321 2478899998764 12467
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.|+|++...+.. .........+.+.|...++....+
T Consensus 72 ad~vi~~~~~d~-------~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 72 CRAILALSDNDA-------DNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp CSEEEECSSCHH-------HHHHHHHHHHHHTSSSCEEEECSS
T ss_pred CCEEEEecCChH-------HHHHHHHHHHHHCCCCEEEEEECC
Confidence 899987543211 234555566677777777776644
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.11 Score=38.59 Aligned_cols=91 Identities=14% Similarity=0.038 Sum_probs=53.9
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
.+|+.+|+| .++..+++.. .+.+|+++|.+++.++..++.++ +.++.+|..+. ..-..+|
T Consensus 5 m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~l~~~~~~~~d 71 (140)
T 1lss_A 5 MYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID-----------ALVINGDCTKIKTLEDAGIEDAD 71 (140)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS-----------SEEEESCTTSHHHHHHTTTTTCS
T ss_pred CEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcC-----------cEEEEcCCCCHHHHHHcCcccCC
Confidence 479999875 3443333221 36789999999988776654332 45566776543 1235799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|++...+. .....+..+.+.+.++ .+++..
T Consensus 72 ~vi~~~~~~-------~~~~~~~~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGKE-------EVNLMSSLLAKSYGIN-KTIARI 102 (140)
T ss_dssp EEEECCSCH-------HHHHHHHHHHHHTTCC-CEEEEC
T ss_pred EEEEeeCCc-------hHHHHHHHHHHHcCCC-EEEEEe
Confidence 999754321 1223445556667775 444433
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.12 Score=44.95 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=61.2
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc---cccc---c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN---ALKA---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D---~~~~---~ 145 (269)
.+.+.++||+.|+ |.|..+..+++. .+++|++++.+++-.+.+++ ++.. ..+-..| ..+. .
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~~~~~~~~~~~~~-~g~~---------~~~d~~~~~~~~~~~~~~ 210 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKL-KGCKVVGAAGSDEKIAYLKQ-IGFD---------AAFNYKTVNSLEEALKKA 210 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHH-TTCS---------EEEETTSCSCHHHHHHHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHh-cCCc---------EEEecCCHHHHHHHHHHH
Confidence 4557889999997 456666666664 36799999999998888844 3321 1111111 1111 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+.+|+++..+- .+.++.+.+.|+++|.+++.
T Consensus 211 ~~~~~d~vi~~~g-----------~~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 211 SPDGYDCYFDNVG-----------GEFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp CTTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred hCCCCeEEEECCC-----------hHHHHHHHHHHhcCCEEEEE
Confidence 2257999985431 24578888999999998763
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.031 Score=43.18 Aligned_cols=100 Identities=13% Similarity=-0.003 Sum_probs=54.9
Q ss_pred CCCCCCCcEEEEcCcc-cHH-HHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c-
Q 035593 73 PPILPPGPIGILGFGA-GSA-ARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S- 145 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~-G~~-~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~- 145 (269)
|...+..+|+++|+|. |.. +..|.+ .+.+|+++|.+++.++.+++. ..+.++.+|..+. .
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~~~~~~~~~-----------~g~~~~~~d~~~~~~l~~~ 80 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEYAFHRLNSE-----------FSGFTVVGDAAEFETLKEC 80 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGGGGSCTT-----------CCSEEEESCTTSHHHHHTT
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHhc-----------CCCcEEEecCCCHHHHHHc
Confidence 3334678999999863 322 233333 367999999998765443211 1245666776442 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.-..+|+|+....+.. .......+.+.+.+...++....+
T Consensus 81 ~~~~ad~Vi~~~~~~~-------~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 81 GMEKADMVFAFTNDDS-------TNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp TGGGCSEEEECSSCHH-------HHHHHHHHHHHTSCCSEEEEECSS
T ss_pred CcccCCEEEEEeCCcH-------HHHHHHHHHHHHCCCCeEEEEECC
Confidence 1356899997543210 223344444555566666665543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.12 Score=38.77 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=56.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
.++|+.+|+|. ++..+++.+ .+.+|+++|.+++.++.+++. .+.++.+|+.+. ..-..+
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------------GFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------------TCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------------CCcEEECCCCCHHHHHhCCcccC
Confidence 45899999863 443333322 367999999999988776652 257788888764 123578
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|++...+. ..........+.+. ...++.-..
T Consensus 72 d~vi~~~~~~-------~~n~~~~~~a~~~~-~~~iia~~~ 104 (141)
T 3llv_A 72 SAVLITGSDD-------EFNLKILKALRSVS-DVYAIVRVS 104 (141)
T ss_dssp SEEEECCSCH-------HHHHHHHHHHHHHC-CCCEEEEES
T ss_pred CEEEEecCCH-------HHHHHHHHHHHHhC-CceEEEEEc
Confidence 9998743321 01223334444555 555555553
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.022 Score=50.49 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=60.7
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc-cc--ccCCC
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL-KA--SLKDG 149 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~-~~--~~~~~ 149 (269)
.+.+..+||++|+|+ |.++..+++.. +++|++++.+++-.+.+++ ++.. .++..+-. ++ ...+.
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~-lGa~----------~v~~~~~~~~~~~~~~~~ 243 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK-MGAD----------HYIATLEEGDWGEKYFDT 243 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH-HTCS----------EEEEGGGTSCHHHHSCSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH-cCCC----------EEEcCcCchHHHHHhhcC
Confidence 356789999999853 67777777754 6789999999998898887 3421 12211111 22 11157
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+-..... . .+.++.+.+.|+++|.++.-
T Consensus 244 ~D~vid~~g~~---~-----~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 244 FDLIVVCASSL---T-----DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEEEECCSCS---T-----TCCTTTGGGGEEEEEEEEEC
T ss_pred CCEEEECCCCC---c-----HHHHHHHHHHhcCCCEEEEe
Confidence 99998433220 0 12344566789999988753
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.022 Score=49.97 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=61.5
Q ss_pred CCCCCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc----
Q 035593 74 PILPPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~---- 144 (269)
.+.+..+||++|+| .|..+..+++.. +++|++++.+++-.+.+++. +.. .++.. |..+.
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l-ga~----------~~~~~~~~~~~~~~~~~ 208 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRL-GAA----------YVIDTSTAPLYETVMEL 208 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH-TCS----------EEEETTTSCHHHHHHHH
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhC-CCc----------EEEeCCcccHHHHHHHH
Confidence 46678999999987 567777777654 67999999999999988874 321 11211 11111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.....+|+|+-.+. ...+ ....+.|+++|.+++-.
T Consensus 209 ~~~~g~Dvvid~~g----------~~~~-~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 209 TNGIGADAAIDSIG----------GPDG-NELAFSLRPNGHFLTIG 243 (340)
T ss_dssp TTTSCEEEEEESSC----------HHHH-HHHHHTEEEEEEEEECC
T ss_pred hCCCCCcEEEECCC----------ChhH-HHHHHHhcCCCEEEEEe
Confidence 23457999984321 1223 34458999999988743
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.06 Score=48.22 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=58.0
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++++|+++|+| .|..+..+++.+ +++|+++|.+++-++.+++.++. .+.+...+..++ ..-...|+|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~---------~~~~~~~~~~~l~~~l~~aDvVi 236 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCG---------RIHTRYSSAYELEGAVKRADLVI 236 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT---------SSEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCC---------eeEeccCCHHHHHHHHcCCCEEE
Confidence 47899999986 233334444433 67999999999988888776542 122222121122 1123689999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.....+....+++.. +.+.+.|+|||+++ |+.
T Consensus 237 ~~~~~p~~~t~~li~----~~~l~~mk~g~~iV-~va 268 (377)
T 2vhw_A 237 GAVLVPGAKAPKLVS----NSLVAHMKPGAVLV-DIA 268 (377)
T ss_dssp ECCCCTTSCCCCCBC----HHHHTTSCTTCEEE-EGG
T ss_pred ECCCcCCCCCcceec----HHHHhcCCCCcEEE-EEe
Confidence 754332211223333 34556788988764 553
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.076 Score=46.51 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=63.2
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---ccccc-c-ccC
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNALK-A-SLK 147 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~~~-~-~~~ 147 (269)
.+.+..+||++|+| .|..+..+++.. +++|++++.+++-.+.+++ ++.. .++. .|..+ . ...
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~-lGa~----------~~~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE-LGAD----------LVVNPLKEDAAKFMKEKV 228 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH-TTCS----------EEECTTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-CCCC----------EEecCCCccHHHHHHHHh
Confidence 35578899999986 366777777754 6799999999999998876 3321 1111 11111 1 111
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+.+|+|+-.. . ..+.++.+.+.|+++|.++..
T Consensus 229 ~~~d~vid~~-g---------~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 229 GGVHAAVVTA-V---------SKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SSEEEEEESS-C---------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-C---------CHHHHHHHHHHhhcCCEEEEe
Confidence 5799998432 1 246788899999999988764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.081 Score=43.17 Aligned_cols=91 Identities=9% Similarity=-0.081 Sum_probs=57.9
Q ss_pred cEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeE
Q 035593 80 PIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSG 152 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~ 152 (269)
+|+.+|+| .++..+++.. .+.+|+++|.|++.++...+.. .+.++.+|+.+. ..-...|+
T Consensus 2 ~iiIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-----------~~~~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 2 KVIIIGGE--TTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-----------KATIIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CEEEECCH--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-----------SSEEEESCTTSHHHHHHHTCCTTCE
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-----------CCeEEEcCCCCHHHHHhcCcccCCE
Confidence 68999875 4444444322 3679999999999887655443 257889998874 23467899
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|++...+.. ...+.....+.+.+...++.-.
T Consensus 69 vi~~~~~d~-------~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 69 VVILTPRDE-------VNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp EEECCSCHH-------HHHHHHHHHHHTSCCCEEEECC
T ss_pred EEEecCCcH-------HHHHHHHHHHHHcCCCeEEEEE
Confidence 987543211 2344555556666666666544
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.054 Score=47.61 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=62.6
Q ss_pred CCCCCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc--ccc-c--cc
Q 035593 74 PILPPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN--ALK-A--SL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D--~~~-~--~~ 146 (269)
.+.+.++||++|+| .|..+..+++...+++|++++.+++-.+.+++. +.. ..+-..| ..+ . ..
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~ 236 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GAD---------YVINASMQDPLAEIRRIT 236 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TCS---------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCC---------EEecCCCccHHHHHHHHh
Confidence 35578899999987 455556666653367999999999999888763 321 1111111 111 1 11
Q ss_pred C-CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 K-DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~-~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
. +.+|+|+-.+- ..+.++.+.+.|+++|.++.-
T Consensus 237 ~~~~~d~vi~~~g----------~~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 237 ESKGVDAVIDLNN----------SEKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TTSCEEEEEESCC----------CHHHHTTGGGGEEEEEEEEEC
T ss_pred cCCCceEEEECCC----------CHHHHHHHHHHHhcCCEEEEE
Confidence 2 48999985321 245788889999999988763
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.031 Score=50.64 Aligned_cols=48 Identities=8% Similarity=-0.029 Sum_probs=41.3
Q ss_pred CCCCcEEEEcCcccHHHHHHH-HHCCC-ceEEEEECChHHHHHHHHhcCc
Q 035593 76 LPPGPIGILGFGAGSAARLIL-DLYPE-AVIHGWELDPSVIKVAREFFAL 123 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~-~~~p~-~~v~~vEidp~~~~~a~~~~~~ 123 (269)
.+...++|||++.|..+..++ +..+. .+|+++|.+|...+..++++..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 467899999999999999887 55654 7999999999999999987653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.082 Score=46.11 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=63.2
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc----
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~---- 144 (269)
.+.+.++||++|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. .++.. |..+.
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-ga~----------~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY-GAE----------YLINASKEDILRQVLKF 212 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCS----------EEEETTTSCHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCc----------EEEeCCCchHHHHHHHH
Confidence 4567899999994 4567777777754 77999999999999988774 321 11211 11111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+|+-... .+.++.+.+.|+++|.++..
T Consensus 213 ~~~~g~D~vid~~g-----------~~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 213 TNGKGVDASFDSVG-----------KDTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTTSCEEEEEECCG-----------GGGHHHHHHHEEEEEEEEEC
T ss_pred hCCCCceEEEECCC-----------hHHHHHHHHHhccCCEEEEE
Confidence 23457999984321 14678888999999998874
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.068 Score=47.51 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=57.0
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++++||++|+| .|..+..+++.. +++|+++|.+++-.+.+++.+.. .+.++..+..++ ..-..+|+|+
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc---------eeEeeeCCHHHHHHHHcCCCEEE
Confidence 35899999986 344444445543 56999999999988888766531 223332222222 1123689998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
.....+....+.+.. +...+.|+++|+++-
T Consensus 236 ~~~~~~~~~~~~li~----~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 236 GAVLVPGRRAPILVP----ASLVEQMRTGSVIVD 265 (361)
T ss_dssp ECCCCTTSSCCCCBC----HHHHTTSCTTCEEEE
T ss_pred ECCCcCCCCCCeecC----HHHHhhCCCCCEEEE
Confidence 644322111223323 345567899887654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.062 Score=47.20 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCCcEEEEc-Cc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--ccccc-c--ccCCC
Q 035593 77 PPGPIGILG-FG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALK-A--SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG-~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~-~--~~~~~ 149 (269)
+..+||++| +| .|..+..+++.. +++|++++.+++-.+.+++. +.. .++. .|..+ . ...+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~~~~~~~g 217 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKM-GAD----------IVLNHKESLLNQFKTQGIEL 217 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHH-TCS----------EEECTTSCHHHHHHHHTCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCc----------EEEECCccHHHHHHHhCCCC
Confidence 678999995 33 567777777754 67999999999999998873 321 1111 11111 1 23457
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+|+|+- ... ....++.+.+.|+++|.++.
T Consensus 218 ~Dvv~d-~~g---------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 218 VDYVFC-TFN---------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EEEEEE-SSC---------HHHHHHHHHHHEEEEEEEEE
T ss_pred ccEEEE-CCC---------chHHHHHHHHHhccCCEEEE
Confidence 999984 221 35678999999999999875
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.055 Score=48.00 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=59.9
Q ss_pred CC-CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-cccccc-ccCCCe
Q 035593 75 IL-PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKA-SLKDGF 150 (269)
Q Consensus 75 l~-~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~-~~~~~y 150 (269)
+. +..+||++|+|+ |..+..+++.. +++|++++.+++-.+.+++.++.. .++. .+.... ...+.+
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~----------~v~~~~~~~~~~~~~~~~ 252 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGAD----------SFLVSRDQEQMQAAAGTL 252 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCS----------EEEETTCHHHHHHTTTCE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCc----------eEEeccCHHHHHHhhCCC
Confidence 45 788999999763 66666777654 679999999998888887666531 1111 111111 222479
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+-..... ..++.+.+.|+++|.++.-
T Consensus 253 D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 253 DGIIDTVSAV----------HPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp EEEEECCSSC----------CCSHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCcH----------HHHHHHHHHHhcCCEEEEE
Confidence 9998433211 1235566789999988753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.058 Score=47.40 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=62.0
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccC
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLK 147 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~ 147 (269)
.+.+..+||++|+ |.|..+..+++.. +++|+++ .+++-.+.+++. +.. .+. ...|..+. ...
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l-Ga~--------~i~-~~~~~~~~~~~~~~~ 214 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL-GAT--------PID-ASREPEDYAAEHTAG 214 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH-TSE--------EEE-TTSCHHHHHHHHHTT
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc-CCC--------Eec-cCCCHHHHHHHHhcC
Confidence 4557899999994 4577777888754 7799999 899888888764 321 111 01111111 234
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+|+|+- ... .+.+..+.+.|+++|.++..
T Consensus 215 ~g~D~vid-~~g----------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 215 QGFDLVYD-TLG----------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp SCEEEEEE-SSC----------THHHHHHHHHEEEEEEEEES
T ss_pred CCceEEEE-CCC----------cHHHHHHHHHHhcCCeEEEE
Confidence 57999874 321 25788888999999998863
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.089 Score=45.72 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=63.4
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
.+.+..+||++|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. .++..+-.++
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-Ga~----------~~~~~~~~~~~~~~~~~ 204 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKAL-GAW----------ETIDYSHEDVAKRVLEL 204 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-TCS----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCC----------EEEeCCCccHHHHHHHH
Confidence 4567899999993 4577777777753 67999999999999998864 321 1121111111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.....+|+|+-... .+.++.+.+.|+++|.+++-.
T Consensus 205 ~~~~g~Dvvid~~g-----------~~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 205 TDGKKCPVVYDGVG-----------QDTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp TTTCCEEEEEESSC-----------GGGHHHHHTTEEEEEEEEECC
T ss_pred hCCCCceEEEECCC-----------hHHHHHHHHHhcCCCEEEEEe
Confidence 23457999984321 146778889999999988743
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.098 Score=45.91 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc---c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~---~ 145 (269)
.+.+.++||++|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. ..+-.. +..+. .
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~-g~~---------~~~d~~~~~~~~~~~~~~ 234 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI-GGE---------VFIDFTKEKDIVGAVLKA 234 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT-TCC---------EEEETTTCSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc-CCc---------eEEecCccHhHHHHHHHH
Confidence 3557889999998 4566666666653 67999999999888888763 311 111111 11111 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+.+|+|+.... ..+.++.+.+.|+++|.++.-
T Consensus 235 ~~~~~D~vi~~~g----------~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 235 TDGGAHGVINVSV----------SEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HTSCEEEEEECSS----------CHHHHHHHTTSEEEEEEEEEC
T ss_pred hCCCCCEEEECCC----------cHHHHHHHHHHHhcCCEEEEE
Confidence 1227999985332 246889999999999988753
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.14 Score=45.33 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=63.8
Q ss_pred CCCCCCcEEEEc--CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc---c
Q 035593 74 PILPPGPIGILG--FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG--~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~---~ 145 (269)
.+.+..+||++| +|.|..+..+++.. +++|++++.+++-.+.+++ ++.. .++.. |..+. .
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~-~Ga~----------~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS-LGCD----------RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TTCS----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH-cCCc----------EEEecCChhHHHHHHHh
Confidence 356788999999 45777888888764 6799999999998888886 3321 11111 11111 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
....+|+|+-.. . .+.++.+.+.|+++|.+++.
T Consensus 228 ~~~g~D~vid~~-g----------~~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 228 YPEGVDVVYESV-G----------GAMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp CTTCEEEEEECS-C----------THHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCEEEECC-C----------HHHHHHHHHHHhcCCEEEEE
Confidence 235799998432 1 15788899999999988763
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.1 Score=45.76 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=63.0
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc--cccc----c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN--ALKA----S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D--~~~~----~ 145 (269)
.+.+..+||++|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. .++..+ ..+. .
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-ga~----------~v~~~~~~~~~~v~~~~ 223 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV-GAD----------IVLPLEEGWAKAVREAT 223 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH-TCS----------EEEESSTTHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCc----------EEecCchhHHHHHHHHh
Confidence 4567899999997 4577777787764 67999999999988888874 321 122222 2111 2
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
....+|+|+-... . +.++.+.+.|+++|.+++-
T Consensus 224 ~~~g~Dvvid~~g-~----------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 224 GGAGVDMVVDPIG-G----------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp TTSCEEEEEESCC-------------CHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEECCc-h----------hHHHHHHHhhcCCCEEEEE
Confidence 3347999984322 1 2467788899999998763
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.059 Score=47.28 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---cccccc---c
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNALKA---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~~~~---~ 145 (269)
.+ +..+||++|+|+ |..+..+++.. ++ +|++++.+++-.+.+++. . . .++. .|..+. .
T Consensus 162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a-~----------~v~~~~~~~~~~~~~~~ 227 (343)
T 2dq4_A 162 GV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-A-D----------RLVNPLEEDLLEVVRRV 227 (343)
T ss_dssp CC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-C-S----------EEECTTTSCHHHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-H-H----------hccCcCccCHHHHHHHh
Confidence 45 889999999853 67777777764 66 899999999887777654 2 1 1111 111111 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
....+|+|+- ... ..+.++.+.+.|+++|.++..
T Consensus 228 ~~~g~D~vid-~~g---------~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 228 TGSGVEVLLE-FSG---------NEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp HSSCEEEEEE-CSC---------CHHHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCEEEE-CCC---------CHHHHHHHHHHHhcCCEEEEE
Confidence 1457999984 221 246788999999999988764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.049 Score=48.85 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=32.3
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
++.+|++||+| .|..+..+++.+ +++|+++|.+++..+.+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 57899999998 444444444433 6799999999998888876
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.037 Score=47.39 Aligned_cols=113 Identities=11% Similarity=-0.023 Sum_probs=70.4
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE----------EccccccccCCCeeEEEE
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY----------VGNALKASLKDGFSGILV 155 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~----------~~D~~~~~~~~~yD~I~~ 155 (269)
++.|-...++.+ .++-+|..||-.= .++ ..||+.+ ..|...-...++||+|++
T Consensus 150 ~~~~~~~~~~~k-~~g~~vl~v~~~~----------~~p------~k~v~wi~Pi~GAt~~~~lDfg~p~~~~k~DvV~S 212 (320)
T 2hwk_A 150 HPQSDFSSFVSK-LKGRTVLVVGEKL----------SVP------GKMVDWLSDRPEATFRARLDLGIPGDVPKYDIIFV 212 (320)
T ss_dssp CCCCCCHHHHHT-SSCSEEEEEESCC----------CCT------TSEEEEEESSTTCSEECCGGGCSCTTSCCEEEEEE
T ss_pred cCCCCHHHHHhh-CCCcEEEEEeccc----------ccC------CceeEeeccCCCceeecccccCCccccCcCCEEEE
Confidence 455666666655 6788888885321 121 1233333 344333333478999999
Q ss_pred cCCCCCCCCCCCC---c-----HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 156 DLFSKGSLLSELE---D-----PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 156 d~~~~~~~~~~l~---~-----~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
|...+... .+.. . .-..+.+.++|+|||.+++-+++.. +.....++..|++.|. .+..++
T Consensus 213 DMApn~sG-h~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga----------Dr~se~lv~~LaR~F~-~Vr~vK 280 (320)
T 2hwk_A 213 NVRTPYKY-HHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA----------DRASESIIGAIARQFK-FSRVCK 280 (320)
T ss_dssp ECCCCCCS-CHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC----------SHHHHHHHHHHHTTEE-EEEEEC
T ss_pred cCCCCCCC-ccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC----------cccHHHHHHHHHHhcc-eeeeeC
Confidence 97654221 1100 0 0156677899999999999998752 3456788999999995 677774
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.052 Score=48.00 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=60.5
Q ss_pred CC-CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCee
Q 035593 75 IL-PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFS 151 (269)
Q Consensus 75 l~-~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD 151 (269)
+. +..+||++|+| .|.++..+++.. +++|++++.+++-.+.+++.++.. .+ +-..|.... ...+.+|
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~--------~v-i~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGAD--------DY-VIGSDQAKMSELADSLD 246 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCS--------CE-EETTCHHHHHHSTTTEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCc--------ee-eccccHHHHHHhcCCCC
Confidence 45 78899999976 356666677654 679999999999888888666532 11 111111111 2234799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+- ..... +.++.+.+.|+++|.++.-
T Consensus 247 ~vid-~~g~~---------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 247 YVID-TVPVH---------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEE-CCCSC---------CCSHHHHTTEEEEEEEEEC
T ss_pred EEEE-CCCCh---------HHHHHHHHHhccCCEEEEe
Confidence 9984 32211 1345667889999998764
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.079 Score=47.93 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=33.6
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHh
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREF 120 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~ 120 (269)
++.+|++||+| .|..+..+++.+ +++|+++|+++...+.+++.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~ 232 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASL 232 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc
Confidence 47899999998 455555555544 77999999999998888773
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.13 Score=44.46 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=60.3
Q ss_pred cEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 80 PIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
+||++|+ |.|.++..+++.. +++|++++.+++-.+.+++. +.. ..+-..+.... .....+|+|+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~~~d~v~- 216 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL-GAN---------RILSRDEFAESRPLEKQLWAGAI- 216 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH-TCS---------EEEEGGGSSCCCSSCCCCEEEEE-
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCC---------EEEecCCHHHHHhhcCCCccEEE-
Confidence 5999996 4688888888864 67999999999999998874 321 11111111111 2335799886
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+.. .+.++.+.+.|+++|.++.-
T Consensus 217 d~~g----------~~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 217 DTVG----------DKVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp ESSC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred ECCC----------cHHHHHHHHHHhcCCEEEEE
Confidence 4321 34889999999999998764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.13 Score=45.82 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=55.4
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++++|+++|+| .|..+..+++. -+++|+++|.+++-.+.+++.++. .+.....+..++ ..-...|+|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~-~Ga~V~~~d~~~~~~~~~~~~~g~---------~~~~~~~~~~~l~~~~~~~DvVi 234 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALG-MGAQVTILDVNHKRLQYLDDVFGG---------RVITLTATEANIKKSVQHADLLI 234 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTTT---------SEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHhcCc---------eEEEecCCHHHHHHHHhCCCEEE
Confidence 36899999985 23333333333 367999999999988877765531 233322222222 1223689998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+..+....+++.. +.+.+.+++||+++ |+.
T Consensus 235 ~~~g~~~~~~~~li~----~~~l~~mk~gg~iV-~v~ 266 (369)
T 2eez_A 235 GAVLVPGAKAPKLVT----RDMLSLMKEGAVIV-DVA 266 (369)
T ss_dssp ECCC-------CCSC----HHHHTTSCTTCEEE-ECC
T ss_pred ECCCCCccccchhHH----HHHHHhhcCCCEEE-EEe
Confidence 754422111223333 44556778888754 543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.041 Score=48.18 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred CCcEEEEEcccccc---ccCCCeeEEEEcCCCCCCCCCCC----------CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 131 PDRLFVYVGNALKA---SLKDGFSGILVDLFSKGSLLSEL----------EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 131 ~~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~~~l----------~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+.+++++|+.+. ...+++|+|++|.+-........ ...+.++.+++.|+|||.+++++...
T Consensus 12 ~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 12 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred cCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 46789999999875 34678999999864322110000 23578889999999999999988654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.14 Score=44.60 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
..+|..||+| ++.++..+.+.....+|+++|.+++.++.+++. +.. .....|..+. .-...|+|++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~~----------~~~~~~~~~~-~~~~aDvVil 100 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GII----------DEGTTSIAKV-EDFSPDFVML 100 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSC----------SEEESCTTGG-GGGCCSEEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CCc----------chhcCCHHHH-hhccCCEEEE
Confidence 3689999998 566677776632223899999999988887653 211 0112232220 2346899998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..... ...+.++.+...|+++.++ +++.+
T Consensus 101 avp~~-------~~~~vl~~l~~~l~~~~iv-~d~~S 129 (314)
T 3ggo_A 101 SSPVR-------TFREIAKKLSYILSEDATV-TDQGS 129 (314)
T ss_dssp CSCGG-------GHHHHHHHHHHHSCTTCEE-EECCS
T ss_pred eCCHH-------HHHHHHHHHhhccCCCcEE-EECCC
Confidence 54322 1467889999999887654 55544
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.35 Score=42.45 Aligned_cols=120 Identities=13% Similarity=-0.009 Sum_probs=76.1
Q ss_pred CcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc----cCCCeeEE
Q 035593 79 GPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----LKDGFSGI 153 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----~~~~yD~I 153 (269)
-+++|+-||.|.+...+.+..-+ ..|.++|+|+...+.-+.+++ ...++.+|..++. ....+|+|
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~~DI~~~~~~~~~~~~~D~l 73 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP----------ETNLLNRNIQQLTPQVIKKWNVDTI 73 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECCCGGGCCHHHHHHTTCCEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC----------CCceeccccccCCHHHhccCCCCEE
Confidence 47999999999999998875322 368899999999999998874 2346778988872 22369999
Q ss_pred EEcCCCCCCC--------C--CCCCcHHHHHHHHhhcc-CCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 154 LVDLFSKGSL--------L--SELEDPNTWEKLRQCLR-KGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 154 ~~d~~~~~~~--------~--~~l~~~e~~~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
+...+-.... . ..-.-.++++ +.+.++ |.=+++=|+.+-.. ......+++.|.+.
T Consensus 74 ~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r-~i~~~~~P~~~vlENV~gl~~---------~~~~~~i~~~l~~~ 139 (333)
T 4h0n_A 74 LMSPPCQPFTRNGKYLDDNDPRTNSFLYLIG-ILDQLDNVDYILMENVKGFEN---------STVRNLFIDKLKEC 139 (333)
T ss_dssp EECCCCCCSEETTEECCTTCTTSCCHHHHHH-HGGGCTTCCEEEEEECTTGGG---------SHHHHHHHHHHHHT
T ss_pred EecCCCcchhhhhhccCCcCcccccHHHHHH-HHHHhcCCCEEEEecchhhhh---------hhHHHHHHHHHHhC
Confidence 9754332110 0 0011124444 344555 87777778865321 22355566666553
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.093 Score=45.98 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc-c---
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK-A--- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~-~--- 144 (269)
.+.+..+||++|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. .++.. |..+ .
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~-ga~----------~~~d~~~~~~~~~~~~~ 230 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL-GAD----------ETVNYTHPDWPKEVRRL 230 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCS----------EEEETTSTTHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-CCC----------EEEcCCcccHHHHHHHH
Confidence 3557889999998 5677777777754 67999999999999988763 321 11111 1111 1
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+|+-.+- . +.++.+.+.|+++|.++.-
T Consensus 231 ~~~~~~d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 231 TGGKGADKVVDHTG-A----------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTTTCEEEEEESSC-S----------SSHHHHHHHEEEEEEEEES
T ss_pred hCCCCceEEEECCC-H----------HHHHHHHHhhccCCEEEEE
Confidence 22357999985432 1 2467788899999988763
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.11 Score=45.79 Aligned_cols=93 Identities=23% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc-c---
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK-A--- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~-~--- 144 (269)
.+.+.++||+.|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. .++.. |..+ .
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-ga~----------~~~d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN-GAH----------EVFNHREVNYIDKIKKY 234 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCS----------EEEETTSTTHHHHHHHH
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc-CCC----------EEEeCCCchHHHHHHHH
Confidence 4567899999996 4566666666653 67999999999988887653 311 11111 1111 1
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+|+..+. .+.+..+.+.|+++|.+++-
T Consensus 235 ~~~~~~D~vi~~~G-----------~~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 235 VGEKGIDIIIEMLA-----------NVNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HCTTCEEEEEESCH-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCcEEEEECCC-----------hHHHHHHHHhccCCCEEEEE
Confidence 22347999985321 24577888999999998764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.2 Score=44.12 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=62.6
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~ 145 (269)
.+.+..+||++|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. .++..+-.++ .
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~----------~~~~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERL-GAK----------RGINYRSEDFAAVIKAE 231 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCS----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCC----------EEEeCCchHHHHHHHHH
Confidence 4567889999963 4577777777754 77999999999999988874 321 1121111111 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
....+|+|+-.+. .+.++.+.+.|+++|.++.-.
T Consensus 232 ~~~g~Dvvid~~g-----------~~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 232 TGQGVDIILDMIG-----------AAYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp HSSCEEEEEESCC-----------GGGHHHHHHTEEEEEEEEECC
T ss_pred hCCCceEEEECCC-----------HHHHHHHHHHhccCCEEEEEE
Confidence 2567999984321 135778889999999987643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.2 Score=43.45 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=60.9
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc--ccc-c---c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN--ALK-A---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D--~~~-~---~ 145 (269)
.+.+.++||+.|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. ..+-..| ..+ . .
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA-GAW---------QVINYREEDLVERLKEIT 205 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-TCS---------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCC---------EEEECCCccHHHHHHHHh
Confidence 4557889999994 4556666666543 67999999999988888763 311 1111111 111 1 2
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
....+|+|+..+- .+.++.+.+.|+++|.++..
T Consensus 206 ~~~~~D~vi~~~g-----------~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 206 GGKKVRVVYDSVG-----------RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TTCCEEEEEECSC-----------GGGHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEECCc-----------hHHHHHHHHHhcCCCEEEEE
Confidence 2347999985432 24678889999999988764
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.47 Score=41.55 Aligned_cols=121 Identities=12% Similarity=-0.011 Sum_probs=74.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCC-ceE-EEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc----cCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPE-AVI-HGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----LKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~-~~v-~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----~~~~yD 151 (269)
+-+++|+-||.|.+...+.+..-. ..+ .++|+|+...+..+.+++. . ++.+|..++. ....+|
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~---~~~~DI~~~~~~~i~~~~~D 78 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E---VQVKNLDSISIKQIESLNCN 78 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C---CBCCCTTTCCHHHHHHTCCC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C---cccCChhhcCHHHhccCCCC
Confidence 458999999999999998874211 345 6999999999999988741 1 5678888772 123799
Q ss_pred EEEEcCCCCCC------CCCCC-CcH-HHHHHHHh----hc--cCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 152 GILVDLFSKGS------LLSEL-EDP-NTWEKLRQ----CL--RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 152 ~I~~d~~~~~~------~~~~l-~~~-e~~~~~~~----~L--~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
+|+...+-... ....+ ... ..|..+.+ .+ +|.=+++=|+.+-.. ...+..+++.|.+
T Consensus 79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~---------~~~~~~i~~~l~~ 149 (327)
T 3qv2_A 79 TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE---------SLVFKEIYNILIK 149 (327)
T ss_dssp EEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG---------SHHHHHHHHHHHH
T ss_pred EEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC---------hHHHHHHHHHHHh
Confidence 99976442221 01111 111 33333333 55 676666668754321 2345566666655
Q ss_pred H
Q 035593 218 V 218 (269)
Q Consensus 218 ~ 218 (269)
.
T Consensus 150 ~ 150 (327)
T 3qv2_A 150 N 150 (327)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.059 Score=46.47 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=42.0
Q ss_pred CcEEEEEcccccc---ccCCCeeEEEEcCCCCCCC--C---CCC-----------CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 132 DRLFVYVGNALKA---SLKDGFSGILVDLFSKGSL--L---SEL-----------EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 132 ~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~--~---~~l-----------~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+++++++|+.++ ..+++||+|++|.+-.... . ..+ ...++++++++.|+|||.+++++..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 4689999999986 2457899999986432111 0 000 0134677899999999999998754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.12 Score=45.10 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=61.8
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c---c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~---~ 145 (269)
.+.+.++||+.|+ |.|..+..+++.. +++|++++.+++-.+.+++. +.. ..+-.. |..+ . .
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~-g~~---------~~~d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL-GCH---------HTINYSTQDFAEVVREIT 210 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCS---------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCC---------EEEECCCHHHHHHHHHHh
Confidence 4557889999995 5677777777654 67999999999888888763 311 111111 1111 1 2
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
....+|+|+..+-. +.++.+.+.|+++|.++.-
T Consensus 211 ~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 211 GGKGVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp TTCCEEEEEECSCT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence 23579999854321 3577888999999988764
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.28 Score=43.17 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c---c
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~---~ 145 (269)
.+.+.++||++|+ |.|..+..+++. .+++|++++.+++-.+.+++. +.. ..+-.. |..+ . .
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRM-AGAIPLVTAGSQKKLQMAEKL-GAA---------AGFNYKKEDFSEATLKFT 227 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHH-TCS---------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHc-CCc---------EEEecCChHHHHHHHHHh
Confidence 3557889999984 456666666665 367999999999998888553 321 111111 1111 1 2
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
....+|+|+-.+.. +.++.+.+.|+++|.+++-
T Consensus 228 ~~~~~d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 228 KGAGVNLILDCIGG-----------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TTSCEEEEEESSCG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred cCCCceEEEECCCc-----------hHHHHHHHhccCCCEEEEE
Confidence 23479999854321 2467778899999998764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.12 E-value=0.11 Score=44.47 Aligned_cols=90 Identities=14% Similarity=0.099 Sum_probs=61.0
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc-ccc-ccCCCe
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA-LKA-SLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~-~~~-~~~~~y 150 (269)
+.+..+||++|+ |.|..+..+++.. +++|++++.+++-.+.+++ ++.. .++..+- .++ ..-+.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~-~ga~----------~~~~~~~~~~~~~~~~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA-LGAE----------EAATYAEVPERAKAWGGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH-TTCS----------EEEEGGGHHHHHHHTTSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-cCCC----------EEEECCcchhHHHHhcCc
Confidence 667899999997 4567777777764 6799999999998888876 3321 1221111 122 111579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
|+|+- .. . +.++.+.+.|+++|.++.
T Consensus 191 d~vid-~g-~----------~~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 191 DLVLE-VR-G----------KEVEESLGLLAHGGRLVY 216 (302)
T ss_dssp EEEEE-CS-C----------TTHHHHHTTEEEEEEEEE
T ss_pred eEEEE-CC-H----------HHHHHHHHhhccCCEEEE
Confidence 99985 32 1 246788899999998875
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.18 Score=44.47 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=59.0
Q ss_pred CcEEEEcCc-ccHHH-HHHH-HHCCCce-EEEEECChH---HHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 79 GPIGILGFG-AGSAA-RLIL-DLYPEAV-IHGWELDPS---VIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 79 ~~VL~iG~G-~G~~~-~~l~-~~~p~~~-v~~vEidp~---~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
.+||++|+| .|.++ ..++ +. -+++ |++++.+++ -.+.+++ ++... +.....|..+. ...+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~-~Ga~~Vi~~~~~~~~~~~~~~~~~-lGa~~--------v~~~~~~~~~i~~~~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDD-KGYENLYCLGRRDRPDPTIDIIEE-LDATY--------VDSRQTPVEDVPDVYEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCT-TCCCEEEEEECCCSSCHHHHHHHH-TTCEE--------EETTTSCGGGHHHHSCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHH-cCCcEEEEEeCCcccHHHHHHHHH-cCCcc--------cCCCccCHHHHHHhCCCC
Confidence 899999975 36666 7777 64 3665 999999998 8888875 34211 10000111111 112379
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+|+ |... ....++.+.+.|+++|.++.-.
T Consensus 244 Dvvi-d~~g---------~~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 244 DFIY-EATG---------FPKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp EEEE-ECSC---------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CEEE-ECCC---------ChHHHHHHHHHHhcCCEEEEEe
Confidence 9998 3322 2457889999999999987643
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.11 Score=46.21 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---cccccc---ccC
Q 035593 76 LPPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNALKA---SLK 147 (269)
Q Consensus 76 ~~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~~~~---~~~ 147 (269)
.+..+||++|++ .|.++..+++.. +++|+++- +++-.+.+++. +.. .++. .|..+. ...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~l-Ga~----------~vi~~~~~~~~~~v~~~t~ 229 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSR-GAE----------EVFDYRAPNLAQTIRTYTK 229 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT-TCS----------EEEETTSTTHHHHHHHHTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHc-CCc----------EEEECCCchHHHHHHHHcc
Confidence 567899999983 688888888864 67888884 88888888764 321 1222 122111 223
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhc-cCCcEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL-RKGGRIMV 188 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L-~pgG~l~~ 188 (269)
+.+|+|+ |+.. ..+.++.+.+.| +++|.++.
T Consensus 230 g~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~iv~ 261 (371)
T 3gqv_A 230 NNLRYAL-DCIT---------NVESTTFCFAAIGRAGGHYVS 261 (371)
T ss_dssp TCCCEEE-ESSC---------SHHHHHHHHHHSCTTCEEEEE
T ss_pred CCccEEE-ECCC---------chHHHHHHHHHhhcCCCEEEE
Confidence 4599998 4322 246788888899 69998876
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.14 Score=45.82 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
++.+|+++|+| .|..+..+++.+ +++|+++|.++...+.+++ ++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~-~G 215 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES-LG 215 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH-TT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cC
Confidence 58899999997 444455555554 5689999999988887766 44
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.41 Score=42.01 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=62.1
Q ss_pred CCCCC--CcEEEEcC--cccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c-
Q 035593 74 PILPP--GPIGILGF--GAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A- 144 (269)
Q Consensus 74 ~l~~~--~~VL~iG~--G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~- 144 (269)
.+.+. ++||+.|+ |.|..+..+++.. ++ +|++++.+++-.+.+++.++.. ..+-.. |..+ .
T Consensus 155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~---------~~~d~~~~~~~~~~~ 224 (357)
T 2zb4_A 155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFD---------AAINYKKDNVAEQLR 224 (357)
T ss_dssp CCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCS---------EEEETTTSCHHHHHH
T ss_pred CCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCc---------eEEecCchHHHHHHH
Confidence 35567 89999997 4556666666653 67 9999999998888887755421 111111 1111 1
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+.+|+++..+- .+.++.+.+.|+++|.+++.
T Consensus 225 ~~~~~~~d~vi~~~G-----------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 225 ESCPAGVDVYFDNVG-----------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHCTTCEEEEEESCC-----------HHHHHHHHHTEEEEEEEEEC
T ss_pred HhcCCCCCEEEECCC-----------HHHHHHHHHHhccCcEEEEE
Confidence 12237999985321 26788899999999998763
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.25 Score=42.69 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=53.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCce---EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----cCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAV---IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS-----LKD 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~---v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~~ 148 (269)
.+.+++|+=||.|.+...+.+. +.+ |.++|+|+...+..+.++. ...++.+|..++. ...
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a--G~~~~~v~a~E~d~~a~~ty~~N~~----------~~~~~~~DI~~i~~~~i~~~~ 82 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL--GIQVDRYIASEVCEDSITVGMVRHQ----------GKIMYVGDVRSVTQKHIQEWG 82 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT--TBCEEEEEEECCCHHHHHHHHHHTT----------TCEEEECCGGGCCHHHHHHTC
T ss_pred CCCEEEEeCcCccHHHHHHHHC--CCccceEEEEECCHHHHHHHHHhCC----------CCceeCCChHHccHHHhcccC
Confidence 3668999999999999988873 443 5899999999988887763 2467889999872 124
Q ss_pred CeeEEEEcC
Q 035593 149 GFSGILVDL 157 (269)
Q Consensus 149 ~yD~I~~d~ 157 (269)
.+|+|+...
T Consensus 83 ~~Dll~ggp 91 (295)
T 2qrv_A 83 PFDLVIGGS 91 (295)
T ss_dssp CCSEEEECC
T ss_pred CcCEEEecC
Confidence 799999754
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.54 Score=40.74 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=58.0
Q ss_pred CCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE-----EccccccccCCC
Q 035593 77 PPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY-----VGNALKASLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~-----~~D~~~~~~~~~ 149 (269)
...+|++||+| ++.++..|++ .+.+|+.+ .+++.++..++. ++... .+...+. ..|. .....
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~--~G~~V~l~-~~~~~~~~i~~~-g~~~~----~~~~~~~~~~~~~~~~---~~~~~ 86 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLAR--AGHEVILI-ARPQHVQAIEAT-GLRLE----TQSFDEQVKVSASSDP---SAVQG 86 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHH--TTCEEEEE-CCHHHHHHHHHH-CEEEE----CSSCEEEECCEEESCG---GGGTT
T ss_pred cCCcEEEECcCHHHHHHHHHHHH--CCCeEEEE-EcHhHHHHHHhC-CeEEE----cCCCcEEEeeeeeCCH---HHcCC
Confidence 45689999998 4445555555 36689999 999888777654 21110 1111111 1121 12357
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+|++..... ...+.++.+...|+++.+++...
T Consensus 87 ~D~vilavk~~-------~~~~~l~~l~~~l~~~~~iv~~~ 120 (318)
T 3hwr_A 87 ADLVLFCVKST-------DTQSAALAMKPALAKSALVLSLQ 120 (318)
T ss_dssp CSEEEECCCGG-------GHHHHHHHHTTTSCTTCEEEEEC
T ss_pred CCEEEEEcccc-------cHHHHHHHHHHhcCCCCEEEEeC
Confidence 99999854322 25788999999998876655443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.16 Score=45.81 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=32.1
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
++.+|+++|+| .|..+..+++.+ +++|+++|.+++..+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~ 213 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS 213 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence 57899999997 444555555554 5799999999998887754
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.28 Score=43.21 Aligned_cols=93 Identities=16% Similarity=0.319 Sum_probs=59.3
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-ccc-----ccccc
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNA-----LKASL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~-----~~~~~ 146 (269)
.+.+..+||++|+| .|.++..+++..++++|++++.+++-.+.+++ ++.. .++. .+. .+...
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~-lGa~----------~vi~~~~~~~~~v~~~~~ 251 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-LGAD----------HVVDARRDPVKQVMELTR 251 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-TTCS----------EEEETTSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCC----------EEEeccchHHHHHHHHhC
Confidence 45678999999985 45566677776536799999999999999875 3421 1111 111 11122
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHH--HHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPN--TWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e--~~~~~~~~L~pgG~l~~~ 189 (269)
...+|+|+ |... ..+ .++.+.+. ++|.++.-
T Consensus 252 g~g~Dvvi-d~~G---------~~~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 252 GRGVNVAM-DFVG---------SQATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp TCCEEEEE-ESSC---------CHHHHHHGGGGEE--EEEEEEEC
T ss_pred CCCCcEEE-ECCC---------CchHHHHHHHhhc--CCCEEEEE
Confidence 34799998 4322 133 56666666 89988764
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.39 Score=39.37 Aligned_cols=94 Identities=17% Similarity=0.073 Sum_probs=61.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC--CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP--EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p--~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
...+|+.+|+ |.++..+++... +. |+++|.|++.++.++ . .+.++.+|+.+. ..-..
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~-----------~~~~i~gd~~~~~~l~~a~i~~ 71 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--S-----------GANFVHGDPTRVSDLEKANVRG 71 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--T-----------TCEEEESCTTCHHHHHHTTCTT
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--c-----------CCeEEEcCCCCHHHHHhcCcch
Confidence 3568999987 566666666543 45 999999998877655 1 268889998764 22457
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.|+|++...+. ..........+.+.|+..++..+.++
T Consensus 72 ad~vi~~~~~d-------~~n~~~~~~a~~~~~~~~iia~~~~~ 108 (234)
T 2aef_A 72 ARAVIVDLESD-------SETIHCILGIRKIDESVRIIAEAERY 108 (234)
T ss_dssp CSEEEECCSCH-------HHHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred hcEEEEcCCCc-------HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 89998743321 01234445566678876777766543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.2 Score=43.49 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=60.2
Q ss_pred CCCCC-cEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-ccc-cc-c--cc
Q 035593 75 ILPPG-PIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNA-LK-A--SL 146 (269)
Q Consensus 75 l~~~~-~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~-~~-~--~~ 146 (269)
+.+.. +||++|+ |.|..+..+++.. +++|++++.+++-.+.+++ ++.. .++. .|. .+ . ..
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~-lGa~----------~v~~~~~~~~~~~~~~~ 214 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ-LGAS----------EVISREDVYDGTLKALS 214 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH-HTCS----------EEEEHHHHCSSCCCSSC
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCc----------EEEECCCchHHHHHHhh
Confidence 44554 8999996 4667777777754 6789999999888888876 3421 1111 111 11 1 22
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+|+|+- ... . +.+..+.+.|+++|.+++-
T Consensus 215 ~~~~d~vid-~~g---------~-~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 215 KQQWQGAVD-PVG---------G-KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp CCCEEEEEE-SCC---------T-HHHHHHHTTEEEEEEEEEC
T ss_pred cCCccEEEE-CCc---------H-HHHHHHHHhhcCCCEEEEE
Confidence 347999873 321 1 4678889999999998764
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.7 Score=40.95 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=59.3
Q ss_pred CCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 77 PPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
...+|..||+| +..++..|++ .+.+|+++|.+++.++.+.+. + +. ...+..+. ...+..|+|
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~--~G~~V~v~dr~~~~~~~l~~~-g-----------~~-~~~s~~e~~~~a~~~DvV 85 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRK--GGHECVVYDLNVNAVQALERE-G-----------IA-GARSIEEFCAKLVKPRVV 85 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHTT-T-----------CB-CCSSHHHHHHHSCSSCEE
T ss_pred cCCEEEEECchHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHC-C-----------CE-EeCCHHHHHhcCCCCCEE
Confidence 45689999998 3445555555 367999999999887765543 1 11 01233333 233457999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++.+... ...+.++.+...|++|- ++++..+.
T Consensus 86 i~~vp~~-------~v~~vl~~l~~~l~~g~-iiId~st~ 117 (358)
T 4e21_A 86 WLMVPAA-------VVDSMLQRMTPLLAAND-IVIDGGNS 117 (358)
T ss_dssp EECSCGG-------GHHHHHHHHGGGCCTTC-EEEECSSC
T ss_pred EEeCCHH-------HHHHHHHHHHhhCCCCC-EEEeCCCC
Confidence 9855432 35788888988888855 45566544
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.019 Score=63.22 Aligned_cols=100 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-----CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-----EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-----~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~ 149 (269)
|..+||+||.|+|..+..+++... -.+.+..|+++...+.|++.|..-. ++.-.-|..+. .....
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d--------i~~~~~d~~~~~~~~~~~ 1311 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH--------VTQGQWDPANPAPGSLGK 1311 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT--------EEEECCCSSCCCC-----
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc--------cccccccccccccCCCCc
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
||+|+..-.-+.... ..+.++.+++.|+|||.+++
T Consensus 1312 ydlvia~~vl~~t~~----~~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A 1312 ADLLVCNCALATLGD----PAVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp CCEEEEECC------------------------CCEEEE
T ss_pred eeEEEEccccccccc----HHHHHHHHHHhcCCCcEEEE
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.36 Score=41.75 Aligned_cols=92 Identities=12% Similarity=0.087 Sum_probs=59.5
Q ss_pred CCCCCCcEEEEc-C-cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c-ccCCC
Q 035593 74 PILPPGPIGILG-F-GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A-SLKDG 149 (269)
Q Consensus 74 ~l~~~~~VL~iG-~-G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~-~~~~~ 149 (269)
.+.+..+||++| + |.|.++..+++.. +++|+++.. ++-.+.+++. +.. .++..+-.+ + ..-..
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~-~~~~~~~~~l-Ga~----------~~i~~~~~~~~~~~~~g 215 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTAS-KRNHAFLKAL-GAE----------QCINYHEEDFLLAISTP 215 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEEC-HHHHHHHHHH-TCS----------EEEETTTSCHHHHCCSC
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEec-cchHHHHHHc-CCC----------EEEeCCCcchhhhhccC
Confidence 456789999997 3 4678888888864 678998875 4447777763 321 122222222 2 22257
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+ |+.. .+.+..+.+.|+++|.++.-
T Consensus 216 ~D~v~-d~~g----------~~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 216 VDAVI-DLVG----------GDVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEE-ESSC----------HHHHHHHGGGEEEEEEEEEC
T ss_pred CCEEE-ECCC----------cHHHHHHHHhccCCCEEEEe
Confidence 99998 3322 23348899999999998863
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.25 Score=42.80 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCCC-cEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCC
Q 035593 75 ILPPG-PIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDG 149 (269)
Q Consensus 75 l~~~~-~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~ 149 (269)
+.+.. +||++|+ |.|..+..+++.. +++|++++.+++-.+.+++ ++... -+.....|.... .....
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~-lGa~~-------~i~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV-LGAKE-------VLAREDVMAERIRPLDKQR 216 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH-TTCSE-------EEECC---------CCSCC
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-cCCcE-------EEecCCcHHHHHHHhcCCc
Confidence 44554 8999996 5677777888764 6789999999888888876 44211 011000110111 22347
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+- .... +.++.+.+.|+++|.+++-
T Consensus 217 ~d~vid-~~g~----------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 217 WAAAVD-PVGG----------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEEEE-CSTT----------TTHHHHHHTEEEEEEEEEC
T ss_pred ccEEEE-CCcH----------HHHHHHHHhhccCCEEEEE
Confidence 999874 3221 2467788899999998764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.06 Score=45.50 Aligned_cols=58 Identities=12% Similarity=-0.056 Sum_probs=40.7
Q ss_pred cEEEEEcccccc---ccCCCeeEEEEcCCCCCCCC--CCC--------CcHHHHHHHHhhccCCcEEEEEe
Q 035593 133 RLFVYVGNALKA---SLKDGFSGILVDLFSKGSLL--SEL--------EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 133 rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~--~~l--------~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+++++|+.++ ...+++|+|++|.+-..... ..+ ...++++.+++.|+|+|.++++.
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 356889999876 34568999999965322100 011 23567888899999999999886
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.87 E-value=1.8 Score=39.92 Aligned_cols=124 Identities=8% Similarity=-0.038 Sum_probs=77.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----------- 145 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----------- 145 (269)
.-+++|+=||.|.+...+.+ .+. .|.++|+|+..++.-+.+|+. .+...++.+|..++.
T Consensus 88 ~~~viDLFaG~GGlslG~~~--aG~~~v~avE~d~~A~~ty~~N~~~-------~p~~~~~~~DI~~i~~~~~~~~~~~~ 158 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFES--IGGQCVFTSEWNKHAVRTYKANHYC-------DPATHHFNEDIRDITLSHQEGVSDEA 158 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHT--TTEEEEEEECCCHHHHHHHHHHSCC-------CTTTCEEESCTHHHHCTTCTTSCHHH
T ss_pred cceEEEecCCccHHHHHHHH--CCCEEEEEEeCCHHHHHHHHHhccc-------CCCcceeccchhhhhhccccccchhh
Confidence 35799999999999999876 344 589999999999998888752 234567789988762
Q ss_pred -------cCCCeeEEEEcCCCCCCC-CC-----------CC-------CcHHHHHHHHhhccCCcEEEEEecCCCccccc
Q 035593 146 -------LKDGFSGILVDLFSKGSL-LS-----------EL-------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAED 199 (269)
Q Consensus 146 -------~~~~yD~I~~d~~~~~~~-~~-----------~l-------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~ 199 (269)
....+|+|+...+-.... .. .+ .-.++++ +.+.++|.=+++=|+.+-...
T Consensus 159 ~~~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~r-iI~~~rPk~fvlENV~gl~s~--- 234 (482)
T 3me5_A 159 AAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVR-IIDARRPAMFVLENVKNLKSH--- 234 (482)
T ss_dssp HHHHHHHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHH-HHHHHCCSEEEEEEETTTTTG---
T ss_pred HHhhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHH-HHHHcCCcEEEEeCcHHHhcc---
Confidence 124689998664322111 00 00 0123333 334568877777788654210
Q ss_pred cccchhHHHHHHHHHHHH
Q 035593 200 SRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~ 217 (269)
+....+..+++.|.+
T Consensus 235 ---~~g~~f~~i~~~L~~ 249 (482)
T 3me5_A 235 ---DKGKTFRIIMQTLDE 249 (482)
T ss_dssp ---GGGHHHHHHHHHHHH
T ss_pred ---cCCcHHHHHHHHHhc
Confidence 112345666666654
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.2 Score=42.37 Aligned_cols=81 Identities=9% Similarity=0.137 Sum_probs=52.1
Q ss_pred CCCeeEEEEcCCCCCCCCCCCC-c-------HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 147 KDGFSGILVDLFSKGSLLSELE-D-------PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~-~-------~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
-++||+||+++-.+- ...|.. . .-.=..+.++|+|||.+++-.++.. +.....++..+.+.
T Consensus 209 ~grYDlVfvNv~Tpy-R~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyA----------DR~SE~vV~alARk 277 (324)
T 3trk_A 209 LGRYDLVVINIHTPF-RIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYA----------DRTSERVICVLGRK 277 (324)
T ss_dssp GCCEEEEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCC----------SHHHHHHHHHHHTT
T ss_pred CCceeEEEEecCCcc-ccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeeccc----------ccchHHHHHHHHhh
Confidence 379999999976542 111110 1 1233456789999999999888752 45677899999999
Q ss_pred hcCceEEEEc--CCCCceEEEEe
Q 035593 219 FGKKLYVLSL--GNRKDDSLIAL 239 (269)
Q Consensus 219 F~~~v~~~~~--~~~~n~v~~~~ 239 (269)
|. .+.+... -.+..++++.+
T Consensus 278 F~-~~rv~~P~cv~snTEv~~vF 299 (324)
T 3trk_A 278 FR-SSRALKPPCVTSNTEMFFLF 299 (324)
T ss_dssp EE-EEEEECCTTCCBTTCEEEEE
T ss_pred he-eeeeecCccccccceEEEEE
Confidence 95 5666542 22333455544
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.65 Score=39.50 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=54.9
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc-ccCCCeeE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA-SLKDGFSG 152 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~-~~~~~yD~ 152 (269)
.+|+.||+| ++.++..|.+ .+.+|++++.+++.++..++. +..... .+......- +..+. ..-..+|+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQ--GGNDVTLIDQWPAHIEAIRKN-GLIADF---NGEEVVANLPIFSPEEIDHQNEQVDL 77 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHH-CEEEEE---TTEEEEECCCEECGGGCCTTSCCCSE
T ss_pred CeEEEECcCHHHHHHHHHHHh--CCCcEEEEECCHHHHHHHHhC-CEEEEe---CCCeeEecceeecchhhcccCCCCCE
Confidence 379999998 3344455554 356999999999887776654 221100 000000000 11111 11137899
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
|++..... ...+.++.+...|+++.+++.
T Consensus 78 vi~~v~~~-------~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 78 IIALTKAQ-------QLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp EEECSCHH-------HHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEEeccc-------cHHHHHHHHHHhcCCCCEEEE
Confidence 99854322 146788888888888665544
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.034 Score=48.74 Aligned_cols=60 Identities=8% Similarity=-0.047 Sum_probs=47.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
+...|||--||+|+.+.++.+ -+.+..++|++|..+++|++++.... .....+..|+++.
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~--~gr~~ig~e~~~~~~~~~~~r~~~~~------~~~~~~~~~~~~i 311 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAER--ESRKWISFEMKPEYVAASAFRFLDNN------ISEEKITDIYNRI 311 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHH--TTCEEEEEESCHHHHHHHHGGGSCSC------SCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhcc------cchHHHHHHHHHH
Confidence 567899999999999999887 37899999999999999999985321 2345555666554
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.077 Score=46.43 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=43.4
Q ss_pred CCcEEEE-Ecccccc---ccCCCeeEEEEcCCCCCCC-----CCCC--CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 131 PDRLFVY-VGNALKA---SLKDGFSGILVDLFSKGSL-----LSEL--EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 131 ~~rv~~~-~~D~~~~---~~~~~yD~I~~d~~~~~~~-----~~~l--~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...+++ ++|+.++ ...+++|+|++|.+-.... .... ...+.+..+++.|+|+|.+++++..
T Consensus 36 ~~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~ 108 (319)
T 1eg2_A 36 GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 108 (319)
T ss_dssp CCEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence 3457888 9999886 3456899999996432210 0000 2357788889999999999998754
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.16 Score=46.69 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=47.5
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
.+|+.+||| ..+..+++.. .+..|+++|.|++.++.+.+.++ +.+++||+.+. ..-+..|
T Consensus 4 M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~-----------~~~i~Gd~~~~~~L~~Agi~~ad 70 (461)
T 4g65_A 4 MKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKYD-----------LRVVNGHASHPDVLHEAGAQDAD 70 (461)
T ss_dssp EEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSS-----------CEEEESCTTCHHHHHHHTTTTCS
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC-----------cEEEEEcCCCHHHHHhcCCCcCC
Confidence 468887775 5555666554 36689999999999988777653 67889999875 2346788
Q ss_pred EEEE
Q 035593 152 GILV 155 (269)
Q Consensus 152 ~I~~ 155 (269)
+++.
T Consensus 71 ~~ia 74 (461)
T 4g65_A 71 MLVA 74 (461)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.69 E-value=0.89 Score=40.13 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=58.6
Q ss_pred CCCCCcEEEEc--CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 75 ILPPGPIGILG--FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG--~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
+.+..+||++| +|.|..+..+++.. +++|++++ +++-.+.+++ ++.. .++..+-.++ ....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~-lGa~----------~v~~~~~~~~~~~~~~~~ 247 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRK-LGAD----------DVIDYKSGSVEEQLKSLK 247 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHH-TTCS----------EEEETTSSCHHHHHHTSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHH-cCCC----------EEEECCchHHHHHHhhcC
Confidence 56788999999 34677777888764 67999998 6777777754 3321 1111111111 2235
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+|+|+-. ... ....++.+.+.|+++|.++.-
T Consensus 248 g~D~vid~-~g~--------~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 248 PFDFILDN-VGG--------STETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp CBSEEEES-SCT--------THHHHGGGGBCSSSCCEEEES
T ss_pred CCCEEEEC-CCC--------hhhhhHHHHHhhcCCcEEEEe
Confidence 79999843 221 113457777889999998763
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.38 Score=40.52 Aligned_cols=88 Identities=23% Similarity=0.104 Sum_probs=55.3
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||+| ++.++..+.+ .+.+|+++|.+++.++.+++. +.. . + ...|..+ . ...|+|++..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~~-g~~-------~--~-~~~~~~~--~-~~~D~vi~av 65 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVER-QLV-------D--E-AGQDLSL--L-QTAKIIFLCT 65 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHT-TSC-------S--E-EESCGGG--G-TTCSEEEECS
T ss_pred EEEEEcCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHhC-CCC-------c--c-ccCCHHH--h-CCCCEEEEEC
Confidence 68999987 3344555554 356899999999888776542 221 1 1 1223222 2 5789999854
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
... ...+.++.+...++++.+ ++++.
T Consensus 66 ~~~-------~~~~~~~~l~~~~~~~~~-vv~~~ 91 (279)
T 2f1k_A 66 PIQ-------LILPTLEKLIPHLSPTAI-VTDVA 91 (279)
T ss_dssp CHH-------HHHHHHHHHGGGSCTTCE-EEECC
T ss_pred CHH-------HHHHHHHHHHhhCCCCCE-EEECC
Confidence 321 246788888888887664 46663
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.38 Score=42.41 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=57.3
Q ss_pred CCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECCh---HHHHHHHHhcCccccccCCCCcEEEEEcc-cccc--ccCCCe
Q 035593 78 PGPIGILGFGA-GSAARLILDLYPEAVIHGWELDP---SVIKVAREFFALEKLEKSYPDRLFVYVGN-ALKA--SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp---~~~~~a~~~~~~~~~~~~~~~rv~~~~~D-~~~~--~~~~~y 150 (269)
.++||++|+|+ |..+..+++.. +++|++++.++ +-.+.+++. +.. .+ ..+ ..+. .....+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~-ga~--------~v---~~~~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEET-KTN--------YY---NSSNGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHH-TCE--------EE---ECTTCSHHHHHHHCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHh-CCc--------ee---chHHHHHHHHHhCCCC
Confidence 78999999842 55555666543 66999999998 777887753 321 12 112 1111 112579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHH-HHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTW-EKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~-~~~~~~L~pgG~l~~~ 189 (269)
|+|+-.... ...+ +.+.+.|+++|.++.-
T Consensus 248 d~vid~~g~----------~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 248 DVIIDATGA----------DVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEEECCCC----------CTHHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECCCC----------hHHHHHHHHHHHhcCCEEEEE
Confidence 999853321 1356 8889999999988764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.48 Score=43.22 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE----ccc------
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV----GNA------ 141 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~----~D~------ 141 (269)
.+.+..+||++|+ |.|.++..+++.. ++++++++.+++-.+.+++. +........+..+.+.. .|.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~l-Ga~~vi~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAM-GAEAIIDRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCCEEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhh-CCcEEEecCcCcccccccccccchHHHHHH
Confidence 4567889999997 4577777888764 77999999999999998764 32110000000000000 000
Q ss_pred -ccc---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 142 -LKA---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 142 -~~~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
... .....+|+|+- .. ..+.++.+.+.|+++|.+++-
T Consensus 303 ~~~i~~~t~g~g~Dvvid-~~----------G~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFE-HP----------GRETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHTSCCEEEEEE-CS----------CHHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHhCCCCCcEEEE-cC----------CchhHHHHHHHhhCCcEEEEE
Confidence 111 23468999973 22 136788899999999998863
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=1.3 Score=36.78 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=48.3
Q ss_pred CCCcEEEEcCccc-HH----HHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc------
Q 035593 77 PPGPIGILGFGAG-SA----ARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS------ 145 (269)
Q Consensus 77 ~~~~VL~iG~G~G-~~----~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~------ 145 (269)
..++||+.|++++ .+ ++.|++ .+.+|.+++.++...+.+++...... ..++.++..|..+..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHE--AGARLIFTYAGERLEKSVHELAGTLD-----RNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHTSS-----SCCCEEEECCCSSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH--CCCEEEEecCchHHHHHHHHHHHhcC-----CCCceEEeCCCCCHHHHHHHH
Confidence 4678999997633 23 344444 47899999998765555544332111 247899999998751
Q ss_pred -----cCCCeeEEEEcCC
Q 035593 146 -----LKDGFSGILVDLF 158 (269)
Q Consensus 146 -----~~~~yD~I~~d~~ 158 (269)
..++.|+++..+.
T Consensus 79 ~~~~~~~g~id~li~~Ag 96 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIA 96 (266)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCeeEEEEccc
Confidence 1247899998753
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.49 Score=39.92 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=55.8
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCC-CeeEEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKD-GFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~-~yD~I~~ 155 (269)
.+|..||+| ++.++..+.+.....+|+++|.+++.++.+++. +.. . . ...|..+. -. ..|+|++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~-------~--~-~~~~~~~~--~~~~aDvVil 68 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GII-------D--E-GTTSIAKV--EDFSPDFVML 68 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSC-------S--E-EESCGGGG--GGTCCSEEEE
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC-CCc-------c--c-ccCCHHHH--hcCCCCEEEE
Confidence 379999988 344555555421123899999999988877643 211 1 1 11232221 23 6899998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..... ...+.++.+...|+++.+ ++++.+
T Consensus 69 avp~~-------~~~~v~~~l~~~l~~~~i-v~~~~~ 97 (281)
T 2g5c_A 69 SSPVR-------TFREIAKKLSYILSEDAT-VTDQGS 97 (281)
T ss_dssp CSCHH-------HHHHHHHHHHHHSCTTCE-EEECCS
T ss_pred cCCHH-------HHHHHHHHHHhhCCCCcE-EEECCC
Confidence 54322 145788888888988764 455543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=92.39 E-value=3.7 Score=33.15 Aligned_cols=70 Identities=13% Similarity=0.023 Sum_probs=47.4
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------ccCC
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------SLKD 148 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------~~~~ 148 (269)
++||+.|+++| +++.+++++ .+.+|.+++.+++-++...+.++ .++.++..|..+. ...+
T Consensus 2 k~vlVTGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~ 71 (230)
T 3guy_A 2 SLIVITGASSG-LGAELAKLYDAEGKATYLTGRSESKLSTVTNCLS---------NNVGYRARDLASHQEVEQLFEQLDS 71 (230)
T ss_dssp -CEEEESTTSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCS---------SCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred CEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh---------hccCeEeecCCCHHHHHHHHHHHhh
Confidence 46888887654 444444332 47899999999988877666542 3578888888764 2345
Q ss_pred CeeEEEEcCC
Q 035593 149 GFSGILVDLF 158 (269)
Q Consensus 149 ~yD~I~~d~~ 158 (269)
.+|+++..+.
T Consensus 72 ~~d~lv~~Ag 81 (230)
T 3guy_A 72 IPSTVVHSAG 81 (230)
T ss_dssp CCSEEEECCC
T ss_pred cCCEEEEeCC
Confidence 5699987654
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.33 Score=42.50 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=55.1
Q ss_pred CCCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------
Q 035593 73 PPILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------ 144 (269)
Q Consensus 73 ~~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------ 144 (269)
..+.+..+||++|+ |.|.++..+++...+.+|+++. +++-.+.++ ++.. .++. +..++
T Consensus 138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~----------~~~~-~~~~~~~~~~~ 203 (349)
T 4a27_A 138 ANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVT----------HLFD-RNADYVQEVKR 203 (349)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSS----------EEEE-TTSCHHHHHHH
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCc----------EEEc-CCccHHHHHHH
Confidence 34567899999998 3567777777755567899888 555555554 4321 1222 11122
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+.+|+|+- +... +.++.+.+.|+++|.+++--
T Consensus 204 ~~~~g~Dvv~d-~~g~----------~~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 204 ISAEGVDIVLD-CLCG----------DNTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp HCTTCEEEEEE-ECC-----------------CTTEEEEEEEEEEC
T ss_pred hcCCCceEEEE-CCCc----------hhHHHHHHHhhcCCEEEEEC
Confidence 23468999984 3221 12366778999999998643
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.93 Score=39.75 Aligned_cols=112 Identities=9% Similarity=0.068 Sum_probs=67.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc-----cc-----------cCCCCcEEEEEcc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK-----LE-----------KSYPDRLFVYVGN 140 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~-----~~-----------~~~~~rv~~~~~D 140 (269)
+...|+.||||..+.+..+....++.++.=||. |++++.-++.+.-.+ ++ ....++.+++-.|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 567899999999999999887656555555555 999888766643110 00 0013689999999
Q ss_pred cccc-c---------cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE-EEecC
Q 035593 141 ALKA-S---------LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM-VNVGG 192 (269)
Q Consensus 141 ~~~~-~---------~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~-~~~~~ 192 (269)
.++. . ......++++...-. +.+.-....+++.+.+.+ |+|.++ +....
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~--YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~ 235 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLC--YMHNNESQLLINTIMSKF-SHGLWISYDPIG 235 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGG--GSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhh--CCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence 9873 1 123455665532111 111111246777777776 667654 54443
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.39 Score=41.63 Aligned_cols=119 Identities=16% Similarity=0.067 Sum_probs=76.2
Q ss_pred cEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEc
Q 035593 80 PIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d 156 (269)
+|+|+=||.|.+..-+.+. +. .+.++|+|+..++.-+.+++ -+++.+|..++ ..-...|+|+..
T Consensus 2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCC-----------SEEEESCGGGCCGGGSCCCSEEECC
T ss_pred eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC-----------CCcccCChhhCCHhhCCcccEEEec
Confidence 6899999999999988773 44 56799999999999888864 25678999988 334578999854
Q ss_pred CCCCC----CCCCCCCc------HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 157 LFSKG----SLLSELED------PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 157 ~~~~~----~~~~~l~~------~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
.+-.. +....+.. .++++ +.+.++|.-+++=|+.+-.. . .....+..+++.|.+.
T Consensus 69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r-~i~~~~Pk~~~~ENV~gl~~-----~-~~~~~~~~i~~~l~~~ 133 (331)
T 3ubt_Y 69 PPSQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPIFFLAENVKGMMA-----Q-RHNKAVQEFIQEFDNA 133 (331)
T ss_dssp CCGGGTEETTEECCTTCGGGHHHHHHHH-HHHHHCCSEEEEEECCGGGG-----C-TTSHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCccCCCCchhHHHHHHHH-HHhccCCeEEEeeeeccccc-----c-cccchhhhhhhhhccC
Confidence 32111 10001111 23333 44567898777768754321 0 1133566777777664
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.67 Score=40.38 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=55.9
Q ss_pred CcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCC--CcEEEEEccccccccCCCeeEEE
Q 035593 79 GPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYP--DRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 79 ~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~--~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
.+|+.||+|. +.++..|.+ .+.+|++++.+++.++..++..+..-.+.... .++.....|..+ .-..+|+|+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~vi 80 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL--AVKDADVIL 80 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH--HHTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHH--HHhcCCEEE
Confidence 5899999984 234444444 36789999999988877666532210000000 000011122211 124789999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
+...... ..+.++.+...|+++.+++
T Consensus 81 ~~v~~~~-------~~~~~~~l~~~l~~~~~vv 106 (359)
T 1bg6_A 81 IVVPAIH-------HASIAANIASYISEGQLII 106 (359)
T ss_dssp ECSCGGG-------HHHHHHHHGGGCCTTCEEE
T ss_pred EeCCchH-------HHHHHHHHHHhCCCCCEEE
Confidence 8654321 3688888988898866443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.37 Score=41.62 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=53.6
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-cccCCCeeEEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-ASLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~~~~~~yD~I~~ 155 (269)
.+|+.||+| ++.++..|.+ .+.+|+.++.++ . +..++. ++.-.. .....++..-.+.. ......+|+|++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~-~-~~i~~~-g~~~~~--~~g~~~~~~~~~~~~~~~~~~~D~vil 75 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQR--SGEDVHFLLRRD-Y-EAIAGN-GLKVFS--INGDFTLPHVKGYRAPEEIGPMDLVLV 75 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHH--TSCCEEEECSTT-H-HHHHHT-CEEEEE--TTCCEEESCCCEESCHHHHCCCSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCc-H-HHHHhC-CCEEEc--CCCeEEEeeceeecCHHHcCCCCEEEE
Confidence 479999998 3445555555 356899999987 3 444432 221000 01222221000000 112357999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
..... ...+.++.++..|+++..++.
T Consensus 76 avk~~-------~~~~~l~~l~~~l~~~~~iv~ 101 (312)
T 3hn2_A 76 GLKTF-------ANSRYEELIRPLVEEGTQILT 101 (312)
T ss_dssp CCCGG-------GGGGHHHHHGGGCCTTCEEEE
T ss_pred ecCCC-------CcHHHHHHHHhhcCCCCEEEE
Confidence 54322 246889999999998876554
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=91.81 E-value=0.53 Score=39.88 Aligned_cols=93 Identities=19% Similarity=0.108 Sum_probs=57.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|..||+| ++.++..+.+..++.+|+++|.+++.++.+++. +.. . ....|..+. -...|+|++.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~-------~---~~~~~~~~~--~~~aDvVila 73 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GIV-------D---EATADFKVF--AALADVIILA 73 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TSC-------S---EEESCTTTT--GGGCSEEEEC
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CCc-------c---cccCCHHHh--hcCCCEEEEc
Confidence 579999998 455566666643467899999999888776552 211 0 111222221 2468999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhh-ccCCcEEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQC-LRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~-L~pgG~l~~~~~~ 192 (269)
.... . ..+.++.+... |+++.+ ++++.+
T Consensus 74 vp~~------~-~~~v~~~l~~~~l~~~~i-vi~~~~ 102 (290)
T 3b1f_A 74 VPIK------K-TIDFIKILADLDLKEDVI-ITDAGS 102 (290)
T ss_dssp SCHH------H-HHHHHHHHHTSCCCTTCE-EECCCS
T ss_pred CCHH------H-HHHHHHHHHhcCCCCCCE-EEECCC
Confidence 4322 1 26788888877 887654 445533
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.41 Score=44.25 Aligned_cols=105 Identities=9% Similarity=0.042 Sum_probs=65.5
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--c---ccccCC-------CCcEEEEEccccc
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--E---KLEKSY-------PDRLFVYVGNALK 143 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~---~~~~~~-------~~rv~~~~~D~~~ 143 (269)
.++|..||+| ++.++..+++ .+.+|+++|++++.++.+++.... . ..+... ..+++.. .|..
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~--aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 80 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAAS--HGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDIH- 80 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCGG-
T ss_pred CCEEEEECcCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCHH-
Confidence 3589999998 3455666665 477999999999999888764210 0 000000 0134432 2322
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.-...|+||...+... -...++|+++.+.++|+.+++.|..+.
T Consensus 81 --~~~~aDlVIeAVpe~~-----~vk~~v~~~l~~~~~~~~IlasntSti 123 (483)
T 3mog_A 81 --ALAAADLVIEAASERL-----EVKKALFAQLAEVCPPQTLLTTNTSSI 123 (483)
T ss_dssp --GGGGCSEEEECCCCCH-----HHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred --HhcCCCEEEEcCCCcH-----HHHHHHHHHHHHhhccCcEEEecCCCC
Confidence 2346799997554321 012578999999999998888887554
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=91.75 E-value=0.19 Score=42.80 Aligned_cols=104 Identities=9% Similarity=0.040 Sum_probs=61.0
Q ss_pred CcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC------------cccccc-CCCCcEEEEEccccc
Q 035593 79 GPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFA------------LEKLEK-SYPDRLFVYVGNALK 143 (269)
Q Consensus 79 ~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~------------~~~~~~-~~~~rv~~~~~D~~~ 143 (269)
++|..||+|. ..++..+++ .+.+|+++|++++.++.+++... +..... ....+++. ..|..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~ 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence 5899999883 344444444 47799999999999888776521 100000 00012222 122211
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.-...|+|+....... -...++++.+...++|+.+++-|..+
T Consensus 82 --~~~~aDlVi~av~~~~-----~~~~~v~~~l~~~~~~~~il~s~tS~ 123 (283)
T 4e12_A 82 --AVKDADLVIEAVPESL-----DLKRDIYTKLGELAPAKTIFATNSST 123 (283)
T ss_dssp --HTTTCSEEEECCCSCH-----HHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred --HhccCCEEEEeccCcH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2356899997543220 01357888999999998877666543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.67 E-value=0.37 Score=43.77 Aligned_cols=96 Identities=11% Similarity=-0.016 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc----------
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA---------- 141 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~---------- 141 (269)
.+.+.++||++|+ |.|..+..+++. .++++++++.+++-.+.+++. +.. .-+.....|.
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~-~Ga~vi~~~~~~~~~~~~~~l-Ga~-------~~i~~~~~~~~~~~~~~~~~ 287 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKN-GGGIPVAVVSSAQKEAAVRAL-GCD-------LVINRAELGITDDIADDPRR 287 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHT-TCC-------CEEEHHHHTCCTTGGGCHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhc-CCC-------EEEecccccccccccccccc
Confidence 4567899999996 356777777775 478999999999999998763 321 1111101111
Q ss_pred ---------ccc--ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 142 ---------LKA--SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 142 ---------~~~--~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
... .....+|+|+-.. . .+.++.+.+.|+++|.++.-
T Consensus 288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~-G----------~~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 288 VVETGRKLAKLVVEKAGREPDIVFEHT-G----------RVTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEECS-C----------HHHHHHHHHHSCTTCEEEES
T ss_pred cchhhhHHHHHHHHHhCCCceEEEECC-C----------chHHHHHHHHHhcCCEEEEE
Confidence 111 1245799998422 1 24678888999999998763
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.91 Score=39.22 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=55.6
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHh-cCccccccCCCCcEEEE----EccccccccCCCee
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREF-FALEKLEKSYPDRLFVY----VGNALKASLKDGFS 151 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~-~~~~~~~~~~~~rv~~~----~~D~~~~~~~~~yD 151 (269)
.+|++||+| ++.++..|.+ .+.+|+.++.++ . +..++. +.... ...+.+++. ..|.. ...+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~-~-~~i~~~Gl~~~~---~~~g~~~~~~~~~~~~~~--~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAK--TGHCVSVVSRSD-Y-ETVKAKGIRIRS---ATLGDYTFRPAAVVRSAA--ELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHH--TTCEEEEECSTT-H-HHHHHHCEEEEE---TTTCCEEECCSCEESCGG--GCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCh-H-HHHHhCCcEEee---cCCCcEEEeeeeeECCHH--HcCCCCC
Confidence 479999998 4455555555 367999999987 3 444432 11110 001223321 11211 1224799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|++...... ..+.++.++..|+++..++.-.
T Consensus 74 lVilavK~~~-------~~~~l~~l~~~l~~~t~Iv~~~ 105 (320)
T 3i83_A 74 CTLLCIKVVE-------GADRVGLLRDAVAPDTGIVLIS 105 (320)
T ss_dssp EEEECCCCCT-------TCCHHHHHTTSCCTTCEEEEEC
T ss_pred EEEEecCCCC-------hHHHHHHHHhhcCCCCEEEEeC
Confidence 9998654332 3468899999999887665433
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.62 E-value=2.1 Score=36.09 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=51.3
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
.|++.|+.+ +.+.+|+.|+++| +++.+++.+ .+.+|.+++.+++-++...+.+... ..++.++..|.
T Consensus 18 ~~~~~m~~~----~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv 86 (283)
T 3v8b_A 18 LYFQSMMNQ----PSPVALITGAGSG-IGRATALALAADGVTVGALGRTRTEVEEVADEIVGA------GGQAIALEADV 86 (283)
T ss_dssp -------------CCCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT------TCCEEEEECCT
T ss_pred hhhhhhcCC----CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccC
Confidence 355555433 4567888887654 444444332 4789999999998877666655321 35789999998
Q ss_pred ccc-----------ccCCCeeEEEEcCC
Q 035593 142 LKA-----------SLKDGFSGILVDLF 158 (269)
Q Consensus 142 ~~~-----------~~~~~yD~I~~d~~ 158 (269)
.+. ..-++.|+++.++-
T Consensus 87 ~d~~~v~~~~~~~~~~~g~iD~lVnnAg 114 (283)
T 3v8b_A 87 SDELQMRNAVRDLVLKFGHLDIVVANAG 114 (283)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 864 12357999998764
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.27 Score=38.28 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c----cCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S----LKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~----~~~~y 150 (269)
.+.-|||+|.|.|..=.+|.+.+|+.+|.++|-.-.. .+. ...+.-.++.||+++. . -..+.
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~---------hp~---~~P~~e~~ilGdi~~tL~~~~~r~g~~a 107 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS---------HPD---STPPEAQLILGDIRETLPATLERFGATA 107 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC---------CGG---GCCCGGGEEESCHHHHHHHHHHHHCSCE
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc---------CCC---CCCchHheecccHHHHHHHHHHhcCCce
Confidence 3778999999999999999999999999999973110 111 1234567888999876 1 24556
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHH-HHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTW-EKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~-~~~~~~L~pgG~l~~~ 189 (269)
-++-.|.-.+.. .....+..++ ..+...|.|||+++-.
T Consensus 108 ~LaHaD~G~g~~-~~d~a~a~~lsplI~~~la~GGi~vS~ 146 (174)
T 3iht_A 108 SLVHADLGGHNR-EKNDRFARLISPLIEPHLAQGGLMVSS 146 (174)
T ss_dssp EEEEECCCCSCH-HHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred EEEEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 666666544321 0011111222 2456788999988753
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.11 E-value=3 Score=34.89 Aligned_cols=121 Identities=16% Similarity=0.047 Sum_probs=64.4
Q ss_pred ccchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECCh-HHHHHHHHhcCccccccCCCCcEEEE
Q 035593 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDP-SVIKVAREFFALEKLEKSYPDRLFVY 137 (269)
Q Consensus 61 l~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp-~~~~~a~~~~~~~~~~~~~~~rv~~~ 137 (269)
....|.+.|+.... ...+.+|+.|+++| +++.+++++ .+.+|..++.+. +-.+...+.+.. ...++.++
T Consensus 15 ~~~~~~~~mm~~~~-l~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~------~~~~~~~~ 86 (271)
T 3v2g_A 15 TENLYFQSMMTSIS-LAGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQ------AGGRAVAI 86 (271)
T ss_dssp -----CHHHHTTTC-CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEE
T ss_pred ccccchhhhccccC-CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh------cCCcEEEE
Confidence 34446666654322 25678899987654 444443332 478898886653 434433333221 13578999
Q ss_pred Ecccccc-----------ccCCCeeEEEEcCCCCCCCCC-CCCc--------------HHHHHHHHhhccCCcEEEEE
Q 035593 138 VGNALKA-----------SLKDGFSGILVDLFSKGSLLS-ELED--------------PNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 138 ~~D~~~~-----------~~~~~yD~I~~d~~~~~~~~~-~l~~--------------~e~~~~~~~~L~pgG~l~~~ 189 (269)
..|..+. ..-++.|+++.++-.....+. .... ....+.+...|+++|.++..
T Consensus 87 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 87 RADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9998864 122478999987532211111 1111 12345556777788876554
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.31 Score=40.46 Aligned_cols=91 Identities=12% Similarity=0.178 Sum_probs=53.7
Q ss_pred CcEEEEcCc--ccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
.+|..||+| ++.++..+.+.. +..+|+++|.+++-++..++.++. ++ ..|..+. -...|+|+
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~-----------~~-~~~~~e~--~~~aDvVi 68 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGL-----------TT-TTDNNEV--AKNADILI 68 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCC-----------EE-CSCHHHH--HHHCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCC-----------EE-eCChHHH--HHhCCEEE
Confidence 479999998 445556666531 123899999999988777655432 11 1222221 23579999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+..... ...+.++.+...|+++.+++...
T Consensus 69 lav~~~-------~~~~v~~~l~~~l~~~~~vvs~~ 97 (247)
T 3gt0_A 69 LSIKPD-------LYASIINEIKEIIKNDAIIVTIA 97 (247)
T ss_dssp ECSCTT-------THHHHC---CCSSCTTCEEEECS
T ss_pred EEeCHH-------HHHHHHHHHHhhcCCCCEEEEec
Confidence 865221 24677788888888876655333
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.65 Score=39.49 Aligned_cols=88 Identities=9% Similarity=0.003 Sum_probs=55.4
Q ss_pred CcEEEEcCc--ccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+|..||+| ++.++..+.+.. +..+|+++|.+++-++..++.++ +++ ..|..+. -...|+|++
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~g-----------i~~-~~~~~~~--~~~aDvVil 69 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCG-----------VHT-TQDNRQG--ALNADVVVL 69 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTC-----------CEE-ESCHHHH--HSSCSEEEE
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcC-----------CEE-eCChHHH--HhcCCeEEE
Confidence 579999998 344555555531 22389999999998887776543 222 1222221 245799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhh-ccCCcEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQC-LRKGGRIM 187 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~-L~pgG~l~ 187 (269)
.... . ...+.++.+... |+++-+++
T Consensus 70 av~p------~-~~~~vl~~l~~~~l~~~~iii 95 (280)
T 3tri_A 70 AVKP------H-QIKMVCEELKDILSETKILVI 95 (280)
T ss_dssp CSCG------G-GHHHHHHHHHHHHHTTTCEEE
T ss_pred EeCH------H-HHHHHHHHHHhhccCCCeEEE
Confidence 5522 1 246888889888 87654554
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=90.81 E-value=1.8 Score=36.44 Aligned_cols=75 Identities=8% Similarity=-0.019 Sum_probs=49.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+++++ .+.+|.+++.+++-++...+.+... ..++.++..|..+.
T Consensus 23 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (279)
T 3sju_A 23 RPQTAFVTGVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA------GHDVDGSSCDVTSTDEVHAAVAAA 95 (279)
T ss_dssp --CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHHH
Confidence 4678888887654 444443332 4789999999998777665554211 35799999998864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 96 ~~~~g~id~lv~nAg 110 (279)
T 3sju_A 96 VERFGPIGILVNSAG 110 (279)
T ss_dssp HHHHCSCCEEEECCC
T ss_pred HHHcCCCcEEEECCC
Confidence 12257899998764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=90.70 E-value=1.5 Score=36.23 Aligned_cols=74 Identities=7% Similarity=0.018 Sum_probs=50.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+++.+ .+.+|.+++.+++-++...+.+... ..++.++..|..+.
T Consensus 6 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 6 RNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA------GGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp CSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECcCCCHHHHHHHHHHH
Confidence 3567888887655 444443332 3789999999988776665554211 35799999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
.. ++.|+++.++-
T Consensus 79 ~~~-g~id~lv~nAg 92 (252)
T 3h7a_A 79 DAH-APLEVTIFNVG 92 (252)
T ss_dssp HHH-SCEEEEEECCC
T ss_pred Hhh-CCceEEEECCC
Confidence 12 68999998754
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.79 Score=38.84 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=54.3
Q ss_pred CcEEEEcC-c--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 79 GPIGILGF-G--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~-G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+|..||+ | ++.++..|.+ .+.+|++++.+++.++.+++ .+.. + .+.. ..-...|+|++
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~-~g~~---------~----~~~~--~~~~~aDvVi~ 73 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD--SAHHLAAIEIAPEGRDRLQG-MGIP---------L----TDGD--GWIDEADVVVL 73 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH--SSSEEEEECCSHHHHHHHHH-TTCC---------C----CCSS--GGGGTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHh-cCCC---------c----CCHH--HHhcCCCEEEE
Confidence 48999999 7 3445555555 35799999999988777665 2211 1 1211 22246899998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..... . ..+.++.+...|+++. +++++
T Consensus 74 av~~~------~-~~~v~~~l~~~l~~~~-ivv~~ 100 (286)
T 3c24_A 74 ALPDN------I-IEKVAEDIVPRVRPGT-IVLIL 100 (286)
T ss_dssp CSCHH------H-HHHHHHHHGGGSCTTC-EEEES
T ss_pred cCCch------H-HHHHHHHHHHhCCCCC-EEEEC
Confidence 54321 1 4677888888887765 44554
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=90.55 E-value=2.7 Score=34.74 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+++|+.|+++| +++.+.+++ .+.+|.+++.+++-.+...+.++ .++.++..|..+.
T Consensus 7 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~ 76 (259)
T 4e6p_A 7 EGKSALITGSARG-IGRAFAEAYVREGATVAIADIDIERARQAAAEIG---------PAAYAVQMDVTRQDSIDAAIAAT 76 (259)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CCceEEEeeCCCHHHHHHHHHHH
Confidence 4577888886544 444444332 47899999999987766655542 4688899998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++..+-
T Consensus 77 ~~~~g~id~lv~~Ag 91 (259)
T 4e6p_A 77 VEHAGGLDILVNNAA 91 (259)
T ss_dssp HHHSSSCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 12347999998764
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.17 E-value=3.1 Score=37.90 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=59.4
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc---ccccc-C----CCCcEEEEEccccccccCC
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL---EKLEK-S----YPDRLFVYVGNALKASLKD 148 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~---~~~~~-~----~~~rv~~~~~D~~~~~~~~ 148 (269)
.+|..||+| +..++..+++ .+.+|+++|++++.++..++.... +.... . ...++++. .|..+ .-.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~--~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~e--a~~ 77 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAE--LGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQ--AVP 77 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHH--HGG
T ss_pred CEEEEECcCHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHH--HHh
Confidence 479999998 3344445554 367999999999988877663210 00000 0 01233322 23221 124
Q ss_pred CeeEEEEcCCCCCCCC--CCC-CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLL--SEL-EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~--~~l-~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..|+||+....+.... +.+ ...+.++.+...|++| .++++...
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g-~iVV~~ST 123 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRY-ILIVTKST 123 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSC-EEEEECSC
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCC-CEEEEeee
Confidence 5799998765442110 111 2357778888888875 45555543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.06 E-value=3.4 Score=37.70 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=62.5
Q ss_pred CCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-----------ccccccCCCCcEEEEEcccccc
Q 035593 78 PGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-----------LEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 78 ~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-----------~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+|.+||+|. +.++..+++ .+.+|+++|++++.++.+++... .... .......++ ..|..
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~i-~~~~~-- 110 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFAR--VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ-ASAKPKLRF-SSSTK-- 110 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCEEE-ESCGG--
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhhh-cCCHH--
Confidence 45799999984 344455544 47799999999998887765321 0000 000112233 34432
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.-...|+||...+... -...++++.+...++|+.+++.|..+
T Consensus 111 -~~~~aDlVIeaVpe~~-----~~k~~v~~~l~~~~~~~~ii~snTs~ 152 (463)
T 1zcj_A 111 -ELSTVDLVVEAVFEDM-----NLKKKVFAELSALCKPGAFLCTNTSA 152 (463)
T ss_dssp -GGTTCSEEEECCCSCH-----HHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred -HHCCCCEEEEcCCCCH-----HHHHHHHHHHHhhCCCCeEEEeCCCC
Confidence 2356899998654210 01257888899999998888775543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=1.3 Score=32.60 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=51.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---c--cCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---S--LKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~--~~~~y 150 (269)
.++|+.+|+| .++..+.+.. .+.+|+++|.+++-++.+++. ...++.+|..+. . ..+.+
T Consensus 6 ~~~v~I~G~G--~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~------------~~~~~~~d~~~~~~l~~~~~~~~ 71 (144)
T 2hmt_A 6 NKQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------------ATHAVIANATEENELLSLGIRNF 71 (144)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT------------CSEEEECCTTCHHHHHTTTGGGC
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------------CCEEEEeCCCCHHHHHhcCCCCC
Confidence 4679999974 4444443322 367899999998765433221 235566776543 1 13579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+|+...... ...........+.+.+. .+++..
T Consensus 72 d~vi~~~~~~------~~~~~~~~~~~~~~~~~-~ii~~~ 104 (144)
T 2hmt_A 72 EYVIVAIGAN------IQASTLTTLLLKELDIP-NIWVKA 104 (144)
T ss_dssp SEEEECCCSC------HHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred CEEEECCCCc------hHHHHHHHHHHHHcCCC-eEEEEe
Confidence 9999754321 00122344444556665 555444
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.02 E-value=1.1 Score=38.31 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=54.7
Q ss_pred CcEEEEcCc--ccHHHHHHHHH--CC-C-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc--cc-ccCCC
Q 035593 79 GPIGILGFG--AGSAARLILDL--YP-E-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL--KA-SLKDG 149 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~--~p-~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~--~~-~~~~~ 149 (269)
.+|..||+| ++.++..|.+. .+ + .+|++++. ++.++..++..+.... ...... ...... .. .....
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~---~~~~~~-~~~~~~~~~~~~~~~~ 83 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVV---TPSRDF-LARPTCVTDNPAEVGT 83 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEE---CSSCEE-EECCSEEESCHHHHCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEE---eCCCCe-EEecceEecCccccCC
Confidence 479999999 44555666653 01 4 68999998 7666655542222110 000000 011110 11 12357
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+||+...... ..+.++.+...|+++.++ +.+
T Consensus 84 ~D~vil~vk~~~-------~~~v~~~i~~~l~~~~~i-v~~ 116 (317)
T 2qyt_A 84 VDYILFCTKDYD-------MERGVAEIRPMIGQNTKI-LPL 116 (317)
T ss_dssp EEEEEECCSSSC-------HHHHHHHHGGGEEEEEEE-EEC
T ss_pred CCEEEEecCccc-------HHHHHHHHHhhcCCCCEE-EEc
Confidence 999998654332 478888888888876544 444
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=3.6 Score=34.81 Aligned_cols=73 Identities=10% Similarity=-0.092 Sum_probs=48.1
Q ss_pred CCCcEEEEcCccc-----HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 77 PPGPIGILGFGAG-----SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G-----~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
..+.+|+.|+++| .+++.|++ .+.+|.+++.++...+.+++.... ..++.++..|..+.
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAARE--AGAELAFTYQGDALKKRVEPLAEE-------LGAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHH--TTCEEEEEECSHHHHHHHHHHHHH-------HTCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHh-------cCCceEEECCCCCHHHHHHHH
Confidence 5678999998754 23344444 478999999997655554443221 13588899998764
Q ss_pred ----ccCCCeeEEEEcCC
Q 035593 145 ----SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ----~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 101 ~~~~~~~g~iD~lVnnAG 118 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIG 118 (293)
T ss_dssp HHHHHHTSCCSEEEECCC
T ss_pred HHHHHhcCCCCEEEECCc
Confidence 12357999998754
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.87 E-value=2 Score=35.54 Aligned_cols=75 Identities=13% Similarity=-0.008 Sum_probs=50.9
Q ss_pred CCCcEEEEcC-cccH---HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------
Q 035593 77 PPGPIGILGF-GAGS---AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------- 144 (269)
Q Consensus 77 ~~~~VL~iG~-G~G~---~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------- 144 (269)
..++||+.|+ |.|. +++.|++ .+.+|++++.+++-.+...+.+... ...++.++..|..+.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALL--EGADVVISDYHERRLGETRDQLADL-----GLGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTT-----CSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHH--CCCEEEEecCCHHHHHHHHHHHHhc-----CCCceEEEEeCCCCHHHHHHHHH
Confidence 4678999887 4442 3344444 4789999999998777666654211 135799999999874
Q ss_pred ---ccCCCeeEEEEcCC
Q 035593 145 ---SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ---~~~~~yD~I~~d~~ 158 (269)
...++.|+++..+-
T Consensus 94 ~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 94 QTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHhCCCcEEEECCC
Confidence 11247899998754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.84 E-value=2.5 Score=34.55 Aligned_cols=74 Identities=8% Similarity=-0.102 Sum_probs=49.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+++|+.|+++| +++.+.+++ .+.+|.+++.+++-.+...+.+... ..++.++..|..+.
T Consensus 5 ~k~vlITGas~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 5 EKVALVTGASRG-IGFEVAHALASKGATVVGTATSQASAEKFENSMKEK------GFKARGLVLNISDIESIQNFFAEIK 77 (247)
T ss_dssp TCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHH
Confidence 567888886544 444444332 3789999999998776665544211 35789999998764
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
...++.|+++..+-
T Consensus 78 ~~~~~id~li~~Ag 91 (247)
T 3lyl_A 78 AENLAIDILVNNAG 91 (247)
T ss_dssp HTTCCCSEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 12357899998754
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.73 Score=43.05 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=48.0
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCC-c-------HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 146 LKDGFSGILVDLFSKGSLLSELE-D-------PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~-~-------~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
...+||+||++.-.+- ...|.. . .-+=.....+|+|||.+++-.++.. +.....++..+.+
T Consensus 218 ~~~ryDlvfvn~~t~y-r~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyA----------Dr~sE~vv~alaR 286 (670)
T 4gua_A 218 PQARYDLVFINIGTKY-RNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYA----------DRNSEDVVTALAR 286 (670)
T ss_dssp CCCCEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC----------SHHHHHHHHHHHH
T ss_pred CCCcccEEEEecCCCc-ccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeecc----------ccchHHHHHHHHh
Confidence 3569999999876542 111110 0 1233456789999999999988752 4567889999999
Q ss_pred HhcCceEEEE
Q 035593 218 VFGKKLYVLS 227 (269)
Q Consensus 218 ~F~~~v~~~~ 227 (269)
.|. .+.+..
T Consensus 287 kF~-~~rv~~ 295 (670)
T 4gua_A 287 KFV-RVSAAR 295 (670)
T ss_dssp TEE-EEEEEC
T ss_pred hee-eeeeeC
Confidence 995 566554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.71 E-value=2.4 Score=35.30 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=48.0
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++||+.| + |.++..+.+.+ .+.+|+++..++.-.+.... .+++++.+|..++. -..+|+|+..
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~------------~~~~~~~~D~~d~~-~~~~d~vi~~ 70 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA------------SGAEPLLWPGEEPS-LDGVTHLLIS 70 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH------------TTEEEEESSSSCCC-CTTCCEEEEC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh------------CCCeEEEecccccc-cCCCCEEEEC
Confidence 5899999 4 88887777654 26799999998865433221 35899999988766 5678999976
Q ss_pred CC
Q 035593 157 LF 158 (269)
Q Consensus 157 ~~ 158 (269)
+.
T Consensus 71 a~ 72 (286)
T 3ius_A 71 TA 72 (286)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.98 Score=37.69 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=55.2
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+|..||+| +..++..+.+. +.+ |.++|.+++.++.+.+.++. .+ ..|..+. -...|+|++
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~~~g~-----------~~-~~~~~~~--~~~~Dvvi~ 74 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQKVEA-----------EY-TTDLAEV--NPYAKLYIV 74 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHHHTTC-----------EE-ESCGGGS--CSCCSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCC-----------ce-eCCHHHH--hcCCCEEEE
Confidence 589999997 33444555543 455 89999999988776665432 21 2232222 236899997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..... ...+.++.+...++++.++ +++.+
T Consensus 75 av~~~-------~~~~v~~~l~~~~~~~~iv-v~~s~ 103 (266)
T 3d1l_A 75 SLKDS-------AFAELLQGIVEGKREEALM-VHTAG 103 (266)
T ss_dssp CCCHH-------HHHHHHHHHHTTCCTTCEE-EECCT
T ss_pred ecCHH-------HHHHHHHHHHhhcCCCcEE-EECCC
Confidence 54322 1267777887778775544 55443
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=89.48 E-value=2.7 Score=34.81 Aligned_cols=72 Identities=13% Similarity=-0.002 Sum_probs=50.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+++|+.|+++| +++.+++++ .+.+|..++.+++-++...+.++ .++.++..|..+.
T Consensus 7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEFG---------PRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CcceEEEccCCCHHHHHHHHHHH
Confidence 4678898887654 444444332 47899999999988776665542 3688999998864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 77 ~~~~g~id~lv~nAg 91 (255)
T 4eso_A 77 GQTLGAIDLLHINAG 91 (255)
T ss_dssp HHHHSSEEEEEECCC
T ss_pred HHHhCCCCEEEECCC
Confidence 12257999998753
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=89.40 E-value=2.2 Score=34.07 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=55.7
Q ss_pred cEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 80 PIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
+||+.|+ +|.+++.+.+.+ .+.+|+++..++.-.+.. . .++++++.+|..+. ..-+..|+||.
T Consensus 2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~---------~~~~~~~~~D~~d~~~~~~~~~d~vi~ 68 (224)
T 3h2s_A 2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADR---L---------GATVATLVKEPLVLTEADLDSVDAVVD 68 (224)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH---T---------CTTSEEEECCGGGCCHHHHTTCSEEEE
T ss_pred EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccc---c---------CCCceEEecccccccHhhcccCCEEEE
Confidence 5888885 455555544432 367999999998654321 1 24689999998876 22346899997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMV 188 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~ 188 (269)
.+................+.+.+.++.. +.+++
T Consensus 69 ~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~ 102 (224)
T 3h2s_A 69 ALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVF 102 (224)
T ss_dssp CCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred CCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEE
Confidence 6543211011111234445555666554 44443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.40 E-value=2.7 Score=35.87 Aligned_cols=90 Identities=9% Similarity=0.099 Sum_probs=51.3
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++++|+.||+|. |......++.+ +.+|+++|.+++-.+.+++ ++ ++.+.. .+. ..-...|+|+
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~~-~g-----------~~~~~~--~~l~~~l~~aDvVi 220 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSSAHLARITE-MG-----------LVPFHT--DELKEHVKDIDICI 220 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TT-----------CEEEEG--GGHHHHSTTCSEEE
T ss_pred CCCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-CC-----------CeEEch--hhHHHHhhCCCEEE
Confidence 578999999863 22222223333 6799999999876554433 22 222211 122 2235789999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..... ++...+ ..+.++|+++ ++|+..
T Consensus 221 ~~~p~------~~i~~~----~~~~mk~g~~-lin~a~ 247 (300)
T 2rir_A 221 NTIPS------MILNQT----VLSSMTPKTL-ILDLAS 247 (300)
T ss_dssp ECCSS------CCBCHH----HHTTSCTTCE-EEECSS
T ss_pred ECCCh------hhhCHH----HHHhCCCCCE-EEEEeC
Confidence 75432 333443 3467888665 467754
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=89.40 E-value=1.4 Score=38.26 Aligned_cols=92 Identities=15% Similarity=0.058 Sum_probs=59.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..+|+.+|+ |..+..+++.. .+. |+++|.||+.++ +++. .+.++.+|+.+. ..-+..
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~------------~~~~i~gd~~~~~~L~~a~i~~a 178 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLRS------------GANFVHGDPTRVSDLEKANVRGA 178 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHT------------TCEEEESCTTSHHHHHHTCSTTE
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhC------------CcEEEEeCCCCHHHHHhcChhhc
Confidence 347999987 56666666543 255 999999999888 5541 378999999875 235689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|.|++...+.. .--......+.+.|...++.-..+
T Consensus 179 ~~vi~~~~~d~-------~n~~~~~~ar~~~~~~~iiar~~~ 213 (336)
T 1lnq_A 179 RAVIVDLESDS-------ETIHCILGIRKIDESVRIIAEAER 213 (336)
T ss_dssp EEEEECCSSHH-------HHHHHHHHHHTTCTTSEEEEECSS
T ss_pred cEEEEcCCccH-------HHHHHHHHHHHHCCCCeEEEEECC
Confidence 99987443210 122334455667777666665543
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=1.9 Score=37.64 Aligned_cols=69 Identities=16% Similarity=0.028 Sum_probs=44.0
Q ss_pred CCcEEEEcCcc-cH--HHHHHHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 78 PGPIGILGFGA-GS--AARLILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~-G~--~~~~l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
+.+|..||||. |. .+..+.+ .|+.+++ ++|.+++..+...+.++. ... .|..+.......|+|
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~-~~~~~l~av~d~~~~~~~~~a~~~g~-----------~~~-~~~~~ll~~~~~D~V 93 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEA-EPLTEVTAIASRRWDRAKRFTERFGG-----------EPV-EGYPALLERDDVDAV 93 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHH-CTTEEEEEEEESSHHHHHHHHHHHCS-----------EEE-ESHHHHHTCTTCSEE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHh-CCCeEEEEEEcCCHHHHHHHHHHcCC-----------CCc-CCHHHHhcCCCCCEE
Confidence 46899999984 32 3444444 5788877 559999877766555543 222 455555445678888
Q ss_pred EEcCCC
Q 035593 154 LVDLFS 159 (269)
Q Consensus 154 ~~d~~~ 159 (269)
++....
T Consensus 94 ~i~tp~ 99 (350)
T 3rc1_A 94 YVPLPA 99 (350)
T ss_dssp EECCCG
T ss_pred EECCCc
Confidence 875443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=89.22 E-value=0.87 Score=32.34 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~y 150 (269)
..+|+.+|+ |.++..+.+.. .+ .+|++++.+++-++..+. ..++++..|..+. ..-..+
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~ 70 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR------------MGVATKQVDAKDEAGLAKALGGF 70 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT------------TTCEEEECCTTCHHHHHHHTTTC
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh------------CCCcEEEecCCCHHHHHHHHcCC
Confidence 458999998 44444333321 24 799999999987766541 2356677777653 223578
Q ss_pred eEEEEcC
Q 035593 151 SGILVDL 157 (269)
Q Consensus 151 D~I~~d~ 157 (269)
|+|+..+
T Consensus 71 d~vi~~~ 77 (118)
T 3ic5_A 71 DAVISAA 77 (118)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 9999754
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=0.54 Score=43.59 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=54.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
..+.++|+++|+| -|......++.+ +.+|+++|+++.-.+.|++. +. ++ .+..+. -...|+|
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~-Ga-----------~~--~~l~e~--l~~aDvV 333 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME-GF-----------DV--VTVEEA--IGDADIV 333 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT-TC-----------EE--CCHHHH--GGGCSEE
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CC-----------EE--ecHHHH--HhCCCEE
Confidence 4568899999987 343334444443 67999999999888777653 21 11 122111 2468999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+..... .++.. ....+.|++||+++ |+..
T Consensus 334 i~atgt-----~~~i~----~~~l~~mk~ggilv-nvG~ 362 (494)
T 3ce6_A 334 VTATGN-----KDIIM----LEHIKAMKDHAILG-NIGH 362 (494)
T ss_dssp EECSSS-----SCSBC----HHHHHHSCTTCEEE-ECSS
T ss_pred EECCCC-----HHHHH----HHHHHhcCCCcEEE-EeCC
Confidence 864321 12222 24455689988774 5543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.14 E-value=2.5 Score=36.94 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCc-eEEEEECChH---HHHHHHHhcCccccccCCCCcEEEEEc------cc
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEA-VIHGWELDPS---VIKVAREFFALEKLEKSYPDRLFVYVG------NA 141 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~-~v~~vEidp~---~~~~a~~~~~~~~~~~~~~~rv~~~~~------D~ 141 (269)
.+.+..+||++|+ |.|.++..+++.. ++ .|.+++.++. -.+.+++ ++.. .++.. +.
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~-lGa~----------~vi~~~~~~~~~~ 231 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKS-LGAE----------HVITEEELRRPEM 231 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHH-TTCS----------EEEEHHHHHSGGG
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHh-cCCc----------EEEecCcchHHHH
Confidence 4567899999996 4677888888865 55 4556666543 3556654 3321 12211 11
Q ss_pred cccccC-CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 142 LKASLK-DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 142 ~~~~~~-~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+.... ..+|+|+ |+.. ...+ ..+.+.|+++|.++.-
T Consensus 232 ~~~~~~~~~~Dvvi-d~~g---------~~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 232 KNFFKDMPQPRLAL-NCVG---------GKSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp GGTTSSSCCCSEEE-ESSC---------HHHH-HHHHTTSCTTCEEEEC
T ss_pred HHHHhCCCCceEEE-ECCC---------cHHH-HHHHHhhCCCCEEEEE
Confidence 122111 2599987 4322 1223 4578999999998764
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=3.5 Score=33.30 Aligned_cols=75 Identities=9% Similarity=-0.091 Sum_probs=48.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S------ 145 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~------ 145 (269)
.+.+|+.|+++ .+++.+++++ .+.+|..++.+++-.+...+.+.... ..++.++..|..+. .
T Consensus 2 ~k~vlITGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (235)
T 3l77_A 2 MKVAVITGASR-GIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-----GVEVFYHHLDVSKAESVEEFSKKVL 75 (235)
T ss_dssp CCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHCC-HH
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCeEEEEEeccCCHHHHHHHHHHHH
Confidence 35688888654 4444444433 37899999999887766554432111 35799999998864 0
Q ss_pred -cCCCeeEEEEcCC
Q 035593 146 -LKDGFSGILVDLF 158 (269)
Q Consensus 146 -~~~~yD~I~~d~~ 158 (269)
..++.|+++..+-
T Consensus 76 ~~~g~id~li~~Ag 89 (235)
T 3l77_A 76 ERFGDVDVVVANAG 89 (235)
T ss_dssp HHHSSCSEEEECCC
T ss_pred HhcCCCCEEEECCc
Confidence 1247899998754
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=1.8 Score=39.83 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 77 PPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..++|..||+| ++.++..|++ .+.+|++.+.+++.++...+..+ +..+.. ..|..+. ..-++.|+|
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~--~G~~V~v~~r~~~~~~~l~~~~~--------~~gi~~-~~s~~e~v~~l~~aDvV 82 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIES--RGYTVSIFNRSREKTEEVIAENP--------GKKLVP-YYTVKEFVESLETPRRI 82 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHST--------TSCEEE-CSSHHHHHHTBCSSCEE
T ss_pred CCCeEEEEccHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHhhCC--------CCCeEE-eCCHHHHHhCCCCCCEE
Confidence 35689999998 3445555554 46789999999988876665431 012322 1233333 222358999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++.+... ....+.++.+...|++|- +++++.+.
T Consensus 83 il~Vp~~------~~v~~vl~~l~~~l~~g~-iIId~s~g 115 (480)
T 2zyd_A 83 LLMVKAG------AGTDAAIDSLKPYLDKGD-IIIDGGNT 115 (480)
T ss_dssp EECSCSS------SHHHHHHHHHGGGCCTTC-EEEECSCC
T ss_pred EEECCCH------HHHHHHHHHHHhhcCCCC-EEEECCCC
Confidence 9865432 125678888888888755 55666554
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=1.6 Score=40.05 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=59.8
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.+|..||+| +..++..+++ .+.+|.+++.+++.++...+..+ ...+.. ..|..+. ...++.|+|++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~--------~~gi~~-~~s~~e~v~~l~~aDvVil 74 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVES--RGYTVAIYNRTTSKTEEVFKEHQ--------DKNLVF-TKTLEEFVGSLEKPRRIML 74 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHTT--------TSCEEE-CSSHHHHHHTBCSSCEEEE
T ss_pred CcEEEEeeHHHHHHHHHHHHh--CCCEEEEEcCCHHHHHHHHHhCc--------CCCeEE-eCCHHHHHhhccCCCEEEE
Confidence 479999998 3445555555 35689999999988877665432 012321 2333333 22245899998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..... ....+.++.+...|++|- +++++.+.
T Consensus 75 avp~~------~~v~~vl~~l~~~l~~g~-iiId~s~~ 105 (474)
T 2iz1_A 75 MVQAG------AATDATIKSLLPLLDIGD-ILIDGGNT 105 (474)
T ss_dssp CCCTT------HHHHHHHHHHGGGCCTTC-EEEECSCC
T ss_pred EccCc------hHHHHHHHHHHhhCCCCC-EEEECCCC
Confidence 65432 124577788888888765 45566443
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.89 E-value=2.2 Score=34.86 Aligned_cols=72 Identities=14% Similarity=0.034 Sum_probs=49.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------ccC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SLK 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~ 147 (269)
+.++||+.|+++| +++.+++.+ .+.+|.+++.+++-++...+.+. .++.++..|..+. ...
T Consensus 13 ~~k~vlVTGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 13 TGKTSLITGASSG-IGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK---------DNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------SSEEEEECCTTSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc---------cCccEEEcCCCCHHHHHHHHHhc
Confidence 4678888887654 444444332 37899999999987776655542 3688888998764 233
Q ss_pred CCeeEEEEcCC
Q 035593 148 DGFSGILVDLF 158 (269)
Q Consensus 148 ~~yD~I~~d~~ 158 (269)
++.|+++..+.
T Consensus 83 ~~id~li~~Ag 93 (249)
T 3f9i_A 83 SNLDILVCNAG 93 (249)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57999998653
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=88.88 E-value=0.43 Score=42.08 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=58.6
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-cCCCeeEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-LKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~yD~I 153 (269)
..+|..||+| ++.++..+.+ .+.+|+++|.+++.++.+++. + +.. ..|..+. . .....|+|
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~~~~~~a~~~-G-----------~~~-~~~~~e~~~~a~~~aDlV 72 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHA--ANHSVFGYNRSRSGAKSAVDE-G-----------FDV-SADLEATLQRAAAEDALI 72 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSCHHHHHHHHHT-T-----------CCE-ESCHHHHHHHHHHTTCEE
T ss_pred CCEEEEEeecHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc-C-----------Cee-eCCHHHHHHhcccCCCEE
Confidence 4589999998 5667777766 367999999999988887653 2 111 2233222 1 11246999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++..... ...+.++.+... +|+ .+++++.+.
T Consensus 73 ilavP~~-------~~~~vl~~l~~~-~~~-~iv~Dv~Sv 103 (341)
T 3ktd_A 73 VLAVPMT-------AIDSLLDAVHTH-APN-NGFTDVVSV 103 (341)
T ss_dssp EECSCHH-------HHHHHHHHHHHH-CTT-CCEEECCSC
T ss_pred EEeCCHH-------HHHHHHHHHHcc-CCC-CEEEEcCCC
Confidence 9854321 245777777765 665 667777554
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.80 E-value=2.6 Score=35.89 Aligned_cols=75 Identities=11% Similarity=-0.024 Sum_probs=51.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.||+.|+++| +++.+++.+ .+.+|.+++.+++-++.+.+.+... ..++.++..|..+.
T Consensus 30 ~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 30 DGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ------GFDAHGVVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHH
Confidence 4678999987755 444443332 4789999999998877766654311 35789999998875
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...++.|+++.++-
T Consensus 103 ~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHSSCSEEEECCC
T ss_pred HHhCCCCCEEEECCC
Confidence 11247899998754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.78 E-value=5.5 Score=33.17 Aligned_cols=75 Identities=8% Similarity=-0.069 Sum_probs=47.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECC------------hHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELD------------PSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEid------------p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
..+.||+.|+++| +++.+++++ .+.+|.+++.+ .+-++.+...+... ..++.++..|..
T Consensus 9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~ 81 (287)
T 3pxx_A 9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT------GRKAYTAEVDVR 81 (287)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT------TSCEEEEECCTT
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc------CCceEEEEccCC
Confidence 4678888887654 444433332 37899999987 55554444433211 357999999988
Q ss_pred cc-----------ccCCCeeEEEEcCC
Q 035593 143 KA-----------SLKDGFSGILVDLF 158 (269)
Q Consensus 143 ~~-----------~~~~~yD~I~~d~~ 158 (269)
+. ..-++.|+++.++-
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg 108 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAG 108 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 64 11247899998753
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=88.75 E-value=0.39 Score=41.91 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=50.6
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccc-ccccCCCeeEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NAL-KASLKDGFSGIL 154 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~-~~~~~~~yD~I~ 154 (269)
.+|++||+| ++.++..|++ .+.+|+.++.++ .++..++. ++... .+..+.... .+. +...-..+|+|+
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~--~g~~V~~~~r~~-~~~~~~~~-g~~~~----~~~~~~~~~~~~~~~~~~~~~~D~Vi 75 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLAL--AGEAINVLARGA-TLQALQTA-GLRLT----EDGATHTLPVRATHDAAALGEQDVVI 75 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHH--TTCCEEEECCHH-HHHHHHHT-CEEEE----ETTEEEEECCEEESCHHHHCCCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCEEEEEEChH-HHHHHHHC-CCEEe----cCCCeEEEeeeEECCHHHcCCCCEEE
Confidence 589999998 3445555555 356899999864 44443332 22110 011111110 000 011125799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+..... ...+.++.+...|+++.+++.
T Consensus 76 lavk~~-------~~~~~~~~l~~~l~~~~~iv~ 102 (335)
T 3ghy_A 76 VAVKAP-------ALESVAAGIAPLIGPGTCVVV 102 (335)
T ss_dssp ECCCHH-------HHHHHHGGGSSSCCTTCEEEE
T ss_pred EeCCch-------hHHHHHHHHHhhCCCCCEEEE
Confidence 854321 245677777777777766554
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.71 E-value=3.3 Score=35.24 Aligned_cols=90 Identities=10% Similarity=0.100 Sum_probs=51.0
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
+.++|+.||+|. |......++.+ +.+|++++.+++-.+.+++ ++ ++.+. ..++ ..-...|+|+
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~-~g-----------~~~~~--~~~l~~~l~~aDvVi 218 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARIAE-MG-----------MEPFH--ISKAAQELRDVDVCI 218 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TT-----------SEEEE--GGGHHHHTTTCSEEE
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH-CC-----------CeecC--hhhHHHHhcCCCEEE
Confidence 578999999872 33222333333 6799999999876555443 22 12221 1122 2235789999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..+. .++...+. .+.+++++++ +|+..
T Consensus 219 ~~~p------~~~i~~~~----l~~mk~~~~l-in~ar 245 (293)
T 3d4o_A 219 NTIP------ALVVTANV----LAEMPSHTFV-IDLAS 245 (293)
T ss_dssp ECCS------SCCBCHHH----HHHSCTTCEE-EECSS
T ss_pred ECCC------hHHhCHHH----HHhcCCCCEE-EEecC
Confidence 7543 23334443 3467886654 67753
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=88.71 E-value=1.7 Score=39.92 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=61.1
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHH-HHHHhc------C-ccccc-cCCCCcEEEEEcccccccc
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIK-VAREFF------A-LEKLE-KSYPDRLFVYVGNALKASL 146 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~-~a~~~~------~-~~~~~-~~~~~rv~~~~~D~~~~~~ 146 (269)
-++|.+||+| ++.++..+++ .+.+|+++|++++-.. ..++.+ + +.... .....++++. .|.. .
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~--aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl~---a 127 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGL--AGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDFH---K 127 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCGG---G
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCHH---H
Confidence 3689999999 4556666665 4789999999998211 011111 0 00000 0001244432 2322 2
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-...|+||..++... -...++|+++...++|+.+++.|..+.
T Consensus 128 l~~aDlVIeAVpe~~-----~vk~~v~~~l~~~~~~~aIlasnTSsl 169 (460)
T 3k6j_A 128 LSNCDLIVESVIEDM-----KLKKELFANLENICKSTCIFGTNTSSL 169 (460)
T ss_dssp CTTCSEEEECCCSCH-----HHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred HccCCEEEEcCCCCH-----HHHHHHHHHHHhhCCCCCEEEecCCCh
Confidence 356899997654321 113578899999999998888777543
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=88.68 E-value=4.3 Score=34.78 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=55.3
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCc-eEEEEECC--hHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEA-VIHGWELD--PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~-~v~~vEid--p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
..+|..||+| +..++..|++. +. +|+++|.+ ++..+.+++. + ++. ..+..+. -...|+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~-g-----------~~~-~~~~~e~--~~~aDv 86 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA--GAIDMAAYDAASAESWRPRAEEL-G-----------VSC-KASVAEV--AGECDV 86 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH--SCCEEEEECSSCHHHHHHHHHHT-T-----------CEE-CSCHHHH--HHHCSE
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCeEEEEcCCCCHHHHHHHHHC-C-----------CEE-eCCHHHH--HhcCCE
Confidence 3589999998 34555666653 55 89999997 5666665542 2 121 1122111 235799
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|++.+.... ..+.++.+...|+++.+ +++..+.
T Consensus 87 Vi~~vp~~~-------~~~~~~~l~~~l~~~~i-vvd~st~ 119 (312)
T 3qsg_A 87 IFSLVTAQA-------ALEVAQQAGPHLCEGAL-YADFTSC 119 (312)
T ss_dssp EEECSCTTT-------HHHHHHHHGGGCCTTCE-EEECCCC
T ss_pred EEEecCchh-------HHHHHHhhHhhcCCCCE-EEEcCCC
Confidence 998655432 34677888888988654 4555443
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.67 E-value=1.3 Score=40.79 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=59.2
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+| ++.++..|++ .+.+|++++.+++.++...+..+..+ ...++. ...|..+. ..-+..|+|++.
T Consensus 3 kIgVIG~G~mG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~g~~~----~~~~i~-~~~~~~e~v~~l~~aDvVila 75 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAE--KGFKVAVFNRTYSKSEEFMKANASAP----FAGNLK-AFETMEAFAASLKKPRKALIL 75 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHTTTST----TGGGEE-ECSCHHHHHHHBCSSCEEEEC
T ss_pred EEEEEChHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhcCCCC----CCCCeE-EECCHHHHHhcccCCCEEEEe
Confidence 68999988 3444555555 35689999999998877766543211 011232 12233332 222358999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.... ....+.++.+...|++|- ++++..+
T Consensus 76 Vp~~------~~v~~vl~~l~~~l~~g~-iIId~sn 104 (478)
T 1pgj_A 76 VQAG------AATDSTIEQLKKVFEKGD-ILVDTGN 104 (478)
T ss_dssp CCCS------HHHHHHHHHHHHHCCTTC-EEEECCC
T ss_pred cCCh------HHHHHHHHHHHhhCCCCC-EEEECCC
Confidence 5432 114677888888898865 4556543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.62 E-value=2.5 Score=35.40 Aligned_cols=74 Identities=12% Similarity=-0.082 Sum_probs=49.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.+|+.|+++| +++.+++.+ .+.+|.+++.+++-++...+.+... ..++.++..|..+.
T Consensus 4 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~ 76 (264)
T 3tfo_A 4 DKVILITGASGG-IGEGIARELGVAGAKILLGARRQARIEAIATEIRDA------GGTALAQVLDVTDRHSVAAFAQAAV 76 (264)
T ss_dssp TCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 466788776644 444444332 4789999999998777665554211 35688889998764
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 77 ~~~g~iD~lVnnAG 90 (264)
T 3tfo_A 77 DTWGRIDVLVNNAG 90 (264)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 12257899998753
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=88.61 E-value=1.3 Score=38.50 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=41.5
Q ss_pred CCcEEEEcCcc-c-HHHHHHHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 78 PGPIGILGFGA-G-SAARLILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~-G-~~~~~l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+|..||||. | ..+..+.+..++.+++ ++|.+++..+.+.+.++.+ . ...|..+.......|+|+
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~----------~-~~~~~~~~l~~~~~D~V~ 76 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVE----------T-TYTNYKDMIDTENIDAIF 76 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCS----------E-EESCHHHHHTTSCCSEEE
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCC----------c-ccCCHHHHhcCCCCCEEE
Confidence 45899999984 3 2334444235677765 5699998876655554421 1 224444443334688888
Q ss_pred EcCC
Q 035593 155 VDLF 158 (269)
Q Consensus 155 ~d~~ 158 (269)
+...
T Consensus 77 i~tp 80 (346)
T 3cea_A 77 IVAP 80 (346)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 7543
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=88.44 E-value=1.3 Score=38.50 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC---CCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY---PEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~---p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
..++||+.|+ +|.++..+.+++ ++. +|++++.++.-.+..++.+. .++++++.+|..+. ..-+
T Consensus 20 ~~k~vlVTGa-tG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~--------~~~v~~~~~Dl~d~~~l~~~~~ 90 (344)
T 2gn4_A 20 DNQTILITGG-TGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN--------DPRMRFFIGDVRDLERLNYALE 90 (344)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC--------CTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc--------CCCEEEEECCCCCHHHHHHHHh
Confidence 4678998885 455555554432 255 99999999876655444432 25799999999875 2234
Q ss_pred CeeEEEEcCC
Q 035593 149 GFSGILVDLF 158 (269)
Q Consensus 149 ~yD~I~~d~~ 158 (269)
..|+||..+.
T Consensus 91 ~~D~Vih~Aa 100 (344)
T 2gn4_A 91 GVDICIHAAA 100 (344)
T ss_dssp TCSEEEECCC
T ss_pred cCCEEEECCC
Confidence 7899997653
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.41 E-value=1.6 Score=37.71 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=42.4
Q ss_pred CcEEEEcCcc-c-HHHHHHHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 79 GPIGILGFGA-G-SAARLILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G~-G-~~~~~l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+|..||||. | ..+..+.+ .++.+++ ++|.+++..+...+.++ +. ..|..+.......|+|++
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~-~~~~~l~av~d~~~~~~~~~~~~~~-----------~~--~~~~~~~l~~~~~D~V~i 69 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSG-NADARLVAVADAFPAAAEAIAGAYG-----------CE--VRTIDAIEAAADIDAVVI 69 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHH-CTTEEEEEEECSSHHHHHHHHHHTT-----------CE--ECCHHHHHHCTTCCEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhh-CCCcEEEEEECCCHHHHHHHHHHhC-----------CC--cCCHHHHhcCCCCCEEEE
Confidence 4799999984 2 23334443 5788887 58999988776655543 22 345555433456888887
Q ss_pred cCCC
Q 035593 156 DLFS 159 (269)
Q Consensus 156 d~~~ 159 (269)
....
T Consensus 70 ~tp~ 73 (331)
T 4hkt_A 70 CTPT 73 (331)
T ss_dssp CSCG
T ss_pred eCCc
Confidence 5543
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=88.28 E-value=2.2 Score=39.29 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=60.2
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc-Cc--cccccC----CCCcEEEEEccccccccCCC
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFF-AL--EKLEKS----YPDRLFVYVGNALKASLKDG 149 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~-~~--~~~~~~----~~~rv~~~~~D~~~~~~~~~ 149 (269)
.+|..||+| ++.++..|++..++.+|+++|++++.++..++.. .. +..... ...++++ ..|..+ .-..
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~-t~~~~~--~~~~ 86 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF-SSDIPK--AIAE 86 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHH--HHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHH--Hhhc
Confidence 489999999 4455666776545779999999999888765421 00 000000 0012222 122111 1135
Q ss_pred eeEEEEcCCCCCCC-------CCCC-CcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSL-------LSEL-EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~-------~~~l-~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.|+||+....+... .+.+ ...+.++.+.+.|++|-++ ++.
T Consensus 87 aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iV-V~~ 134 (481)
T 2o3j_A 87 ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIV-VEK 134 (481)
T ss_dssp CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEE-EEC
T ss_pred CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEE-EEC
Confidence 79999876544210 0111 1356778888889885544 554
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=88.26 E-value=1.5 Score=37.37 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=48.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE-Ecccccc----ccCC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY-VGNALKA----SLKD 148 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~-~~D~~~~----~~~~ 148 (269)
.+.++||+.|+ +|.++.++.+.+ .+.+|++++.++.-.+...+.+... ...+++++ .+|..+. ..-+
T Consensus 9 ~~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~d~~~~~~~~~ 82 (342)
T 1y1p_A 9 PEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK-----YPGRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp CTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-----STTTEEEEECSCTTSTTTTTTTTT
T ss_pred CCCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhcc-----CCCceEEEEecCCcChHHHHHHHc
Confidence 34678999986 455555554432 3679999999887654443332110 02468888 7898765 2223
Q ss_pred CeeEEEEcCC
Q 035593 149 GFSGILVDLF 158 (269)
Q Consensus 149 ~yD~I~~d~~ 158 (269)
..|+|+..+.
T Consensus 83 ~~d~vih~A~ 92 (342)
T 1y1p_A 83 GAAGVAHIAS 92 (342)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEEeCC
Confidence 6899997654
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=88.23 E-value=4 Score=33.83 Aligned_cols=77 Identities=17% Similarity=0.080 Sum_probs=50.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+.+++ .+.+|.+++.+++-.+.+.+.+.... ...++.++..|..+.
T Consensus 7 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~ 81 (265)
T 3lf2_A 7 SEAVAVVTGGSSG-IGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF----PGARLFASVCDVLDALQVRAFAEAC 81 (265)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS----TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc----CCceEEEEeCCCCCHHHHHHHHHHH
Confidence 4677888887655 444443332 37899999999987766655442100 134689999998864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 82 ~~~~g~id~lvnnAg 96 (265)
T 3lf2_A 82 ERTLGCASILVNNAG 96 (265)
T ss_dssp HHHHCSCSEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 11257899998764
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.20 E-value=4.6 Score=33.87 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=48.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+++.+ .+.+|.+++.+++-.+...+.. ..++.++..|..+.
T Consensus 26 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 26 NQRVCIVTGGGSG-IGRATAELFAKNGAYVVVADVNEDAAVRVANEI---------GSKAFGVRVDVSSAKDAESMVEKT 95 (277)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEecCCCHHHHHHHHHHH
Confidence 4677888887654 444444332 4789999999998776655543 24688899998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 96 ~~~~g~iD~lv~nAg 110 (277)
T 4dqx_A 96 TAKWGRVDVLVNNAG 110 (277)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 11247899998764
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=88.18 E-value=4.1 Score=33.95 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=47.1
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------c
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----------S 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----------~ 145 (269)
+.||+-|++.| +++.+++.+ .+++|..++++++..+...+. .+++..+.+|..+. .
T Consensus 3 K~vlVTGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 3 RGVIVTGGGHG-IGKQICLDFLEAGDKVCFIDIDEKRSADFAKE----------RPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT----------CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEecCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 56888887665 333333333 488999999999876654443 24688889998764 1
Q ss_pred cCCCeeEEEEcCC
Q 035593 146 LKDGFSGILVDLF 158 (269)
Q Consensus 146 ~~~~yD~I~~d~~ 158 (269)
.-++.|+++.++-
T Consensus 72 ~~g~iDiLVNNAG 84 (247)
T 3ged_A 72 KLQRIDVLVNNAC 84 (247)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 2367899998763
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=88.15 E-value=1.4 Score=40.45 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
+.++|+.+|+| .++..+++.. ...+|..+|.|++-.+...+.+ ++..+++||+.+. ..-+..
T Consensus 234 ~~~~v~I~GgG--~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l----------~~~~Vi~GD~td~~~L~ee~i~~~ 301 (461)
T 4g65_A 234 PYRRIMIVGGG--NIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL----------ENTIVFCGDAADQELLTEENIDQV 301 (461)
T ss_dssp CCCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC----------TTSEEEESCTTCHHHHHHTTGGGC
T ss_pred cccEEEEEcch--HHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC----------CCceEEeccccchhhHhhcCchhh
Confidence 46789998866 3444444433 3679999999999988877765 3578999999985 234678
Q ss_pred eEEEE
Q 035593 151 SGILV 155 (269)
Q Consensus 151 D~I~~ 155 (269)
|+++.
T Consensus 302 D~~ia 306 (461)
T 4g65_A 302 DVFIA 306 (461)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 99885
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=88.14 E-value=1.9 Score=36.74 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=54.3
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
..+|..||+| +..++..|++ .+.+|+++|.+++.++.+.+. +. .....+..+. -...|+|++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~~~~~~~~~~-g~-----------~~~~~~~~e~--~~~aDvvi~ 70 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLR--AGLSTWGADLNPQACANLLAE-GA-----------CGAAASAREF--AGVVDALVI 70 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHT-TC-----------SEEESSSTTT--TTTCSEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHc-CC-----------ccccCCHHHH--HhcCCEEEE
Confidence 3579999988 3344555555 367999999999988776653 11 1112232222 245799998
Q ss_pred cCCCCCCCCCCCCcHHHH---HHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTW---EKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~---~~~~~~L~pgG~l~~~~~~~ 193 (269)
...... ...+.+ +.+...|++|. ++++..+.
T Consensus 71 ~vp~~~------~~~~v~~~~~~l~~~l~~g~-ivv~~st~ 104 (303)
T 3g0o_A 71 LVVNAA------QVRQVLFGEDGVAHLMKPGS-AVMVSSTI 104 (303)
T ss_dssp CCSSHH------HHHHHHC--CCCGGGSCTTC-EEEECSCC
T ss_pred ECCCHH------HHHHHHhChhhHHhhCCCCC-EEEecCCC
Confidence 654321 122333 44556777755 45666543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.07 E-value=4.8 Score=33.31 Aligned_cols=73 Identities=10% Similarity=-0.039 Sum_probs=50.7
Q ss_pred CCCcEEEEcCcccH---HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGAGS---AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~---~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..+.+|+.|+++|. +++.|++ .+.+|..++.+++-++...+.+... ..++.++..|..+.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 81 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAE--QGADLVLAARTVERLEDVAKQVTDT------GRRALSVGTDITDDAQVAHLVDE 81 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHH--CcCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 46788999886653 2333433 4789999999998777665554211 35799999998874
Q ss_pred --ccCCCeeEEEEcC
Q 035593 145 --SLKDGFSGILVDL 157 (269)
Q Consensus 145 --~~~~~yD~I~~d~ 157 (269)
..-++.|+++.++
T Consensus 82 ~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 82 TMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHTSCCSEEEECC
T ss_pred HHHHcCCCcEEEECC
Confidence 1235789999876
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=88.01 E-value=3.8 Score=35.22 Aligned_cols=77 Identities=8% Similarity=-0.103 Sum_probs=50.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.||+.|+++| ++..+++.+ .+.+|.+++.+++-.+.+.+.+.... ...++.++..|..+.
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG----SGPEVMGVQLDVASREGFKMAADEV 81 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3568999997655 333333332 47899999999987776655442111 123799999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...+..|+++.++-
T Consensus 82 ~~~~g~id~lv~nAg 96 (319)
T 3ioy_A 82 EARFGPVSILCNNAG 96 (319)
T ss_dssp HHHTCCEEEEEECCC
T ss_pred HHhCCCCCEEEECCC
Confidence 12357899998764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=87.91 E-value=6 Score=33.35 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=46.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChH-HHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPS-VIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~-~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
.++||+.|+++| +++.+++++ .+.+|.+++.+++ ..+...+.... ...++.++..|..+.
T Consensus 47 gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~v~~~~~~~ 119 (291)
T 3ijr_A 47 GKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK------EGVKCVLLPGDLSDEQHCKDIVQET 119 (291)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT------TTCCEEEEESCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh------cCCcEEEEECCCCCHHHHHHHHHHH
Confidence 567888887654 444444432 4789999999865 33333333221 135789999998864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 120 ~~~~g~iD~lvnnAg 134 (291)
T 3ijr_A 120 VRQLGSLNILVNNVA 134 (291)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 12347899998753
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.88 E-value=3.2 Score=34.84 Aligned_cols=72 Identities=10% Similarity=0.003 Sum_probs=48.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.||+.|+++| +++.+++++ .+.+|.+++.+++-.+...+.++ .++.++..|..+.
T Consensus 28 ~gk~vlVTGas~g-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 28 AGKVAIVTGAGAG-IGLAVARRLADEGCHVLCADIDGDAADAAATKIG---------CGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp TTCEEEETTTTST-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC---------SSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC---------CcceEEEecCCCHHHHHHHHHHH
Confidence 3567888887655 333333322 47899999999987776655542 3578888998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++..+-
T Consensus 98 ~~~~g~iD~lvnnAg 112 (277)
T 3gvc_A 98 VAAFGGVDKLVANAG 112 (277)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 11247899998753
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.84 E-value=0.8 Score=39.90 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCcEEEEcCcc-cH-HHHHHHHHCCCceEEE-EECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 78 PGPIGILGFGA-GS-AARLILDLYPEAVIHG-WELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~-vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..||-.||||. |. ......+..|+.++++ +|.|++-.+...+.++.+ + ...|..+.......|+|+
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~--------~---~y~d~~ell~~~~iDaV~ 91 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVP--------H---AFGSYEEMLASDVIDAVY 91 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCS--------E---EESSHHHHHHCSSCSEEE
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC--------e---eeCCHHHHhcCCCCCEEE
Confidence 34899999985 32 1222334468888874 699998877766666532 1 235655554456789998
Q ss_pred EcCCCC
Q 035593 155 VDLFSK 160 (269)
Q Consensus 155 ~d~~~~ 160 (269)
+..+..
T Consensus 92 I~tP~~ 97 (350)
T 4had_A 92 IPLPTS 97 (350)
T ss_dssp ECSCGG
T ss_pred EeCCCc
Confidence 865443
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=87.69 E-value=2.1 Score=37.20 Aligned_cols=90 Identities=8% Similarity=-0.119 Sum_probs=54.2
Q ss_pred CCCcEEEEcCc---ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------cc
Q 035593 77 PPGPIGILGFG---AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SL 146 (269)
Q Consensus 77 ~~~~VL~iG~G---~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~ 146 (269)
+..+.+.|-+| .|..+..+++.. +++|++++.+++-.+.+++. +.. .++..+-.++ ..
T Consensus 163 ~g~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~~-Ga~----------~~~~~~~~~~~~~v~~~~~ 230 (349)
T 3pi7_A 163 EGEKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKDI-GAA----------HVLNEKAPDFEATLREVMK 230 (349)
T ss_dssp HCCSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHH-TCS----------EEEETTSTTHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCC----------EEEECCcHHHHHHHHHHhc
Confidence 34344445333 455555666643 67999999999988888764 321 1222111122 12
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+|+|+- +.. .+.++.+.+.|+++|.+++-
T Consensus 231 ~~g~D~vid-~~g----------~~~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 231 AEQPRIFLD-AVT----------GPLASAIFNAMPKRARWIIY 262 (349)
T ss_dssp HHCCCEEEE-SSC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCcEEEE-CCC----------ChhHHHHHhhhcCCCEEEEE
Confidence 347999984 321 23457788999999998874
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=87.66 E-value=4.8 Score=33.03 Aligned_cols=71 Identities=14% Similarity=-0.010 Sum_probs=49.4
Q ss_pred CCCcEEEEcCcccH---HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGAGS---AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~---~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..++||+.|+++|. +++.|++ .+.+|.+++.+++-++...+.++ .++.++..|..+.
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~ 76 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAK--GGAKVVIVDRDKAGAERVAGEIG---------DAALAVAADISKEADVDAAVEA 76 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHhC---------CceEEEEecCCCHHHHHHHHHH
Confidence 35788888876552 3344443 37899999999988776665442 4689999998764
Q ss_pred --ccCCCeeEEEEcCC
Q 035593 145 --SLKDGFSGILVDLF 158 (269)
Q Consensus 145 --~~~~~yD~I~~d~~ 158 (269)
...++.|+++.++-
T Consensus 77 ~~~~~g~id~li~~Ag 92 (261)
T 3n74_A 77 ALSKFGKVDILVNNAG 92 (261)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHhcCCCCEEEECCc
Confidence 11247899998764
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=87.55 E-value=1.4 Score=38.55 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=44.5
Q ss_pred CCcEEEEcCcc--cHHHHHHHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 78 PGPIGILGFGA--GSAARLILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~--G~~~~~l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..+|..||||. ...+..+.+..++.+++ ++|.+++-.+.+.+.++ +. ...|..+.......|+|+
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~-----------~~-~~~~~~~ll~~~~~D~V~ 80 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTG-----------AR-GHASLTDMLAQTDADIVI 80 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHC-----------CE-EESCHHHHHHHCCCSEEE
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcC-----------Cc-eeCCHHHHhcCCCCCEEE
Confidence 56899999993 34455555532678766 67999988777666554 21 234555543345788888
Q ss_pred EcCCC
Q 035593 155 VDLFS 159 (269)
Q Consensus 155 ~d~~~ 159 (269)
+....
T Consensus 81 i~tp~ 85 (354)
T 3q2i_A 81 LTTPS 85 (354)
T ss_dssp ECSCG
T ss_pred ECCCc
Confidence 75443
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.53 E-value=2.8 Score=34.31 Aligned_cols=75 Identities=7% Similarity=0.023 Sum_probs=50.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.||+.|+++| ++..+++++ .+.+|.+++.+++-.+...+.+... ..++.++..|..+.
T Consensus 8 ~~k~vlITGas~g-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T 3qiv_A 8 ENKVGIVTGSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD------GGTAISVAVDVSDPESAKAMADRT 80 (253)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4677888887544 444444332 3789999999998877665554211 35789999998874
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...++.|+++.++-
T Consensus 81 ~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 81 LAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 11247899998753
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.40 E-value=4.1 Score=33.15 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=48.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.++||+.|+++| +++.+++++ .+.+|.+++.+++-++...+.++ .++.++..|..+.
T Consensus 3 ~k~vlVTGas~G-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~ 72 (235)
T 3l6e_A 3 LGHIIVTGAGSG-LGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG---------NAVIGIVADLAHHEDVDVAFAAAV 72 (235)
T ss_dssp CCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---------CCceEEECCCCCHHHHHHHHHHHH
Confidence 356888887654 444444332 47899999999987776665542 2588999998764
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
...++.|+++..+-
T Consensus 73 ~~~g~id~lvnnAg 86 (235)
T 3l6e_A 73 EWGGLPELVLHCAG 86 (235)
T ss_dssp HHHCSCSEEEEECC
T ss_pred HhcCCCcEEEECCC
Confidence 12357899998754
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.37 E-value=0.75 Score=40.06 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=39.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECCh---HHHHHHHHhcC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDP---SVIKVAREFFA 122 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp---~~~~~a~~~~~ 122 (269)
.+...|||-=||+|+.+.++.+. +.+.+++|++| ..+++|++++.
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHH
Confidence 36788999999999999998885 78999999999 99999999874
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=2 Score=39.52 Aligned_cols=109 Identities=10% Similarity=-0.022 Sum_probs=61.6
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-c--ccccc-C----CCCcEEEEEccccccccC
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-L--EKLEK-S----YPDRLFVYVGNALKASLK 147 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~--~~~~~-~----~~~rv~~~~~D~~~~~~~ 147 (269)
..+|.+||+| ++.++..+++ .+.+|+++|++++.++..++.-. . +.... . ...++++. .|..+ .-
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~--~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~--a~ 82 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLAD--IGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEA--AV 82 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHH--HH
T ss_pred CceEEEECcCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHH--Hh
Confidence 4589999999 3344555555 36789999999999888776421 0 00000 0 01123321 22211 12
Q ss_pred CCeeEEEEcCCCCCC---CCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 148 DGFSGILVDLFSKGS---LLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~---~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
...|+||+....+.. .+..-...+.++.+...|+++-++ ++..+
T Consensus 83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iV-V~~ST 129 (478)
T 2y0c_A 83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVI-VDKST 129 (478)
T ss_dssp HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEE-EECSC
T ss_pred hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEE-EEeCC
Confidence 357999987655321 111123467788888889886554 55543
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=87.05 E-value=3.9 Score=37.70 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=60.6
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.+|..||+| +..++..|++ .+.+|++.|.+++.++...+.-. . ..++.. ..+..++ ..-+..|+|++
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~-~------g~~i~~-~~s~~e~v~~l~~aDvVil 74 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMND--HGFVVCAFNRTVSKVDDFLANEA-K------GTKVVG-AQSLKEMVSKLKKPRRIIL 74 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSTHHHHHHHHTTT-T------TSSCEE-CSSHHHHHHTBCSSCEEEE
T ss_pred CEEEEEChhHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHhccc-C------CCceec-cCCHHHHHhhccCCCEEEE
Confidence 579999998 4445555655 36799999999998877665411 0 112221 1233333 22246799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+... ....+.++.+...|++|- ++++..+.
T Consensus 75 ~Vp~~------~~v~~vl~~l~~~L~~g~-iIId~st~ 105 (484)
T 4gwg_A 75 LVKAG------QAVDDFIEKLVPLLDTGD-IIIDGGNS 105 (484)
T ss_dssp CSCSS------HHHHHHHHHHGGGCCTTC-EEEECSCC
T ss_pred ecCCh------HHHHHHHHHHHHhcCCCC-EEEEcCCC
Confidence 65432 124578888999998855 55666554
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.01 E-value=4.8 Score=33.62 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=48.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+++++ .+.+|.+++.++...+.+++.... ..++.++..|..+.
T Consensus 30 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~ 101 (273)
T 3uf0_A 30 AGRTAVVTGAGSG-IGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADG-------GGSAEAVVADLADLEGAANVAEEL 101 (273)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTT-------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhc-------CCcEEEEEecCCCHHHHHHHHHHH
Confidence 4678888887655 443333332 478999999776655555443221 35789999998865
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
...++.|+++.++-
T Consensus 102 ~~~g~iD~lv~nAg 115 (273)
T 3uf0_A 102 AATRRVDVLVNNAG 115 (273)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HhcCCCcEEEECCC
Confidence 11257899998754
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=86.92 E-value=0.73 Score=41.32 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=35.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-------CCceEEEEECChHHHHHHHHhc
Q 035593 78 PGPIGILGFGAGSAARLILDLY-------PEAVIHGWELDPSVIKVAREFF 121 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-------p~~~v~~vEidp~~~~~a~~~~ 121 (269)
+-.|+++|.|.|.++.-+++.. ...++..||+||...+.=++.+
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 4579999999999998887642 2458999999999987666554
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=86.90 E-value=3.6 Score=33.77 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=49.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+.+.+ .+.+|.+++.+++-.+...+.++ .++.++..|..+.
T Consensus 5 ~gk~vlVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~ 74 (247)
T 3rwb_A 5 AGKTALVTGAAQG-IGKAIAARLAADGATVIVSDINAEGAKAAAASIG---------KKARAIAADISDPGSVKALFAEI 74 (247)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---------TTEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CceEEEEcCCCCHHHHHHHHHHH
Confidence 3567888887654 444443332 47899999999987776655542 4688888998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...++.|+++.++-
T Consensus 75 ~~~~g~id~lv~nAg 89 (247)
T 3rwb_A 75 QALTGGIDILVNNAS 89 (247)
T ss_dssp HHHHSCCSEEEECCC
T ss_pred HHHCCCCCEEEECCC
Confidence 11247899998754
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=86.80 E-value=4.3 Score=33.91 Aligned_cols=76 Identities=11% Similarity=-0.085 Sum_probs=49.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+++++ .+.+|.+++.+++-.+.+.+.+.... ..++.++..|..+.
T Consensus 26 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~ 99 (277)
T 4fc7_A 26 RDKVAFITGGGSG-IGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-----GRRCLPLSMDVRAPPAVMAAVDQA 99 (277)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4678888887654 444444432 47899999999876655544332111 35789999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 100 ~~~~g~id~lv~nAg 114 (277)
T 4fc7_A 100 LKEFGRIDILINCAA 114 (277)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCc
Confidence 12257899998764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=6.1 Score=32.30 Aligned_cols=75 Identities=8% Similarity=-0.022 Sum_probs=48.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+.+.+ .+.+|.+++.+++-++...+.+... ..++.++..|..+.
T Consensus 6 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~~~~~~~~~~~ 78 (247)
T 2jah_A 6 QGKVALITGASSG-IGEATARALAAEGAAVAIAARRVEKLRALGDELTAA------GAKVHVLELDVADRQGVDAAVAST 78 (247)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHHH
Confidence 3567888886544 444444332 3789999999987766554443211 24688999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 79 ~~~~g~id~lv~nAg 93 (247)
T 2jah_A 79 VEALGGLDILVNNAG 93 (247)
T ss_dssp HHHHSCCSEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 01247899998753
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=86.68 E-value=2.7 Score=35.26 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=49.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+++|+.|+++| +++.+++++ .+.+|.+++.+++-.+...+.+... ..++.++..|..+.
T Consensus 31 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~d~~~v~~~~~~~ 103 (276)
T 3r1i_A 31 SGKRALITGASTG-IGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV------GGKALPIRCDVTQPDQVRGMLDQM 103 (276)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4678888887654 444443332 3789999999987766655544211 35788899998864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 104 ~~~~g~iD~lvnnAg 118 (276)
T 3r1i_A 104 TGELGGIDIAVCNAG 118 (276)
T ss_dssp HHHHSCCSEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 11247999998754
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.57 E-value=4.2 Score=35.02 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=51.8
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCC-ceEEEEECCh-------HHHHHHHHhcCccccccCCCCcEEEEEc-cccccccC
Q 035593 79 GPIGILGFG--AGSAARLILDLYPE-AVIHGWELDP-------SVIKVAREFFALEKLEKSYPDRLFVYVG-NALKASLK 147 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~-~~v~~vEidp-------~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~~~~ 147 (269)
.+|..||+| +..++..|++ .+ .+|+++|.++ +..+.+.+. .+ .. +..+. -
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~--~G~~~V~~~dr~~~~~~~~~~~~~~~~~~------------g~---~~~s~~e~--~ 85 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGG--RNAARLAAYDLRFNDPAASGALRARAAEL------------GV---EPLDDVAG--I 85 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHT--TTCSEEEEECGGGGCTTTHHHHHHHHHHT------------TC---EEESSGGG--G
T ss_pred CeEEEECccHHHHHHHHHHHH--cCCCeEEEEeCCCccccchHHHHHHHHHC------------CC---CCCCHHHH--H
Confidence 479999988 3344455554 35 7999999998 333332221 12 22 22222 2
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...|+|++.+.... ..+.++.+...|+++. ++++..+.
T Consensus 86 ~~aDvVi~avp~~~-------~~~~~~~i~~~l~~~~-ivv~~st~ 123 (317)
T 4ezb_A 86 ACADVVLSLVVGAA-------TKAVAASAAPHLSDEA-VFIDLNSV 123 (317)
T ss_dssp GGCSEEEECCCGGG-------HHHHHHHHGGGCCTTC-EEEECCSC
T ss_pred hcCCEEEEecCCHH-------HHHHHHHHHhhcCCCC-EEEECCCC
Confidence 35799998654321 2455678888888865 45565443
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=86.41 E-value=4 Score=35.53 Aligned_cols=70 Identities=6% Similarity=0.009 Sum_probs=42.2
Q ss_pred CCcEEEEcCccc--HHHHHHHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 78 PGPIGILGFGAG--SAARLILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G--~~~~~l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+|..||||.- ..+..+. ..|+.+++ ++|.+++..+...+.++.+ . ..|..+.......|+|+
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~-~~~~~~lvav~d~~~~~~~~~~~~~g~~-----------~-~~~~~~~l~~~~~D~V~ 71 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYT-KSEKLKLVTCYSRTEDKREKFGKRYNCA-----------G-DATMEALLAREDVEMVI 71 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHT-TCSSEEEEEEECSSHHHHHHHHHHHTCC-----------C-CSSHHHHHHCSSCCEEE
T ss_pred cceEEEEccCHHHHHHHHHHH-hCCCcEEEEEECCCHHHHHHHHHHcCCC-----------C-cCCHHHHhcCCCCCEEE
Confidence 458999999842 2223332 24677766 5699998877665555432 1 23444443345788888
Q ss_pred EcCCCC
Q 035593 155 VDLFSK 160 (269)
Q Consensus 155 ~d~~~~ 160 (269)
+.....
T Consensus 72 i~tp~~ 77 (354)
T 3db2_A 72 ITVPND 77 (354)
T ss_dssp ECSCTT
T ss_pred EeCChH
Confidence 765443
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=86.33 E-value=7.4 Score=31.88 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=49.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc--ccc--------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA--LKA-------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~--~~~-------- 144 (269)
..+.||+.|+++| ++..+++++ .+.+|.+++.+++-++...+.+.... ..++.++..|. .+.
T Consensus 11 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 11 NDRIILVTGASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-----GRQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCCceEEEEecccCCHHHHHHHHH
Confidence 4678888887654 444444332 47899999999987766555442111 23678888888 432
Q ss_pred ---ccCCCeeEEEEcCC
Q 035593 145 ---SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ---~~~~~yD~I~~d~~ 158 (269)
...++.|+++.++-
T Consensus 85 ~~~~~~g~id~lv~nAg 101 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAG 101 (252)
T ss_dssp HHHHHCSCCSEEEECCC
T ss_pred HHHHhCCCCCEEEECCc
Confidence 12357999998764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.25 E-value=2.2 Score=37.55 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=58.5
Q ss_pred CCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC----ccccccCCCCcEEEEEccccccccCCCee
Q 035593 78 PGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFA----LEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~----~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
..+|..||+|. +.++..|++ .+.+|+.++.+++.++..++.-. ++... ..+++++. .|..+ .-...|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~--~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~--l~~~i~~t-~d~~e--a~~~aD 101 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLAR--KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYP--FPETLKAY-CDLKA--SLEGVT 101 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHT--TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCC--CCTTEEEE-SCHHH--HHTTCC
T ss_pred CCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCc--cCCCeEEE-CCHHH--HHhcCC
Confidence 45899999983 344445544 35689999999998877665421 11100 01233322 22221 124689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|++..... ...+.++.+...|+++-++ +++.
T Consensus 102 vVilaVp~~-------~~~~vl~~i~~~l~~~~iv-vs~~ 133 (356)
T 3k96_A 102 DILIVVPSF-------AFHEVITRMKPLIDAKTRI-AWGT 133 (356)
T ss_dssp EEEECCCHH-------HHHHHHHHHGGGCCTTCEE-EECC
T ss_pred EEEECCCHH-------HHHHHHHHHHHhcCCCCEE-EEEe
Confidence 999854321 2568888888888886654 4443
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=86.18 E-value=2.6 Score=36.51 Aligned_cols=69 Identities=16% Similarity=0.042 Sum_probs=42.9
Q ss_pred CCcEEEEcCcc--cHHHHHHHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 78 PGPIGILGFGA--GSAARLILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~--G~~~~~l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..+|..||||. ...+..+.+ .|+.+++ ++|.+++..+...+.++ +. ...|..+.......|+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~-~~~~~l~av~d~~~~~~~~~a~~~g-----------~~-~~~~~~~~l~~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAA-NPDLELVVIADPFIEGAQRLAEANG-----------AE-AVASPDEVFARDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH-CTTEEEEEEECSSHHHHHHHHHTTT-----------CE-EESSHHHHTTCSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHh-CCCcEEEEEECCCHHHHHHHHHHcC-----------Cc-eeCCHHHHhcCCCCCEEE
Confidence 34899999984 233344443 5788877 68999988776555443 12 124544444445788888
Q ss_pred EcCCC
Q 035593 155 VDLFS 159 (269)
Q Consensus 155 ~d~~~ 159 (269)
+....
T Consensus 71 i~tp~ 75 (344)
T 3euw_A 71 IGSPT 75 (344)
T ss_dssp ECSCG
T ss_pred EeCCc
Confidence 75543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.02 E-value=6.1 Score=33.41 Aligned_cols=72 Identities=10% Similarity=-0.035 Sum_probs=50.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++.+ .+++|..++.+++.++.+.+.++ .++..+..|..+.
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g---------~~~~~~~~Dv~~~~~v~~~~~~~ 97 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG---------GGAVGIQADSANLAELDRLYEKV 97 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CCeEEEEecCCCHHHHHHHHHHH
Confidence 5677787787655 444444433 48899999999998887766553 3567788898764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 98 ~~~~G~iDiLVNNAG 112 (273)
T 4fgs_A 98 KAEAGRIDVLFVNAG 112 (273)
T ss_dssp HHHHSCEEEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 12467899998764
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.98 E-value=6.5 Score=32.24 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=47.0
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------c
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----------S 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----------~ 145 (269)
+.+|+.|+++| +++.+.+++ .+.+|.+++.+++-.+...+.+... ..++.++..|..+. .
T Consensus 3 k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~ 75 (256)
T 1geg_A 3 KVALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------GGHAVAVKVDVSDRDQVFAAVEQARK 75 (256)
T ss_dssp CEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 56888886544 444444432 3789999999987665544433211 24688899998764 1
Q ss_pred cCCCeeEEEEcCC
Q 035593 146 LKDGFSGILVDLF 158 (269)
Q Consensus 146 ~~~~yD~I~~d~~ 158 (269)
.-++.|+++..+-
T Consensus 76 ~~g~id~lv~nAg 88 (256)
T 1geg_A 76 TLGGFDVIVNNAG 88 (256)
T ss_dssp HTTCCCEEEECCC
T ss_pred HhCCCCEEEECCC
Confidence 1247999998753
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=85.90 E-value=9.6 Score=32.41 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=24.4
Q ss_pred CCcEEEEcCcc--cHHHHHHHHHCCCc--eEEEEECChHHHH
Q 035593 78 PGPIGILGFGA--GSAARLILDLYPEA--VIHGWELDPSVIK 115 (269)
Q Consensus 78 ~~~VL~iG~G~--G~~~~~l~~~~p~~--~v~~vEidp~~~~ 115 (269)
+.+|.+||+|. +.++..|++ .+. +|+.+|++++.++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~~~~~~ 46 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIAKERVE 46 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCChhHHH
Confidence 45899999973 233334433 244 8999999987665
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=0.65 Score=41.13 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=27.3
Q ss_pred CCcEEEEcCcccHHHH--HHHHHCCCceEEEEECCh
Q 035593 78 PGPIGILGFGAGSAAR--LILDLYPEAVIHGWELDP 111 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~--~l~~~~p~~~v~~vEidp 111 (269)
.+||++||+|.+.++. .|++..++.+|+.||.++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~ 37 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE 37 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence 5799999999876654 466666788999999875
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=85.71 E-value=4.5 Score=33.16 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=48.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| +++.+++++ .+.+|.+++.+++-.+...+.++ .+...+..|..+.
T Consensus 8 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~~ 77 (248)
T 3op4_A 8 EGKVALVTGASRG-IGKAIAELLAERGAKVIGTATSESGAQAISDYLG---------DNGKGMALNVTNPESIEAVLKAI 77 (248)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------ccceEEEEeCCCHHHHHHHHHHH
Confidence 4567888876644 444444332 47899999999988776665543 2467888888764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 78 ~~~~g~iD~lv~nAg 92 (248)
T 3op4_A 78 TDEFGGVDILVNNAG 92 (248)
T ss_dssp HHHHCCCSEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 11247899998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 269 | ||||
| d1mjfa_ | 276 | c.66.1.17 (A:) Putative spermidine synthetase PF01 | 1e-18 | |
| d1xj5a_ | 290 | c.66.1.17 (A:) Spermidine synthase {Thale cress (A | 2e-15 | |
| d1iy9a_ | 274 | c.66.1.17 (A:) Spermidine synthase {Bacillus subti | 5e-15 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 5e-12 | |
| d1uira_ | 312 | c.66.1.17 (A:) Spermidine synthase {Thermus thermo | 7e-12 | |
| d2b2ca1 | 312 | c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab | 1e-11 | |
| d1inla_ | 295 | c.66.1.17 (A:) Spermidine synthase {Thermotoga mar | 1e-10 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.002 |
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 81.4 bits (200), Expect = 1e-18
Identities = 54/269 (20%), Positives = 95/269 (35%), Gaps = 28/269 (10%)
Query: 1 TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS 60
+ GV K I + S+Y I V + G RLL LDG + ++ RS
Sbjct: 7 PRGYGVAFKIKKKIYEKLSKYQKIEV------YETEGFG-RLLALDG--TVQLVTLGERS 57
Query: 61 LTNTYFDAFATLPPILPPGPIGIL--GFGAGSAARLILDLYPEAVIHGWELDPSVIKVAR 118
Y + + P P +L G G G R +L + VI E+D VI V++
Sbjct: 58 ----YHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIM-VEIDEDVIMVSK 112
Query: 119 EFF-----ALEKLEKSYPDRLFVYVGNALK-ASLKDGFSGILVDLFSKGSLLSELEDPNT 172
+ LE + ++ + +G+ + GF I+ D L
Sbjct: 113 DLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEF 172
Query: 173 WEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRK 232
+ + L G + G + ++ K + + + + F Y
Sbjct: 173 YRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWA--- 229
Query: 233 DDSLIALTGELPDLD-DWKRALPRSLKFY 260
L+ + G++ D +RA L++Y
Sbjct: 230 --FLVGVKGDIDFTKIDRERAKKLQLEYY 256
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.2 bits (176), Expect = 2e-15
Identities = 46/259 (17%), Positives = 93/259 (35%), Gaps = 24/259 (9%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFAT 71
K++ + +S Y + V + G ++L+LDG + Y +
Sbjct: 26 KVLFQGKSDYQDVIVFQ------SATYG-KVLVLDGVIQLTE------RDECAYQEMITH 72
Query: 72 LPPILPPGP--IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKS 129
LP P P + ++G G G R + I E+D V+ V+++FF +
Sbjct: 73 LPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE 132
Query: 130 YPDRLFVYVGNA---LKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRI 186
P R+ + +G+ LK + + + ++VD EL + ++ + + LR GG +
Sbjct: 133 DP-RVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVV 191
Query: 187 MVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS-----LGNRKDDSLIALTG 241
+ + E +++ + S + + +
Sbjct: 192 CTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKH 251
Query: 242 ELPDLDDWKRALPRSLKFY 260
L +D+ LKFY
Sbjct: 252 PLNPIDESSSKSNGPLKFY 270
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Score = 71.0 bits (173), Expect = 5e-15
Identities = 40/253 (15%), Positives = 79/253 (31%), Gaps = 22/253 (8%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFAT 71
K + ++ + ++ ++E +L LDG Y + A
Sbjct: 21 KTLHTEQTEFQHLEMVETEE-------FGNMLFLDGMVMTSE------KDEFVYHEMVAH 67
Query: 72 LPPILPPGP--IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKS 129
+P P P + ++G G G R IL ++D VI+ +++F +
Sbjct: 68 VPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD 127
Query: 130 YPDRLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187
P R+ V V + A ++ + I+VD L + + + L++ G +
Sbjct: 128 DP-RVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFV 186
Query: 188 VNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTGELPDLD 247
E + V E + + + I P
Sbjct: 187 AQTDNPWFTPELITNVQRDVKEIFPITKLYTA----NIPTYPSGLWTFTIGSKKYDPLAV 242
Query: 248 DWKRALPRSLKFY 260
+ R K+Y
Sbjct: 243 EDSRFFDIETKYY 255
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 5e-12
Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 14/181 (7%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFAT 71
+++ RSRY I V +L+LD G I S +
Sbjct: 24 QLLHHRRSRYQDILVFRSKT-------YGNVLVLD--GVIQCTERDEFSYQEMIANLPLC 74
Query: 72 LPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYP 131
P P + I+G G G R ++ + E+D VI+V+++F + S
Sbjct: 75 SHP--NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS 132
Query: 132 DRLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189
+L ++VG+ + +D F I+ D L + ++ ++ L++ G +
Sbjct: 133 -KLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191
Query: 190 V 190
Sbjct: 192 G 192
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Score = 62.1 bits (150), Expect = 7e-12
Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 20/187 (10%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFAT 71
++IA ++ + + E G ++L+LD Y +
Sbjct: 23 RVIASGKTPFQDYFLFE------SKGFG-KVLILDKDVQSTE------RDEYIYHETLVH 69
Query: 72 LPPILPPGP--IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKS 129
+ P P + I+G G G+ R +L ++D +++VA+
Sbjct: 70 PAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF 129
Query: 130 YPDRLFVYVGNALK--ASLKDGFSGILVDL---FSKGSLLSELEDPNTWEKLRQCLRKGG 184
R + + +A ++ + +++DL + + L + ++ L GG
Sbjct: 130 DDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGG 189
Query: 185 RIMVNVG 191
+ + G
Sbjct: 190 VMGMQTG 196
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Score = 61.3 bits (148), Expect = 1e-11
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFAT 71
K++ +S+Y + V E + +L+LDG + F Y + A
Sbjct: 52 KVLFHEKSKYQDVLVFESTTY-------GNVLVLDGIVQA-TERDEFS-----YQEMLAH 98
Query: 72 LPPILPPGP--IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKS 129
LP P P + I+G G G R +L + E+D VI VA++F S
Sbjct: 99 LPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS 158
Query: 130 YPDRLFVYVGNALK--ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187
+P +L ++ G+ + + K+ F I+ D L + +E LR L++ G +
Sbjct: 159 HP-KLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILS 217
Query: 188 VNVG 191
Sbjct: 218 SQGE 221
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Score = 58.6 bits (141), Expect = 1e-10
Identities = 38/261 (14%), Positives = 83/261 (31%), Gaps = 34/261 (13%)
Query: 12 KIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFAT 71
++I +S I + E +P G + LDG + +
Sbjct: 35 RVIYSGQSDIQRIDIFE------NPDLG-VVFALDG-------ITMTTEKDEFMYHEMLA 80
Query: 72 LPPIL---PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEK 128
P+ P + I+G G G R +L E+D VI+ AR++
Sbjct: 81 HVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQT--SC 138
Query: 129 SYPD-RLFVYVGNALK--ASLKDGFSGILVDLF-SKGSLLSELEDPNTWEKLRQCLRKGG 184
+ D R + + N + K+ F I++D L ++ L++ G
Sbjct: 139 GFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDG 198
Query: 185 RIMVNVGGSCVEAEDSRRDGKVVMEATLKAM-----HKVFGKKLYVLSLGNRKDDSLIAL 239
+ + + + + + ++ + ++ D +
Sbjct: 199 VFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGIDPI--- 255
Query: 240 TGELPDLDDWKRALPRSLKFY 260
+ D + ++ + LK+Y
Sbjct: 256 --KDFDPEKVRK-FNKELKYY 273
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.6 bits (84), Expect = 0.002
Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 8/111 (7%)
Query: 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE------KSYPDRLFVY 137
LG G G+ A+ G E+ + + K + +
Sbjct: 223 LGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282
Query: 138 VGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188
+ + V L + +L EK+ Q + G +I+
Sbjct: 283 KSFVDNNRVAELIPQCDVILVNNFLFDEDLNK--KVEKILQTAKVGCKIIS 331
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 100.0 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 100.0 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 100.0 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 100.0 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 100.0 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.98 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.68 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.67 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.65 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.64 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.64 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.63 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.62 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.62 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.62 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.61 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.6 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.59 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.57 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.57 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.57 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.56 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.55 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.55 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.55 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.55 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.53 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.53 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.52 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.52 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.52 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.51 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.5 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.5 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.49 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.49 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.48 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.48 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.48 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.44 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.44 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.43 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.41 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.4 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.39 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.37 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.37 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.37 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.37 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.36 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.36 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.35 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.34 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.34 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.32 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.32 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.28 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.28 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.25 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.18 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.18 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.17 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.17 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.12 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.08 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.07 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.04 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.02 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.92 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.86 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.85 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.83 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.78 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.71 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.7 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.65 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.64 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.64 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.61 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.59 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.56 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.53 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.52 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.49 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.45 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.39 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.38 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.3 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.29 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.28 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.28 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.16 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.79 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.71 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.68 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.68 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.63 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.59 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.59 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.57 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.57 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.56 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.53 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.5 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.49 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.45 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.25 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.19 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.18 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.17 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.16 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.09 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.97 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.86 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.84 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.77 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.72 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.64 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.62 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.56 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.53 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.41 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.32 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.01 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.64 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.45 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.18 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.18 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.94 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.32 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.22 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 94.21 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.97 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 93.96 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.63 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 93.4 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.99 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 92.74 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 92.67 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.48 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.25 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 92.13 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 91.86 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 91.81 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 91.8 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.78 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.69 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 91.33 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.31 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 91.11 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 90.96 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.75 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 90.63 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.55 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.5 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.46 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.44 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.42 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 90.42 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.33 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.32 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.23 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.14 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 89.91 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 89.75 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 89.73 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 89.51 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.44 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 89.39 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 89.32 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 89.07 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 88.67 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 88.43 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 88.34 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 88.32 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.31 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.04 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 87.71 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 87.27 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.06 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 86.99 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 86.61 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 86.57 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.39 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.26 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 86.14 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 86.13 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 86.13 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 85.94 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 85.87 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 85.54 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 85.38 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.13 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 85.05 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 85.03 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 84.35 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 84.3 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 84.17 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 84.13 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 84.06 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.04 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 83.95 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.42 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 83.22 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 83.06 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 82.85 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 82.75 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 82.62 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 82.57 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 82.42 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 82.03 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 81.95 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 81.57 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 81.18 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 81.16 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 81.08 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.96 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.95 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 80.84 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 80.43 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 80.33 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.22 |
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.3e-33 Score=242.91 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=172.0
Q ss_pred CCCCCCCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCc
Q 035593 3 DDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGP 80 (269)
Q Consensus 3 ~~~~~~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~ 80 (269)
++|...+-.++|++.+|+||.|.|+|+.. + +|+|++|+ .+|+.. ..+..||+.|++.|. ..++++
T Consensus 9 ~~~~~~~~~~~l~~~~S~yq~I~v~~~~~-----~--gr~L~Ldg--~~q~~~----~de~~Yhe~l~~~~l~~~~~p~~ 75 (276)
T d1mjfa_ 9 GYGVAFKIKKKIYEKLSKYQKIEVYETEG-----F--GRLLALDG--TVQLVT----LGERSYHEPLVHPAMLAHPKPKR 75 (276)
T ss_dssp GEEEEECEEEEEEEEECSSCEEEEEEESS-----S--CEEEEETT--EEEEET----TTTHHHHHHHHHHHHHHSSCCCE
T ss_pred CceEEEEEeeEEEEecCCCeEEEEEEeCC-----C--CeEEEECC--ceeeec----cchhHHHHHhhcchhhcCCCCce
Confidence 44556667789999999999999999864 3 69999998 789764 346789999876543 335899
Q ss_pred EEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc-----ccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 81 IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL-----EKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~-----~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
||+||+|+|..+++++++ +..+|++|||||+|+++|+++|..... ....++|++++++|++.+ ...++||+|+
T Consensus 76 vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi 154 (276)
T d1mjfa_ 76 VLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVII 154 (276)
T ss_dssp EEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEEEE
T ss_pred EEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCEEE
Confidence 999999999999999874 667999999999999999999975421 112479999999999998 5668899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE--cCCC-
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS--LGNR- 231 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~--~~~~- 231 (269)
+|++++.+.+..|++.+||+.++++|+|+|++++|..++.. . ...+..++++|+++|+ +++.+. ++..
T Consensus 155 ~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~-------~-~~~~~~~~~tl~~~F~-~v~~y~~~vP~y~ 225 (276)
T d1mjfa_ 155 ADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYL-------F-TDELISAYKEMKKVFD-RVYYYSFPVIGYA 225 (276)
T ss_dssp EECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTT-------S-HHHHHHHHHHHHHHCS-EEEEEEECCTTSS
T ss_pred EeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcch-------h-HHHHHHHHHHHHhhCC-eeEEEEecCcCCC
Confidence 99999876677899999999999999999999999876643 1 3457789999999997 666553 3332
Q ss_pred Cc-eEEEEecCCCC
Q 035593 232 KD-DSLIALTGELP 244 (269)
Q Consensus 232 ~n-~v~~~~~~~~~ 244 (269)
++ ..++|++++.+
T Consensus 226 ~~w~f~~as~~~~~ 239 (276)
T d1mjfa_ 226 SPWAFLVGVKGDID 239 (276)
T ss_dssp SSEEEEEEEESSCC
T ss_pred CceEEEEEeCCCCC
Confidence 23 44777776653
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.8e-33 Score=243.13 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=172.2
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~iG 85 (269)
..-.++|++.+|+||+|.|+++.. + +|+|++|+ .+|+.. ..+..|++.|++.|.+ .++++||.||
T Consensus 17 ~~i~~~l~~~~s~yQ~I~v~~~~~-----~--g~~L~LDg--~~q~~~----~de~~Yhe~l~h~~l~~~~~p~~vLiiG 83 (274)
T d1iy9a_ 17 MKVNKTLHTEQTEFQHLEMVETEE-----F--GNMLFLDG--MVMTSE----KDEFVYHEMVAHVPLFTHPNPEHVLVVG 83 (274)
T ss_dssp EEEEEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred EEEeeEEEeCcCCCcEEEEEEcCC-----c--CeEEEECC--ceeeec----CchhhchhhhccchhhccCCcceEEecC
Confidence 344689999999999999999975 3 79999999 788764 3467799988765543 3589999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSL 163 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~ 163 (269)
+|+|..+++++++.+..+|++|||||+|+++|+++|.... +..+++|++++.+|++.+ ..+++||+|++|++++...
T Consensus 84 gG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~-~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~ 162 (274)
T d1iy9a_ 84 GGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA-GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGP 162 (274)
T ss_dssp CTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH-TTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSC
T ss_pred CCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc-ccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCc
Confidence 9999999999986567799999999999999999985322 233589999999999998 5677899999999998777
Q ss_pred CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCCC--Cc-eEEEE
Q 035593 164 LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGNR--KD-DSLIA 238 (269)
Q Consensus 164 ~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~~--~n-~v~~~ 238 (269)
+.+|++.+||+.++++|+|+|++++|..++.. + ...+..+.++++++|+ ++..+ .++.. +. ..++|
T Consensus 163 ~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~-------~-~~~~~~i~~tl~~~F~-~v~~y~~~vPsy~~g~w~f~~a 233 (274)
T d1iy9a_ 163 AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF-------T-PELITNVQRDVKEIFP-ITKLYTANIPTYPSGLWTFTIG 233 (274)
T ss_dssp CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTT-------C-HHHHHHHHHHHHTTCS-EEEEEEECCTTSGGGCEEEEEE
T ss_pred chhhccHHHHHHHHhhcCCCceEEEecCCccc-------c-HHHHHHHHHhhhhhcC-ceEEEEEEeeecCCCceEEEEE
Confidence 77899999999999999999999999876643 1 4567899999999998 44433 34432 33 44667
Q ss_pred ecCCC
Q 035593 239 LTGEL 243 (269)
Q Consensus 239 ~~~~~ 243 (269)
+++..
T Consensus 234 S~~~~ 238 (274)
T d1iy9a_ 234 SKKYD 238 (274)
T ss_dssp ESSCC
T ss_pred cCCCC
Confidence 76643
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-33 Score=242.20 Aligned_cols=211 Identities=18% Similarity=0.252 Sum_probs=163.1
Q ss_pred CccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEEcCc
Q 035593 10 DVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGILGFG 87 (269)
Q Consensus 10 ~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~iG~G 87 (269)
-.++|++++|+||+|.|++++. + +|+|++|+ .+|+.. ..+..|++.|++.|.+ ..|++||+||+|
T Consensus 22 ~~~~l~~~~S~yQ~I~v~~~~~-----~--g~~L~lDg--~~q~~~----~de~~Yhe~l~h~~l~~~~~pk~vLiiGgG 88 (285)
T d2o07a1 22 VEQLLHHRRSRYQDILVFRSKT-----Y--GNVLVLDG--VIQCTE----RDEFSYQEMIANLPLCSHPNPRKVLIIGGG 88 (285)
T ss_dssp EEEEEEEEECSSSEEEEEEESS-----S--CEEEEETT--EEEEET----TTHHHHHHHHHHHHHTTSSSCCEEEEEECT
T ss_pred EeeEEEeCCCCCcEEEEEEeCC-----C--CeEEEECC--cEEEec----CCHHHHHHHhccHhhhhCcCcCeEEEeCCC
Confidence 3589999999999999999975 3 69999998 788775 3457899988766543 358999999999
Q ss_pred ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCC
Q 035593 88 AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLS 165 (269)
Q Consensus 88 ~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~ 165 (269)
+|..+++++++.+..+|++|||||+|+++|+++|.... ....++|++++++||+.+ ...++||+|++|++++...+.
T Consensus 89 ~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~ 167 (285)
T d2o07a1 89 DGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-IGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAE 167 (285)
T ss_dssp TSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-------
T ss_pred chHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc-cccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCccc
Confidence 99999999986567899999999999999999984321 123479999999999999 567799999999998876677
Q ss_pred CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEE--EEcCCC--Cc-eEEEEec
Q 035593 166 ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYV--LSLGNR--KD-DSLIALT 240 (269)
Q Consensus 166 ~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~--~~~~~~--~n-~v~~~~~ 240 (269)
.|++.+||+.++++|+|||++++|..++.. + ...+..+.++++++|+ ++.. ..++.. ++ ..++|++
T Consensus 168 ~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~-------~-~~~~~~~~~tl~~~F~-~v~~y~~~vP~~~~g~w~f~~aSk 238 (285)
T d2o07a1 168 SLFKESYYQLMKTALKEDGVLCCQGECQWL-------H-LDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLCSK 238 (285)
T ss_dssp ----CHHHHHHHHHEEEEEEEEEEEECTTT-------C-HHHHHHHHHHHHHHCS-EEEEEEEECTTSGGGEEEEEEEES
T ss_pred ccccHHHHHHHHHhcCCCCeEEEeccchhh-------h-HHHHHHHHHHHHhcCC-eeeEEeeeeeecCCCCeEEEEEEC
Confidence 899999999999999999999999987643 1 4568889999999997 4443 344443 33 3578888
Q ss_pred CCC
Q 035593 241 GEL 243 (269)
Q Consensus 241 ~~~ 243 (269)
+|.
T Consensus 239 ~p~ 241 (285)
T d2o07a1 239 NPS 241 (285)
T ss_dssp STT
T ss_pred Ccc
Confidence 764
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-32 Score=239.54 Aligned_cols=215 Identities=19% Similarity=0.171 Sum_probs=168.0
Q ss_pred CCCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEE
Q 035593 7 PADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGIL 84 (269)
Q Consensus 7 ~~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~i 84 (269)
...-.++|++.+|+||+|.|++++. | +|+|++|+ .+|... .-+..||+.|++.|.+ ..|++||+|
T Consensus 30 ~~~v~~~l~~~~S~yQ~i~i~~s~~-----~--G~~l~LDg--~~q~~~----~De~~YhE~l~h~pl~~~~~pk~VLii 96 (295)
T d1inla_ 30 FMKMNRVIYSGQSDIQRIDIFENPD-----L--GVVFALDG--ITMTTE----KDEFMYHEMLAHVPMFLHPNPKKVLII 96 (295)
T ss_dssp EEECSEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred EEEEEEEEEecCCCCcEEEEEEcCC-----c--ceEEEECC--EEEEec----CchhhhhhhhcchhHhhCCCCceEEEe
Confidence 3455789999999999999999975 4 79999999 788764 3467899988766543 348999999
Q ss_pred cCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCC
Q 035593 85 GFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGS 162 (269)
Q Consensus 85 G~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~ 162 (269)
|+|+|.++++++++.+..+|++|||||+|+++|+++|.... ....++|++++++||+.+ ...++||+|++|++++..
T Consensus 97 GgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~ 175 (295)
T d1inla_ 97 GGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTA 175 (295)
T ss_dssp ECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----
T ss_pred cCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-ccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCc
Confidence 99999999999997667899999999999999999986432 123479999999999998 567789999999998753
Q ss_pred C-CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEE--EEcCCC--Cc-eEE
Q 035593 163 L-LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYV--LSLGNR--KD-DSL 236 (269)
Q Consensus 163 ~-~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~--~~~~~~--~n-~v~ 236 (269)
. +..|++.+||+.++++|+|+|++++|..++.. + ...+..+.++++++|+ .+.. ..++.. +. ..+
T Consensus 176 ~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~-------~-~~~~~~i~~tl~~vF~-~v~~y~~~vPtyp~G~w~f~ 246 (295)
T d1inla_ 176 GQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY-------D-IGWFKLAYRRISKVFP-ITRVYLGFMTTYPSGMWSYT 246 (295)
T ss_dssp -----CCSHHHHHHHHHHEEEEEEEEEECCCTTT-------T-HHHHHHHHHHHHHHCS-EEEEEEEECTTSTTSEEEEE
T ss_pred CchhhhccHHHHHHHHhhcCCCcEEEEecCChhh-------h-hHHHHHHHHHHHhhcc-eeEEEEeeeceecCcccEEE
Confidence 3 45799999999999999999999999987643 2 4568899999999997 4433 344443 34 457
Q ss_pred EEecCCCC
Q 035593 237 IALTGELP 244 (269)
Q Consensus 237 ~~~~~~~~ 244 (269)
+|++++.+
T Consensus 247 ~aSk~~~p 254 (295)
T d1inla_ 247 FASKGIDP 254 (295)
T ss_dssp EEESSCCT
T ss_pred EEeCCCCc
Confidence 78876543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.9e-32 Score=237.18 Aligned_cols=211 Identities=18% Similarity=0.273 Sum_probs=169.9
Q ss_pred CccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEcCc
Q 035593 10 DVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILGFG 87 (269)
Q Consensus 10 ~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG~G 87 (269)
-.++|++++|+||.|.|++++. + +|+|++|+ .+|+.. ..++.|++.|++.|.+. .|++||.||+|
T Consensus 24 v~~~l~~~~S~yQ~i~v~~~~~-----~--gr~L~LDg--~~q~~e----~de~~Yhe~l~h~~~~~~~~pk~VLiiGgG 90 (290)
T d1xj5a_ 24 VEKVLFQGKSDYQDVIVFQSAT-----Y--GKVLVLDG--VIQLTE----RDECAYQEMITHLPLCSIPNPKKVLVIGGG 90 (290)
T ss_dssp EEEEEEEEECSSCEEEEEEESS-----S--CEEEEETT--EEEEET----TTHHHHHHHHHHHHHTTSSCCCEEEEETCS
T ss_pred EeeEEEeCCCCCeEEEEEEeCC-----C--CeEEEECC--eEeeec----cchhHHHHHHhhHHHhhCCCCcceEEecCC
Confidence 4578999999999999999975 3 79999999 788764 34678999887665433 58999999999
Q ss_pred ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c-cCCCeeEEEEcCCCCCCCC
Q 035593 88 AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S-LKDGFSGILVDLFSKGSLL 164 (269)
Q Consensus 88 ~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~-~~~~yD~I~~d~~~~~~~~ 164 (269)
+|.++++++++.+..+|++|||||+|+++|+++|.... ....++|++++.+|++.+ . ..++||+|++|++++...+
T Consensus 91 ~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~-~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~ 169 (290)
T d1xj5a_ 91 DGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA-IGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPA 169 (290)
T ss_dssp SSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGG
T ss_pred chHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh-ccccCCCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcc
Confidence 99999999996566799999999999999999985321 123579999999999998 3 3458999999999987666
Q ss_pred CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCce-E-EEEcCCC--Cce-EEEEe
Q 035593 165 SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKL-Y-VLSLGNR--KDD-SLIAL 239 (269)
Q Consensus 165 ~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v-~-~~~~~~~--~n~-v~~~~ 239 (269)
..|++.+||+.++++|+|||++++|..++.. + ...+..++++++++|++.+ + ...++.. +.+ .++|+
T Consensus 170 ~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~-------~-~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as 241 (290)
T d1xj5a_ 170 KELFEKPFFQSVARALRPGGVVCTQAESLWL-------H-MDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCS 241 (290)
T ss_dssp GGGGSHHHHHHHHHHEEEEEEEEEECCCTTT-------C-HHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEE
T ss_pred hhhCCHHHHHHHHHhcCCCcEEEEecCCcHH-------H-HHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEe
Confidence 7899999999999999999999999977643 2 4467899999999998543 2 2345543 333 46667
Q ss_pred cCC
Q 035593 240 TGE 242 (269)
Q Consensus 240 ~~~ 242 (269)
+++
T Consensus 242 ~~~ 244 (290)
T d1xj5a_ 242 TEG 244 (290)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=2.4e-32 Score=238.66 Aligned_cols=209 Identities=21% Similarity=0.273 Sum_probs=159.7
Q ss_pred ccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEEcCcc
Q 035593 11 VKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGILGFGA 88 (269)
Q Consensus 11 ~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~iG~G~ 88 (269)
.++||+++|+||.|.|++++. | +|+|++|+ .+|+.. .-+..||+.|++.|.+ ..|++||+||+|+
T Consensus 51 ~~vl~~~~S~yQ~I~i~~~~~-----~--G~~L~LDg--~~q~~e----~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~ 117 (312)
T d2b2ca1 51 KKVLFHEKSKYQDVLVFESTT-----Y--GNVLVLDG--IVQATE----RDEFSYQEMLAHLPMFAHPDPKRVLIIGGGD 117 (312)
T ss_dssp EEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEES----SSSSHHHHHHHHHHHHHSSSCCEEEEESCTT
T ss_pred EEEEEecCCCCeEEEEEEcCC-----c--CCEEEECC--ceeeec----ccHHHHHHHhhhHHHhcCCCCCeEEEeCCCc
Confidence 489999999999999999875 3 79999999 788764 3457899988776543 3589999999999
Q ss_pred cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCC
Q 035593 89 GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSE 166 (269)
Q Consensus 89 G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~ 166 (269)
|.++++++++.+..+|++|||||+|+++|+++|.... ....++|++++++||+.+ ...++||+|++|++++...+..
T Consensus 118 G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~-~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~ 196 (312)
T d2b2ca1 118 GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS-CGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAES 196 (312)
T ss_dssp SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS-GGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC--------
T ss_pred hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhc-cccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchh
Confidence 9999999986556799999999999999999986422 124579999999999999 5677899999999988766678
Q ss_pred CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCCC--Cce-EEEEecC
Q 035593 167 LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGNR--KDD-SLIALTG 241 (269)
Q Consensus 167 l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~~--~n~-v~~~~~~ 241 (269)
|++.+||+.++++|+|||++++|..++.. . ...+..+.++++++|+ ++..+ .++.. +++ .++|++.
T Consensus 197 L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~-------~-~~~~~~i~~~l~~vF~-~v~~y~~~vPtyp~G~w~f~~aSk~ 267 (312)
T d2b2ca1 197 LFGQSYYELLRDALKEDGILSSQGESVWL-------H-LPLIAHLVAFNRKIFP-AVTYAQSIVSTYPSGSMGYLICAKN 267 (312)
T ss_dssp -----HHHHHHHHEEEEEEEEEECCCTTT-------C-HHHHHHHHHHHHHHCS-EEEEEEEECTTSGGGEEEEEEEESS
T ss_pred hhhHHHHHHHHhhcCCCcEEEEecCChHH-------h-HHHHHHHHHHhhhccc-eEEEeeeccCCcCCccceeeEEECC
Confidence 99999999999999999999999876643 1 4467889999999997 45443 34442 343 5777765
Q ss_pred C
Q 035593 242 E 242 (269)
Q Consensus 242 ~ 242 (269)
.
T Consensus 268 ~ 268 (312)
T d2b2ca1 268 A 268 (312)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=1.9e-32 Score=240.73 Aligned_cols=214 Identities=15% Similarity=0.177 Sum_probs=166.7
Q ss_pred CCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEEcC
Q 035593 9 DDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGILGF 86 (269)
Q Consensus 9 ~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~iG~ 86 (269)
.-.++|++.+|+||+|.|++++. + +|+|++|+ .+|+.. ..+..|++.|++.|.+ ..+++||+||+
T Consensus 20 ~~~~~l~~~~s~yQ~I~v~~~~~-----~--G~~L~ldg--~~q~~~----~de~~Yhe~l~h~~l~~~~~pk~VLiiG~ 86 (312)
T d1uira_ 20 RMERVIASGKTPFQDYFLFESKG-----F--GKVLILDK--DVQSTE----RDEYIYHETLVHPAMLTHPEPKRVLIVGG 86 (312)
T ss_dssp ECSEEEEEEECSSCEEEEEEETT-----T--EEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSCCCEEEEEEC
T ss_pred EEEEEEEeCCCCCceEEEEEcCC-----c--CcEEEECC--eeeecc----ccHHHHHHHHhhhhhhhCCCcceEEEeCC
Confidence 34579999999999999999975 3 79999998 789864 3567899998765542 35899999999
Q ss_pred cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCC--
Q 035593 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGS-- 162 (269)
Q Consensus 87 G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~-- 162 (269)
|+|..+++++++.+..+|++|||||+++++|+++|.....+..+++|++++++|++++ ..+++||+|++|++++..
T Consensus 87 G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~ 166 (312)
T d1uira_ 87 GEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGED 166 (312)
T ss_dssp TTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTT
T ss_pred CchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCccccc
Confidence 9999999999876788999999999999999999843221223579999999999998 566789999999976532
Q ss_pred -CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE--cCCCC-c-eEEE
Q 035593 163 -LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS--LGNRK-D-DSLI 237 (269)
Q Consensus 163 -~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~-n-~v~~ 237 (269)
.+..|++.+||+.++++|+|||++++|+.++.. ........+.++++++|+ ++..+. ++..+ . ..++
T Consensus 167 ~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~-------~~~~~~~~i~~tl~~~F~-~V~~y~~~vPs~~~~w~f~~ 238 (312)
T d1uira_ 167 NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILL-------THHRVHPVVHRTVREAFR-YVRSYKNHIPGFFLNFGFLL 238 (312)
T ss_dssp CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC----------CHHHHHHHHHHTTCS-EEEEEEEEEGGGTEEEEEEE
T ss_pred chhhhhhhHHHHHHHHHhcCCCceEEEecCCccc-------chHHHHHHHHHHHHHhCc-eEEEEEeeeCCcCCCCEeEE
Confidence 234699999999999999999999999865432 113356677899999997 555443 33322 2 3567
Q ss_pred EecCCC
Q 035593 238 ALTGEL 243 (269)
Q Consensus 238 ~~~~~~ 243 (269)
|++..-
T Consensus 239 aS~~~~ 244 (312)
T d1uira_ 239 ASDAFD 244 (312)
T ss_dssp EESSSC
T ss_pred EeCCCC
Confidence 887643
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=9.9e-17 Score=135.05 Aligned_cols=122 Identities=14% Similarity=0.045 Sum_probs=95.2
Q ss_pred cccchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc
Q 035593 60 SLTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG 139 (269)
Q Consensus 60 ~l~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~ 139 (269)
+......+.+.....+.|..+|||||||+|.++..+++.+ +++|++||+|+.+++.|++.....+ .+++++++.+
T Consensus 16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~g----l~~~v~~~~~ 90 (245)
T d1nkva_ 16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG----VSERVHFIHN 90 (245)
T ss_dssp SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEES
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhh----ccccchhhhh
Confidence 3344455556555567889999999999999999998865 5899999999999999998763222 1468999999
Q ss_pred cccccccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEec
Q 035593 140 NALKASLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 140 D~~~~~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+.++..+++||+|++-.. ..++ ....+++++++.|||||.+++...
T Consensus 91 d~~~~~~~~~fD~v~~~~~-----~~~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 91 DAAGYVANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp CCTTCCCSSCEEEEEEESC-----GGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHhhccccCceeEEEEEeh-----hhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 9998866789999986421 1111 247999999999999999998653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=2.5e-16 Score=131.52 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=91.7
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA- 144 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~- 144 (269)
.+.|.....+.|..+|||||||+|.++..++++ ..+|++||+++.|++.|++++.... .+++.++++|+.+.
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~-----~~~~~~~~~d~~~~~ 77 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKG-----VENVRFQQGTAESLP 77 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEECBTTBCC
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccc-----ccccccccccccccc
Confidence 344544446789999999999999999999985 4689999999999999999875332 35799999999988
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+++||+|++...- .++ ...+++++++++|||||.+++..+..
T Consensus 78 ~~~~~fD~v~~~~~l-----~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 78 FPDDSFDIITCRYAA-----HHFSDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp SCTTCEEEEEEESCG-----GGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ccccccceeeeecee-----ecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 567899999974221 111 24799999999999999988865443
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.65 E-value=5e-16 Score=128.91 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=86.6
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCee
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFS 151 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD 151 (269)
..+.++.+|||||||+|..+..++++ +.+|+++|+|+.+++.|++.+.... .++++++++|+.+. ...++||
T Consensus 11 ~~l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~-----~~~i~~~~~d~~~l~~~~~~fD 83 (231)
T d1vl5a_ 11 AALKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQMPFTDERFH 83 (231)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-CCCSCTTCEE
T ss_pred cCCCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccc-----cccccccccccccccccccccc
Confidence 35678899999999999999999875 4689999999999999998864322 46899999999988 5678999
Q ss_pred EEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|++... ..++ ....++++++++|+|||++++..+.
T Consensus 84 ~v~~~~~-----l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 84 IVTCRIA-----AHHFPNPASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp EEEEESC-----GGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccc-----ccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9997421 1222 2468999999999999999885443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.64 E-value=8.7e-17 Score=135.33 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=84.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++++|||||||+|.++..++++ +.+|++||+|++|++.|++++... ..+++++++|+.++...++||+|++-
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~------~~~v~~~~~d~~~~~~~~~fD~i~~~ 108 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQ------GLKPRLACQDISNLNINRKFDLITCC 108 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHT------TCCCEEECCCGGGCCCSCCEEEEEEC
T ss_pred CCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhcccccccc------Cccceeeccchhhhccccccccccee
Confidence 4689999999999999999884 569999999999999999886432 34799999999998667799999862
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...-......-....+++.++++|+|||.|++.++++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred eeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 1110011111112469999999999999999987653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=3.1e-16 Score=131.80 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=84.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++++|||||||+|..+..++++ +.+|++||++++|++.|++++... ..+++++++|+.++..+++||+|+
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~------~~~i~~~~~d~~~l~~~~~fD~I~ 110 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER------NLKIEFLQGDVLEIAFKNEFDAVT 110 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TCCCEEEESCGGGCCCCSCEEEEE
T ss_pred CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccc------cccchheehhhhhcccccccchHh
Confidence 345789999999999999999983 679999999999999999987532 357999999999986667999998
Q ss_pred EcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+-.. ...++. ...++++++++|+|||++++....
T Consensus 111 ~~~~----~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 111 MFFS----TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp ECSS----GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhh----hhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 7321 111221 347999999999999999987643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.63 E-value=8.5e-16 Score=129.69 Aligned_cols=121 Identities=14% Similarity=0.092 Sum_probs=98.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.+.|+.+|||+|||+|.++.++++. .|+.+|+++|+++++++.|++++.... ...+++++.+|..+...++.||+
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~----~~~nv~~~~~Di~~~~~~~~fD~ 157 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY----DIGNVRTSRSDIADFISDQMYDA 157 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS----CCTTEEEECSCTTTCCCSCCEEE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc----CCCceEEEEeeeecccccceeee
Confidence 4668999999999999999999986 468899999999999999999874211 14689999999988766778999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-h
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-F 219 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F 219 (269)
|++|+.++ .++++.+++.|||||++++.+... .+...+...|++. |
T Consensus 158 V~ld~p~p---------~~~l~~~~~~LKpGG~lv~~~P~i------------~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 158 VIADIPDP---------WNHVQKIASMMKPGSVATFYLPNF------------DQSEKTVLSLSASGM 204 (250)
T ss_dssp EEECCSCG---------GGSHHHHHHTEEEEEEEEEEESSH------------HHHHHHHHHSGGGTE
T ss_pred eeecCCch---------HHHHHHHHHhcCCCceEEEEeCCc------------ChHHHHHHHHHHCCC
Confidence 99987654 368999999999999999977432 2456677777665 5
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.62 E-value=1.5e-15 Score=122.68 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=88.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.+..+|||||||+|.++..+++. ..+|+++|++|++++.|++++.... ..++++++++|+.+. ...+.||+
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~g----l~~~v~~~~gda~~~~~~~~~~D~ 103 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHG----LGDNVTLMEGDAPEALCKIPDIDI 103 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCTTEEEEESCHHHHHTTSCCEEE
T ss_pred CCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcC----CCcceEEEECchhhcccccCCcCE
Confidence 4568899999999999999999873 5699999999999999999874332 136899999999887 66689999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+++.... ...++++.+.+.|||||.++++...
T Consensus 104 v~~~~~~~-------~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 104 AVVGGSGG-------ELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp EEESCCTT-------CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred EEEeCccc-------cchHHHHHHHHHhCcCCEEEEEeec
Confidence 99875322 2478999999999999999988753
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=1.7e-15 Score=128.70 Aligned_cols=125 Identities=17% Similarity=0.198 Sum_probs=100.6
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCC
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKD 148 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~ 148 (269)
....+.|..+|||+|||+|+++.+|++. .|+.+|+++|+++++++.|++++.... .....+++++++|+.+. ..++
T Consensus 90 ~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~--~~~~~nv~~~~~d~~~~~~~~~ 167 (264)
T d1i9ga_ 90 HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY--GQPPDNWRLVVSDLADSELPDG 167 (264)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH--TSCCTTEEEECSCGGGCCCCTT
T ss_pred HHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc--cCCCceEEEEecccccccccCC
Confidence 3345678999999999999999999986 578999999999999999999763210 01246899999999887 5678
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
.||+|++|+.++ .+++..+++.|||||.+++.+... .+...++.+++..
T Consensus 168 ~fDaV~ldlp~P---------~~~l~~~~~~LkpGG~lv~~~P~i------------~Qv~~~~~~l~~~ 216 (264)
T d1i9ga_ 168 SVDRAVLDMLAP---------WEVLDAVSRLLVAGGVLMVYVATV------------TQLSRIVEALRAK 216 (264)
T ss_dssp CEEEEEEESSCG---------GGGHHHHHHHEEEEEEEEEEESSH------------HHHHHHHHHHHHH
T ss_pred CcceEEEecCCH---------HHHHHHHHhccCCCCEEEEEeCcc------------ChHHHHHHHHHHc
Confidence 999999998765 378999999999999999977432 2466777888643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.4e-16 Score=130.69 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=91.2
Q ss_pred cchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 62 TNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 62 ~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
.-+|.+.++.. ...++.+|||||||+|..+.+++++ ...+|++||+||.+++.|++++... ..++.++.+|+
T Consensus 39 ~~~~~~~la~~-~~~~g~~VLdIGcG~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~------~~~~~~~~~~~ 110 (229)
T d1zx0a1 39 ETPYMHALAAA-ASSKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLW 110 (229)
T ss_dssp GHHHHHHHHHH-HTTTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCH
T ss_pred HHHHHHHHHHh-hccCCCeEEEeeccchHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhc------ccccccccccc
Confidence 34555555322 1235789999999999999999885 3468999999999999999997532 35789999998
Q ss_pred ccc---ccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEE
Q 035593 142 LKA---SLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 142 ~~~---~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~ 188 (269)
... ...++||.|+.|.........++ ...++++.++++|||||+|++
T Consensus 111 ~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 111 EDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp HHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 876 45678999999986553333332 245799999999999999987
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=3.2e-15 Score=121.55 Aligned_cols=140 Identities=17% Similarity=0.141 Sum_probs=101.2
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++......++++|||||||+|.++..+++.. .+|+++|+|+.+++.|++++..... ...+++++.+|..+..
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~~l---~~~~i~~~~~d~~~~~ 115 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLYENV 115 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTTTTC
T ss_pred HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHhCC---ccceEEEEEcchhhhh
Confidence 3444433345678999999999999999998754 4899999999999999998754321 2467999999998775
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYV 225 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~ 225 (269)
.+++||+|+++..-+. ..-...++++.+.++|+|||.+++.+.... ....+...+++.|. .+..
T Consensus 116 ~~~~fD~Ii~~~p~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~------------~~~~~~~~l~~~f~-~~~~ 179 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ------------GAKSLAKYMKDVFG-NVET 179 (194)
T ss_dssp TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTH------------HHHHHHHHHHHHHS-CCEE
T ss_pred ccCCceEEEEcccEEe---cchhhhhHHHHHHHhcCcCcEEEEEEeCcC------------CHHHHHHHHHHhCC-cEEE
Confidence 6789999998743211 111135789999999999999877553321 23455666788886 4444
Q ss_pred E
Q 035593 226 L 226 (269)
Q Consensus 226 ~ 226 (269)
+
T Consensus 180 ~ 180 (194)
T d1dusa_ 180 V 180 (194)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.4e-15 Score=125.26 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=85.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||||+|.++..+++ .+.+|+++|+|+.|++.|++.+... ..++..+.+|+.++ ...++||+|
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~--~~~~v~giD~S~~~i~~ak~~~~~~------~~~~~~~~~d~~~l~~~~~~fD~I 106 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLED--YGFEVVGVDISEDMIRKAREYAKSR------ESNVEFIVGDARKLSFEDKTFDYV 106 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHT------TCCCEEEECCTTSCCSCTTCEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhh--hhcccccccccccchhhhhhhhccc------cccccccccccccccccCcCceEE
Confidence 45788999999999999999998 4779999999999999999886422 35678999999988 567899999
Q ss_pred EEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++-. ...++. ...+++++.++|||||.+++....
T Consensus 107 ~~~~-----~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 107 IFID-----SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEES-----CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEec-----chhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9742 222332 246899999999999999887654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.60 E-value=2.3e-15 Score=129.12 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=88.3
Q ss_pred CCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 72 LPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
...+.+..+|||||||+|.++..+++++ +.+|++||+++.+++.|+++....+ ..++++++++|+.++ ..+++|
T Consensus 62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~g----l~~~v~~~~~d~~~l~~~~~sf 136 (282)
T d2o57a1 62 TGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG----LADNITVKYGSFLEIPCEDNSY 136 (282)
T ss_dssp TTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT----CTTTEEEEECCTTSCSSCTTCE
T ss_pred hcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccc----cccccccccccccccccccccc
Confidence 3456788999999999999999999864 7899999999999999998864322 146899999999998 567899
Q ss_pred eEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|++-.. ..|+ ....++++++++|||||.+++..+
T Consensus 137 D~V~~~~~-----l~h~~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 137 DFIWSQDA-----FLHSPDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp EEEEEESC-----GGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhccch-----hhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99986421 1111 246899999999999999988654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=1.5e-13 Score=114.58 Aligned_cols=149 Identities=17% Similarity=0.241 Sum_probs=103.0
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCC--
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDG-- 149 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~-- 149 (269)
.+.|..+|||||||+|..+..+++..|+..|++||++|.|++.+++.... .+++..+.+|++.. .....
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-------~~ni~~i~~d~~~~~~~~~~~~~ 143 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGTTTCCC
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-------hcccceEEEeeccCcccccccce
Confidence 36678999999999999999999988989999999999999999987642 35788999999876 23334
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEc
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSL 228 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~ 228 (269)
+|+|+.+.... -....+++++++.|||||.+++....... ....+....+.++.+.|++. |. .+-.++.
T Consensus 144 v~~i~~~~~~~------~~~~~~l~~~~r~LKpgG~~~i~~k~~~~---d~~~~~~~~~~e~~~~L~~aGF~-ive~idL 213 (230)
T d1g8sa_ 144 VDVIYEDVAQP------NQAEILIKNAKWFLKKGGYGMIAIKARSI---DVTKDPKEIFKEQKEILEAGGFK-IVDEVDI 213 (230)
T ss_dssp EEEEEECCCST------THHHHHHHHHHHHEEEEEEEEEEEEGGGT---CSSSCHHHHHHHHHHHHHHHTEE-EEEEEEC
T ss_pred eEEeeccccch------HHHHHHHHHHHHhcccCceEEEEeecccc---CCCCCHHHHHHHHHHHHHHcCCE-EEEEecC
Confidence 44455443221 12467899999999999998886543322 11122234566677777776 73 3444443
Q ss_pred CC--CCceEEEEe
Q 035593 229 GN--RKDDSLIAL 239 (269)
Q Consensus 229 ~~--~~n~v~~~~ 239 (269)
.. ....++++.
T Consensus 214 ~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 214 EPFEKDHVMFVGI 226 (230)
T ss_dssp TTTSTTEEEEEEE
T ss_pred CCCcCCeEEEEEE
Confidence 32 223445544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=3.5e-15 Score=126.30 Aligned_cols=101 Identities=21% Similarity=0.206 Sum_probs=83.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..|+++|||+|||+|.++..+++ .+.+|+++|+||.+++.|+++...+. -+.+++++|..+....++||+|+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~--~g~~V~gvDis~~av~~A~~na~~n~------~~~~~~~~d~~~~~~~~~fD~V~ 189 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEK--LGGKALGVDIDPMVLPQAEANAKRNG------VRPRFLEGSLEAALPFGPFDLLV 189 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHHTT------CCCEEEESCHHHHGGGCCEEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHh--cCCEEEEEECChHHHHHHHHHHHHcC------CceeEEeccccccccccccchhh
Confidence 45789999999999999998887 46799999999999999999875442 35688899987765667999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...+. ..++++.++++|||||++++.-
T Consensus 190 ani~~~~-------l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 190 ANLYAEL-------HAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp EECCHHH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccc-------HHHHHHHHHHhcCCCcEEEEEe
Confidence 8643221 3678999999999999999864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.57 E-value=1.3e-14 Score=119.40 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=102.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
.+.|..+|||||||+|..+..+++..|+.+|++||++|.|++.|++.... .+++.++.+|+... .....
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-------~~ni~~i~~d~~~~~~~~~~~~~ 125 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIVEK 125 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-------cCCceEEEeeccCccccccccce
Confidence 46788999999999999999999988888999999999999999987642 35799999999875 23456
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLG 229 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~ 229 (269)
+|+|+.|...+ .....+++++.+.|||||.+++.....+. ....+.........+.+++-|. -+-.+...
T Consensus 126 vd~v~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---d~~~~~~~~~~~~~~~l~~gf~-i~E~i~L~ 195 (209)
T d1nt2a_ 126 VDLIYQDIAQK------NQIEILKANAEFFLKEKGEVVIMVKARSI---DSTAEPEEVFKSVLKEMEGDFK-IVKHGSLM 195 (209)
T ss_dssp EEEEEECCCST------THHHHHHHHHHHHEEEEEEEEEEEEHHHH---CTTSCHHHHHHHHHHHHHTTSE-EEEEEECT
T ss_pred EEEEEecccCh------hhHHHHHHHHHHHhccCCeEEEEEEcccc---CCCCCHHHHHHHHHHHHHcCCE-EEEEEccC
Confidence 78887764322 12468999999999999999886643221 1111224456666777777774 34444443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=4.4e-13 Score=111.31 Aligned_cols=138 Identities=22% Similarity=0.328 Sum_probs=100.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
.+.|..+|||+|||+|..+.++++.. |+.+|++||++|.+++.+++.... ..++..+..|+... ....
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-------~~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECCTTCGGGGTTTCC
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-------cCCceEEEEECCCccccccccc
Confidence 46689999999999999999999875 688999999999999999988642 34688888998765 3456
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEc
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSL 228 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~ 228 (269)
.+|+|+.|...+. ....+++++++.|||||.+++.....+. ....+....+..+.+.+++-|. -+-.+..
T Consensus 143 ~vD~i~~d~~~~~------~~~~~l~~~~~~LkpgG~lvi~~ka~~~---~~~~~~~~v~~~v~~l~~~gf~-iie~i~L 212 (227)
T d1g8aa_ 143 KVDVIFEDVAQPT------QAKILIDNAEVYLKRGGYGMIAVKSRSI---DVTKEPEQVFREVERELSEYFE-VIERLNL 212 (227)
T ss_dssp CEEEEEECCCSTT------HHHHHHHHHHHHEEEEEEEEEEEEGGGT---CTTSCHHHHHHHHHHHHHTTSE-EEEEEEC
T ss_pred ceEEEEEEccccc------hHHHHHHHHHHhcccCCeEEEEEECCcc---CCCCCHHHHHHHHHHHHHcCCE-EEEEEcC
Confidence 8999998865332 2467999999999999999887654332 1122223344444444555563 3444443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.7e-15 Score=122.84 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=84.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
...+..+|||||||+|..+..+++.. ..+|++||+++.|++.|++++.... .++++++++|+.++ ...++||+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~-----~~~~~f~~~d~~~~~~~~~~fD~ 130 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDV 130 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccc-----ccccccccccccccccccccccc
Confidence 34457899999999999999887643 3589999999999999999986433 35789999999998 56789999
Q ss_pred EEEcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|++.. ...++.. .++++++++.|+|||.+++..
T Consensus 131 I~~~~-----~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 131 IWIQW-----VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp EEEES-----CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccc-----ccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence 99742 2223332 379999999999999988753
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=1.2e-14 Score=123.70 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=99.1
Q ss_pred CCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCe
Q 035593 72 LPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGF 150 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~y 150 (269)
...+.|..+|||+|||+|.++.++++.. |+.+|+++|++|++++.|++++.... ...++.+..+|.........|
T Consensus 98 ~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g----~~~~v~~~~~d~~~~~~~~~~ 173 (266)
T d1o54a_ 98 MLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG----LIERVTIKVRDISEGFDEKDV 173 (266)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT----CGGGEEEECCCGGGCCSCCSE
T ss_pred hhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc----cccCcEEEeccccccccccce
Confidence 3356789999999999999999999875 68899999999999999999874221 135799999997665566789
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-h
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-F 219 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F 219 (269)
|.|++|+.++ .++++.+.+.|||||.+++.+... .+...+++.+++. |
T Consensus 174 D~V~~d~p~p---------~~~l~~~~~~LKpGG~lv~~~P~~------------~Qv~~~~~~l~~~gF 222 (266)
T d1o54a_ 174 DALFLDVPDP---------WNYIDKCWEALKGGGRFATVCPTT------------NQVQETLKKLQELPF 222 (266)
T ss_dssp EEEEECCSCG---------GGTHHHHHHHEEEEEEEEEEESSH------------HHHHHHHHHHHHSSE
T ss_pred eeeEecCCCH---------HHHHHHHHhhcCCCCEEEEEeCcc------------cHHHHHHHHHHHCCc
Confidence 9999987654 478999999999999999988432 2456777777764 5
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.55 E-value=1.2e-14 Score=124.73 Aligned_cols=116 Identities=23% Similarity=0.345 Sum_probs=91.6
Q ss_pred hHHHHHh-cCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 64 TYFDAFA-TLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 64 ~y~~~~~-~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
.|.+.+. ....+.++.+|||||||+|.++..+++.+| +.+|+++|+++.+++.|++++... ..+++++++|+
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~------~~~~~f~~~d~ 86 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL------PYDSEFLEGDA 86 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS------SSEEEEEESCT
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc------ccccccccccc
Confidence 3566654 333456789999999999999999998777 579999999999999999987532 24699999999
Q ss_pred cccccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEe
Q 035593 142 LKASLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 142 ~~~~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+...+++||+|++...- .++ ....+++++++.|||||.+++..
T Consensus 87 ~~~~~~~~fD~v~~~~~l-----~~~~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 87 TEIELNDKYDIAICHAFL-----LHMTTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp TTCCCSSCEEEEEEESCG-----GGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCceEEEEehhh-----hcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 887555689999975321 222 23589999999999999988755
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.55 E-value=4.1e-14 Score=115.88 Aligned_cols=108 Identities=17% Similarity=0.078 Sum_probs=89.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
...|||||||+|..+..+++.+|+..+++||+++.+++.|.++..... -.+++++.+|+..+ ..++.+|.|+
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~-----l~Nv~~~~~Da~~l~~~~~~~~~d~v~ 104 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLTDVFEPGEVKRVY 104 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh-----ccCchhcccchhhhhcccCchhhhccc
Confidence 446999999999999999999999999999999999999988764322 35799999999876 5678899998
Q ss_pred EcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+....+..-. ..+.+.+|++.+++.|||||.|.+-.
T Consensus 105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8765553211 23567899999999999999998865
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.55 E-value=1e-14 Score=118.61 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++++|||||||+|..+.+++++ +.+|++||+++.+++.|++...... -+++++...|+.+....++||+|++.
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~fD~I~~~ 102 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEG-----LDNLQTDLVDLNTLTFDGEYDFILST 102 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEECCTTTCCCCCCEEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhcc-----ccchhhhheecccccccccccEEEEe
Confidence 5679999999999999999984 6799999999999999998764332 35799999999988667899999975
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..-. ..++ -....++++++++|+|||++++....
T Consensus 103 ~~~~-~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 103 VVMM-FLEA-QTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp SCGG-GSCT-THHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eeee-cCCH-HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3221 1221 12357999999999999998886543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.55 E-value=2.2e-14 Score=118.88 Aligned_cols=111 Identities=13% Similarity=0.101 Sum_probs=84.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
+.|..+|||||||+|..+..+++.. |+++|+++|+|+.|++.|+++..... ...++++..+|+.++ ....+|+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~----~~~~~~~~~~d~~~~-~~~~~d~ 111 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHV-EIKNASM 111 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC----CSSCEEEECSCTTTC-CCCSEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc----ccchhhhccchhhcc-cccccee
Confidence 4578899999999999999998753 68899999999999999999864221 246789999998776 3457888
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++...-+ .. +.-....+++++++.|+|||.+++....
T Consensus 112 i~~~~~l~-~~-~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 112 VILNFTLQ-FL-PPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp EEEESCGG-GS-CGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEeeecc-cc-ChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 88643221 11 1112358999999999999999886443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.53 E-value=2.3e-14 Score=121.24 Aligned_cols=101 Identities=16% Similarity=0.069 Sum_probs=82.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.+..+|||+|||+|.++..++..+. .+|++||+++.|++.||+++.- .++++++++|+.++ ..+++||+|+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~I~ 163 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDLIV 163 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc-------cccceeEEccccccccCCCccceEE
Confidence 3578999999999999998876443 4899999999999999998752 35689999999998 5678999999
Q ss_pred EcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEE
Q 035593 155 VDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~ 189 (269)
+.. ...|+.. .++++++++.|+|||.+++.
T Consensus 164 ~~~-----vl~hl~d~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 164 IQW-----TAIYLTDADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EES-----CGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eec-----cccccchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 742 2234433 47899999999999999884
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.6e-14 Score=123.91 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=94.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCcccc------ccCCCCcEEEEEcccccc--
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKL------EKSYPDRLFVYVGNALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~------~~~~~~rv~~~~~D~~~~-- 144 (269)
.+.|+.+|||+|||+|.++..|++. .|+.+|+++|+++++++.|++++..... ......+++++++|....
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~ 174 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 174 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence 4668999999999999999999986 4788999999999999999987631100 001246899999998876
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
.....||.||+|+.+++ +++..+++.|||||++++.+... .++..++..|+..
T Consensus 175 ~~~~~~fD~V~LD~p~P~---------~~l~~~~~~LKpGG~lv~~~P~i------------~Qv~~~~~~l~~~ 228 (324)
T d2b25a1 175 DIKSLTFDAVALDMLNPH---------VTLPVFYPHLKHGGVCAVYVVNI------------TQVIELLDGIRTC 228 (324)
T ss_dssp ------EEEEEECSSSTT---------TTHHHHGGGEEEEEEEEEEESSH------------HHHHHHHHHHHHH
T ss_pred ccCCCCcceEeecCcCHH---------HHHHHHHHhccCCCEEEEEeCCH------------HHHHHHHHHHHHc
Confidence 34568999999986553 47899999999999999977432 2466777778764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=9.5e-15 Score=121.74 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.++.+|||||||+|..+..+++ .+.+|+++|+++.|++.|+++.. ..++.+|+.+. ...++||+|
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~l~~a~~~~~-----------~~~~~~~~~~l~~~~~~fD~i 106 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQE--RGFEVVLVDPSKEMLEVAREKGV-----------KNVVEAKAEDLPFPSGAFEAV 106 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHT--TTCEEEEEESCHHHHHHHHHHTC-----------SCEEECCTTSCCSCTTCEEEE
T ss_pred cCCCCEEEEECCCCchhcccccc--cceEEEEeecccccccccccccc-----------cccccccccccccccccccce
Confidence 34678999999999999999987 47799999999999999998742 13567899887 556899999
Q ss_pred EEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++-.. +..++ ...++++++.+.|||||++++.+.+
T Consensus 107 i~~~~----~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 107 LALGD----VLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp EECSS----HHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeecc----hhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 86321 11111 2468999999999999999998753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.52 E-value=3.5e-14 Score=117.73 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=82.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++++|||||||+|.++..+++. +.+|++||+|+++++.|++.+. .+++++.+|+.++..+++||+|++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~~~~~~~~fD~I~~ 87 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK---------DGITYIHSRFEDAQLPRRYDNIVL 87 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc---------cccccccccccccccccccccccc
Confidence 35779999999999999998874 5689999999999999998863 359999999988866789999986
Q ss_pred cCCCCCCCCCCCC-cHHHHHHHH-hhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELE-DPNTWEKLR-QCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~-~~e~~~~~~-~~L~pgG~l~~~~~~ 192 (269)
-. +..|+. ...++.+++ +.|+|||.+++.+.+
T Consensus 88 ~~-----vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 88 TH-----VLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp ES-----CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cc-----eeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 32 223333 368889998 789999999997754
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.52 E-value=1.5e-14 Score=122.03 Aligned_cols=113 Identities=16% Similarity=0.080 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~ 152 (269)
..+.++|||||||+|..+..+++. ...+|+|||+|+.+++.|+++..... ...++.++++|+... ...++||+
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~~~~~fD~ 96 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYGRHMDLGKEFDV 96 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcC----CCcceEEEEcchhhhcccccccceE
Confidence 446789999999999998888875 34589999999999999998763211 145799999999765 45778999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++...-+....+.-....+++.+.++|+|||++++.+.+
T Consensus 97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 97 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 9874321110001011247999999999999999987754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=4.2e-14 Score=120.56 Aligned_cols=96 Identities=18% Similarity=0.281 Sum_probs=82.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||||||+|..+..+++.+|+.++++||+++.+++.|++.. ++++++++|+.+. ..++.||+|++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d~~~l~~~~~sfD~v~~ 153 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRLPFSDTSMDAIIR 153 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----------ccccceeeehhhccCCCCCEEEEee
Confidence 578999999999999999999889999999999999999999863 4689999999988 66789999996
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.. . + ..++++++.|||||.+++...++
T Consensus 154 ~~-~----~------~~~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 154 IY-A----P------CKAEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp ES-C----C------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred cC-C----H------HHHHHHHHHhCCCcEEEEEeeCC
Confidence 32 1 1 12578999999999999988654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.50 E-value=1.1e-13 Score=118.59 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=87.9
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK 147 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~ 147 (269)
.+.....+.|..+|||||||.|.++.++++++ +++|++|++|++.++.|+++..... ...++.+...|.+++ +
T Consensus 43 ~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~----l~~~~~~~~~d~~~~--~ 115 (280)
T d2fk8a1 43 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID----TNRSRQVLLQGWEDF--A 115 (280)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCGGGC--C
T ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhc----cccchhhhhhhhhhh--c
Confidence 34444457789999999999999999998865 6799999999999999998874322 135788888887765 5
Q ss_pred CCeeEEEEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 148 DGFSGILVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 148 ~~yD~I~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++||.|++- ++.+ +.. -.-..||+++++.|||||.++++...
T Consensus 116 ~~fD~i~si~~~eh--~~~-~~~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 116 EPVDRIVSIEAFEH--FGH-ENYDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp CCCSEEEEESCGGG--TCG-GGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cchhhhhHhhHHHH--hhh-hhHHHHHHHHHhccCCCceEEEEEee
Confidence 689999863 2221 111 12368999999999999999997643
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=2.1e-14 Score=118.47 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=84.1
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL 146 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~ 146 (269)
|.....+.|..+|||||||+|..+..+++.. +..+|+++|+++++++.|++++.... -.++.++++|+.+. ..
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-----~~n~~~~~~d~~~~~~~ 141 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGDGYYGVPE 141 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGG
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-----ccccccccCchHHcccc
Confidence 3344457889999999999999999998865 57899999999999999999875332 35789999999876 55
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.++||+|+++..-. .+ .+.+.+.|||||++++-+
T Consensus 142 ~~~fD~I~~~~~~~-~~---------p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 142 FSPYDVIFVTVGVD-EV---------PETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GCCEEEEEECSBBS-CC---------CHHHHHHEEEEEEEEEEB
T ss_pred ccchhhhhhhccHH-Hh---------HHHHHHhcCCCcEEEEEE
Confidence 67899999865322 11 134667899999998855
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.49 E-value=3.7e-13 Score=110.06 Aligned_cols=108 Identities=11% Similarity=0.066 Sum_probs=88.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
...|||||||.|..+..+++.+|+..+++||+++.++..|.++..... -++++++.+|+..+ .....+|.|+
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~-----l~Ni~~~~~da~~l~~~~~~~~~~~i~ 106 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSDLTDYFEDGEIDRLY 106 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc-----cccceeeecCHHHHhhhccCCceehhc
Confidence 346999999999999999999999999999999999999887764222 35799999999886 4567899999
Q ss_pred EcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+..+++..-. ..+.+.+|++.+.+.|+|||.|.+..
T Consensus 107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8766553211 13567899999999999999998765
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.7e-13 Score=113.24 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=88.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------cc
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~ 146 (269)
+..+++||+||+|+|..+.++++..| +.+|+++|++|+..+.|++++.... ...+++++.+|+.+. ..
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag----~~~~i~~~~Gda~e~l~~~~~~~~ 132 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKIDLRLKPALETLDELLAAGE 132 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHHHHHTTC
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC----ccceEEEEEeehhhcchhhhhhcc
Confidence 34689999999999999999998776 7899999999999999999985332 246899999999875 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+||+|++|+.... ..++|+.+.+.|+|||++++.-
T Consensus 133 ~~~fD~ifiD~dk~~-------y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 133 AGTFDVAVVDADKEN-------CSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp TTCEEEEEECSCSTT-------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCccEEEEeCCHHH-------HHHHHHHHHHHhcCCcEEEEeC
Confidence 568999999975432 5789999999999999999853
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.5e-13 Score=117.15 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=86.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+.+|||+|||+|+++..+++..|+.+|+++|+++..++.|+++..... -.+++++.+|..+.....+||+|+++
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~-----~~~v~~~~~d~~~~~~~~~fDlIvsN 182 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA-----IKNIHILQSDWFSALAGQQFAMIVSN 182 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT-----CCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC-----cccceeeecccccccCCCceeEEEec
Confidence 4678999999999999999999999999999999999999999875332 24799999998876556799999997
Q ss_pred CCCCCC-----------CCCC--CC--------cHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGS-----------LLSE--LE--------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~-----------~~~~--l~--------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++--.. ..++ +. ...+++.+.+.|+|||.+++.+.
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 532110 0111 11 13577888999999999999764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.48 E-value=2.5e-14 Score=115.06 Aligned_cols=116 Identities=7% Similarity=-0.056 Sum_probs=84.9
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-------cCCCCcEEEEEcccccc--
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-------KSYPDRLFVYVGNALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-------~~~~~rv~~~~~D~~~~-- 144 (269)
.+.|+.+|||+|||+|..+.+|+++ +.+|++||+|+.|++.|++..+..... ......++++.+|..+.
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 3557899999999999999999985 789999999999999999986432100 01235578888998877
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.....||+|+....-. ..+. -....+++.+++.|||||.+++.....
T Consensus 95 ~~~~~~D~i~~~~~l~-~l~~-~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMI-ALPA-DMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp HHHHSEEEEEEESCGG-GSCH-HHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccccceeEEEEEeeeE-ecch-hhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 3456899998632211 1111 113578999999999999887765443
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=5.3e-14 Score=116.88 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
+.+.|..+|||||||+|..+..+++.. +..+|+++|+++++++.|++++...........+++++.+|+... .....|
T Consensus 72 ~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~f 151 (224)
T d1i1na_ 72 DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY 151 (224)
T ss_dssp TTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhh
Confidence 457789999999999999998888753 578999999999999999988742110000135799999999876 666799
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+|+++..... ..+.+.+.|||||++++-+..
T Consensus 152 D~I~~~~~~~~----------ip~~l~~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 152 DAIHVGAAAPV----------VPQALIDQLKPGGRLILPVGP 183 (224)
T ss_dssp EEEEECSBBSS----------CCHHHHHTEEEEEEEEEEESC
T ss_pred hhhhhhcchhh----------cCHHHHhhcCCCcEEEEEEcc
Confidence 99998754321 123567889999999997643
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=3.2e-13 Score=116.29 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=88.1
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCC
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKD 148 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~ 148 (269)
+.....+.+..+|||||||.|+++.++++++ +++|+++++|++.++.|++.....+ ...++++...|.+. .++
T Consensus 53 ~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~----l~~~v~~~~~d~~~--~~~ 125 (291)
T d1kpia_ 53 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVD----SPRRKEVRIQGWEE--FDE 125 (291)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSC----CSSCEEEEECCGGG--CCC
T ss_pred HHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhc----cchhhhhhhhcccc--ccc
Confidence 3344467789999999999999999999876 5799999999999999998764222 24589999988764 357
Q ss_pred CeeEEEEc-CCCCCCCCC----CCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVD-LFSKGSLLS----ELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d-~~~~~~~~~----~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+||.|++- .+.+..-.. .-.-+.||+++.+.|||||.+++..+.
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 89999853 333211000 011268999999999999999997764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=3.8e-13 Score=115.49 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=89.9
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK 147 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~ 147 (269)
.+.....+.|..+|||||||.|.++.++++.+ +++|++|.+|++.++.|++...... ...++++..+|.+++ +
T Consensus 53 ~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g----~~~~v~~~~~d~~~~--~ 125 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE----NLRSKRVLLAGWEQF--D 125 (285)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC----CCSCEEEEESCGGGC--C
T ss_pred HHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhh----hhhhhHHHHhhhhcc--c
Confidence 34444567889999999999999999999876 6899999999999999998764322 246899999998766 4
Q ss_pred CCeeEEEEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 148 DGFSGILVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 148 ~~yD~I~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++||.|++- .+.+ +. +-.-..+|+++.+.|+|||.+++..+.
T Consensus 126 ~~fD~i~si~~~eh--~~-~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 126 EPVDRIVSIGAFEH--FG-HERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp CCCSEEEEESCGGG--TC-TTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ccccceeeehhhhh--cC-chhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 689999852 2222 11 122368999999999999999987654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.44 E-value=2.3e-13 Score=114.82 Aligned_cols=105 Identities=21% Similarity=0.275 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+.++|||||||+|..+..+++++|+.+++++|+ |++++.+++++.... ...|++++.+|+.+.. +.+||+|++
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~rv~~~~~D~~~~~-~~~~D~v~~ 152 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG----LSDRVDVVEGDFFEPL-PRKADAIIL 152 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT----CTTTEEEEECCTTSCC-SSCEEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh----cccchhhccccchhhc-ccchhheee
Confidence 3468999999999999999999999999999998 789999998874322 2468999999987643 357999987
Q ss_pred cCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
... ..++.. ..++++++++|||||.+++.-.
T Consensus 153 ~~v-----lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 153 SFV-----LLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp ESC-----GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccc-----cccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 422 112222 4789999999999998888643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.44 E-value=2e-13 Score=113.32 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c------c
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S------L 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~------~ 146 (269)
..+++||+||+++|..+.++++..| +.+|+++|++|+..+.|++++...+ ..++++++.+|+.+. . .
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g----~~~~i~~~~g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG----VDHKIDFREGPALPVLDEMIKDEKN 133 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHHCGGG
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc----cccceeeeehHHHHHHHHHHhcccc
Confidence 3689999999999999999998887 7899999999999999999985433 246899999999876 1 2
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.++||+||+|+.... ..++|+.+.+.|+|||++++.
T Consensus 134 ~~~fD~iFiDa~k~~-------y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 134 HGSYDFIFVDADKDN-------YLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp TTCBSEEEECSCSTT-------HHHHHHHHHHHBCTTCCEEEE
T ss_pred CCceeEEEeccchhh-------hHHHHHHHHhhcCCCcEEEEc
Confidence 568999999976532 578999999999999999985
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.43 E-value=1.5e-13 Score=113.95 Aligned_cols=104 Identities=13% Similarity=0.213 Sum_probs=82.4
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccC
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLK 147 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~ 147 (269)
|+....+.+..+|||||||+|.++..|++. ..+|+++|+++++++.|++++.. ..+++++++|+... ...
T Consensus 62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~-------~~nv~~~~~d~~~g~~~~ 132 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY-------YNNIKLILGDGTLGYEEE 132 (224)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT-------CSSEEEEESCGGGCCGGG
T ss_pred HHHHhhhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc-------ccccccccCchhhcchhh
Confidence 344446778999999999999999988885 46999999999999999998652 35899999999875 556
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+||+|++.+.-. + ....+.+.|+|||+|++-+.
T Consensus 133 ~pfD~Iiv~~a~~-----~-----ip~~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 133 KPYDRVVVWATAP-----T-----LLCKPYEQLKEGGIMILPIG 166 (224)
T ss_dssp CCEEEEEESSBBS-----S-----CCHHHHHTEEEEEEEEEEEC
T ss_pred hhHHHHHhhcchh-----h-----hhHHHHHhcCCCCEEEEEEc
Confidence 7899999865322 1 12345678999999998654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.6e-13 Score=110.22 Aligned_cols=114 Identities=13% Similarity=-0.031 Sum_probs=86.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc------------cCCCCcEEEEEcccc
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE------------KSYPDRLFVYVGNAL 142 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~------------~~~~~rv~~~~~D~~ 142 (269)
+.++.+|||+|||.|..+.+|++ .+.+|++||++|.+++.|++..+..... .....+++++++|..
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~--~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFAD--RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHH--TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 44678999999999999999998 4789999999999999999876432100 113468999999998
Q ss_pred cc--ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 143 KA--SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 143 ~~--~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+ .....||+|+.-..-. ..++. ....+++.+.+.|+|||.+++....
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~-~~~~~-~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALV-AINPG-DRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTT-TSCGG-GHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred hccccccCceeEEEEEEEEE-eccch-hhHHHHHHHHhhcCCcceEEEEEcc
Confidence 87 4567899998643322 12221 2468999999999999987665543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=3e-13 Score=114.64 Aligned_cols=104 Identities=19% Similarity=0.118 Sum_probs=88.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||+|||+|.++..++++ +.++|+++|+||..++.+++++..+.+ ..+++++++|++++.....||.|+
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l----~~~v~~~~~D~~~~~~~~~~D~Ii 179 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPGENIADRIL 179 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCCCSCEEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCC----CceEEEEEcchHHhccCCCCCEEE
Confidence 457899999999999999999885 567999999999999999999866542 468999999999996678899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++.+.. ..+|+..+.+.|++||++.++..
T Consensus 180 ~~~p~~--------~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 180 MGYVVR--------THEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp ECCCSS--------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCc--------hHHHHHHHHhhcCCCCEEEEEec
Confidence 875422 46899999999999999977654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=4.8e-13 Score=109.01 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.|..+|||||||+|.++..+. ++++||+++.+++.|+++ +++++++|+.+. ..+++||+|+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~l~~~~~~fD~I~ 96 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDFAL 96 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc------------ccccccccccccccccccccccc
Confidence 456789999999999887763 368999999999999874 378999999988 5678999999
Q ss_pred EcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+... ..++ ...+++++++++|+|||.+++...+.
T Consensus 97 ~~~~-----l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 97 MVTT-----ICFVDDPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp EESC-----GGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cccc-----cccccccccchhhhhhcCCCCceEEEEecCC
Confidence 7422 2222 24689999999999999999987654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.37 E-value=1.8e-12 Score=112.71 Aligned_cols=131 Identities=12% Similarity=0.005 Sum_probs=95.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
+.++++|||++||+|..+.+++. ....+|++||+|+..++.|++++..+.. ...+++++.+|+.++ ...++
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l---~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHL---DMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTC---CCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hhCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhcc---cCcceEEEEccHHHHHHHHHhhcCC
Confidence 45789999999999999998776 2345899999999999999999865542 235899999999887 34678
Q ss_pred eeEEEEcCCCCCCCCCCCCc-----HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 150 FSGILVDLFSKGSLLSELED-----PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~-----~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
||+|++|++.-......... .++++.+.+.|+|||+|++.+.++.. + ...+...+.+.+.
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~-------~----~~~f~~~v~~a~~ 282 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-------T----VSQFKKQIEKGFG 282 (317)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-------C----HHHHHHHHHHHHT
T ss_pred CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC-------C----HHHHHHHHHHHHH
Confidence 99999997643211112221 36888889999999999997776532 1 2344555666664
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.4e-12 Score=113.19 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=87.5
Q ss_pred chHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 63 NTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 63 ~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
..|.+++.....+.+.++|||||||+|.++..+++. ...+|+++|+++.+...++... ... ...+++++.+|..
T Consensus 21 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~~-~~~----~~~~i~~~~~~~~ 94 (311)
T d2fyta1 21 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIR-LNK----LEDTITLIKGKIE 94 (311)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHH-HTT----CTTTEEEEESCTT
T ss_pred HHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHHH-HhC----CCccceEEEeeHH
Confidence 457777755544567889999999999999999884 3459999999998875444322 222 1468999999999
Q ss_pred cc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 143 KA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 143 ~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
++ ...++||+|++...... .........++....+.|+|||.++-
T Consensus 95 ~l~~~~~~~D~Ivse~~~~~-~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 95 EVHLPVEKVDVIISEWMGYF-LLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TSCCSCSCEEEEEECCCBTT-BTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred HhcCccccceEEEEeeeeee-cccccccHHHHHHHHhcCCCCcEEec
Confidence 98 56689999998755432 22222235777778889999998874
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=9e-13 Score=114.87 Aligned_cols=111 Identities=14% Similarity=0.000 Sum_probs=87.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
+.++|||++||+|..+.++++ .+.+|++||+|+.+++.|++++..+. -.+++++.+|+.++ ...++||
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ng-----l~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL--GFREVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeeeccCCCCcHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcC-----CCCcceeeccHHHHhhhhHhhhcCCC
Confidence 578999999999999998876 46799999999999999999986554 24699999999886 3567999
Q ss_pred EEEEcCCCCCCCCCCCC-----cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKGSLLSELE-----DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~-----~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|++|++.......... ..++++.+.+.|+|||+|++...+..
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~ 265 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 265 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99999754321111111 13678888999999999998776653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.37 E-value=1.3e-12 Score=110.50 Aligned_cols=105 Identities=22% Similarity=0.141 Sum_probs=82.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+.++|||||||+|.++..+++++|+.+++++|+ |++++.|++++...+ ..+|++++.+|..+. .+..||+|++
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~----~~~ri~~~~~d~~~~-~p~~~D~v~~ 153 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG----LADRVTVAEGDFFKP-LPVTADVVLL 153 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSC-CSCCEEEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC----Ccceeeeeeeecccc-ccccchhhhc
Confidence 3568999999999999999999999999999998 889999998874322 246899999998764 3456999987
Q ss_pred cCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
-..- .++. ...+++++++.|||||.+++.-.
T Consensus 154 ~~vL-----h~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVL-----LNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCG-----GGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccc-----cccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 4221 1222 24789999999999998887643
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=6.5e-13 Score=114.17 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~ 152 (269)
+.++|||||||+|.++..|+++ +.+|++||+|++|++.|+++....... ....+..+...|.... ...++||+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccc-cccceeeeeeccccccccccCCCCCceE
Confidence 4679999999999999999983 689999999999999999875311100 0011344555555443 34578999
Q ss_pred EEEcCCCCCCCCCCC----CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSEL----EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l----~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++-...-...+... ....++++++++|||||+|++...+
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 986321111122111 1246999999999999999997754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=1.3e-12 Score=114.16 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=88.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
+.+.++|||+|||+|..+..+++. ...+|++||+++.+++.|++++..+.. ..+++++++|+.++ ...++
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl----~~~~~~~~~d~~~~~~~~~~~~~~ 217 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQKKGEK 217 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCC----CccceeeechhhhhhHHHHhccCC
Confidence 457899999999999999998874 345999999999999999999865542 35899999999876 35679
Q ss_pred eeEEEEcCCCCCCCCCCC-----CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 150 FSGILVDLFSKGSLLSEL-----EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l-----~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
||+|++|++......... ...+++..+.+.|+|||+|++...+..
T Consensus 218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 999999976432111111 113578888899999999988776553
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.35 E-value=4.3e-13 Score=104.62 Aligned_cols=106 Identities=16% Similarity=0.061 Sum_probs=81.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
..++|||+|||+|.++.+++.+ ...+|++||+|+.+++.+++++.... ...+++++.+|+..+ ...++||+|+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~----~~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK----AENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT----CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcc----cccchhhhcccccccccccccccceeE
Confidence 5889999999999999988874 33599999999999999999875432 135799999999987 5678999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHH--hhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLR--QCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~--~~L~pgG~l~~~~~~ 192 (269)
+|++-.. -.....+..+. +.|+|+|++++....
T Consensus 89 ~DPPy~~-----~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 89 LDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp ECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred echhhcc-----chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 9853110 01235555554 459999999987643
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=1.2e-12 Score=114.51 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=86.9
Q ss_pred chHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 63 NTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 63 ~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
..|.+++.......+.++|||||||+|.++..++++ ...+|+++|.++ +++.|++...... ...+++++.+|..
T Consensus 24 ~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~----~~~~i~~i~~~~~ 97 (328)
T d1g6q1_ 24 LSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNG----FSDKITLLRGKLE 97 (328)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTT----CTTTEEEEESCTT
T ss_pred HHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhC----ccccceEEEeehh
Confidence 346666533222346889999999999999988874 345999999997 6677777653322 2468999999999
Q ss_pred cc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 143 KA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 143 ~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
+. ...++||+|++..... ..........++..+.+.|||||+++
T Consensus 98 ~l~~~~~~~D~i~se~~~~-~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 98 DVHLPFPKVDIIISEWMGY-FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TSCCSSSCEEEEEECCCBT-TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hccCcccceeEEEEEecce-eeccchhHHHHHHHHHhccCCCeEEE
Confidence 98 5678999999876543 12222334678888899999999886
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.34 E-value=9.2e-13 Score=109.10 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=81.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC------CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY------PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~------p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~ 146 (269)
.+.|..+||+||||+|..+..+++.. +..+|++||+++++++.|++++.........-.++.++.+|+.+. ..
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 57789999999999999998888753 345899999999999999987532110000124799999999886 66
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..+||+|++++... ..+ +.+.+.|+|||++++-+..
T Consensus 157 ~~~fD~Iiv~~a~~-~~p---------~~l~~~Lk~gG~lV~pvg~ 192 (223)
T d1r18a_ 157 NAPYNAIHVGAAAP-DTP---------TELINQLASGGRLIVPVGP 192 (223)
T ss_dssp GCSEEEEEECSCBS-SCC---------HHHHHTEEEEEEEEEEESC
T ss_pred ccceeeEEEEeech-hch---------HHHHHhcCCCcEEEEEEec
Confidence 77999999975432 111 3467899999999987653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=2.3e-12 Score=112.16 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=86.4
Q ss_pred chHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 63 NTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 63 ~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
..|.+++.....+.+.++|||||||+|.++..++++ ...+|++||+++.+ ..+++....+. ...+++++.+|+.
T Consensus 19 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~-~~a~~~~~~n~----~~~~v~~~~~~~~ 92 (316)
T d1oria_ 19 LTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSIS-DYAVKIVKANK----LDHVVTIIKGKVE 92 (316)
T ss_dssp HHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTH-HHHHHHHHHTT----CTTTEEEEESCTT
T ss_pred HHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHH-hhhhhHHHHhC----CccccceEeccHH
Confidence 346666643333447889999999999999998884 34589999999865 55555443222 1468999999999
Q ss_pred cc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 143 KA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 143 ~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+. ...++||+|+++.... .....-..++++..+.+.|+|||.++-
T Consensus 93 ~~~~~~~~~D~ivs~~~~~-~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 93 EVELPVEKVDIIISEWMGY-CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TCCCSSSCEEEEEECCCBB-TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred HcccccceeEEEeeeeeee-eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 98 5668999999875533 122233346899999999999998863
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.32 E-value=1.8e-12 Score=106.57 Aligned_cols=107 Identities=22% Similarity=0.324 Sum_probs=83.9
Q ss_pred hcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCC
Q 035593 70 ATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKD 148 (269)
Q Consensus 70 ~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~ 148 (269)
+....+.+..+||+||||+|..+..+++.. +.+|+++|+++.+++.|++.+.... -.+++++++|+..- ....
T Consensus 71 l~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g-----~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 71 LEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAG-----VKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGC
T ss_pred HHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcC-----CceeEEEECccccCCcccC
Confidence 344457789999999999999999988754 5789999999999999999874222 36899999999886 6678
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+||.|++.+.-. ..| ..+.+.|+|||++++-+..
T Consensus 145 pfD~Iiv~~a~~-~ip---------~~l~~qL~~gGrLv~pv~~ 178 (215)
T d1jg1a_ 145 PYDVIIVTAGAP-KIP---------EPLIEQLKIGGKLIIPVGS 178 (215)
T ss_dssp CEEEEEECSBBS-SCC---------HHHHHTEEEEEEEEEEECS
T ss_pred cceeEEeecccc-cCC---------HHHHHhcCCCCEEEEEEcc
Confidence 999999864332 121 2355679999999987644
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.28 E-value=6.3e-12 Score=108.40 Aligned_cols=114 Identities=17% Similarity=0.025 Sum_probs=85.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
..++++||+++||+|.++.++++ .+++|++||+++.+++.|++++.++.. .+.+++++++|+.++ ...++
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~--~GA~V~~VD~s~~al~~a~~N~~ln~~---~~~~~~~i~~D~~~~l~~~~~~~~~ 204 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAA--AGAEVTHVDASKKAIGWAKENQVLAGL---EQAPIRWICEDAMKFIQREERRGST 204 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHTC---TTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred ccCCCeEEEecCCCcHHHHHHHh--CCCeEEEEeChHHHHHHHHHhhhhhcc---cCCcEEEEeCCHHHhHHHHhhcCCC
Confidence 34578999999999999999887 467999999999999999999866542 245799999999987 34679
Q ss_pred eeEEEEcCCCCCCCCCC-C-----CcHHHHHHHHhhccCCcE-EEEEecCC
Q 035593 150 FSGILVDLFSKGSLLSE-L-----EDPNTWEKLRQCLRKGGR-IMVNVGGS 193 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~-l-----~~~e~~~~~~~~L~pgG~-l~~~~~~~ 193 (269)
||+||+|.+.-...... . +...+++.+.+.|+|||. +++++.+.
T Consensus 205 fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~ 255 (309)
T d2igta1 205 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 255 (309)
T ss_dssp BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred CCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 99999996532111111 1 123566778899999885 55555443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=2.1e-12 Score=106.22 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=81.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------ccCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SLKD 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~~ 148 (269)
.|++||+||+|+|..+.++++..+ +.+|+++|+++++.+.|++++...+ ...+++++.+|+.+. ....
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g----l~~~i~l~~Gd~~e~l~~l~~~~~~~ 131 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG----LQDKVTILNGASQDLIPQLKKKYDVD 131 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC----CCccceeeeccccccccchhhccccc
Confidence 588999999999999999998765 6899999999999999998875332 135899999999875 1346
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+||+|++|..... . .....+..+.+.|+|||++++.
T Consensus 132 ~~D~ifiD~~~~~-~----~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 132 TLDMVFLDHWKDR-Y----LPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp CEEEEEECSCGGG-H----HHHHHHHHHTTCEEEEEEEEES
T ss_pred ccceeeecccccc-c----ccHHHHHHHhCccCCCcEEEEe
Confidence 8999999854221 0 0123456677889999999884
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.4e-11 Score=104.79 Aligned_cols=110 Identities=17% Similarity=0.067 Sum_probs=77.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHH----CCC--ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------
Q 035593 77 PPGPIGILGFGAGSAARLILDL----YPE--AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------ 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~----~p~--~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------ 144 (269)
+..+|||||||+|.++..+++. +++ .++++||+++.|++.|++++..... ...-++.+...++.++
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN--LENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS--CTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc--cccccccchhhhhhhhcchhcc
Confidence 3458999999999988776553 444 4789999999999999998742210 0112344555555443
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...++||+|++-.. ..++ ....+++.+++.|+|||.+++...+.
T Consensus 118 ~~~~~~fD~I~~~~~-----l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 118 KKELQKWDFIHMIQM-----LYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp SSSCCCEEEEEEESC-----GGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCCceeEEEEccc-----eecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 34679999997422 1122 23689999999999999998887654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=3.1e-11 Score=97.38 Aligned_cols=113 Identities=26% Similarity=0.209 Sum_probs=90.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------ccCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~~~~ 148 (269)
..+...+||++||+|..+..+++++|+++|+++|+||++++.|++.+... ..|++++++++.+. ...+
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~------~~r~~~~~~~f~~~~~~~~~~~~~ 94 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF------SDRVSLFKVSYREADFLLKTLGIE 94 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG------TTTEEEEECCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc------cccccchhHHHhhHHHHHHHcCCC
Confidence 45788999999999999999999999999999999999999999987532 46899999998875 2357
Q ss_pred CeeEEEEcCCCCCCC---C-C-CCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 149 GFSGILVDLFSKGSL---L-S-ELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~---~-~-~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++|.|+.|+--+... + . .-...+.+..+.+.|+|||.+++..+..
T Consensus 95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 999999996422100 0 1 1123578899999999999998877654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.5e-11 Score=105.05 Aligned_cols=119 Identities=16% Similarity=0.050 Sum_probs=85.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-----cccccCCCCcEEEEEc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-----EKLEKSYPDRLFVYVG 139 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-----~~~~~~~~~rv~~~~~ 139 (269)
..+.|.....+.+...|||||||+|.++..+++.++..+++|||+++.+++.|++.... ..++ ....+++++++
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g-~~~~~i~~~~g 217 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG-KKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT-CCCCCEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc-ccCCceEEEEC
Confidence 34445444456788999999999999999999888777999999999999999865321 0000 02457999999
Q ss_pred ccccc-ccC--CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 140 NALKA-SLK--DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 140 D~~~~-~~~--~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+.+. ... ...|+|++..+.. .+ .....+.++.+.|||||.+++.
T Consensus 218 d~~~~~~~~~~~~advi~~~~~~f---~~--~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 218 DFLSEEWRERIANTSVIFVNNFAF---GP--EVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp CTTSHHHHHHHHHCSEEEECCTTT---CH--HHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccccccCcceEEEEcceec---ch--HHHHHHHHHHHhCCCCcEEEEe
Confidence 99876 222 2357888753321 11 1247889999999999999874
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.17 E-value=2.1e-11 Score=96.68 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD 151 (269)
+..+.+|||+|||+|.++.+++.+ ++++++||+|+.+++.+++++..... ..++....+|.... ...++||
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD 112 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL----GARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC----CCEEECSCHHHHHHHHHHTTCCEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcc----ccceeeeehhcccccccccCCccc
Confidence 446889999999999999988873 67899999999999999998754321 23444444443222 4567899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHH--hhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLR--QCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~--~~L~pgG~l~~~~~ 191 (269)
+|++|++-.. . ..+.+..+. ..|+|||++++...
T Consensus 113 ~If~DPPY~~----~--~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 113 VAFMAPPYAM----D--LAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp EEEECCCTTS----C--TTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred eeEEcccccc----C--HHHHHHHHHHcCCcCCCeEEEEEec
Confidence 9999864221 1 123444443 46999999988654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=4.8e-11 Score=95.58 Aligned_cols=104 Identities=18% Similarity=-0.022 Sum_probs=81.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
...+|||++||+|+++.+++.+ ...+|+.||+|+.+++.+++++.... ..+++++.+|+..+ ....+||+|+
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~-----~~~~~ii~~d~~~~l~~~~~~fDlIf 116 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLK-----AGNARVVNSNAMSFLAQKGTPHNIVF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhcc-----ccceeeeeecccccccccccccCEEE
Confidence 5679999999999999988874 34589999999999999999875322 34689999999987 4567899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHh--hccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQ--CLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~--~L~pgG~l~~~~~ 191 (269)
+|++-.. -...+.+..+.+ .|+++|++++...
T Consensus 117 ~DPPY~~-----~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 117 VDPPFRR-----GLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp ECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EcCcccc-----chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 9964221 123567777765 5999999998753
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=3.6e-10 Score=95.68 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=81.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
..++||+|||+|.++..+++ +|+.+|+++|+||..+++|+++..... ...++.++.+|..+. ...++||+|++
T Consensus 111 ~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~----~~~~~~i~~~~~~~~~~~~~~~fDlIVs 185 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHG----VSDRFFVRKGEFLEPFKEKFASIEMILS 185 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTT----CTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred ccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcC----CCceeEEeecccccccccccCcccEEEE
Confidence 56899999999999999886 589999999999999999999875433 145899999998876 34579999999
Q ss_pred cCCCCCC---CC------CC------CCcHHHHHH-HHhhccCCcEEEEEec
Q 035593 156 DLFSKGS---LL------SE------LEDPNTWEK-LRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~---~~------~~------l~~~e~~~~-~~~~L~pgG~l~~~~~ 191 (269)
+++--.. .+ |+ -.-.++++. +.+.|+|||++++-+.
T Consensus 186 NPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 186 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7531110 01 10 011255555 5678999999998874
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.12 E-value=7e-11 Score=94.57 Aligned_cols=108 Identities=22% Similarity=0.115 Sum_probs=82.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
.....+|||++||+|+++.+++.+ ...+|+.||.|+++++.+++++.... ...+++++.+|+..+ ....+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~----~~~~~~i~~~D~~~~l~~~~~~~~~ 113 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK----EPEKFEVRKMDANRALEQFYEEKLQ 113 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred hcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhh----cccccccccccchhhhhhhcccCCC
Confidence 346889999999999999998884 34589999999999999999874322 134799999999876 34668
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHh--hccCCcEEEEEecC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQ--CLRKGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~--~L~pgG~l~~~~~~ 192 (269)
||+||+|++-.. -...+.+..+.+ .|+++|++++....
T Consensus 114 fDlIflDPPY~~-----~~~~~~l~~i~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 114 FDLVLLDPPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETDK 153 (182)
T ss_dssp EEEEEECCCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cceEEechhhhh-----hHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence 999999864111 113567777754 59999999987643
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.3e-09 Score=91.30 Aligned_cols=77 Identities=13% Similarity=-0.054 Sum_probs=64.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~~~y 150 (269)
..++||||||+|+++..|+++.|+.+++++|++++++++|+++...+.+ ..++.++..+.... ...++|
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l----~~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC----CcceeeeeeccHHhhhhhhhhcccCce
Confidence 5689999999999999999988999999999999999999999765432 46899998776543 235689
Q ss_pred eEEEEcCC
Q 035593 151 SGILVDLF 158 (269)
Q Consensus 151 D~I~~d~~ 158 (269)
|+|+++++
T Consensus 138 D~ivsNPP 145 (250)
T d2h00a1 138 DFCMCNPP 145 (250)
T ss_dssp SEEEECCC
T ss_pred eEEEecCc
Confidence 99999854
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=7.7e-10 Score=89.73 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=69.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+++|||+|||+|.++..++. .+..+|++||+|+.+++.|++++... ..+.+++.+|+..+ .++||+|++|
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a~~N~~~~------~~~~~~~~~d~~~~--~~~fD~Vi~n 116 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLIENLGEF------KGKFKVFIGDVSEF--NSRVDIVIMN 116 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHTGGG------TTSEEEEESCGGGC--CCCCSEEEEC
T ss_pred CCCEEEECcCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHHHHHHHHc------CCCceEEECchhhh--CCcCcEEEEc
Confidence 578999999999999998876 34569999999999999999987533 35789999998776 5689999998
Q ss_pred CCCCCCCCCCCCcHHHHHHHHh
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
++-.. ........|+....+
T Consensus 117 PP~~~--~~~~~d~~~l~~~~~ 136 (201)
T d1wy7a1 117 PPFGS--QRKHADRPFLLKAFE 136 (201)
T ss_dssp CCCSS--SSTTTTHHHHHHHHH
T ss_pred Ccccc--ccccccHHHHHHHHh
Confidence 65321 122234566665544
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.04 E-value=3.3e-10 Score=91.47 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=64.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+++|||+|||+|.++..++.. ...+|++||+|+.+++.|+++.. +++++++|+.++ +++||+|++|
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~~----------~~~~~~~D~~~l--~~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSEI--SGKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGGC--CCCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHccc----------cccEEEEehhhc--CCcceEEEeC
Confidence 5889999999999999887763 44589999999999999999753 578999998765 4689999998
Q ss_pred CCCCCCCCCCCCcHHHHHHHHh
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
.+-. .........|++.+.+
T Consensus 115 PPfg--~~~~~~D~~fl~~a~~ 134 (197)
T d1ne2a_ 115 PPFG--SVVKHSDRAFIDKAFE 134 (197)
T ss_dssp CCC---------CHHHHHHHHH
T ss_pred cccc--hhhhhchHHHHHHHHh
Confidence 5432 1111223567665543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=4.6e-10 Score=100.09 Aligned_cols=122 Identities=15% Similarity=0.050 Sum_probs=83.0
Q ss_pred ccchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc-----ccccCCCCcEE
Q 035593 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE-----KLEKSYPDRLF 135 (269)
Q Consensus 61 l~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~-----~~~~~~~~rv~ 135 (269)
+.......|.....+.|..++||||||.|.++..++..++..+++|||+++.+++.|++..... .++ .....+.
T Consensus 200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g-~~~~~~~ 278 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-MRLNNVE 278 (406)
T ss_dssp BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-BCCCCEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhc-cccccce
Confidence 3444555565444678899999999999999999998877779999999999999998764210 000 0112233
Q ss_pred E-EEcccccc----ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 136 V-YVGNALKA----SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 136 ~-~~~D~~~~----~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+ ..+|.... ..-...|+|++..+.. .+ .....+.++.+.|||||.+++
T Consensus 279 ~~~~~~f~~~~~~d~~~~~adVV~inn~~f---~~--~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 279 FSLKKSFVDNNRVAELIPQCDVILVNNFLF---DE--DLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTTC---CH--HHHHHHHHHHTTCCTTCEEEE
T ss_pred eeeeechhhccccccccccceEEEEecccC---ch--HHHHHHHHHHHhcCCCcEEEE
Confidence 3 34444432 2234688998753321 11 135789999999999999876
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.6e-10 Score=96.55 Aligned_cols=117 Identities=13% Similarity=-0.033 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccC------------------------C
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKS------------------------Y 130 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~------------------------~ 130 (269)
..++.+|||||||+|..+..++.. ...+|+++|+++.+++.|+++......... .
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 345779999999999988776653 234899999999999999988632110000 0
Q ss_pred CCcE-EEEEccccc----c-ccCCCeeEEEEcCCCCCCCCCC-CCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 131 PDRL-FVYVGNALK----A-SLKDGFSGILVDLFSKGSLLSE-LEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 131 ~~rv-~~~~~D~~~----~-~~~~~yD~I~~d~~~~~~~~~~-l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..++ .....+... . ...++||+|++...-+ ..+.. -....+++++.+.|||||.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~-~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME-CACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH-HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHH-HhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 0001 111111111 1 3467899998632111 11111 112468999999999999999876543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=5.1e-10 Score=94.41 Aligned_cols=113 Identities=10% Similarity=-0.016 Sum_probs=71.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc----ccc---------------------CCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK----LEK---------------------SYP 131 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~----~~~---------------------~~~ 131 (269)
.+.+|||||||+|..+...+... ..+|+++|+++.|++.+++++.... |.. ...
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 57899999999998775544422 3489999999999999998864221 000 000
Q ss_pred CcEEEEEcccccc-------ccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEec
Q 035593 132 DRLFVYVGNALKA-------SLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 132 ~rv~~~~~D~~~~-------~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
....++..|...- ...++||+|++-..-+ .+++.. .-..++++++++|||||+|++...
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~-~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLE-AVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHH-HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHH-HHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 0123444555432 2345799998643211 111111 125789999999999999988543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.85 E-value=1e-08 Score=84.92 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.+..+|||||+|+|.++..|++. ..+|++||+|+.+++..++.+.- .++++++++|+..+.
T Consensus 10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~~D~l~~~ 80 (235)
T d1qama_ 10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQFK 80 (235)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGGCC
T ss_pred HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc-------ccchhhhhhhhhhcc
Confidence 445555545678999999999999999999985 56899999999999999988742 468999999999983
Q ss_pred -cCCCeeEEEEcC
Q 035593 146 -LKDGFSGILVDL 157 (269)
Q Consensus 146 -~~~~yD~I~~d~ 157 (269)
.......|+.++
T Consensus 81 ~~~~~~~~vv~NL 93 (235)
T d1qama_ 81 FPKNQSYKIFGNI 93 (235)
T ss_dssp CCSSCCCEEEEEC
T ss_pred ccccccceeeeee
Confidence 333334566543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.83 E-value=2.4e-09 Score=89.29 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+....+|||||||+|..+..+++++|+.+++++|+ |.+++.+ . ..+|++++.+|.++- ....|+++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~-------~~~ri~~~~gd~~~~--~p~~D~~~ 144 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA----P-------PLSGIEHVGGDMFAS--VPQGDAMI 144 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C-------CCTTEEEEECCTTTC--CCCEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc----C-------CCCCeEEecCCcccc--cccceEEE
Confidence 44568999999999999999999999999999999 6665421 1 146899999998653 33569998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+-..-+.. +. -.....+++++++|+|||.+++.-
T Consensus 145 l~~vLh~~-~d-e~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 145 LKAVCHNW-SD-EKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EESSGGGS-CH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EehhhhhC-CH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 74322211 11 113578999999999999887754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.78 E-value=8.1e-09 Score=82.25 Aligned_cols=107 Identities=16% Similarity=0.026 Sum_probs=80.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~ 152 (269)
...+|||+-||+|+++.+++.+ ...+|+.||.|+..++..++++..-. ..+....++..|+.++ ....+||+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~---~~~~~~~~~~~d~~~~l~~~~~~~~fDl 118 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLK---CSSEQAEVINQSSLDFLKQPQNQPHFDV 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTT---CCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhc---ccccccccccccccccccccccCCcccE
Confidence 5679999999999999999984 35599999999999999999864211 0134688888888775 23557999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHh--hccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQ--CLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~--~L~pgG~l~~~~~~ 192 (269)
||+|++-.. . ...+.+..+.+ .|+++|++++....
T Consensus 119 IFlDPPY~~----~-~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 119 VFLDPPFHF----N-LAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp EEECCCSSS----C-HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred EEechhHhh----h-hHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 999964221 1 13467777654 69999999997643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.71 E-value=9.1e-09 Score=85.70 Aligned_cols=96 Identities=15% Similarity=0.255 Sum_probs=71.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
..+|||||||+|..+..+++++|+.++++.|+ |.+++.+ +. .+|++++.+|+.+- ...+|++++--
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~-------~~rv~~~~gD~f~~--~p~aD~~~l~~ 146 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SG-------SNNLTYVGGDMFTS--IPNADAVLLKY 146 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CC-------BTTEEEEECCTTTC--CCCCSEEEEES
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cc-------cCceEEEecCcccC--CCCCcEEEEEe
Confidence 57899999999999999999999999999999 6665432 21 46999999998753 34689998743
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCC---cEEEEE
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKG---GRIMVN 189 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pg---G~l~~~ 189 (269)
.-+.. + .-....++++++++|+|| |.+++.
T Consensus 147 vLHdw-~-d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 147 ILHNW-T-DKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp CGGGS-C-HHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred ecccC-C-hHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 22211 0 011247999999999998 555554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=2.8e-08 Score=87.62 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=86.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccccc----------CCCCcEEEEEcccccc--
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEK----------SYPDRLFVYVGNALKA-- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~----------~~~~rv~~~~~D~~~~-- 144 (269)
.+.+|||..||+|..+...+...+..+|+++|+|+..++.+++++.++.... .....+.+.+.|+..+
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 6789999999999999866655666799999999999999999875542110 1134578888998876
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...+.||+|.+|.|.. ...|++.+.+.++.||+|.+...
T Consensus 125 ~~~~~fDvIDiDPfGs--------~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDPFGS--------PMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECCSSC--------CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCCCCC--------cHHHHHHHHHHhccCCEEEEEec
Confidence 5667899999999865 36799999999999999998764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.65 E-value=6.1e-08 Score=83.78 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=82.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC-----CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLY-----PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~-----p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
++.+|||.|||+|.+...+.++. +..+++++|+|+.++++|+..+.+. .....+..+|........+||
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~fD 190 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ------RQKMTLLHQDGLANLLVDPVD 190 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH------TCCCEEEESCTTSCCCCCCEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh------hhhhhhhcccccccccccccc
Confidence 46789999999999998887542 3458999999999999999876543 245778888877666677999
Q ss_pred EEEEcCCCCCCC------------C-CC-CCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 152 GILVDLFSKGSL------------L-SE-LEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 152 ~I~~d~~~~~~~------------~-~~-l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+|+.+++-.... . .. ....-|++.+.+.|+|||.+++-+...
T Consensus 191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 999986532100 0 00 011358999999999999988876544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.64 E-value=3e-09 Score=88.70 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=72.1
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA- 144 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~- 144 (269)
.+.++....+.+..+|||||||+|.++..|++. +.+|++||+|+.+++.+++.+.. .++++++++|+.++
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~-------~~n~~ii~~D~l~~~ 88 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDILQFQ 88 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCTTTT
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh-------ccchhhhhhhhhccc
Confidence 344544435567889999999999999999985 56999999999999988877652 36899999999998
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
.....++.|+.++ |.+..+.=.+..+..
T Consensus 89 ~~~~~~~~vv~NL------PY~Ist~il~~~l~~ 116 (245)
T d1yuba_ 89 FPNKQRYKIVGNI------PYHLSTQIIKKVVFE 116 (245)
T ss_dssp CCCSSEEEEEEEC------CSSSCHHHHHHHHHH
T ss_pred cccceeeeEeeee------ehhhhHHHHHHHhhh
Confidence 4445666777653 334445444444433
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.64 E-value=1.7e-08 Score=83.95 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
....+|||||||+|..+..+++++|+.+++++|+- .+++.++ ..+|++++.+|.++-.+ ..|++++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~-----------~~~r~~~~~~d~~~~~P--~ad~~~l 145 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP-HVIEDAP-----------SYPGVEHVGGDMFVSIP--KADAVFM 145 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECT-TTTTTCC-----------CCTTEEEEECCTTTCCC--CCSCEEC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccH-Hhhhhcc-----------cCCceEEecccccccCC--CcceEEE
Confidence 34678999999999999999999999999999994 4443211 24689999999865422 3455553
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
-..-+.. +.-....++++++++|+|||.+++.-
T Consensus 146 ~~vlh~~--~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 146 KWICHDW--SDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp SSSSTTS--CHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred EEEeecC--CHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 2111111 11123589999999999999887753
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=2.2e-07 Score=73.56 Aligned_cols=127 Identities=17% Similarity=0.120 Sum_probs=92.5
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
..+.+..+||||||+.|+++..+.+..+ ...|.++|+.| ..+ -+.+.++.+|..+.
T Consensus 18 ~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-----------~~~-----i~~~~~~~~d~~~~~~~~~~~ 81 (180)
T d1ej0a_ 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----------MDP-----IVGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----------CCC-----CTTEEEEESCTTSHHHHHHHH
T ss_pred CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-----------ccc-----cCCceEeecccccchhhhhhh
Confidence 3467888999999999999999887654 57999999876 111 35689999998763
Q ss_pred --ccCCCeeEEEEcCCCCCCCCC---CC----CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHH
Q 035593 145 --SLKDGFSGILVDLFSKGSLLS---EL----EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAM 215 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~~~~~~~---~l----~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (269)
....++|+|++|......-.. +. .....+.-+.+.|++||.+++=++... ....++..|
T Consensus 82 ~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~------------~~~~l~~~l 149 (180)
T d1ej0a_ 82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE------------GFDEYLREI 149 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST------------THHHHHHHH
T ss_pred hhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc------------cHHHHHHHH
Confidence 245789999999654321111 11 113556677899999999999887532 255788899
Q ss_pred HHHhcCceEEEEc
Q 035593 216 HKVFGKKLYVLSL 228 (269)
Q Consensus 216 ~~~F~~~v~~~~~ 228 (269)
+..|. .|..++.
T Consensus 150 ~~~F~-~V~~~KP 161 (180)
T d1ej0a_ 150 RSLFT-KVKVRKP 161 (180)
T ss_dssp HHHEE-EEEEECC
T ss_pred HhhcC-EEEEECC
Confidence 99995 7777753
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.2e-07 Score=76.60 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=86.2
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHh---cCccccccCCCCcEEEEEcccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF---FALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~---~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
.+.+..++.+ ++.+|+|||+|+|.=+.-++-.+|+.+++.||.+..=+...+.- +++ .+++++++.+.
T Consensus 55 ~DSl~~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L--------~nv~v~~~R~E 125 (207)
T d1jsxa_ 55 LDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL--------ENIEPVQSRVE 125 (207)
T ss_dssp HHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--------SSEEEEECCTT
T ss_pred cchHhhhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC--------cceeeeccchh
Confidence 3334333333 56799999999998888888778999999999999877666543 343 46999999999
Q ss_pred ccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 143 KASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 143 ~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++....+||+|++=++.+ ...+++-+...++++|.+++--..
T Consensus 126 ~~~~~~~fD~V~sRA~~~--------~~~ll~~~~~~l~~~g~~~~~KG~ 167 (207)
T d1jsxa_ 126 EFPSEPPFDGVISRAFAS--------LNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp TSCCCSCEEEEECSCSSS--------HHHHHHHHTTSEEEEEEEEEEESS
T ss_pred hhccccccceehhhhhcC--------HHHHHHHHHHhcCCCcEEEEECCC
Confidence 886677899999766644 468999999999999999886643
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.56 E-value=1.3e-07 Score=76.62 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=80.7
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
.+.|+.+....++.+|||.|||+|.++..+.+..+ ...++++|+|+..+++ ..+..++++|....
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~--------------~~~~~~~~~~~~~~ 73 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL--------------PPWAEGILADFLLW 73 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC--------------CTTEEEEESCGGGC
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh--------------cccceeeeeehhcc
Confidence 44555443344678999999999999988876655 5689999999865322 23578888998877
Q ss_pred ccCCCeeEEEEcCCCCCCC------------------------CCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSL------------------------LSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~------------------------~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
....+||+|+.+.+-.... .... ....|++.+.+.|++||.+++-+.+.
T Consensus 74 ~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 74 EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 6678999999885432100 0000 12468899999999999998877543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=5.8e-07 Score=78.34 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
..+..+|||+-||.|.++..|++ ...+|++||++++.++.|+++...+. -.+++++.+|..+. ....+
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~--~~~~V~gvE~~~~ai~~A~~na~~n~-----i~n~~~~~~~~~~~~~~~~~~~~~ 282 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLAT--QAASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHENLEEDVTKQPWAKNG 282 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHT--TSSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCTTSCCSSSGGGTTC
T ss_pred cCCCceEEEecccccccchhccc--cccEEEeccCcHHHHHHHHHhHHhcc-----cccceeeecchhhhhhhhhhhhcc
Confidence 44678999999999999999987 35699999999999999999876554 45799999998875 23567
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
||+|++|.+-.. ..+.++.+.+. +|.-++.+.+
T Consensus 283 ~d~vilDPPR~G-------~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 283 FDKVLLDPARAG-------AAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp CSEEEECCCTTC-------CHHHHHHHHHH-CCSEEEEEES
T ss_pred CceEEeCCCCcc-------HHHHHHHHHHc-CCCEEEEEeC
Confidence 999999976543 23567766654 6665555555
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.52 E-value=1.1e-07 Score=78.39 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=67.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHH----CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccC
Q 035593 77 PPGPIGILGFGAGSAARLILDL----YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLK 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~----~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~ 147 (269)
+|++||+||++.|..+.+++.. .++.+|+++|+++.....+.. ..++++++.+|..+. ...
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~----------~~~~I~~i~gDs~~~~~~~~l~~ 149 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----------DMENITLHQGDCSDLTTFEHLRE 149 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----------GCTTEEEEECCSSCSGGGGGGSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc----------cccceeeeecccccHHHHHHHHh
Confidence 5889999999999888766543 257899999999854322111 146899999998754 234
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+|+|++|.... ..+. ..++ .+...|++||++++.-
T Consensus 150 ~~~dlIfID~~H~---~~~v-~~~~--~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 150 MAHPLIFIDNAHA---NTFN-IMKW--AVDHLLEEGDYFIIED 186 (232)
T ss_dssp SCSSEEEEESSCS---SHHH-HHHH--HHHHTCCTTCEEEECS
T ss_pred cCCCEEEEcCCcc---hHHH-HHHH--HHhcccCcCCEEEEEc
Confidence 4689999996422 1110 1122 2457999999999854
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.49 E-value=5.4e-07 Score=71.30 Aligned_cols=108 Identities=28% Similarity=0.265 Sum_probs=83.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------ccCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~~~~ 148 (269)
..+...++|..+|+|..+..+++. +.+|+++|+||++++.|++.. .+++.+++++..++ ...+
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~---------~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH---------LPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC---------CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc---------ccceeEeehHHHHHHHHHHHcCCC
Confidence 457889999999999999999984 679999999999999998753 36899999998876 2346
Q ss_pred CeeEEEEcCCCCCCC---CC-CC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 149 GFSGILVDLFSKGSL---LS-EL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~---~~-~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+|.|+.|+--.... +. .+ .....+....+.|++||.+++..+..
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 899999997322100 10 11 12346888899999999999988754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.45 E-value=1.2e-07 Score=77.93 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=86.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHH--HHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSV--IKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~--~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.+.|..+|+|||||.|..+..++...+...+.++++--.. .....+.++ -.-+++...+......+++.|
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~--------~ni~~~~~~~dv~~l~~~~~D 134 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYG--------WNLVRLQSGVDVFFIPPERCD 134 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTT--------GGGEEEECSCCTTTSCCCCCS
T ss_pred CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccc--------cccccchhhhhHHhcCCCcCC
Confidence 5678889999999999999999986556688888872110 000000011 112454444443335678999
Q ss_pred EEEEcCCCCCCCC--CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC
Q 035593 152 GILVDLFSKGSLL--SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK 221 (269)
Q Consensus 152 ~I~~d~~~~~~~~--~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 221 (269)
+|++|+......+ .+.-+.+.++.+.+.|+|||-|++-++.++. +-..+.+..|+..|+.
T Consensus 135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~----------~~v~e~le~lq~~fgg 196 (257)
T d2p41a1 135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM----------SSVIEKMEALQRKHGG 196 (257)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS----------HHHHHHHHHHHHHHCC
T ss_pred EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC----------hHHHHHHHHHHHHhCC
Confidence 9999985432111 1223457888888999999999999987652 2356778889999974
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=1.9e-07 Score=77.74 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=57.1
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
.+.|+....+.+...|||||+|.|.++..|++. ..+|++||+|+.+++..++.+.. .++++++.+|+..+
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-------~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGGGC
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhh-------ccchhHHhhhhhhh
Confidence 344543334557889999999999999999984 56899999999999999886642 35899999999987
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.38 E-value=1e-06 Score=70.34 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=66.3
Q ss_pred CCCcEEEEcCcccH----HHHHHHHHC----CCceEEEEECChHHHHHHHHh------------------cCcccccc--
Q 035593 77 PPGPIGILGFGAGS----AARLILDLY----PEAVIHGWELDPSVIKVAREF------------------FALEKLEK-- 128 (269)
Q Consensus 77 ~~~~VL~iG~G~G~----~~~~l~~~~----p~~~v~~vEidp~~~~~a~~~------------------~~~~~~~~-- 128 (269)
++.+|+.+|||+|. ++..+.+.. ...+|++.|||+.+++.|++- |.......
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 46799999999997 445555432 245899999999999999843 21000000
Q ss_pred ------CCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEE
Q 035593 129 ------SYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 129 ------~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~ 188 (269)
.....+++...+.... ...++||+|++= .+.-.+. ..+.++.++++|+|||+|++
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CR-----NVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCR-----NVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEEC-----SSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEee-----hhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0001233333333322 234689999972 1111121 25899999999999999886
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=8.4e-07 Score=74.77 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=64.6
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.+...||+||+|.|.++..|++. +.+|++||+|+.+++..++.+.... ...+++++.+|+..+.
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~----~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP----VASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEESCTTTSC
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhc----cccchhhhHHHHhhhh
Confidence 344443334567889999999999999999986 4699999999999999998875321 1358999999998874
Q ss_pred cCCCeeEEEEcC
Q 035593 146 LKDGFSGILVDL 157 (269)
Q Consensus 146 ~~~~yD~I~~d~ 157 (269)
.+ .++.|+.++
T Consensus 84 ~~-~~~~vV~NL 94 (278)
T d1zq9a1 84 LP-FFDTCVANL 94 (278)
T ss_dssp CC-CCSEEEEEC
T ss_pred hh-hhhhhhcch
Confidence 33 345677653
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.29 E-value=4.1e-06 Score=71.70 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=88.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
..+..+|||+++|.|+=+..++.... ...|+++|+++.-++..++.+.-.. -.++.++..|+..+ .....||.
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-----~~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCSEEEESSCGGGGGGGCCCEEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-----hhccccccccccccccccccccE
Confidence 35788999999999999888887655 6799999999999988887653211 34688888998887 56778999
Q ss_pred EEEcCCCCC-CCC---CC----C----------CcHHHHHHHHhhccCCcEEEEEecCCCc
Q 035593 153 ILVDLFSKG-SLL---SE----L----------EDPNTWEKLRQCLRKGGRIMVNVGGSCV 195 (269)
Q Consensus 153 I~~d~~~~~-~~~---~~----l----------~~~e~~~~~~~~L~pgG~l~~~~~~~~~ 195 (269)
|++|++-.. +.. +. . ...+.+..+.+.|||||.++....+-.+
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 999986442 211 10 1 1247788899999999999998887654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.28 E-value=8.3e-06 Score=66.92 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=80.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHH---HhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAR---EFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~---~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+..+++|||+|+|.=+.-++-.+|+.+++.||.+..=+...+ +.+++ .+++++++.+..+ ...++
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L--------~n~~i~~~R~E~~~~~~~~~~~ 141 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL--------ENTTFCHDRAETFGQRKDVRES 141 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC--------SSEEEEESCHHHHTTCTTTTTC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC--------CCcEEEeehhhhcccccccccc
Confidence 467999999999988888887789999999999987665544 44554 3689999988876 23468
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
||+|++=++.+ ...+++-+...++++|.+++.-..
T Consensus 142 ~D~v~sRAva~--------l~~ll~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 142 YDIVTARAVAR--------LSVLSELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp EEEEEEECCSC--------HHHHHHHHGGGEEEEEEEEEEECC
T ss_pred ceEEEEhhhhC--------HHHHHHHHhhhcccCCEEEEECCC
Confidence 99999877654 468999999999999999886644
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=3.2e-06 Score=71.37 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=84.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~ 152 (269)
..+..+|||+++|.|+=+.+++....+..|+++|+++.-++..++.+.--. -..+.+...|.... ....+||.
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g-----~~~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTTCTHHHHTTCCEEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc-----ccceeeeccccccchhcccccccE
Confidence 346889999999999999999987778899999999999988887753211 12344444444332 45678999
Q ss_pred EEEcCCCCCC-CC---CC----C----------CcHHHHHHHHhhccCCcEEEEEecCCCc
Q 035593 153 ILVDLFSKGS-LL---SE----L----------EDPNTWEKLRQCLRKGGRIMVNVGGSCV 195 (269)
Q Consensus 153 I~~d~~~~~~-~~---~~----l----------~~~e~~~~~~~~L~pgG~l~~~~~~~~~ 195 (269)
|++|++-+.. +. +. . ...++++.+.+.|+|||.++....+..+
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 9999865421 10 10 0 1357888899999999999998887754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.4e-05 Score=67.69 Aligned_cols=130 Identities=14% Similarity=0.091 Sum_probs=88.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~y 150 (269)
.+..+|||+++|.|+=+.+++... +..+|+++|+++.-++..++++.... -.++.+...|+..+ ...++|
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-----~~~~~~~~~d~~~~~~~~~~~~~f 167 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCCELAEEDFLAVSPSDPRYHEV 167 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGGSCTTCGGGTTE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-----ccceeeeehhhhhhccccccccee
Confidence 467899999999999888887654 46799999999999998888764221 35699999999887 223679
Q ss_pred eEEEEcCCCCCC-C----CC--------CC-------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHH
Q 035593 151 SGILVDLFSKGS-L----LS--------EL-------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEA 210 (269)
Q Consensus 151 D~I~~d~~~~~~-~----~~--------~l-------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 210 (269)
|.|++|++-+.. + +. .. .....+..+. .|+|||.++....+-.+. -...
T Consensus 168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~----------ENe~ 236 (293)
T d2b9ea1 168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE----------ENED 236 (293)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG----------GTHH
T ss_pred eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh----------HhHH
Confidence 999999764421 1 10 00 0123334444 579999999888776531 1234
Q ss_pred HHHHHHHHhcC
Q 035593 211 TLKAMHKVFGK 221 (269)
Q Consensus 211 ~~~~l~~~F~~ 221 (269)
+++.+-+..+.
T Consensus 237 vV~~~L~~~~~ 247 (293)
T d2b9ea1 237 VVRDALQQNPG 247 (293)
T ss_dssp HHHHHHTTSTT
T ss_pred HHHHHHHhCCC
Confidence 55555555543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.16 E-value=2.8e-06 Score=75.72 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-------------CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-------------EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-------------~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
.+..+|+|-.||+|.+...+.++.. ...+.++|+++.+..+|+-++-+... ......+..+|..
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~---~~~~~~i~~~d~l 237 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI---GTDRSPIVCEDSL 237 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC---CSSCCSEEECCTT
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC---ccccceeecCchh
Confidence 3578999999999999988776432 13599999999999999987643321 1345677888887
Q ss_pred ccccCCCeeEEEEcCCCCCCCCC-------------CCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 143 KASLKDGFSGILVDLFSKGSLLS-------------ELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 143 ~~~~~~~yD~I~~d~~~~~~~~~-------------~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
......+||+|+.+++-...... .-....|++.+.+.|++||.+++-+..
T Consensus 238 ~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 238 EKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp TSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred hhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 76667799999998644311100 001136999999999999998887743
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=5e-05 Score=59.23 Aligned_cols=99 Identities=20% Similarity=0.164 Sum_probs=67.3
Q ss_pred cCCCCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--cccccc---
Q 035593 71 TLPPILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALKA--- 144 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~~--- 144 (269)
....+.+..+||++|+| .|.++..+++++...+|+++|.+++-.+.|++. +.. ..+.. .|..+.
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~---------~vi~~~~~~~~~~~~~ 91 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GAD---------LTLNRRETSVEERRKA 91 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TCS---------EEEETTTSCHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc-cce---------EEEeccccchHHHHHH
Confidence 34456778999999998 477788888875334899999999999999875 321 11111 122111
Q ss_pred ----ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 ----SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ----~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+||-... ....++.+.+.|++||.+++-
T Consensus 92 i~~~~~~~g~Dvvid~vG----------~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 92 IMDITHGRGADFILEATG----------DSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHTTTSCEEEEEECSS----------CTTHHHHHHHHEEEEEEEEEC
T ss_pred HHHhhCCCCceEEeecCC----------chhHHHHHHHHhcCCCEEEEE
Confidence 23456999884322 134678889999999998764
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.71 E-value=7.5e-05 Score=57.47 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
+|.+|++||+| .|..+...++. -+++|+++|.+++.++..+..++. +++....+-... ..-...|+||
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~-lGA~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~~~~aDivI 100 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVG-LGAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLLI 100 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhh-CCCEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHhhccCcEEE
Confidence 58999999999 56666666664 488999999999999988877642 355555554444 3345789999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+.-+....|.+.+++. .+.+|||.++ +.+
T Consensus 101 ~aalipG~~aP~lIt~~m----v~~Mk~GSVI-VDv 131 (168)
T d1pjca1 101 GAVLVPGRRAPILVPASL----VEQMRTGSVI-VDV 131 (168)
T ss_dssp ECCCCTTSSCCCCBCHHH----HTTSCTTCEE-EET
T ss_pred EeeecCCcccCeeecHHH----HhhcCCCcEE-EEe
Confidence 877655556678877654 4578886665 454
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.68 E-value=0.00013 Score=56.57 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=67.4
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc----cc
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK----AS 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~----~~ 145 (269)
.+.|..+||++|||+ |.++..+++.....+|+++|.+++-.+.|++. +.. +++.- +..+ ..
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l-Ga~----------~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY-GAT----------DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH-TCS----------EEECGGGSCHHHHHHHHT
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh-Ccc----------ccccccchhHHHHHHHHh
Confidence 567899999999986 78888888854334899999999999999874 321 11211 1111 13
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
....+|+||-... ..+.++.+.+.|+|+|.+++--
T Consensus 93 ~g~G~D~vid~~g----------~~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 93 NGKGVDRVIMAGG----------GSETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTSCEEEEEECSS----------CTTHHHHHHHHEEEEEEEEECC
T ss_pred hccCcceEEEccC----------CHHHHHHHHHHHhcCCEEEEEe
Confidence 3456999884332 1357788889999999998743
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=3.9e-05 Score=69.98 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=78.8
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC------------------CceEEEEECChHHHHHHHHhcCcccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYP------------------EAVIHGWELDPSVIKVAREFFALEKL 126 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p------------------~~~v~~vEidp~~~~~a~~~~~~~~~ 126 (269)
-.+.|+.+....+..+|+|-.||+|.+...+.++.. ...+.++|+++.+.++|+-++-+...
T Consensus 152 Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 152 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 344554332223567999999999999977665421 12689999999999999977643221
Q ss_pred ccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCC---------CCCC-CcHHHHHHHHhhccCCcEEEEEec
Q 035593 127 EKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSL---------LSEL-EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 127 ~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~---------~~~l-~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.......-.+..++.... ....+||+|+.+++-.... ++.- ...-|++.+.+.|++||++++-+.
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 000001122333443322 3457899999986433111 1111 113599999999999999988774
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.63 E-value=0.00025 Score=55.96 Aligned_cols=118 Identities=17% Similarity=0.088 Sum_probs=78.2
Q ss_pred CcccchHHHHHhcCCCCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE
Q 035593 59 RSLTNTYFDAFATLPPILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY 137 (269)
Q Consensus 59 ~~l~~~y~~~~~~~~~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~ 137 (269)
+.+...|+-. ....+.+..+||++|||+ |.++..+++.....+|+++|.+++-++.|+++-. -.++
T Consensus 9 d~~~ta~~a~--~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-----------~~~~ 75 (195)
T d1kola2 9 DILPTGYHGA--VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-----------EIAD 75 (195)
T ss_dssp THHHHHHHHH--HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-----------EEEE
T ss_pred cHHHHHHHHH--HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-----------cEEE
Confidence 3455567642 223577899999999997 6677777777666799999999999999988621 1222
Q ss_pred E---cccccc----ccCCCeeEEEEcCCCCCC--CC----CCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 138 V---GNALKA----SLKDGFSGILVDLFSKGS--LL----SELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 138 ~---~D~~~~----~~~~~yD~I~~d~~~~~~--~~----~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
. .|..+. .....+|+++- +..... .+ ......+.++.+.+.++|+|.+++--
T Consensus 76 ~~~~~~~~~~i~~~t~g~g~D~vid-~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 76 LSLDTPLHEQIAALLGEPEVDCAVD-AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp TTSSSCHHHHHHHHHSSSCEEEEEE-CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred eCCCcCHHHHHHHHhCCCCcEEEEE-CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 1 121111 34567999884 322111 11 11224689999999999999998753
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.59 E-value=0.00037 Score=53.75 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=66.6
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------cc
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------SL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~~ 146 (269)
.+.|..+||++|+|+ |.++..+++.....+|.++|.+++-++.|++. +.. +++.-+-.++ ..
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-Ga~----------~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GAT----------HVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCS----------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-CCe----------EEEeCCCcCHHHHHHHHc
Confidence 466889999999974 44556666665566889999999999999875 321 2232222222 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++.+|+|+-..- ..+.++.+.+.++|+|.+++-
T Consensus 94 ~gg~D~vid~~G----------~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 94 DGGVNFALESTG----------SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TSCEEEEEECSC----------CHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCCcEEEEcCC----------cHHHHHHHHhcccCceEEEEE
Confidence 458999984321 367899999999999998864
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=4.5e-05 Score=65.29 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=50.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
...|||||.|.|.++..|++.....+++++|+|+...+..++.+. +.+++++.+|+..+
T Consensus 44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--------GSPLQILKRDPYDW 102 (322)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--------TSSCEEECSCTTCH
T ss_pred CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--------CCCcEEEeCchhhc
Confidence 567999999999999999986333589999999999999888764 35799999999865
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=3.7e-05 Score=59.29 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=64.4
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCe
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~y 150 (269)
.+.|..+||++|+| .|.++..+++. .+++|+++|.+++-++.|++. +.. ..+...+-.++ ...+.+
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~-~G~~vi~~~~~~~k~~~a~~l-Ga~---------~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKA-MGAETYVISRSSRKREDAMKM-GAD---------HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESSSTTHHHHHHH-TCS---------EEEEGGGTSCHHHHSCSCE
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhh-ccccccccccchhHHHHhhcc-CCc---------EEeeccchHHHHHhhhccc
Confidence 46689999999998 66777777775 478999999999999999875 321 11111111222 345689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+........ ..+..+.+.|+++|.+++-
T Consensus 93 d~vi~~~~~~~~--------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 93 DLIVVCASSLTD--------IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEEEECCSCSTT--------CCTTTGGGGEEEEEEEEEC
T ss_pred ceEEEEecCCcc--------chHHHHHHHhhccceEEEe
Confidence 998853322211 1134567889999998774
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00017 Score=55.52 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=66.3
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---ccccc------
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALKA------ 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~~------ 144 (269)
+.+..+||++|+|+ |.++..+++.....+|+++|.+++-++.|++. +.. .++.. |..+.
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~-Ga~----------~~~~~~~~~~~~~~~~~~~ 92 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GAD----------LVLQISKESPQEIARKVEG 92 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCS----------EEEECSSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh-CCc----------ccccccccccccccccccc
Confidence 56788999999984 55556666665444899999999999999875 321 11111 11111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.....+|+|+- +.. ....++.+.+.+++||.+++-..
T Consensus 93 ~~g~g~Dvvid-~~G---------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 93 QLGCKPEVTIE-CTG---------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHTSCCSEEEE-CSC---------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred cCCCCceEEEe-ccC---------CchhHHHHHHHhcCCCEEEEEec
Confidence 23567999874 322 36789999999999999987543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.56 E-value=0.00053 Score=52.35 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc----cc-----
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL----KA----- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~----~~----- 144 (269)
+.+..+||++|+| .|.++..+++.. +++|+++|.+++-++.|++... ...+...+.. ..
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga----------~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA----------DVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC----------SEEEECCTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCC----------cEEEeccccccccchhhhhhh
Confidence 5678999999988 566777777764 6899999999999999998642 1222211111 11
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.....+|+|+- +.. ....++.+.+.|+++|.+++.-.
T Consensus 93 ~~~g~g~D~vid-~~g---------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 93 SAIGDLPNVTID-CSG---------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp HHSSSCCSEEEE-CSC---------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred cccccCCceeee-cCC---------ChHHHHHHHHHHhcCCceEEEec
Confidence 23567999874 322 35788999999999999987543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.53 E-value=0.00032 Score=53.97 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc--c
Q 035593 65 YFDAFATLPPILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN--A 141 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D--~ 141 (269)
|+-.....+.+.|..+||.+|+|+ |.++..+++.....+|+++|.+++-.+.+++.... +++..+ .
T Consensus 20 ~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~-----------~~i~~~~~~ 88 (172)
T d1h2ba2 20 YRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD-----------HVVDARRDP 88 (172)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS-----------EEEETTSCH
T ss_pred HHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc-----------eeecCcccH
Confidence 443332333467889999999984 44445666655567999999999999999886421 222222 1
Q ss_pred cc-c---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 142 LK-A---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 142 ~~-~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+ . .....+|+|+-... ....++...+.|+++|.+++.-
T Consensus 89 ~~~~~~~~~~~g~d~vid~~g----------~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 89 VKQVMELTRGRGVNVAMDFVG----------SQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HHHHHHHTTTCCEEEEEESSC----------CHHHHHHGGGGEEEEEEEEECC
T ss_pred HHHHHHhhCCCCceEEEEecC----------cchHHHHHHHHHhCCCEEEEEe
Confidence 11 1 34567999884322 3568899999999999998744
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.50 E-value=5.3e-05 Score=62.31 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=61.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-cc---cccCCCCcEEEEEcccccc--ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-EK---LEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-~~---~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
+.+|||.=+|.|..+..++.. +++|+++|.+|.+..+.+..+.. .. .......|++++++|+.++ ...+.||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 458999999999999999985 68999999999998777654421 00 0000013899999999998 4567899
Q ss_pred EEEEcCCCC
Q 035593 152 GILVDLFSK 160 (269)
Q Consensus 152 ~I~~d~~~~ 160 (269)
+|++|..-+
T Consensus 167 vIYlDPMFp 175 (250)
T d2oyra1 167 VVYLDPMFP 175 (250)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 999997543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.49 E-value=0.00024 Score=54.44 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=64.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++|+.|||| ++++++.|.+.....+|+++|.|++.++.|++.-.. .....+.. .......|+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-----------~~~~~~~~-~~~~~~~dlIila 69 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----------DEGTTSIA-KVEDFSPDFVMLS 69 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----------SEEESCGG-GGGGTCCSEEEEC
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-----------hhhhhhhh-hhhcccccccccc
Confidence 369999999 777888888765677999999999999999886321 11111111 1233468999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.... ...+.++.+...++++ .+++.+.+.
T Consensus 70 ~p~~-------~~~~vl~~l~~~~~~~-~ii~d~~s~ 98 (171)
T d2g5ca2 70 SPVR-------TFREIAKKLSYILSED-ATVTDQGSV 98 (171)
T ss_dssp SCHH-------HHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred CCch-------hhhhhhhhhhcccccc-ccccccccc
Confidence 4321 1467888999999875 455566543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.45 E-value=0.0009 Score=51.63 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=70.4
Q ss_pred CCCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---cccc-c-c--
Q 035593 73 PPILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNAL-K-A-- 144 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~~-~-~-- 144 (269)
..+.+..+||++|||+ |.++..+++.....+|+++|++++-.+.|++. +.. .++. .|.. . .
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~-Ga~----------~~i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GAT----------DCLNPRELDKPVQDVIT 92 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCS----------EEECGGGCSSCHHHHHH
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh-CCC----------cccCCccchhhhhhhHh
Confidence 3467889999999997 88888888876556899999999999999885 321 1121 1111 1 1
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEec
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNVG 191 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~~ 191 (269)
.....+|+++- +.. ..+.++.+.+.|+++ |.+++.-.
T Consensus 93 ~~~~~G~d~vie-~~G---------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 93 ELTAGGVDYSLD-CAG---------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp HHHTSCBSEEEE-SSC---------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred hhhcCCCcEEEE-ecc---------cchHHHHHHHHhhcCCeEEEecCC
Confidence 34568999984 322 367899999999996 99987543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.25 E-value=0.00091 Score=50.80 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=63.8
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccC
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLK 147 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~ 147 (269)
.+.|..+||++|+| .|.++..+++.. +.+|+++|.+++-++.+++. +.. +++...-.+. ...
T Consensus 24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~-Ga~----------~~i~~~~~~~~~~~~~~~ 91 (166)
T d1llua2 24 NARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL-GAS----------LTVNARQEDPVEAIQRDI 91 (166)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-TCS----------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc-Ccc----------ccccccchhHHHHHHHhh
Confidence 35688999999987 466667777765 68999999999999999875 321 2222221111 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+|.++.+.. ..+.++.+.+.|+++|.+++-
T Consensus 92 ~g~~~~i~~~~----------~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 92 GGAHGVLVTAV----------SNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SSEEEEEECCS----------CHHHHHHHHTTEEEEEEEEEC
T ss_pred cCCcccccccc----------cchHHHHHHHHhcCCcEEEEE
Confidence 34555554432 246788899999999998874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.19 E-value=0.00069 Score=51.72 Aligned_cols=95 Identities=17% Similarity=0.262 Sum_probs=65.8
Q ss_pred CCCCCCcEEEEcC-c-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 74 PILPPGPIGILGF-G-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~-G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
.+.|..+||.+|+ | .|.++..+++.....+|++++.+++-.+.+++. +.. .++..+-.++
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~-Ga~----------~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GAD----------YVINASMQDPLAEIRRI 92 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TCS----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc-CCc----------eeeccCCcCHHHHHHHH
Confidence 4668899999996 3 556666666665557999999999999999875 311 2222222222
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+.+|+|+-. .. ..+.++.+.+.|+|+|.+++-
T Consensus 93 ~~~~~~d~vid~-~g---------~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 93 TESKGVDAVIDL-NN---------SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp TTTSCEEEEEES-CC---------CHHHHTTGGGGEEEEEEEEEC
T ss_pred hhcccchhhhcc-cc---------cchHHHhhhhhcccCCEEEEe
Confidence 345679988743 21 357788889999999998765
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.18 E-value=0.0064 Score=45.81 Aligned_cols=89 Identities=21% Similarity=0.085 Sum_probs=60.5
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||+| ++.+++.|.+ .+.+|+++|.+++.++.+++.-.. .....+. ..-...|+|++..
T Consensus 2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~~~~~~a~~~~~~-----------~~~~~~~---~~~~~~DiIilav 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVERQLV-----------DEAGQDL---SLLQTAKIIFLCT 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHTTSC-----------SEEESCG---GGGTTCSEEEECS
T ss_pred EEEEEeecHHHHHHHHHHHH--CCCEEEEEECCchHHHHHHHhhcc-----------ceeeeec---ccccccccccccC
Confidence 68999999 7777888776 478999999999999988764211 0111111 2336789999854
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
... ...+.++++...|+++-++ +++.+
T Consensus 66 p~~-------~~~~vl~~l~~~l~~~~iv-~~~~s 92 (165)
T d2f1ka2 66 PIQ-------LILPTLEKLIPHLSPTAIV-TDVAS 92 (165)
T ss_dssp CHH-------HHHHHHHHHGGGSCTTCEE-EECCS
T ss_pred cHh-------hhhhhhhhhhhhcccccce-eeccc
Confidence 321 2468888888888876544 66644
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.17 E-value=0.0019 Score=49.81 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=62.0
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----c---c
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----A---S 145 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~---~ 145 (269)
.+.+...||.+|+|+ |.++..+++.....+|+++|++++-+++|++.-.. ..+...|... . .
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~----------~~in~~~~~~~~~~~~~~~ 95 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT----------ECISPKDSTKPISEVLSEM 95 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS----------EEECGGGCSSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc----------EEECccccchHHHHHHHHh
Confidence 366789999999985 45556666665557999999999999999987431 1111112111 1 3
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhc-cCCcEEEEEe
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL-RKGGRIMVNV 190 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L-~pgG~l~~~~ 190 (269)
....+|+++...- ..+.++.....+ +.+|.+++--
T Consensus 96 ~g~G~d~vi~~~g----------~~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 96 TGNNVGYTFEVIG----------HLETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp HTSCCCEEEECSC----------CHHHHHHHHTTSCTTTCEEEECS
T ss_pred ccccceEEEEeCC----------chHHHHHHHHHhhcCCeEEEEEE
Confidence 4567998885432 234555555555 5558887643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.0006 Score=52.39 Aligned_cols=94 Identities=21% Similarity=0.182 Sum_probs=66.1
Q ss_pred CCCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---cccccc---
Q 035593 73 PPILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNALKA--- 144 (269)
Q Consensus 73 ~~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~~~~--- 144 (269)
..+.|..+||+.|+ |.|..+..+++.. +++|+++..+++-.+.+++. +.. +++. .|..+.
T Consensus 24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~-Ga~----------~vi~~~~~~~~~~i~~ 91 (174)
T d1yb5a2 24 ACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN-GAH----------EVFNHREVNYIDKIKK 91 (174)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCS----------EEEETTSTTHHHHHHH
T ss_pred hCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc-Ccc----------cccccccccHHHHhhh
Confidence 34678899999996 4677777888764 78999999999888888874 321 1221 122221
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+.+|+|+- .. ..+.++...+.|+|+|.++.-
T Consensus 92 ~t~~~g~d~v~d-~~----------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 92 YVGEKGIDIIIE-ML----------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHCTTCEEEEEE-SC----------HHHHHHHHHHHEEEEEEEEEC
T ss_pred hhccCCceEEee-cc----------cHHHHHHHHhccCCCCEEEEE
Confidence 34667999884 21 246788899999999999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.09 E-value=0.001 Score=51.30 Aligned_cols=100 Identities=14% Similarity=-0.009 Sum_probs=63.4
Q ss_pred CCCCCCCcEEEEcCccc-HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc--cc---cc
Q 035593 73 PPILPPGPIGILGFGAG-SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL--KA---SL 146 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G-~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~--~~---~~ 146 (269)
..+.|..+||++|+|+. .++..+++.....+|+++|++++-++.|+++ +... -+.....|.. +. ..
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l-Ga~~-------~i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GATE-------CLNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TCSE-------EECGGGCSSCHHHHHHHHT
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc-CCcE-------EEcCCCchhHHHHHHHHhc
Confidence 35778999999999854 4445566655556999999999999999885 3210 0111112211 11 34
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccC-CcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRK-GGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p-gG~l~~~~ 190 (269)
+..+|+|+-..- ..+.++.....+++ +|.+++--
T Consensus 95 ~~G~d~vid~~g----------~~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 95 NGGVDYAVECAG----------RIETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp TSCBSEEEECSC----------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCCcEEEEcCC----------CchHHHHHHHHHHHhcCceEEEE
Confidence 567999985432 24566666666655 58877643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0018 Score=49.27 Aligned_cols=95 Identities=15% Similarity=0.242 Sum_probs=65.1
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCe
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~y 150 (269)
.+.|..+||++|+| -|.++..+++.. ++++++++.+++-.+.+++. +.. .++...-... ...+.+
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~l-Gad----------~~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL-GAD----------EVVNSRNADEMAAHLKSF 94 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH-TCS----------EEEETTCHHHHHTTTTCE
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhcc-CCc----------EEEECchhhHHHHhcCCC
Confidence 46789999999987 467777888764 77888999999988888764 311 1222111111 345679
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+++-.... ...++...+.|+++|.+++.-
T Consensus 95 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 95 DFILNTVAA----------PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEEECCSS----------CCCHHHHHTTEEEEEEEEECC
T ss_pred ceeeeeeec----------chhHHHHHHHHhcCCEEEEec
Confidence 999854322 124667788999999998753
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.86 E-value=0.0073 Score=45.79 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----c---
Q 035593 73 PPILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----A--- 144 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~--- 144 (269)
..+.|..+||+.|+| .|.++..+++......|++++.+++-.+.+++. +.. -.+...+..+ .
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l-Ga~---------~~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GAT---------ECINPQDFSKPIQEVLIE 93 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TCS---------EEECGGGCSSCHHHHHHH
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh-CCc---------EEEeCCchhhHHHHHHHH
Confidence 357789999999987 445556666665557999999999999999875 321 1111111111 1
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.....+|+|+-.. . ....++.+...+++||.+++..
T Consensus 94 ~~~~g~D~vid~~-G---------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 94 MTDGGVDYSFECI-G---------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp HTTSCBSEEEECS-C---------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred HcCCCCcEeeecC-C---------CHHHHHHHHHhhcCCceeEEEE
Confidence 2456799998432 1 3578899999999988776544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.84 E-value=0.0047 Score=44.89 Aligned_cols=88 Identities=15% Similarity=0.013 Sum_probs=57.3
Q ss_pred cEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeE
Q 035593 80 PIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSG 152 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~ 152 (269)
+|+.+|+| .+++.+++.. .+..|++||.||+.++.++..++ +.+++||+.+. ..-+..|+
T Consensus 2 ~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~-----------~~vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 2 YIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID-----------ALVINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS-----------SEEEESCTTSHHHHHHTTTTTCSE
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh-----------hhhccCcccchhhhhhcChhhhhh
Confidence 68888875 4544444432 36799999999999988776543 57899999875 23467898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
++.-..+.. ..-+.....+.+.+.-+++
T Consensus 69 vv~~t~~d~-------~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 69 YIAVTGKEE-------VNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp EEECCSCHH-------HHHHHHHHHHHTTCCCEEE
T ss_pred hcccCCcHH-------HHHHHHHHHHHcCCceEEE
Confidence 886322210 1234455566777775543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.77 E-value=0.0038 Score=47.07 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=62.6
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE---cccccc--ccC
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV---GNALKA--SLK 147 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~---~D~~~~--~~~ 147 (269)
.+.|..+||..|+|+ |..+..+++. .+.+|++++.+++-.+.+++. +.. .++. .|.... ...
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~-Ga~----------~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKEL-GAD----------LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT-TCS----------EEECTTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhc-Ccc----------eecccccchhhhhccccc
Confidence 356889999999885 4555555654 567999999999999999884 321 1111 111111 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+|.++.+.. ..+.++.+.+.|+++|.+++..
T Consensus 92 ~~~~~~v~~~~----------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 92 GGVHAAVVTAV----------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSEEEEEESSC----------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEeecC----------CHHHHHHHHHHhccCCceEecc
Confidence 34555555532 3578899999999999988754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.72 E-value=0.0019 Score=50.04 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=64.6
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-cCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-KSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-~~~~~rv~~~~~D~~~~---------- 144 (269)
||.+||+||+| .|..+...+.. -+++|+++|++++..+..+..++..-.. .......+-..+.+.+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~-lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKR-LGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 68999999999 45555555554 4889999999999999988875411000 00000111111111111
Q ss_pred ---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 ---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-...|+|+.-+.-+....|.+.+++. .+.+|||.+++ .+
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~m----v~~Mk~GSVIV-Dv 150 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEM----VTKMKPGSVII-DL 150 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHH----HTTSCTTCEEE-ET
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHH----HHhcCCCcEEE-EE
Confidence 1135789999877666556778877654 45788976664 54
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.64 E-value=0.017 Score=43.85 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=64.5
Q ss_pred CCCCCCCcEEEEcCcccH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 73 PPILPPGPIGILGFGAGS-AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
..+.|..+||++|+|++. ++..+++.....+|.+++.+++-.+.+++.-.. -.+...+..+.
T Consensus 24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~----------~~i~~~~~~~~~~~~~~~ 93 (176)
T d2jhfa2 24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT----------ECVNPQDYKKPIQEVLTE 93 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS----------EEECGGGCSSCHHHHHHH
T ss_pred hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe----------eEEecCCchhHHHHHHHH
Confidence 346788999999997544 555666666667999999999999999886421 11111222111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
...+.+|+|+-. .. ....++.+...++.+ |.+++-.
T Consensus 94 ~~~~G~D~vid~-~G---------~~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 94 MSNGGVDFSFEV-IG---------RLDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp HTTSCBSEEEEC-SC---------CHHHHHHHHHHBCTTTCEEEECS
T ss_pred HhcCCCCEEEec-CC---------chhHHHHHHHHHhcCCcceEEec
Confidence 345689998743 22 356788888888887 4555433
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0067 Score=46.20 Aligned_cols=96 Identities=16% Similarity=0.048 Sum_probs=66.2
Q ss_pred CCCCCCCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----
Q 035593 72 LPPILPPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----- 144 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----- 144 (269)
...+.|..+||..|+| .|..+..+++. .+++|++++.+++-.+.+++. +.. +++...-.++
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~-~Ga~Vi~~~~s~~k~~~~~~l-Ga~----------~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKA-LGAKLIGTVGTAQKAQSALKA-GAW----------QVINYREEDLVERLK 90 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHH-TCS----------EEEETTTSCHHHHHH
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHH-hCCeEeecccchHHHHHHHhc-CCe----------EEEECCCCCHHHHHH
Confidence 3457788999999766 46677777775 478999999999999998875 321 2222111222
Q ss_pred --ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 --SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+..+|+|+ |.-. .+.+......|+++|.+++..
T Consensus 91 ~~t~g~g~d~v~-d~~g----------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 91 EITGGKKVRVVY-DSVG----------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp HHTTTCCEEEEE-ECSC----------GGGHHHHHHTEEEEEEEEECC
T ss_pred HHhCCCCeEEEE-eCcc----------HHHHHHHHHHHhcCCeeeecc
Confidence 3466799876 4332 246788899999999887643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.56 E-value=0.0069 Score=46.26 Aligned_cols=93 Identities=20% Similarity=0.163 Sum_probs=63.5
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
.+.+..+||+.|+ |.|.++..+++.. ++++.++.-+++-.+.+++. +.. .++...-.++
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~-Ga~----------~vi~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL-GVE----------YVGDSRSVDFADEILEL 89 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT-CCS----------EEEETTCSTHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccc-ccc----------ccccCCccCHHHHHHHH
Confidence 4667889999884 4667777777754 78888888888888888864 311 2222222222
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+|+-... .+.++.+.+.|+++|.++.-
T Consensus 90 t~~~g~d~v~d~~g-----------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 90 TDGYGVDVVLNSLA-----------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTTCCEEEEEECCC-----------THHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCEEEEEeccc-----------chHHHHHHHHhcCCCEEEEE
Confidence 24568999984221 25788889999999998873
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.53 E-value=0.014 Score=44.58 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=71.9
Q ss_pred ccchHHHHH---hcCCCCCCCCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEE
Q 035593 61 LTNTYFDAF---ATLPPILPPGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLF 135 (269)
Q Consensus 61 l~~~y~~~~---~~~~~l~~~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~ 135 (269)
+.++|..+. .....+.+..+||+.|+++ |..+..+++.. +++|+++.-+++-.+.+++.-. . +
T Consensus 10 lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga-~----------~ 77 (182)
T d1v3va2 10 IGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGF-D----------A 77 (182)
T ss_dssp TSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S----------E
T ss_pred HhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhh-h----------h
Confidence 445554433 2344567889999988854 56677777764 7899999999998888887521 1 2
Q ss_pred EEEcccccc-------ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 136 VYVGNALKA-------SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 136 ~~~~D~~~~-------~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++..+-..+ ...+.+|+|+ |.- ..+.++.+.+.|+++|.+++.
T Consensus 78 vi~~~~~~~~~~~~~~~~~~Gvd~v~-D~v----------G~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 78 AFNYKTVNSLEEALKKASPDGYDCYF-DNV----------GGEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp EEETTSCSCHHHHHHHHCTTCEEEEE-ESS----------CHHHHHHHGGGEEEEEEEEEC
T ss_pred hcccccccHHHHHHHHhhcCCCceeE-Eec----------CchhhhhhhhhccCCCeEEee
Confidence 222222221 3556799988 322 247899999999999999874
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.41 E-value=0.0028 Score=48.42 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=62.4
Q ss_pred CCCCCCcEEEEcC-c-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 74 PILPPGPIGILGF-G-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~-G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
.+.|..+||+.|+ | .|..+..+++.. +++|++++.+++-.+.+++. +.. .-+-..|.... ...+.+
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l-Ga~---------~~i~~~~~~~~~~~~~g~ 92 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL-GAE---------EAATYAEVPERAKAWGGL 92 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT-TCS---------EEEEGGGHHHHHHHTTSE
T ss_pred CCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc-ccc---------eeeehhhhhhhhhccccc
Confidence 4678899999985 3 467777788764 78999999999888888764 321 11111222112 456679
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+ |+.. +.+..+.+.|+++|.++..
T Consensus 93 D~v~-d~~G-----------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 93 DLVL-EVRG-----------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEE-ECSC-----------TTHHHHHTTEEEEEEEEEC
T ss_pred cccc-cccc-----------hhHHHHHHHHhcCCcEEEE
Confidence 9987 4321 1256778899999998763
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.32 E-value=0.025 Score=42.66 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=61.0
Q ss_pred CCCCCCcEEEEcCccc-HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-cc----ccc---
Q 035593 74 PILPPGPIGILGFGAG-SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NA----LKA--- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G-~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~----~~~--- 144 (269)
.++|..+||++|+|++ ..+..+++.....+|+++|.+++-.+.|++. +.. +++.. +- .+.
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~-GAd----------~~in~~~~~~~~~~~~~~ 93 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GAT----------DFVNPNDHSEPISQVLSK 93 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCC----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc-CCc----------EEEcCCCcchhHHHHHHh
Confidence 5678899999999874 4445555656677999999999999999875 321 22211 11 111
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
.....+|+|+-.. . ....+..+...++++|..++
T Consensus 94 ~~~~G~d~vid~~-G---------~~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 94 MTNGGVDFSLECV-G---------NVGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHTSCBSEEEECS-C---------CHHHHHHHHHTBCTTTCEEE
T ss_pred hccCCcceeeeec-C---------CHHHHHHHHHHhhCCCccee
Confidence 3456799998432 1 25677777777777644433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.01 E-value=0.012 Score=42.46 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=56.2
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
++++++|+| .++..+++.. .+.+|+++|.|++.++.++.. ...++.+|+.+. ..-...|
T Consensus 1 k~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~------------~~~~~~gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 1 KQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------------ATHAVIANATEENELLSLGIRNFE 66 (134)
T ss_dssp CCEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT------------CSEEEECCTTCTTHHHHHTGGGCS
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh------------CCcceeeecccchhhhccCCcccc
Confidence 467888776 4444443322 478999999999998886543 236778998775 2235678
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+++...+.. ....+..+.+.+.+...++.-.
T Consensus 67 ~vi~~~~~~~-------~~~~~~~~~~~~~~~~~iiar~ 98 (134)
T d2hmva1 67 YVIVAIGANI-------QASTLTTLLLKELDIPNIWVKA 98 (134)
T ss_dssp EEEECCCSCH-------HHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEEEcCchH-------HhHHHHHHHHHHcCCCcEEeec
Confidence 8877544321 2234444455555666665544
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.64 E-value=0.024 Score=43.34 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc-cc---cccCC
Q 035593 75 ILPPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA-LK---ASLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~-~~---~~~~~ 148 (269)
+.+..+||+-|++ -|..+..+++. -+++|++.--+++-.+.+++. +.. ..+...+. .+ ...++
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~-~Ga~Viat~~s~~k~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~~~ 97 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAK-RGYTVEASTGKAAEHDYLRVL-GAK---------EVLAREDVMAERIRPLDKQ 97 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHH-TTCCEEEEESCTTCHHHHHHT-TCS---------EEEECC---------CCSC
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHH-cCCceEEecCchHHHHHHHhc-ccc---------eeeecchhHHHHHHHhhcc
Confidence 4457889999864 55677788876 488999999999999998875 321 11111111 11 13567
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.||+|+ |... .+.+....+.|+++|.++....
T Consensus 98 gvD~vi-d~vg----------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 98 RWAAAV-DPVG----------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp CEEEEE-ECST----------TTTHHHHHHTEEEEEEEEECSC
T ss_pred CcCEEE-EcCC----------chhHHHHHHHhCCCceEEEeec
Confidence 899887 4322 2468889999999999987543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.45 E-value=0.027 Score=42.48 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCcEEEEcCcccH--HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEE----EEEccccccccCCCee
Q 035593 78 PGPIGILGFGAGS--AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLF----VYVGNALKASLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~--~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~----~~~~D~~~~~~~~~yD 151 (269)
.++|.+||+|... ++..|.+ .+.+|+++|.+++-++..++.-...... ...... .+..|.. ..-+..|
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--e~~~~aD 74 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEG--PGLAGTAHPDLLTSDIG--LAVKDAD 74 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEES--SSCCEEECCSEEESCHH--HHHTTCS
T ss_pred CCEEEEECccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCCchhh--hhhhhhhhhhhhhhhhH--hHhcCCC
Confidence 3689999999443 3344444 4789999999999888877653211100 011111 1111111 1235689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+|++..... ...+.+++++..|+++-++++
T Consensus 75 ~iii~v~~~-------~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 75 VILIVVPAI-------HHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EEEECSCGG-------GHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEEEEchh-------HHHHHHHHhhhccCCCCEEEE
Confidence 999854322 257899999999999876654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.18 E-value=0.1 Score=39.74 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=62.0
Q ss_pred CCCCC--CcEEEEc--CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---cc
Q 035593 74 PILPP--GPIGILG--FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SL 146 (269)
Q Consensus 74 ~l~~~--~~VL~iG--~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~ 146 (269)
.+.+. ..||+.| +|-|..+..+++......|+++..+++-.....+.++... -+..-..|..+. ..
T Consensus 25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~-------vi~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 25 HISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA-------AVNYKTGNVAEQLREAC 97 (187)
T ss_dssp CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE-------EEETTSSCHHHHHHHHC
T ss_pred CCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE-------EeeccchhHHHHHHHHh
Confidence 34554 6799988 4678999999997754567777777666555555444210 111111122221 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++.+|+|+ |.. -.+.++...++|+++|.++..
T Consensus 98 ~~GvDvv~-D~v----------Gg~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 98 PGGVDVYF-DNV----------GGDISNTVISQMNENSHIILC 129 (187)
T ss_dssp TTCEEEEE-ESS----------CHHHHHHHHTTEEEEEEEEEC
T ss_pred ccCceEEE-ecC----------CchhHHHHhhhccccccEEEe
Confidence 56799997 432 146789999999999999763
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.18 E-value=0.037 Score=41.80 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=63.3
Q ss_pred CCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCe
Q 035593 77 PPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~y 150 (269)
+...||+-|+ |-|..+..+++.. +++|+++--+++-.+.+++.-. + ..+...|.... ..++.+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGa---------d-~vi~~~~~~~~~~~~~~~~gv 91 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGA---------S-EVISREDVYDGTLKALSKQQW 91 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTC---------S-EEEEHHHHCSSCCCSSCCCCE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcc---------c-ceEeccchhchhhhcccCCCc
Confidence 4567999885 4567777888764 7899999999888888877521 1 11222222111 345689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|+ |... -+.+....+.|+++|.+++.-.
T Consensus 92 d~vi-d~vg----------g~~~~~~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 92 QGAV-DPVG----------GKQLASLLSKIQYGGSVAVSGL 121 (167)
T ss_dssp EEEE-ESCC----------THHHHHHHTTEEEEEEEEECCC
T ss_pred eEEE-ecCc----------HHHHHHHHHHhccCceEEEeec
Confidence 9987 3322 3688999999999999987543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.94 E-value=0.041 Score=39.38 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=65.6
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeEE
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSGI 153 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~I 153 (269)
++|+.+|+ |..+..+.+...+..|.+||.|++..+..+.. .+.++.||+.+- ..-++.+.+
T Consensus 1 kHivI~G~--g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~------------~~~~i~Gd~~~~~~L~~a~i~~A~~v 66 (129)
T d2fy8a1 1 RHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLRS------------GANFVHGDPTRVSDLEKANVRGARAV 66 (129)
T ss_dssp CCEEEESC--CHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT------------TCEEEESCTTSHHHHHHTTCTTCSEE
T ss_pred CEEEEECC--CHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc------------CccccccccCCHHHHHHhhhhcCcEE
Confidence 35777664 67888888877777899999999988876542 378899999864 334578888
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++...+.. .--+.....+.+.|...++..+.++
T Consensus 67 i~~~~~d~-------~n~~~~~~~r~~~~~~~iia~~~~~ 99 (129)
T d2fy8a1 67 IVNLESDS-------ETIHCILGIRKIDESVRIIAEAERY 99 (129)
T ss_dssp EECCSSHH-------HHHHHHHHHHHHCSSSCEEEECSSG
T ss_pred EEeccchh-------hhHHHHHHHHHHCCCceEEEEEcCH
Confidence 87433211 2234555567789988888777543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.32 E-value=0.057 Score=41.32 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=60.7
Q ss_pred ccchHHHHHh---cCCCCCCCCcEEEEcCc---ccHHHHHHHHHCCCceEEEEE----CChHHHHHHHHhcCccccccCC
Q 035593 61 LTNTYFDAFA---TLPPILPPGPIGILGFG---AGSAARLILDLYPEAVIHGWE----LDPSVIKVAREFFALEKLEKSY 130 (269)
Q Consensus 61 l~~~y~~~~~---~~~~l~~~~~VL~iG~G---~G~~~~~l~~~~p~~~v~~vE----idp~~~~~a~~~~~~~~~~~~~ 130 (269)
+...|..+.. ....+.|..+||.+.+| .|..+..+++.. +++++++= -.++..+.+++. +..
T Consensus 9 l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~l-Gad------ 80 (189)
T d1gu7a2 9 ISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKEL-GAT------ 80 (189)
T ss_dssp CTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHH-TCS------
T ss_pred hhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhc-ccc------
Confidence 3445554432 33356677899998433 356667777764 67776663 223344444443 311
Q ss_pred CCcEEEEEc---ccccc---------ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 131 PDRLFVYVG---NALKA---------SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 131 ~~rv~~~~~---D~~~~---------~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.++.- |..++ .....+|+|+ |+. ..+.+....+.|+++|.+++.
T Consensus 81 ----~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~-D~v----------g~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 81 ----QVITEDQNNSREFGPTIKEWIKQSGGEAKLAL-NCV----------GGKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp ----EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEE-ESS----------CHHHHHHHHHTSCTTCEEEEC
T ss_pred ----EEEeccccchhHHHHHHHHHHhhccCCceEEE-ECC----------CcchhhhhhhhhcCCcEEEEE
Confidence 22222 22222 1356799987 432 245778888999999999864
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.22 E-value=0.65 Score=37.50 Aligned_cols=118 Identities=15% Similarity=0.049 Sum_probs=75.4
Q ss_pred cEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEc
Q 035593 80 PIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d 156 (269)
+||++=||.|.+...+.+. +. .+.++|+|+...+..+.+++ -+++.+|..++ ..-...|+|+..
T Consensus 2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~~-----------~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHCC-----------SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC-----------CCCccCChhhCCHhHcccccEEeec
Confidence 6999999999999888764 44 45699999999999888874 25577999888 334578999865
Q ss_pred CCCCCC-C---CCCCCc------HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 157 LFSKGS-L---LSELED------PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 157 ~~~~~~-~---~~~l~~------~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
.+-... . ...... .++++ +.+.++|.-+++=|+.+-.. ......+..++..+..
T Consensus 69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~Pk~~~lENV~~~~~------~~~~~~~~~~l~~l~~ 132 (324)
T d1dcta_ 69 PPCQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPIFFLAENVKGMMA------QRHNKAVQEFIQEFDN 132 (324)
T ss_dssp CCCTTTSSSSCCCCSSSHHHHHHHHHHH-HHHHHCCSEEEEEEEGGGGS------GGGHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccchHHHHHH-HHHhhCCceeeccccccccc------cccchhhHHHHhHHhh
Confidence 332211 1 111111 13333 45678998777778854321 0113345555555554
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=94.21 E-value=0.13 Score=41.84 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=78.3
Q ss_pred EcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeEEEEcCC
Q 035593 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSGILVDLF 158 (269)
Q Consensus 84 iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~I~~d~~ 158 (269)
.=.|+-.++..+++ +.-++..+|+.|+-.+..+++|.. +++++++..|+.+. .+.++=-+|++|..
T Consensus 89 ~YPGSP~ia~~llR--~~Drl~l~ELHp~e~~~L~~~~~~-------~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPp 159 (271)
T d2oo3a1 89 YYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 159 (271)
T ss_dssp EEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred cCCCCHHHHHHhCC--CCCceEEeecCHHHHHHHHHHhcc-------CCCceEEcCchHHHHHhhCCCCCCceEEEecCC
Confidence 44677788877776 788999999999999998888752 57999999999985 34556669999843
Q ss_pred CCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 159 SKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 159 ~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
-. ..... ...+.+.++.++- |.|+++++..-. + ......+.+.|++.=+
T Consensus 160 YE--~k~ey~~v~~~l~~a~kr~-~~g~~~iWYPi~---------~-~~~~~~~~~~l~~~~~ 209 (271)
T d2oo3a1 160 YE--RKEEYKEIPYAIKNAYSKF-STGLYCVWYPVV---------N-KAWTEQFLRKMREISS 209 (271)
T ss_dssp CC--STTHHHHHHHHHHHHHHHC-TTSEEEEEEEES---------S-HHHHHHHHHHHHHHCS
T ss_pred cC--CHHHHHHHHHHHHHHHHhC-CCceEEEEeecc---------C-cHHHHHHHHHHHhcCc
Confidence 21 11111 1124444444443 679999987433 1 3356777888877654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.16 Score=37.04 Aligned_cols=97 Identities=11% Similarity=-0.062 Sum_probs=59.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHH-HHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIK-VAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~-~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
..+|+.+|+| ..+..+.+.. .+.++++||.||+... .+.+.. ...+.++.||+.+. ..-++
T Consensus 3 knHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~---------~~~~~vi~Gd~~d~~~L~~a~i~~ 71 (153)
T d1id1a_ 3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---------GDNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---------CTTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh---------cCCcEEEEccCcchHHHHHhcccc
Confidence 3478998886 3333333321 3779999999997543 333322 23589999999875 34467
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.|.|++...+.. .--......+.+.|.-.+++-+.+
T Consensus 72 a~~vi~~~~~d~-------~n~~~~~~~r~~~~~~~iia~~~~ 107 (153)
T d1id1a_ 72 CRAILALSDNDA-------DNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp CSEEEECSSCHH-------HHHHHHHHHHHHTSSSCEEEECSS
T ss_pred CCEEEEccccHH-------HHHHHHHHHHHhCCCCceEEEEcC
Confidence 888887433210 123334445667787777776644
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=93.96 E-value=0.66 Score=33.60 Aligned_cols=87 Identities=11% Similarity=0.086 Sum_probs=55.8
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||+|. ..++..|++. ...+|.+.+.+++.++..++.++. +.. .|... -...|+||+..
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~-~~~~i~v~~r~~~~~~~l~~~~~~-----------~~~-~~~~~---v~~~Div~lav 65 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGAEKRERLEKELGV-----------ETS-ATLPE---LHSDDVLILAV 65 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSHHHHHHHHHHTCC-----------EEE-SSCCC---CCTTSEEEECS
T ss_pred EEEEEcCcHHHHHHHHHHHHC-CCCcEEEEeCChhHHHHhhhhccc-----------ccc-ccccc---ccccceEEEec
Confidence 688999983 3445556654 246999999999988776665442 211 12211 23579999743
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+..+..+.+-|++.+.+++.+...
T Consensus 66 -----------kP~~~~~v~~~l~~~~~~viS~~ag 90 (152)
T d1yqga2 66 -----------KPQDMEAACKNIRTNGALVLSVAAG 90 (152)
T ss_dssp -----------CHHHHHHHHTTCCCTTCEEEECCTT
T ss_pred -----------CHHHHHHhHHHHhhcccEEeecccC
Confidence 1345666777778878888876543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.63 E-value=0.0091 Score=44.55 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=52.4
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
||++||+|. +.++..|++ .+.+|+.++.+++-.+..+. .... .......+..+. ......+|+|++..
T Consensus 2 kI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~~~~~~~~~-~~~~-----~~~~~~~~~~~~--~~~~~~~D~iii~v 71 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQPYCSVNL-VETD-----GSIFNESLTAND--PDFLATSDLLLVTL 71 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCSEEEEEE-ECTT-----SCEEEEEEEESC--HHHHHTCSEEEECS
T ss_pred EEEEECcCHHHHHHHHHHHH--CCCceEEEEcCHHHhhhhcc-ccCC-----ccccccccccch--hhhhcccceEEEee
Confidence 799999984 344445544 46799999988742111000 0000 000111111111 12335799999854
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
-.. .+++.++.+...++++..++.-
T Consensus 72 ka~-------~~~~~~~~l~~~~~~~~~Iv~~ 96 (167)
T d1ks9a2 72 KAW-------QVSDAVKSLASTLPVTTPILLI 96 (167)
T ss_dssp CGG-------GHHHHHHHHHTTSCTTSCEEEE
T ss_pred ccc-------chHHHHHhhccccCcccEEeec
Confidence 332 2678999999999988766553
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.40 E-value=0.17 Score=38.18 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=58.4
Q ss_pred cEEEEcCcc-cHHHHHHHHHCCCceEEEE-ECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGA-GSAARLILDLYPEAVIHGW-ELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~-G~~~~~l~~~~p~~~v~~v-Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||||. |..-....+..++.++++| |.+++-.+...+.++.+. ..+ +..|..+.......|+|++..
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~ll~~~~iD~v~I~t 74 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPE-------STK-IHGSYESLLEDPEIDALYVPL 74 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCT-------TCE-EESSHHHHHHCTTCCEEEECC
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccccc-------cee-ecCcHHHhhhccccceeeecc
Confidence 789999984 3322223344678888865 999987776666665432 222 345665553455789998754
Q ss_pred CCCCCC----------------CCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 158 FSKGSL----------------LSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 158 ~~~~~~----------------~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
...... -|...+.+=.+++.+..+..|..++
T Consensus 75 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~ 121 (184)
T d1ydwa1 75 PTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM 121 (184)
T ss_dssp CGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred cchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEE
Confidence 322110 0222345556666666666665543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.62 Score=36.71 Aligned_cols=72 Identities=8% Similarity=-0.059 Sum_probs=50.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------cc
Q 035593 76 LPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SL 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~ 146 (269)
...+++|+.|+++| +++.+++++ .+.+|..++.+++-++...+..+ .+..+..|..+. ..
T Consensus 5 L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~----------~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVRECP----------GIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----------TCEEEECCTTCHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC----------CCeEEEEeCCCHHHHHHHHHH
Confidence 36788999997655 343333332 47899999999988877665532 367777888764 34
Q ss_pred CCCeeEEEEcCC
Q 035593 147 KDGFSGILVDLF 158 (269)
Q Consensus 147 ~~~yD~I~~d~~ 158 (269)
-++.|+++.++.
T Consensus 74 ~g~iDilVnnAg 85 (244)
T d1pr9a_ 74 VGPVDLLVNNAA 85 (244)
T ss_dssp CCCCCEEEECCC
T ss_pred hCCceEEEeccc
Confidence 468999987654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=92.74 E-value=0.36 Score=36.08 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=60.6
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.+|-.||+| +..+++.|++ .+.+|++.|.+++-++...+..... .... -.....+. ..-...|.|++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~-------~~~~-~a~~~~~~~~~~~~~~~ii~ 72 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMND--HGFVVCAFNRTVSKVDDFLANEAKG-------TKVL-GAHSLEEMVSKLKKPRRIIL 72 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSTHHHHHHHHTTTTT-------SSCE-ECSSHHHHHHHBCSSCEEEE
T ss_pred CcEEEEeEhHHHHHHHHHHHH--CCCeEEEEcCCHHHHHHHHHhcccc-------cccc-chhhhhhhhhhhcccceEEE
Confidence 578999998 4556666666 4779999999999887766543211 0111 11122222 33456788887
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+.+.. ...+.+..+...|++|- +++++.+.
T Consensus 73 ~~~~~~------~v~~v~~~l~~~~~~g~-iiid~sT~ 103 (176)
T d2pgda2 73 LVKAGQ------AVDNFIEKLVPLLDIGD-IIIDGGNS 103 (176)
T ss_dssp CSCTTH------HHHHHHHHHHHHCCTTC-EEEECSCC
T ss_pred ecCchH------HHHHHHHHHHhccccCc-EEEecCcc
Confidence 655432 13567888888998855 55566544
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=92.67 E-value=1.1 Score=36.41 Aligned_cols=121 Identities=13% Similarity=-0.027 Sum_probs=76.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.+.+||++=||.|.+...|.+. +. .+.++|+|+..++..+.+++. ..++|..++ ..-...|+|
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~------------~~~~Di~~~~~~~~~~~Dll 75 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGE------------KPEGDITQVNEKTIPDHDIL 75 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSC------------CCBSCGGGSCGGGSCCCSEE
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCC------------CCcCchhcCchhhcceeeee
Confidence 3578999999999999988763 44 567799999999999988741 124788887 334579999
Q ss_pred EEcCCCCC----CCC-----CC-CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 154 LVDLFSKG----SLL-----SE-LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 154 ~~d~~~~~----~~~-----~~-l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
+...+-.. +.. +. -.-.++++ +.+.++|.=+++=|+.+-... .....+..+++.|++.
T Consensus 76 ~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~kP~~~~lENV~~~~~~------~~~~~~~~i~~~l~~l 143 (327)
T d2c7pa1 76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIAR-IVREKKPKVVFMENVKNFASH------DNGNTLEVVKNTMNEL 143 (327)
T ss_dssp EEECCCTTTCTTSCCCGGGSTTSCHHHHHHH-HHHHHCCSEEEEEEEGGGGTG------GGGHHHHHHHHHHHHT
T ss_pred ecccccchhhhhhhhcCCcccchhHHHHHHH-HHhccCCcEEecccchhhhhh------ccchhhHHhhhHHHhc
Confidence 86543221 110 00 01124443 446678976666688654210 1133456666666654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.48 E-value=0.076 Score=43.37 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=40.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+...|||.=||+|+.+.++.+ -+.+.+++|++++.+++|++++.
T Consensus 250 ~gdiVlDpF~GSGTT~~AA~~--lgR~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 250 PDDLVVDIFGGSNTTGLVAER--ESRKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp TTCEEEETTCTTCHHHHHHHH--TTCEEEEEESCHHHHHHHHGGGS
T ss_pred CCCEEEecCCCCcHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHHH
Confidence 578999999999999999887 47899999999999999999874
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.086 Score=43.60 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~ 152 (269)
|.+|+++-||.|.+...+.+..-+. -+.++|+++..++..+.+++ ...++.+|..++ ......|+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~----------~~~~~~~di~~~~~~~~~~~~~Dl 71 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLEEFDRLSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC----------CCCcccCchhhCCHhHcCCCCccE
Confidence 5689999999999988887642222 36799999999999888763 245677888876 12346899
Q ss_pred EEEcC
Q 035593 153 ILVDL 157 (269)
Q Consensus 153 I~~d~ 157 (269)
++...
T Consensus 72 l~ggp 76 (343)
T d1g55a_ 72 ILMSP 76 (343)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 98654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.25 E-value=0.83 Score=36.29 Aligned_cols=75 Identities=9% Similarity=-0.025 Sum_probs=51.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..++||+.|+..| +++.+++.+ .+++|..++.+++-++.+.+.+... ...+.++..|..+.
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~------~~~~~~~~~D~s~~~~~~~~~~~~ 77 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK------GLNVEGSVCDLLSRTERDKLMQTV 77 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEeecCCHHHHHHHHHHH
Confidence 5788999998655 443333332 4789999999998877776655321 35688889998764
Q ss_pred --ccCCCeeEEEEcCC
Q 035593 145 --SLKDGFSGILVDLF 158 (269)
Q Consensus 145 --~~~~~yD~I~~d~~ 158 (269)
...+..|+++..+.
T Consensus 78 ~~~~~g~idilinnag 93 (258)
T d1ae1a_ 78 AHVFDGKLNILVNNAG 93 (258)
T ss_dssp HHHTTSCCCEEEECCC
T ss_pred HHHhCCCcEEEecccc
Confidence 12356888887654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.59 Score=37.14 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=52.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
+.+.+|+.|+++|. +..+++.+ .+++|..++.+++-++.+.+.+.... ...++..+..|..+-
T Consensus 9 k~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 9 RDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEEccCCCHHHHHHHHHHH
Confidence 46788888877553 33343333 48899999999988777665543111 124788899998863
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++.
T Consensus 84 ~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 84 RSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHCCCSEEEECCC
T ss_pred HHhcCCCCEEEeccc
Confidence 23467999998764
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=91.86 E-value=0.2 Score=37.09 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=43.2
Q ss_pred cEEEEcCcccH--HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGAGS--AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~G~--~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||||.-+ .-..+++..++..+.++|.+++..+...+.++.+. +..|..+... ...|+|++..
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~ll~-~~iD~V~I~t 70 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSA-----------TCTDYRDVLQ-YGVDAVMIHA 70 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCC-----------CCSSTTGGGG-GCCSEEEECS
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccccc-----------ccccHHHhcc-cccceecccc
Confidence 78999998532 12233444678888999999998888877765321 1234444422 3589988754
Q ss_pred C
Q 035593 158 F 158 (269)
Q Consensus 158 ~ 158 (269)
.
T Consensus 71 p 71 (167)
T d1xeaa1 71 A 71 (167)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.81 E-value=0.72 Score=36.42 Aligned_cols=72 Identities=10% Similarity=-0.104 Sum_probs=50.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++.+ .+++|..++.+++-++...+.++ .++.++..|..+.
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~ 74 (244)
T d1nffa_ 5 TGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQPAQWKAAVDTA 74 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---------CcceEEEeecCCHHHHHHHHHHH
Confidence 4677888887766 343333322 47899999999998887776653 3578888998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 75 ~~~~g~idilinnAG 89 (244)
T d1nffa_ 75 VTAFGGLHVLVNNAG 89 (244)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCeEEEECCc
Confidence 12357899997753
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=91.80 E-value=0.61 Score=37.12 Aligned_cols=71 Identities=13% Similarity=-0.042 Sum_probs=50.2
Q ss_pred CCCcEEEEcCccc---HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGAG---SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G---~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..+.+|+-|++.| .+++.+++ .+++|..++.+++-++...+.++ .++.++..|..+.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~--~Ga~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~ 72 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVA--AGARVVLADVLDEEGAATARELG---------DAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTTG---------GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhC---------CceEEEEcccCCHHHHHHHHHH
Confidence 4678888888766 33444444 47899999999987776665542 3688999998764
Q ss_pred --ccCCCeeEEEEcCC
Q 035593 145 --SLKDGFSGILVDLF 158 (269)
Q Consensus 145 --~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++.
T Consensus 73 ~~~~~g~iDilVnnAg 88 (254)
T d1hdca_ 73 AREEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCccEEEecCc
Confidence 12357899887753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.78 E-value=0.12 Score=42.18 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=43.8
Q ss_pred cEEEEEcccccc---ccCCCeeEEEEcCCCCCCCC---CCC-------CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 133 RLFVYVGNALKA---SLKDGFSGILVDLFSKGSLL---SEL-------EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 133 rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~---~~l-------~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.=++++||+.+. -++++.|+|+.|.+-..... ... ...+.++.+++.|+|+|.+++++...
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 85 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 85 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccch
Confidence 459999999986 46789999999964221110 011 02467889999999999999998654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.69 E-value=0.11 Score=40.91 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=39.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFF 121 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~ 121 (269)
+...|||-=+|+|+.+.++.+ -+-+.+++|++++.+++|++++
T Consensus 212 ~gd~VlDpF~GSGTT~~aa~~--~~R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 212 PNDLVLDCFMGSGTTAIVAKK--LGRNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp TTCEEEESSCTTCHHHHHHHH--TTCEEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEECCCCchHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHH
Confidence 577899999999999999887 4789999999999999999875
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.33 E-value=0.68 Score=36.74 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=50.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++.+ .+++|..++.+++-++...+.++ .++..+..|..+.
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---------~~~~~~~~Dvt~~~~v~~~~~~~ 73 (256)
T d1k2wa_ 4 DGKTALITGSARG-IGRAFAEAYVREGARVAIADINLEAARATAAEIG---------PAACAIALDVTDQASIDRCVAEL 73 (256)
T ss_dssp TTEEEEEETCSSH-HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CceEEEEeeCCCHHHHHHHHHHH
Confidence 4677888887655 333343332 47899999999988776666543 4688889998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++.
T Consensus 74 ~~~~g~iDilVnnAg 88 (256)
T d1k2wa_ 74 LDRWGSIDILVNNAA 88 (256)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCccEEEeecc
Confidence 12368999998754
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.31 E-value=1 Score=35.80 Aligned_cols=74 Identities=11% Similarity=-0.006 Sum_probs=52.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|++.| +++.+++++ .+++|..++.+++-++.+.+.+.. ..++.++..|..+.
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCCHHHHHHHHHHH
Confidence 4678888887655 444444433 478999999999988877776642 24688889998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 77 ~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 77 IAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCcceeccccc
Confidence 12357899998764
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=91.11 E-value=0.82 Score=34.25 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=61.6
Q ss_pred CCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 78 PGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
..+||+.|+ |-|..+..+++.. +++|+++--+++-.+.+++. +. -.++.-+-..+ .....+|.
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~l-Ga----------d~vi~~~~~~~~~~l~~~~~~~ 99 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSL-GA----------SRVLPRDEFAESRPLEKQVWAG 99 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH-TE----------EEEEEGGGSSSCCSSCCCCEEE
T ss_pred CCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhh-cc----------ccccccccHHHHHHHHhhcCCe
Confidence 458888775 3556777888764 88999999999998888764 32 12232222222 23456888
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+ |.- -.+.+....+.|+++|.++..-
T Consensus 100 vv-D~V----------gg~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 100 AI-DTV----------GDKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp EE-ESS----------CHHHHHHHHHTEEEEEEEEECC
T ss_pred eE-EEc----------chHHHHHHHHHhccccceEeec
Confidence 75 543 2468899999999999998753
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.96 E-value=0.2 Score=38.31 Aligned_cols=67 Identities=24% Similarity=0.216 Sum_probs=43.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD 151 (269)
-++||++|+ +|.++..+.++. .+.+|+++..++.-+ ... ...+++++.+|..+. ..-...|
T Consensus 3 ~kkIlV~Ga-tG~iG~~v~~~Ll~~g~~V~~~~R~~~~~------~~~------~~~~~~~~~gD~~d~~~l~~al~~~d 69 (205)
T d1hdoa_ 3 VKKIAIFGA-TGQTGLTTLAQAVQAGYEVTVLVRDSSRL------PSE------GPRPAHVVVGDVLQAADVDKTVAGQD 69 (205)
T ss_dssp CCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCGGGS------CSS------SCCCSEEEESCTTSHHHHHHHHTTCS
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCcCEEEEEEcChhhc------ccc------cccccccccccccchhhHHHHhcCCC
Confidence 368998884 555555444322 367999999887421 111 146799999999886 2234579
Q ss_pred EEEEcC
Q 035593 152 GILVDL 157 (269)
Q Consensus 152 ~I~~d~ 157 (269)
+|+..+
T Consensus 70 ~vi~~~ 75 (205)
T d1hdoa_ 70 AVIVLL 75 (205)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 988754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.75 E-value=0.78 Score=36.28 Aligned_cols=76 Identities=5% Similarity=-0.157 Sum_probs=50.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++++ .+++|..++.+++-++.+.+.+.... ..++..+..|..+.
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4678888887655 344333332 47899999999887765554432111 34688899998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 78 ~~~~g~iDiLVnnAG 92 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAAG 92 (251)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 12357999998753
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=1.3 Score=35.88 Aligned_cols=82 Identities=12% Similarity=0.005 Sum_probs=53.9
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcC--ccccccCCCCcEEEEEcccccc----
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFA--LEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~--~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
|-....+.+|+-|++.| +++.+++.+ .+++|..++.+++-++.+.+.+. ... ....++..+..|..+.
T Consensus 7 ~g~L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~---~~~~~~~~~~~Dvs~~~~v~ 82 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP---TKQARVIPIQCNIRNEEEVN 82 (297)
T ss_dssp TTTTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT---TCCCCEEEEECCTTCHHHHH
T ss_pred CCCCCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc---ccCceEEEEeccCCCHHHHH
Confidence 33456788888887655 444444333 47899999999887766554432 111 1245799999998864
Q ss_pred -------ccCCCeeEEEEcCC
Q 035593 145 -------SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -------~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++.
T Consensus 83 ~~~~~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 83 NLVKSTLDTFGKINFLVNNGG 103 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhCCeEEEEeecc
Confidence 12357899998764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.55 E-value=0.1 Score=41.26 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=39.1
Q ss_pred EEEEcccccc---ccCCCeeEEEEcCCCCCCCC--CCC--------CcHHHHHHHHhhccCCcEEEEEe
Q 035593 135 FVYVGNALKA---SLKDGFSGILVDLFSKGSLL--SEL--------EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 135 ~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~--~~l--------~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+++++|+.+. .++++.|+|+.|.+-..... ... ...++++++++.|+|+|.++++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 5899999987 45788999999864221110 011 12357788999999999887765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.50 E-value=0.15 Score=40.72 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=40.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+...|||-=+|+|+.+.++.+. +-+.+++|+||+..++|++++.
T Consensus 207 ~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 207 PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHH
T ss_pred CCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHH
Confidence 5778999999999999998884 7799999999999999999874
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.46 E-value=1.1 Score=35.03 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=51.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|++.| ++..+++.+ .+++|...+.+.+-++...+.++ .++.++..|..+.
T Consensus 4 ~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dls~~~~i~~~~~~i 73 (241)
T d2a4ka1 4 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVAALE---------AEAIAVVADVSDPKAVEAVFAEA 73 (241)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC---------SSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CceEEEEecCCCHHHHHHHHHHH
Confidence 4678888887754 444444333 47899999999988776666542 4688899998864
Q ss_pred -ccCCCeeEEEEcCCC
Q 035593 145 -SLKDGFSGILVDLFS 159 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~ 159 (269)
..-++.|+++.++..
T Consensus 74 ~~~~g~iDiLinnAg~ 89 (241)
T d2a4ka1 74 LEEFGRLHGVAHFAGV 89 (241)
T ss_dssp HHHHSCCCEEEEGGGG
T ss_pred HHHhCCccEecccccc
Confidence 123689999987643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.44 E-value=1.5 Score=34.50 Aligned_cols=75 Identities=11% Similarity=-0.005 Sum_probs=52.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|++.| +++.+++.+ .+++|..++.+++-++.+.+.+... ..++..+..|..+.
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~------g~~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF------GYESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4666777776554 666665544 3789999999999887777665321 35789999999864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++.
T Consensus 82 ~~~~g~iDilvnnag 96 (251)
T d2c07a1 82 LTEHKNVDILVNNAG 96 (251)
T ss_dssp HHHCSCCCEEEECCC
T ss_pred HHhcCCceeeeeccc
Confidence 23468999987653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.42 E-value=0.11 Score=41.68 Aligned_cols=61 Identities=18% Similarity=0.039 Sum_probs=42.7
Q ss_pred cEEEEEcccccc---ccCCCeeEEEEcCCCCCCCCC---C----CCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 133 RLFVYVGNALKA---SLKDGFSGILVDLFSKGSLLS---E----LEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 133 rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~~---~----l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+-.++++|..+. .++++.|+|+.|.+-...... + -...+.++++++.|+|+|.++++....
T Consensus 4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~ 74 (279)
T d1eg2a_ 4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 74 (279)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcc
Confidence 346778999987 467899999998642211100 0 012567888999999999999988644
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=90.42 E-value=0.14 Score=41.07 Aligned_cols=111 Identities=14% Similarity=-0.021 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHC----C------------------------------------CceEEEEECChHHHH
Q 035593 76 LPPGPIGILGFGAGSAARLILDLY----P------------------------------------EAVIHGWELDPSVIK 115 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~----p------------------------------------~~~v~~vEidp~~~~ 115 (269)
..+..++|--||+|+++.+.+-.. | ..++.+.|+|+.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 346789999999999987655311 1 135678888998888
Q ss_pred HHHH---hcCccccccCCCCcEEEEEcccccc------ccCCCeeEEEEcCCCCCCCCC--CCC---cHHHHHHHHhhcc
Q 035593 116 VARE---FFALEKLEKSYPDRLFVYVGNALKA------SLKDGFSGILVDLFSKGSLLS--ELE---DPNTWEKLRQCLR 181 (269)
Q Consensus 116 ~a~~---~~~~~~~~~~~~~rv~~~~~D~~~~------~~~~~yD~I~~d~~~~~~~~~--~l~---~~e~~~~~~~~L~ 181 (269)
.|++ +..... ....+++...|+++. ..+..+++|+++.+-...... ... ..+++..+++.|.
T Consensus 129 ~A~~~r~n~~~Ag----l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 129 AARRLRERLTAEG----GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHHHTT----SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcC----CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence 8853 332111 135689999998764 245678999988643322211 111 1356666777776
Q ss_pred CCcEEEEEe
Q 035593 182 KGGRIMVNV 190 (269)
Q Consensus 182 pgG~l~~~~ 190 (269)
..-++++..
T Consensus 205 ~~s~~~it~ 213 (249)
T d1o9ga_ 205 AHAVIAVTD 213 (249)
T ss_dssp TTCEEEEEE
T ss_pred CCcEEEEeC
Confidence 656666543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.33 E-value=1 Score=35.64 Aligned_cols=75 Identities=8% Similarity=-0.074 Sum_probs=52.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|+++| +++.+++.+ .+++|..++.+++-++.+.+.+... ..++..+..|..+.
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREK------GVEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4677888887655 333333322 4789999999999888777765321 35789999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 77 ~~~~g~iDilVnnaG 91 (260)
T d1zema1 77 VRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCeehhhhc
Confidence 12367899997653
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.77 Score=36.24 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=51.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.||+-|++.| +++.+++.+ .+++|..++.+++-++...+..... ..++..+..|..+.
T Consensus 7 Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~------~~~~~~~~~Dvs~~~~v~~~~~~i~ 79 (244)
T d1yb1a_ 7 GEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------GAKVHTFVVDCSNREDIYSSAKKVK 79 (244)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 455666666554 444444433 4889999999998877666655321 46799999999875
Q ss_pred ccCCCeeEEEEcCCCC
Q 035593 145 SLKDGFSGILVDLFSK 160 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~ 160 (269)
...+..|+++.++...
T Consensus 80 ~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 80 AEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHTCCCSEEEECCCCC
T ss_pred HHcCCCceeEeecccc
Confidence 1356789998775433
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.23 E-value=0.81 Score=36.19 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=49.6
Q ss_pred CcE-EEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 79 GPI-GILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 79 ~~V-L~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
+|| |+-|++ +.+++.+++++ .+++|..++.+++-++...+.+... ..++..+..|..+.
T Consensus 1 KKValITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~------g~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (255)
T d1gega_ 1 KKVALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------GGHAVAVKVDVSDRDQVFAAVEQAR 73 (255)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 455 666755 44555555443 4789999999999887776655321 35789999999874
Q ss_pred ccCCCeeEEEEcC
Q 035593 145 SLKDGFSGILVDL 157 (269)
Q Consensus 145 ~~~~~yD~I~~d~ 157 (269)
..-++.|+++.++
T Consensus 74 ~~~g~iDilVnnA 86 (255)
T d1gega_ 74 KTLGGFDVIVNNA 86 (255)
T ss_dssp HHTTCCCEEEECC
T ss_pred HHhCCccEEEecc
Confidence 1346899999775
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=90.14 E-value=1.4 Score=34.92 Aligned_cols=75 Identities=7% Similarity=-0.082 Sum_probs=51.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++++ .+++|..++.+++-++.+.+.+.-. ..++..+..|..+.
T Consensus 7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------GFKVEASVCDLSSRSERQELMNTV 79 (259)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEeeCCCHHHHHHHHHHH
Confidence 4678888887655 344444332 4789999999998887776655321 35788899998763
Q ss_pred -cc-CCCeeEEEEcCC
Q 035593 145 -SL-KDGFSGILVDLF 158 (269)
Q Consensus 145 -~~-~~~yD~I~~d~~ 158 (269)
.. ..+.|+++.++-
T Consensus 80 ~~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNAG 95 (259)
T ss_dssp HHHTTTCCCEEEECCC
T ss_pred HHHhCCCceEEEECCc
Confidence 11 347899997653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.91 E-value=0.45 Score=34.51 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=30.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEE--ECChHHHHHHHHhc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGW--ELDPSVIKVAREFF 121 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~v--Eidp~~~~~a~~~~ 121 (269)
..++||+||+|.-...+.-.=.--+++|++| |++|++.+.+.+..
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~~~~~~~ 58 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFI 58 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHHCGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHhcc
Confidence 5899999999864443322211126777777 78899988876543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=89.75 E-value=1.2 Score=35.78 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=50.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.+|+-|+++| +++.+++++ .+++|+.++.+++-++.+.+.+.... ..++.++..|..+.
T Consensus 25 gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-----g~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 25 GKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-----CCceEEEEecccChHHHHHHhhhhh
Confidence 577888887655 444444432 47899999999987665554432111 35688888998764
Q ss_pred ccCCCeeEEEEcCCC
Q 035593 145 SLKDGFSGILVDLFS 159 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~ 159 (269)
...++.|+++..+..
T Consensus 99 ~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 99 KVAGHPNIVINNAAG 113 (294)
T ss_dssp HHTCSCSEEEECCCC
T ss_pred hhccccchhhhhhhh
Confidence 235788999876543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.73 E-value=1.5 Score=34.56 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=50.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +.+.+++.+ .+++|..++.+++-++...+.. +++..+..|..+.
T Consensus 5 ~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~----------~~~~~~~~Dvs~~~~v~~~~~~~ 73 (250)
T d1ydea1 5 AGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------PGAVFILCDVTQEDDVKTLVSET 73 (250)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEccCCCHHHHHHHHHHH
Confidence 4678888887665 444444333 4789999999999887776653 2478888998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 74 ~~~~g~iDilVnnAG 88 (250)
T d1ydea1 74 IRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhcCCCCEEEeccc
Confidence 12367899998764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.51 E-value=1.9 Score=33.70 Aligned_cols=71 Identities=8% Similarity=-0.126 Sum_probs=48.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------ccC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SLK 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~ 147 (269)
..+++|+-|++.| +++.+++.+ .+++|..++.+++-++...+.. +.+..+..|..+. ..-
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~ 72 (242)
T d1cyda_ 4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGDWDATEKALGGI 72 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHHHHc
Confidence 4678888887665 444444332 4789999999988776655543 2467778888764 234
Q ss_pred CCeeEEEEcCC
Q 035593 148 DGFSGILVDLF 158 (269)
Q Consensus 148 ~~yD~I~~d~~ 158 (269)
++.|+++.++-
T Consensus 73 g~iDilVnnAg 83 (242)
T d1cyda_ 73 GPVDLLVNNAA 83 (242)
T ss_dssp CCCSEEEECCC
T ss_pred CCCeEEEECCc
Confidence 68899997753
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.44 E-value=1.5 Score=34.52 Aligned_cols=74 Identities=12% Similarity=-0.036 Sum_probs=52.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++ +.+++.+++.+ .+++|..++.+++-++.+.+.+.. ..++.++..|..+.
T Consensus 5 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 5 DGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 35667777755 44554444433 478999999999998888777642 34799999999864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++.
T Consensus 77 ~~~~G~iDiLVnnAg 91 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAG 91 (251)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHhCCceEEEeccc
Confidence 12367899987753
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.39 E-value=0.98 Score=35.71 Aligned_cols=72 Identities=7% Similarity=-0.018 Sum_probs=49.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++.+ .+++|..++.+++-++...+.++ .+..++..|..+.
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~~ 74 (253)
T d1hxha_ 5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG---------ERSMFVRHDVSSEADWTLVMAAV 74 (253)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---------TTEEEECCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CCeEEEEeecCCHHHHHHHHHHH
Confidence 3566777776554 444444433 47899999999988877666553 3577788888764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 75 ~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 75 QRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHCSCCEEEECCC
T ss_pred HHHhCCCCeEEeccc
Confidence 12367899998763
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=89.32 E-value=0.76 Score=31.86 Aligned_cols=46 Identities=24% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEEC--------ChHHHHHHHHhc
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWEL--------DPSVIKVAREFF 121 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEi--------dp~~~~~a~~~~ 121 (269)
+..|++|+.||+|. |.-....+. ..+.+|+.+|. |+++.+..++.+
T Consensus 19 l~~p~~v~IiGgG~iG~E~A~~l~-~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l 73 (117)
T d1onfa2 19 IKESKKIGIVGSGYIAVELINVIK-RLGIDSYIFARGNRILRKFDESVINVLENDM 73 (117)
T ss_dssp CCCCSEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCchHHHHHHHHHH-hccccceeeehhccccccccHHHHHHHHHHH
Confidence 44589999999883 333333333 24889999996 677777777765
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=89.07 E-value=0.69 Score=34.86 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=28.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHH
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSV 113 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~ 113 (269)
.+++|++||+|...+..+..-...+.+|+.+|-++..
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 4799999999977666555444468899999987643
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.67 E-value=1.7 Score=34.00 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=48.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++.+ .+++|..++.+++-++.+.+.. +.+.+..|..+.
T Consensus 4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~~ 71 (242)
T d1ulsa_ 4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-----------GAHPVVMDVADPASVERGFAEA 71 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----------TCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----------CCeEEEEecCCHHHHHHHHHHH
Confidence 4677888887665 444444433 4789999999998887776643 256677888764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 72 ~~~~g~iDilVnnAG 86 (242)
T d1ulsa_ 72 LAHLGRLDGVVHYAG 86 (242)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHhcCCceEEEECCc
Confidence 12357999987653
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.43 E-value=1 Score=35.88 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=50.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 76 LPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
...+++|+.|+++| +++.+++.+ .+++|..++.+++-++.+.+..... ...++..+..|....
T Consensus 12 L~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~ 85 (269)
T d1xu9a_ 12 LQGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL-----GAASAHYIAGTMEDMTFAEQFVAQ 85 (269)
T ss_dssp GTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----TCSEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh-----hcccchhhhhhhhhHHHHHHHHHH
Confidence 35788988888766 444444333 4789999999999887776543211 134677777777653
Q ss_pred --ccCCCeeEEEEcCC
Q 035593 145 --SLKDGFSGILVDLF 158 (269)
Q Consensus 145 --~~~~~yD~I~~d~~ 158 (269)
...+..|+++.++.
T Consensus 86 ~~~~~g~~~~li~nag 101 (269)
T d1xu9a_ 86 AGKLMGGLDMLILNHI 101 (269)
T ss_dssp HHHHHTSCSEEEECCC
T ss_pred HHHHhCCccccccccc
Confidence 13457888887643
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=88.34 E-value=0.67 Score=31.80 Aligned_cols=90 Identities=19% Similarity=0.094 Sum_probs=53.0
Q ss_pred CCCcEEEEcCcccHHH--HHHHHHCCCceEEEEEC--ChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAA--RLILDLYPEAVIHGWEL--DPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~--~~l~~~~p~~~v~~vEi--dp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
..++||.+|+|.=... +.+++ .+++|++++. +++....+. ..+++++...... ..-..+++
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~~~~~~~~~~------------~~~i~~~~~~~~~-~dl~~~~l 75 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFIPQFTVWAN------------EGMLTLVEGPFDE-TLLDSCWL 75 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCCHHHHHHHT------------TTSCEEEESSCCG-GGGTTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCChHHHHHHh------------cCCceeeccCCCH-HHhCCCcE
Confidence 4889999998854433 23333 3677777754 444443332 2356666554432 22346788
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+.... ..+.=+.+.+..++.|++ +|+..
T Consensus 76 v~~at~----------d~~~n~~i~~~a~~~~il-VNv~D 104 (113)
T d1pjqa1 76 AIAATD----------DDTVNQRVSDAAESRRIF-CNVVD 104 (113)
T ss_dssp EEECCS----------CHHHHHHHHHHHHHTTCE-EEETT
T ss_pred EeecCC----------CHHHHHHHHHHHHHcCCE-EEeCC
Confidence 886432 245556677777777888 56654
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=88.32 E-value=0.35 Score=36.66 Aligned_cols=74 Identities=9% Similarity=-0.061 Sum_probs=48.4
Q ss_pred CCCCCcEEEEcCcccH---HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccC
Q 035593 75 ILPPGPIGILGFGAGS---AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~---~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~ 147 (269)
-...++||+.|+++|. +++.+++ .+.+|+.++.+++-.+...+.+... .++.+...|..+. ..-
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAG--EGAEVVLCGRKLDKAQAAADSVNKR-------FKVNVTAAETADDASRAEAV 90 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHH-------HTCCCEEEECCSHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHh--hccchhhcccchHHHHHHHHHHHhc-------cchhhhhhhcccHHHHHHHh
Confidence 3468999999976542 2334433 4789999999998887777665422 2344555565543 334
Q ss_pred CCeeEEEEcC
Q 035593 148 DGFSGILVDL 157 (269)
Q Consensus 148 ~~yD~I~~d~ 157 (269)
+..|+++..+
T Consensus 91 ~~iDilin~A 100 (191)
T d1luaa1 91 KGAHFVFTAG 100 (191)
T ss_dssp TTCSEEEECC
T ss_pred cCcCeeeecC
Confidence 6789998754
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.31 E-value=0.96 Score=35.81 Aligned_cols=76 Identities=12% Similarity=-0.046 Sum_probs=49.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++++ .+++|..++.+++-++.+.+...... ..++..+..|..+.
T Consensus 8 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~ 81 (260)
T d1h5qa_ 8 VNKTIIVTGGNRG-IGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNTDIVTKTIQQI 81 (260)
T ss_dssp TTEEEEEETTTSH-HHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 4678888886654 444444433 47899999999876554443321110 34688999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++.
T Consensus 82 ~~~~g~iDilVnnAg 96 (260)
T d1h5qa_ 82 DADLGPISGLIANAG 96 (260)
T ss_dssp HHHSCSEEEEEECCC
T ss_pred HHHhCCCcEeccccc
Confidence 23468999987753
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.04 E-value=1.4 Score=34.93 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=50.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|+++| +++.+++.+ .+++|..++.+++-++.+.+.+... ..++..+..|..+.
T Consensus 7 kgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 7 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK------GFQVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEeccCCCHHHHHHHHHHH
Confidence 4677888887655 344433332 4789999999998877766655321 35789999998753
Q ss_pred -c-cCCCeeEEEEcCC
Q 035593 145 -S-LKDGFSGILVDLF 158 (269)
Q Consensus 145 -~-~~~~yD~I~~d~~ 158 (269)
. ..++.|+++.++-
T Consensus 80 ~~~~~g~idilvnnAG 95 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLG 95 (259)
T ss_dssp HHHHTTCCSEEEEECC
T ss_pred HHHhCCCccccccccc
Confidence 1 1367899998753
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=87.71 E-value=0.95 Score=35.83 Aligned_cols=76 Identities=12% Similarity=-0.047 Sum_probs=47.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECC-hHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELD-PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEid-p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..+.+|+-|++.| +++.+++++ .+++|..++.+ ++-++.+.+.+.... ..++..+..|..+.
T Consensus 3 ~gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 3 KGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-----GVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-----TSCEEEECCCTTSHHHHHHHHHH
T ss_pred CcCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHH
Confidence 4567777776655 344433332 47899999986 555555544432111 34788999999864
Q ss_pred --ccCCCeeEEEEcCC
Q 035593 145 --SLKDGFSGILVDLF 158 (269)
Q Consensus 145 --~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 77 ~~~~~G~iDiLVnnAG 92 (260)
T d1x1ta1 77 AVRQMGRIDILVNNAG 92 (260)
T ss_dssp HHHHHSCCSEEEECCC
T ss_pred HHHHhCCCcEEEeecc
Confidence 12367999998763
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.27 E-value=0.47 Score=34.72 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=29.9
Q ss_pred CCcEEEEcCc-ccH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 78 PGPIGILGFG-AGS-AARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 78 ~~~VL~iG~G-~G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
.++||.||+| .|. ++..|.+ .+.+|+++|.+++-++...+.+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~~~~a~~l~~~~~ 46 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRTLESAKKLSAGVQ 46 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESCHHHHHHHHTTCT
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECChHHHHHHHhccc
Confidence 4789999986 232 3333333 36799999999998877666553
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.06 E-value=1.5 Score=34.43 Aligned_cols=77 Identities=6% Similarity=-0.038 Sum_probs=52.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.+|+-|++.| +++.+++++ .+++|..++.+++-++.+.+.+.... ...++..+..|..+.
T Consensus 3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF----EPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS----CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 567778886544 455555443 48899999999988877666543210 135789999999874
Q ss_pred ccCCCeeEEEEcCCC
Q 035593 145 SLKDGFSGILVDLFS 159 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~ 159 (269)
..-++.|+++.++..
T Consensus 78 ~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 78 DHFGRLDILVNNAGV 92 (254)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCcCeecccccc
Confidence 123689999977543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=86.99 E-value=2.4 Score=33.20 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=46.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++.| +++.+++.+ .+++|..++.+++..+.+++. ...++..|..+.
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~------------~~~~~~~Dv~~~~~v~~~~~~~ 70 (248)
T d2d1ya1 4 AGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEAI------------GGAFFQVDLEDERERVRFVEEA 70 (248)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH------------TCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc------------CCeEEEEeCCCHHHHHHHHHHH
Confidence 5678888886654 444444433 478999999999887776543 135667888764
Q ss_pred -ccCCCeeEEEEcC
Q 035593 145 -SLKDGFSGILVDL 157 (269)
Q Consensus 145 -~~~~~yD~I~~d~ 157 (269)
..-++.|+++.++
T Consensus 71 ~~~~G~iDiLVnnA 84 (248)
T d2d1ya1 71 AYALGRVDVLVNNA 84 (248)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHhcCCCCeEEEeC
Confidence 1236789998765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.61 E-value=1.3 Score=35.36 Aligned_cols=78 Identities=9% Similarity=0.031 Sum_probs=51.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|+++| +++.+++.+ .+++|..++.+++-++.+.+.+.... ....++..+..|..+.
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---VPAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcceEEEEeeCCCHHHHHHHHHHH
Confidence 4567788887655 444444332 47899999999988877766542110 0124799999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 79 ~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 79 LAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCceEEEeecc
Confidence 12357899998753
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=86.57 E-value=0.33 Score=39.38 Aligned_cols=72 Identities=10% Similarity=-0.027 Sum_probs=44.4
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEE-CChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------ccCCC
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWE-LDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------SLKDG 149 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vE-idp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~~~~~ 149 (269)
.+||+.| |+|.++.++.+.. .+.+|+++| +++.-.....+... ..++++++.+|..+. ....+
T Consensus 1 ~KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~-------~~~~~~~i~~Di~~~~~l~~~~~~~~ 72 (338)
T d1orra_ 1 AKLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-------SLGNFEFVHGDIRNKNDVTRLITKYM 72 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-------TTCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh-------ccCCcEEEEcccCCHHHHHHHHHhcC
Confidence 3788887 5688877666543 377999998 33222111111111 135799999999874 13346
Q ss_pred eeEEEEcCC
Q 035593 150 FSGILVDLF 158 (269)
Q Consensus 150 yD~I~~d~~ 158 (269)
+|.|+.-+.
T Consensus 73 ~d~Vih~aa 81 (338)
T d1orra_ 73 PDSCFHLAG 81 (338)
T ss_dssp CSEEEECCC
T ss_pred CceEEeecc
Confidence 899997543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.39 E-value=2.2 Score=33.60 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=51.0
Q ss_pred CCCcEEEEcCcccH---HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGAGS---AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~---~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..+.+|+-|++.|. +++.+++ .+++|..++.+++-++.+.+.+.... .+.++..+..|..+.
T Consensus 3 ~gK~alITGas~GIG~aia~~la~--~Ga~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~~~Dvt~~~~v~~~~~~ 76 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAA--EGAKLSLVDVSSEGLEASKAAVLETA----PDAEVLTTVADVSDEAQVEAYVTA 76 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHC----TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhhC----CCCeEEEEeccCCCHHHHHHHHHH
Confidence 45678888876553 3344444 47899999999998877665542111 135788899998764
Q ss_pred --ccCCCeeEEEEcC
Q 035593 145 --SLKDGFSGILVDL 157 (269)
Q Consensus 145 --~~~~~yD~I~~d~ 157 (269)
..-++.|+++.++
T Consensus 77 ~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 77 TTERFGRIDGFFNNA 91 (258)
T ss_dssp HHHHHSCCSEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 1236799999875
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.26 E-value=1.9 Score=28.70 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=41.0
Q ss_pred CCCCCCCCcEEEEcCc-ccHH--HHHHHHHCCCceEEEEECChH-HHHHHHHhcCccccccCCCCcEEEEEccccccccC
Q 035593 72 LPPILPPGPIGILGFG-AGSA--ARLILDLYPEAVIHGWELDPS-VIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK 147 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G-~G~~--~~~l~~~~p~~~v~~vEidp~-~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~ 147 (269)
+|.+...++|..||.| +|.. |+.|.+ .+.+|++.|..+. .++..++ . .+.+..+...+. -
T Consensus 2 ~~~~~~~~~ihfiGigG~GMs~LA~~L~~--~G~~VsGSD~~~~~~~~~L~~-~-----------Gi~v~~g~~~~~--i 65 (96)
T d1p3da1 2 IPEMRRVQQIHFIGIGGAGMSGIAEILLN--EGYQISGSDIADGVVTQRLAQ-A-----------GAKIYIGHAEEH--I 65 (96)
T ss_dssp CCCCTTCCEEEEETTTSTTHHHHHHHHHH--HTCEEEEEESCCSHHHHHHHH-T-----------TCEEEESCCGGG--G
T ss_pred CccchhCCEEEEEEECHHHHHHHHHHHHh--CCCEEEEEeCCCChhhhHHHH-C-----------CCeEEECCcccc--C
Confidence 4566778999999864 5544 455555 4889999998532 2222222 1 245555544332 2
Q ss_pred CCeeEEEEc
Q 035593 148 DGFSGILVD 156 (269)
Q Consensus 148 ~~yD~I~~d 156 (269)
...|+|+..
T Consensus 66 ~~~d~vV~S 74 (96)
T d1p3da1 66 EGASVVVVS 74 (96)
T ss_dssp TTCSEEEEC
T ss_pred CCCCEEEEC
Confidence 457888763
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.14 E-value=0.44 Score=36.30 Aligned_cols=104 Identities=9% Similarity=0.079 Sum_probs=62.5
Q ss_pred CcEEEEcCccc--HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--ccc---ccCCC------------CcEEEEEc
Q 035593 79 GPIGILGFGAG--SAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKL---EKSYP------------DRLFVYVG 139 (269)
Q Consensus 79 ~~VL~iG~G~G--~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~---~~~~~------------~rv~~~~~ 139 (269)
++|.+||+|.= .++..++. .+.+|+.+|+|++.++.+++.... ... ..... .++....
T Consensus 5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~- 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST- 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-
T ss_pred EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-
Confidence 58999999832 33333333 588999999999999888765421 000 00000 1222221
Q ss_pred cccccccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 140 NALKASLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 140 D~~~~~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|.. ..-...|+|+=..+ ..+ .-.++|+++.+.++++-+|+.|..+-
T Consensus 82 d~~--~a~~~ad~ViEav~------E~l~~K~~v~~~l~~~~~~~~ilasnTS~l 128 (192)
T d1f0ya2 82 DAA--SVVHSTDLVVEAIV------ENLKVKNELFKRLDKFAAEHTIFASNTSSL 128 (192)
T ss_dssp CHH--HHTTSCSEEEECCC------SCHHHHHHHHHHHTTTSCTTCEEEECCSSS
T ss_pred hhH--hhhcccceehhhcc------cchhHHHHHHHHHhhhcccCceeeccCccc
Confidence 111 11345788874332 211 13589999999999999999988654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.13 E-value=0.67 Score=37.92 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEEC----ChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----cc
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWEL----DPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SL 146 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEi----dp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~ 146 (269)
.+++||+.| |+|.++.++.++. .+.+|.++|. +...++..+....... .++++++.+|..+. ..
T Consensus 15 ~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~d~~~~~~~ 88 (341)
T d1sb8a_ 15 QPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQ-----WSNFKFIQGDIRNLDDCNNA 88 (341)
T ss_dssp SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHH-----HTTEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcc-----cCCeeEEeeccccccccccc
Confidence 477899996 6888888777654 3679999985 3333444444332221 35799999999876 23
Q ss_pred CCCeeEEEEcC
Q 035593 147 KDGFSGILVDL 157 (269)
Q Consensus 147 ~~~yD~I~~d~ 157 (269)
....|.|+..+
T Consensus 89 ~~~~~~v~~~~ 99 (341)
T d1sb8a_ 89 CAGVDYVLHQA 99 (341)
T ss_dssp HTTCSEEEECC
T ss_pred ccccccccccc
Confidence 45566666543
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=86.13 E-value=0.62 Score=36.17 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=47.2
Q ss_pred CCcEEEEcCcccHHHHH--HHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARL--ILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~--l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+-+|-.||||.-..... ..+..++.+|+ ++|.+++..+.+.+.++.+. ..+.. ..|..+.......|+|+
T Consensus 33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~------~~~~~-~~d~~ell~~~~iD~V~ 105 (221)
T d1h6da1 33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDP------RKIYD-YSNFDKIAKDPKIDAVY 105 (221)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCG------GGEEC-SSSGGGGGGCTTCCEEE
T ss_pred CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccc------ccccc-cCchhhhcccccceeee
Confidence 45899999984432222 22334677877 56999999888877776542 22222 35555554556789998
Q ss_pred EcCC
Q 035593 155 VDLF 158 (269)
Q Consensus 155 ~d~~ 158 (269)
+...
T Consensus 106 I~tp 109 (221)
T d1h6da1 106 IILP 109 (221)
T ss_dssp ECSC
T ss_pred eccc
Confidence 7543
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=85.94 E-value=2.2 Score=29.34 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=50.7
Q ss_pred ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhc
Q 035593 102 AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL 180 (269)
Q Consensus 102 ~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L 180 (269)
.+|..||=|+.+.+..++.+... ..+. ...++.+. ...++||+|++|..-+ ...-.++++.+++.=
T Consensus 3 ~kILiVDDd~~~~~~l~~~L~~~-------g~v~-~~~~~~~al~~~~~~dlillD~~mP-----~~~G~~~~~~lr~~~ 69 (120)
T d1p2fa2 3 WKIAVVDDDKNILKKVSEKLQQL-------GRVK-TFLTGEDFLNDEEAFHVVVLDVMLP-----DYSGYEICRMIKETR 69 (120)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTT-------EEEE-EESSHHHHHHCCSCCSEEEEESBCS-----SSBHHHHHHHHHHHC
T ss_pred CEEEEEECCHHHHHHHHHHHHhC-------CEEE-EECCHHHHHhcCCCCCEEEEeCccc-----ccchhHHHHHHhhcC
Confidence 37899999999999999887532 1233 44567666 5556899999997543 233468888887654
Q ss_pred cCCcEEEEEe
Q 035593 181 RKGGRIMVNV 190 (269)
Q Consensus 181 ~pgG~l~~~~ 190 (269)
..--++++..
T Consensus 70 ~~~~ii~it~ 79 (120)
T d1p2fa2 70 PETWVILLTL 79 (120)
T ss_dssp TTSEEEEEES
T ss_pred CCCcEEEEec
Confidence 3333444443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=85.87 E-value=3.5 Score=30.11 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=56.1
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|-.||+|. ..+++.|++ .+.+|.+.|.+++-.+...+...... ..+..... .+...+ ......+.|+..
T Consensus 3 kIGvIGlG~MG~~ma~~L~~--~G~~V~~~dr~~~~~~~l~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAE--KGFKVAVFNRTYSKSEEFMKANASAP----FAGNLKAF-ETMEAFAASLKKPRKALIL 75 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHTTTST----TGGGEEEC-SCHHHHHHHBCSSCEEEEC
T ss_pred EEEEEeehHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHcCCccc----cccchhhh-hhhhHHHHhcccceEEEEe
Confidence 688999983 566666766 47899999999998877665543211 01222321 222222 223344444432
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.... ......+..+...++++.++ ++...
T Consensus 76 ~~~~------~~~~~~~~~~~~~~~~~~ii-i~~st 104 (178)
T d1pgja2 76 VQAG------AATDSTIEQLKKVFEKGDIL-VDTGN 104 (178)
T ss_dssp CCCS------HHHHHHHHHHHHHCCTTCEE-EECCC
T ss_pred ecCc------chhhhhhhhhhhhcccccee-cccCc
Confidence 2211 11346677888889887665 45543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=85.54 E-value=2.8 Score=32.85 Aligned_cols=73 Identities=3% Similarity=-0.204 Sum_probs=49.5
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------c
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----------S 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----------~ 145 (269)
+.+|+-|++ +.+++.+++++ .+++|..++.+++-++...+.+... ..++..+..|..+. .
T Consensus 3 KValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~------g~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (257)
T d2rhca1 3 EVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA------GVEADGRTCDVRSVPEIEALVAAVVE 75 (257)
T ss_dssp CEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 344666755 44455544433 4789999999998887776655321 35789999998864 1
Q ss_pred cCCCeeEEEEcCC
Q 035593 146 LKDGFSGILVDLF 158 (269)
Q Consensus 146 ~~~~yD~I~~d~~ 158 (269)
.-++.|+++.++-
T Consensus 76 ~~g~iDilVnnAG 88 (257)
T d2rhca1 76 RYGPVDVLVNNAG 88 (257)
T ss_dssp HTCSCSEEEECCC
T ss_pred HhCCCCEEEeccc
Confidence 3468899997753
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=85.38 E-value=0.86 Score=33.27 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=54.6
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|-.||+| +..+++.|++ .+.+|++.|++++.++..++... +. ..+..+ ..+..|+|++.+
T Consensus 2 kIgiIGlG~MG~~~A~~L~~--~G~~V~~~d~~~~~~~~~~~~~~------------~~-~~~~~e--~~~~~d~ii~~v 64 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRNPEAIADVIAAGA------------ET-ASTAKA--IAEQCDVIITML 64 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHTTC------------EE-CSSHHH--HHHHCSEEEECC
T ss_pred EEEEEehhHHHHHHHHHHHH--CCCeEEEEeCCcchhHHHHHhhh------------hh-cccHHH--HHhCCCeEEEEc
Confidence 58889998 4455566665 47799999999998887766432 11 112222 234579999866
Q ss_pred CCCCCCCCCCCcHHHH---HHHHhhccCCcEEEEEecCC
Q 035593 158 FSKGSLLSELEDPNTW---EKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~---~~~~~~L~pgG~l~~~~~~~ 193 (269)
.++.. ..+.+ ..+...+++ |.+++++...
T Consensus 65 ~~~~~------v~~v~~~~~~~~~~~~~-g~iiid~sT~ 96 (161)
T d1vpda2 65 PNSPH------VKEVALGENGIIEGAKP-GTVLIDMSSI 96 (161)
T ss_dssp SSHHH------HHHHHHSTTCHHHHCCT-TCEEEECSCC
T ss_pred CCHHH------HHHHHhCCcchhhccCC-CCEEEECCCC
Confidence 54311 22333 345667777 4556666554
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=85.13 E-value=0.61 Score=38.22 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=44.9
Q ss_pred cEEEEcCcccHHHHHHHHHC--CCceEEEEEC----ChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------ccC
Q 035593 80 PIGILGFGAGSAARLILDLY--PEAVIHGWEL----DPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------SLK 147 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEi----dp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~~~ 147 (269)
+||++| |+|.++.++.+.. .+.+|+++|. ........++.. ..+++++.+|..+. ...
T Consensus 2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dl~d~~~l~~~~~~ 71 (338)
T d1udca_ 2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG---------GKHPTFVEGDIRNEALMTEILHD 71 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH---------TSCCEEEECCTTCHHHHHHHHHH
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc---------CCCCEEEEeecCCHHHHHHHHhc
Confidence 688888 5788887776643 3678999985 222323222221 35799999999876 134
Q ss_pred CCeeEEEEcC
Q 035593 148 DGFSGILVDL 157 (269)
Q Consensus 148 ~~yD~I~~d~ 157 (269)
.++|+|+.-+
T Consensus 72 ~~~d~ViHlA 81 (338)
T d1udca_ 72 HAIDTVIHFA 81 (338)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEECC
Confidence 5789998654
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=85.05 E-value=0.78 Score=35.88 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=45.8
Q ss_pred CCCcEEEEcCcc--cHHHH----HHHHHCCCceEEE-EECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCC
Q 035593 77 PPGPIGILGFGA--GSAAR----LILDLYPEAVIHG-WELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~--G~~~~----~l~~~~p~~~v~~-vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~ 149 (269)
++-+|..||||. |..+. .+.+..++.++++ +|.+++..+.+.+.++.+. ... ..|..+......
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~--------~~~-~~~~~~l~~~~~ 85 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKH--------ATG-FDSLESFAQYKD 85 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTT--------CEE-ESCHHHHHHCTT
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhccccc--------cee-ecchhhcccccc
Confidence 467999999996 33332 3444346788885 7999998887777665431 222 244444444567
Q ss_pred eeEEEEcC
Q 035593 150 FSGILVDL 157 (269)
Q Consensus 150 yD~I~~d~ 157 (269)
.|+|++..
T Consensus 86 iD~V~i~t 93 (237)
T d2nvwa1 86 IDMIVVSV 93 (237)
T ss_dssp CSEEEECS
T ss_pred cceeeccC
Confidence 88887653
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=85.03 E-value=3.1 Score=32.32 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=49.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.+|+-|++.| +++.+++++ .+++|..++.+++-++...+.++ .+...+..|..+.
T Consensus 4 gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (243)
T d1q7ba_ 4 GKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG---------ANGKGLMLNVTDPASIESVLEKIR 73 (243)
T ss_dssp TCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC---------CCCcEEEEEecCHHHhhhhhhhhh
Confidence 456666676544 455444433 47899999999998887776653 3577888898764
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++.
T Consensus 74 ~~~g~iDilVnnAg 87 (243)
T d1q7ba_ 74 AEFGEVDILVNNAG 87 (243)
T ss_dssp HHTCSCSEEEECCC
T ss_pred cccCCcceehhhhh
Confidence 13468999997753
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.35 E-value=1.7 Score=29.92 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=51.2
Q ss_pred CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHH
Q 035593 101 EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLR 177 (269)
Q Consensus 101 ~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~ 177 (269)
+.+|..||=|+.+.+..++.+...+ -.+. ...|+.+. ....+||+|++|..-+ .....++++.++
T Consensus 1 nirILiVdDd~~~~~~l~~~L~~~g------~~v~-~a~~~~~al~~l~~~~~dlillD~~mp-----~~~g~~~~~~lr 68 (122)
T d1kgsa2 1 NVRVLVVEDERDLADLITEALKKEM------FTVD-VCYDGEEGMYMALNEPFDVVILDIMLP-----VHDGWEILKSMR 68 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTT------CEEE-EESSHHHHHHHHHHSCCSEEEEESCCS-----SSCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCC------CEEE-EEcchHHHHHHHHhhCccccccccccc-----cchhHHHHHHHH
Confidence 4689999999999999988875221 2333 34666654 3457899999996533 334568888887
Q ss_pred hhccCCcEEEEEe
Q 035593 178 QCLRKGGRIMVNV 190 (269)
Q Consensus 178 ~~L~pgG~l~~~~ 190 (269)
+.-..--++++..
T Consensus 69 ~~~~~~piI~lt~ 81 (122)
T d1kgsa2 69 ESGVNTPVLMLTA 81 (122)
T ss_dssp HTTCCCCEEEEES
T ss_pred hcCCCCcEEEEcC
Confidence 6533323444433
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=84.30 E-value=0.42 Score=37.37 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=24.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECCh
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp 111 (269)
.|||++||+|.+.++.+..-...+.+|+.+|-++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3789999999665554443333578999999653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=84.17 E-value=0.54 Score=35.52 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=61.6
Q ss_pred CCcEEEEcCcccHH--HHHHHHHCCCceEEEEECChHHHHHHHHhcCc--ccc---ccCC-------CCcEEEEEccccc
Q 035593 78 PGPIGILGFGAGSA--ARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKL---EKSY-------PDRLFVYVGNALK 143 (269)
Q Consensus 78 ~~~VL~iG~G~G~~--~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~---~~~~-------~~rv~~~~~D~~~ 143 (269)
-++|.+||+|.=+. +..++. .+.+|+.+|+|++.++.+.++... ... .... -.++.. ..+.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-- 78 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSY-- 78 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSS--
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccc--
Confidence 46899999984333 333333 588999999999998887665320 000 0000 011221 1111
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-...|+|+-.... .+ ...+.|+++-+.++++-+|+.|..+-
T Consensus 79 -~~~~~adlViEav~E------~l~~K~~lf~~l~~~~~~~~IiaSnTS~l 122 (186)
T d1wdka3 79 -GDFGNVDLVVEAVVE------NPKVKQAVLAEVENHVREDAILASNTSTI 122 (186)
T ss_dssp -TTGGGCSEEEECCCS------CHHHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred -ccccccceeeeeecc------hHHHHHHHHHHHHhhcCCCeeEEeccccc
Confidence 122356888853322 11 13589999999999999999888654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=84.13 E-value=0.58 Score=39.34 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=35.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-------CCceEEEEECChHHHHHHHHhc
Q 035593 78 PGPIGILGFGAGSAARLILDLY-------PEAVIHGWELDPSVIKVAREFF 121 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-------p~~~v~~vEidp~~~~~a~~~~ 121 (269)
+.+|+++|+|.|.+++-+++.. ...++..||++|...+.-++.+
T Consensus 80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l 130 (365)
T d1zkda1 80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 130 (365)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence 4579999999999998776642 2457999999999887766655
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=84.06 E-value=0.33 Score=38.84 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.2
Q ss_pred CCCCCCCCcEEEEcCcccHHHHH--HHHHCCCceEEEEECCh
Q 035593 72 LPPILPPGPIGILGFGAGSAARL--ILDLYPEAVIHGWELDP 111 (269)
Q Consensus 72 ~~~l~~~~~VL~iG~G~G~~~~~--l~~~~p~~~v~~vEidp 111 (269)
++.-.+|++|++||+|.+.++.+ |++ .+.+|+.+|-++
T Consensus 24 ~~~~~~pkkV~IIGaG~aGLsaA~~L~~--~G~~V~vlE~~~ 63 (370)
T d2iida1 24 LKATSNPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASE 63 (370)
T ss_dssp SCCCSSCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred CCCCCCCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence 44445689999999997666544 333 377999999764
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.04 E-value=2 Score=33.75 Aligned_cols=74 Identities=12% Similarity=-0.086 Sum_probs=47.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEE-ECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGW-ELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~v-Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
.+.||+.|+++| ++.++++.+ .+++|... ..+++.++.+.+.+... ..++..+..|..+.
T Consensus 6 GK~alITGas~G-IG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~------g~~~~~~~~D~~~~~~v~~~~~~~ 78 (259)
T d1ja9a_ 6 GKVALTTGAGRG-IGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL------GAQGVAIQADISKPSEVVALFDKA 78 (259)
T ss_dssp TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc------CCCceEecCCCCCHHHHHHHHHHH
Confidence 577888886544 444444333 47788764 56777666666655321 35789999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...+..|+++.++-
T Consensus 79 ~~~~g~idilinnag 93 (259)
T d1ja9a_ 79 VSHFGGLDFVMSNSG 93 (259)
T ss_dssp HHHHSCEEEEECCCC
T ss_pred HHHcCCCcEEEeccc
Confidence 13457999997654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.95 E-value=0.64 Score=35.48 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=28.5
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
+|.+||+| +..++..+++ .+.+|+++|+|++.++.-.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~--~g~~V~g~D~n~~~i~~ln~ 41 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVSSTKIDLINQ 41 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHT
T ss_pred EEEEECCCHhHHHHHHHHHh--CCCcEEEEeCCHHHHHHhcc
Confidence 68899999 3444555554 46799999999998887654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.42 E-value=2.8 Score=33.04 Aligned_cols=106 Identities=8% Similarity=-0.079 Sum_probs=61.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECC-hHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELD-PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEid-p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..+.+|+-|+++| +++.+++.+ .+++|...+.+ ++.++...+.+... ..++.++..|..+.
T Consensus 17 ~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~------g~~~~~~~~D~~~~~~v~~~~~~ 89 (272)
T d1g0oa_ 17 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN------GSDAACVKANVGVVEDIVRMFEE 89 (272)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh------CCceeeEeCCCCCHHHHHHHHHH
Confidence 4677888887655 344433332 47899999987 44444444433211 35789999999874
Q ss_pred --ccCCCeeEEEEcCCCCCCCCCC-CCc--------------HHHHHHHHhhccCCcEEEEE
Q 035593 145 --SLKDGFSGILVDLFSKGSLLSE-LED--------------PNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~~~~~~~~-l~~--------------~e~~~~~~~~L~pgG~l~~~ 189 (269)
...++.|+++..+......+.. ... ..+.+.+...|+.+|..++.
T Consensus 90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 1235789998765433211111 111 13345556777777766544
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.22 E-value=1.1 Score=35.80 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=51.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|++.| +++.+++.+ .+++|..++.+++-++.+.+.+.... ....++..+..|..+.
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 4 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG---VSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCCCceEEEEccCCCHHHHHHHHHHH
Confidence 3567888886654 444444333 47899999999988877766542111 0135799999998764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 80 ~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCceEEEeCCc
Confidence 12367899998753
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=83.06 E-value=5.4 Score=30.93 Aligned_cols=72 Identities=17% Similarity=0.055 Sum_probs=45.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHH-HHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSV-IKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~-~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..+.+|+-|++.| +++.+++.+ .+++|..++.++.- .+...+.. ..++..+..|..+.
T Consensus 4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~---------g~~~~~~~~Dvs~~~~v~~~~~~ 73 (247)
T d2ew8a1 4 KDKLAVITGGANG-IGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL---------GRRVLTVKCDVSQPGDVEAFGKQ 73 (247)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT---------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHc---------CCcEEEEEeeCCCHHHHHHHHHH
Confidence 4567777776544 444444433 47899999998642 22222221 35789999998864
Q ss_pred --ccCCCeeEEEEcCC
Q 035593 145 --SLKDGFSGILVDLF 158 (269)
Q Consensus 145 --~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 74 ~~~~~G~iDilVnnAG 89 (247)
T d2ew8a1 74 VISTFGRCDILVNNAG 89 (247)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 12368999997754
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=82.85 E-value=0.59 Score=33.86 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=26.7
Q ss_pred CCcEEEEcCcccHH--HHHHHHHCCCceEEEEECCh
Q 035593 78 PGPIGILGFGAGSA--ARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 78 ~~~VL~iG~G~G~~--~~~l~~~~p~~~v~~vEidp 111 (269)
.+||++||+|...+ +..|++..++.+|+.+|.++
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 57999999996544 35666666788999999887
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=82.75 E-value=0.75 Score=38.06 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=40.2
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHH--HhcCccccccCCCCcEEEEEcccccc------ccCC
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAR--EFFALEKLEKSYPDRLFVYVGNALKA------SLKD 148 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~--~~~~~~~~~~~~~~rv~~~~~D~~~~------~~~~ 148 (269)
+.||+.| |+|.++.+|.+.. .+.+|++++..+.-....+ ..+... ....++++++.+|..+. ....
T Consensus 2 K~vLITG-atGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (357)
T d1db3a_ 2 KVALITG-VTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDP---HTCNPKFHLHYGDLSDTSNLTRILREV 77 (357)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECC------------------------CCEEECCCCSSCHHHHHHHHHHH
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhh---hhcCCCeEEEEeecCCHHHHHHHHhcc
Confidence 4567777 4577766655543 3679999998554322221 111100 01246899999999876 1234
Q ss_pred CeeEEEEcC
Q 035593 149 GFSGILVDL 157 (269)
Q Consensus 149 ~yD~I~~d~ 157 (269)
++|+|+.-+
T Consensus 78 ~~d~v~h~a 86 (357)
T d1db3a_ 78 QPDEVYNLG 86 (357)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEEee
Confidence 679998654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.62 E-value=4.4 Score=31.87 Aligned_cols=75 Identities=8% Similarity=-0.161 Sum_probs=51.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHC---CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY---PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~---p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
.++|..|=+|++.+++.+++.+ .+.+|..+..+++-.+.+.+.+... ..++.++..|..+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dvs~~~sv~~~~~~~ 75 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFHQLDIDDLQSIRALRDFL 75 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEEecCCHHHHHHHHHHH
Confidence 4678655445555555554432 3679999999999888877765321 35788999999875
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...++.|++|.++-
T Consensus 76 ~~~~g~iDiLVnNAG 90 (275)
T d1wmaa1 76 RKEYGGLDVLVNNAG 90 (275)
T ss_dssp HHHHSSEEEEEECCC
T ss_pred HHhcCCcEEEEEcCC
Confidence 12468999998763
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=82.57 E-value=0.5 Score=37.62 Aligned_cols=95 Identities=11% Similarity=-0.004 Sum_probs=49.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHH--HHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIK--VAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~--~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
..+||+.| |+|.++..+.++. .+.+|+++..++.... .++..-.+. +.+++++.+|..+. ..-..
T Consensus 3 k~KILVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~------~~~v~~v~~d~~d~~~~~~~~~~ 75 (312)
T d1qyda_ 3 KSRVLIVG-GTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK------QLGAKLIEASLDDHQRLVDALKQ 75 (312)
T ss_dssp CCCEEEES-TTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH------TTTCEEECCCSSCHHHHHHHHTT
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhc------cCCcEEEEeecccchhhhhhccC
Confidence 56899997 5666666555432 3678888876543211 111111111 35789999998765 22334
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhh
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQC 179 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~ 179 (269)
.+.++..+...............+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 105 (312)
T d1qyda_ 76 VDVVISALAGGVLSHHILEQLKLVEAIKEA 105 (312)
T ss_dssp CSEEEECCCCSSSSTTTTTHHHHHHHHHHS
T ss_pred cchhhhhhhhcccccchhhhhHHHHHHHHh
Confidence 556655433221112223334555555443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=82.42 E-value=2.8 Score=30.65 Aligned_cols=70 Identities=17% Similarity=0.069 Sum_probs=41.4
Q ss_pred CCCCcEEEEcCcccHHH-HHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAA-RLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~-~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
.+.++||+||+|+-+-+ .+.+.. -+.+|+.+..+++-.+...+.|.-. ..++....+- .....+|+|+
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~-~g~~i~I~nRt~~ka~~l~~~~~~~-------~~~~~~~~~~---~~~~~~dliI 84 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLS-LDCAVTITNRTVSRAEELAKLFAHT-------GSIQALSMDE---LEGHEFDLII 84 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHHTGGG-------SSEEECCSGG---GTTCCCSEEE
T ss_pred CCCCEEEEECCcHHHHHHHHHhcc-cceEEEeccchHHHHHHHHHHHhhc-------cccccccccc---ccccccceee
Confidence 35789999999855433 222232 3568999999988776655655321 1233322211 2345689888
Q ss_pred Ec
Q 035593 155 VD 156 (269)
Q Consensus 155 ~d 156 (269)
..
T Consensus 85 N~ 86 (170)
T d1nyta1 85 NA 86 (170)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.03 E-value=0.86 Score=34.05 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=49.9
Q ss_pred cEEEEcCccc--HHHHHHHHHCCCceEEEE--ECChHHHHHHHHhcCccccccCCCCcEEEEE-ccccccccCCCeeEEE
Q 035593 80 PIGILGFGAG--SAARLILDLYPEAVIHGW--ELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKASLKDGFSGIL 154 (269)
Q Consensus 80 ~VL~iG~G~G--~~~~~l~~~~p~~~v~~v--Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~~~~~~yD~I~ 154 (269)
+|.+||+|.- +++..|.+. +.+|+.. +.+++.++...+....+.... .-....+.. .|.. ..-...|+|+
T Consensus 2 kI~ViGaG~~GtalA~~la~~--g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~~ad~Ii 76 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRLGV-KLNGVEIFWPEQLE--KCLENAEVVL 76 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTTTB-CCCSEEEECGGGHH--HHHTTCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEEEecccHHHHHHHhhhhhhhhhcc-hhccccccccccHH--HHHhccchhh
Confidence 6889999843 344445543 4466665 557777665544321111000 011122211 1111 2235689999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRI 186 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l 186 (269)
+...+. ..++.++++...|++.-++
T Consensus 77 ~avps~-------~~~~~~~~l~~~l~~~~ii 101 (180)
T d1txga2 77 LGVSTD-------GVLPVMSRILPYLKDQYIV 101 (180)
T ss_dssp ECSCGG-------GHHHHHHHHTTTCCSCEEE
T ss_pred cccchh-------hhHHHHHhhccccccceec
Confidence 854322 2578899999999775433
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=81.95 E-value=1.9 Score=29.50 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=27.1
Q ss_pred CCcEEEEcCcc-cHHHHHHHHHCCCceEEEEEC--------ChHHHHHHHHhc
Q 035593 78 PGPIGILGFGA-GSAARLILDLYPEAVIHGWEL--------DPSVIKVAREFF 121 (269)
Q Consensus 78 ~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEi--------dp~~~~~a~~~~ 121 (269)
|++|+.||+|. |.-....++. .+.+|+.+|. |+++.+...+.+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l 72 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVING-LGAKTHLFEMFDAPLPSFDPMISETLVEVM 72 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSSSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCChhhHHHHHHhhc-cccEEEEEeecchhhhhcchhhHHHHHHHH
Confidence 78999999873 3222222222 3789999996 555555555554
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.57 E-value=2.2 Score=29.41 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=52.0
Q ss_pred ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE--Ecccccc---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHH
Q 035593 102 AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY--VGNALKA---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKL 176 (269)
Q Consensus 102 ~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~--~~D~~~~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~ 176 (269)
.+|..||=|+.+.+..++.+... +.++++ ..|+.+. ....+||+|++|..-+ ...-.++++.+
T Consensus 2 irILivDD~~~~~~~l~~~L~~~-------~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP-----~~dG~e~~~~i 69 (123)
T d1dz3a_ 2 IKVCIADDNRELVSLLDEYISSQ-------PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMP-----HLDGLAVLERI 69 (123)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTS-------TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-----SSCHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhC-------CCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCC-----CCCHHHHHHHH
Confidence 47899999999999999887422 234433 4566654 3456899999997533 34467899999
Q ss_pred HhhccCCc-EEEEEe
Q 035593 177 RQCLRKGG-RIMVNV 190 (269)
Q Consensus 177 ~~~L~pgG-~l~~~~ 190 (269)
++.....= ++++..
T Consensus 70 r~~~~~~~~ii~~t~ 84 (123)
T d1dz3a_ 70 RAGFEHQPNVIMLTA 84 (123)
T ss_dssp HHHCSSCCEEEEEEE
T ss_pred HhcCCCCCeEEEEEC
Confidence 87665432 334443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.18 E-value=1.1 Score=31.08 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=30.4
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECCh--------HHHHHHHHhcC
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDP--------SVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp--------~~~~~a~~~~~ 122 (269)
.|+++++||+| .|.-...++.. -+.+|+.+|..+ ++.+.+++++.
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~-lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~ 75 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSR-LGSKVTVVEFQPQIGASMDGEVAKATQKFLK 75 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSSSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHh-hCcceeEEEeccccchhhhhhhHHHHHHHHH
Confidence 47899999887 33333333333 388999999654 77777777663
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| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=81.16 E-value=1 Score=38.26 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=38.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC--CceEEEEECChHHHHHHHHhcC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP--EAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p--~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+...++|||+=.|..+..+++..+ ..+|.++|.+|...+..++++.
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~ 259 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 259 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 467899999999988877766555 3599999999999999887653
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| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=81.08 E-value=6.7 Score=29.99 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=43.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
+.+++|+-|++.| +++.+++.+ .+++|..++.+++.++.. ..+++..|..+. ..-++
T Consensus 3 kgK~~lVTGas~G-IG~aia~~l~~~Ga~V~~~~r~~~~l~~~---------------~~~~~~~Dv~~~~~~~~~~~g~ 66 (234)
T d1o5ia_ 3 RDKGVLVLAASRG-IGRAVADVLSQEGAEVTICARNEELLKRS---------------GHRYVVCDLRKDLDLLFEKVKE 66 (234)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHT---------------CSEEEECCTTTCHHHHHHHSCC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHhc---------------CCcEEEcchHHHHHHHHHHhCC
Confidence 4678899987655 444444433 478999999998765432 124455676553 34568
Q ss_pred eeEEEEcCC
Q 035593 150 FSGILVDLF 158 (269)
Q Consensus 150 yD~I~~d~~ 158 (269)
.|+++.++-
T Consensus 67 iD~lVnnAG 75 (234)
T d1o5ia_ 67 VDILVLNAG 75 (234)
T ss_dssp CSEEEECCC
T ss_pred CcEEEeccc
Confidence 999998763
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| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.96 E-value=4.4 Score=31.65 Aligned_cols=75 Identities=9% Similarity=-0.027 Sum_probs=51.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+-|++ +.+++.+++++ .+++|..++.+++-++.+.+.+... ..++..+..|..+.
T Consensus 10 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~------g~~~~~~~~Dvs~~~~~~~~~~~~ 82 (255)
T d1fmca_ 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46677777655 45555555443 4789999999998887776655321 35788999998864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 83 ~~~~g~iDilvnnAG 97 (255)
T d1fmca_ 83 ISKLGKVDILVNNAG 97 (255)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHcCCCCEeeeCCc
Confidence 12367999987653
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.95 E-value=3.2 Score=29.75 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=48.7
Q ss_pred cEEEEcCccc--HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGAG--SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~G--~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||||.= .++..|.+ .+.++++.+.+++-.+..++.++... . .|..+ .-+..|+|++..
T Consensus 2 kIg~IG~G~mG~al~~~l~~--~~~~i~v~~r~~~~~~~l~~~~g~~~-----------~-~~~~~--~~~~~dvIilav 65 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQ--TPHELIISGSSLERSKEIAEQLALPY-----------A-MSHQD--LIDQVDLVILGI 65 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTT--SSCEEEEECSSHHHHHHHHHHHTCCB-----------C-SSHHH--HHHTCSEEEECS
T ss_pred EEEEEeccHHHHHHHHHHHh--CCCeEEEEcChHHhHHhhccccceee-----------e-chhhh--hhhccceeeeec
Confidence 6888988732 23333333 35689999999887766555544321 0 12111 124689999754
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
. +..+..+.+.|+++-.+ +++.
T Consensus 66 k-----------p~~~~~vl~~l~~~~~i-is~~ 87 (152)
T d2ahra2 66 K-----------PQLFETVLKPLHFKQPI-ISMA 87 (152)
T ss_dssp C-----------GGGHHHHHTTSCCCSCE-EECC
T ss_pred c-----------hHhHHHHhhhcccceeE-eccc
Confidence 2 23456666778886554 4554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=80.84 E-value=6.4 Score=28.41 Aligned_cols=98 Identities=7% Similarity=0.008 Sum_probs=55.3
Q ss_pred CCCcEEEEcCcc-c-HHHHHHHHHCCCceEEEEECChHHHH-HHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 77 PPGPIGILGFGA-G-SAARLILDLYPEAVIHGWELDPSVIK-VAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~-G-~~~~~l~~~~p~~~v~~vEidp~~~~-~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
..++||.||.|. | .++..|..+ .-.+++.+-.+.+-.+ ++++ ++. +. .+..++ ..-..||+
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~-~~~-----------~~--~~~~~~~~~l~~~Di 87 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARD-LGG-----------EA--VRFDELVDHLARSDV 87 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHH-HTC-----------EE--CCGGGHHHHHHTCSE
T ss_pred ccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHh-hhc-----------cc--ccchhHHHHhccCCE
Confidence 578999999852 2 223334432 2237999999865544 4444 331 11 122233 23357999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccC-CcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRK-GGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p-gG~l~~~~~~~ 193 (269)
||....+ +..+.+.+.++...+.-+. ...+++.+..|
T Consensus 88 vi~atss----~~~ii~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 88 VVSATAA----PHPVIHVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp EEECCSS----SSCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred EEEecCC----CCccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence 9975432 2334567777766554443 45788887544
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| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=80.43 E-value=2.6 Score=30.77 Aligned_cols=47 Identities=6% Similarity=-0.032 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCcccHHH-HHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 76 LPPGPIGILGFGAGSAA-RLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~-~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
.+.++||.||+|+-+-+ .+.+....-.+|+.+..+++-.+...+.++
T Consensus 15 ~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~ 62 (167)
T d1npya1 15 NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG 62 (167)
T ss_dssp CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh
Confidence 35789999999855444 333333333489999999987666555554
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=80.33 E-value=0.8 Score=30.22 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=24.0
Q ss_pred CCCcEEEEcCc-ccHHH-HHHHHHCCCceEEEEECCh
Q 035593 77 PPGPIGILGFG-AGSAA-RLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~-~~l~~~~p~~~v~~vEidp 111 (269)
..++|+.+|.| +|..+ ++|.+ .+.+|++.|..+
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~ 38 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRM 38 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCc
Confidence 46789999998 66444 44444 488999999855
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| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=80.22 E-value=2.3 Score=35.10 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=46.6
Q ss_pred CcEEEEcCcccHHHHHHHHHC---CCceEEEEEC-------------ChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 79 GPIGILGFGAGSAARLILDLY---PEAVIHGWEL-------------DPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~---p~~~v~~vEi-------------dp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
.+||+.| |+|.++.+|.++. .+.+|+++|. .+.............. ...+.++.++.+|..
T Consensus 3 MKVLITG-~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Di~ 79 (383)
T d1gy8a_ 3 MRVLVCG-GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP--PWADRYAALEVGDVR 79 (383)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCC--TTTTCCCEEEESCTT
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccc--cccccceEEEECccc
Confidence 3799887 7888877666543 4779999983 1222222222211110 112467999999998
Q ss_pred cc-------ccCCCeeEEEEcCC
Q 035593 143 KA-------SLKDGFSGILVDLF 158 (269)
Q Consensus 143 ~~-------~~~~~yD~I~~d~~ 158 (269)
+. .....+|+|+.-+.
T Consensus 80 d~~~l~~~~~~~~~~d~ViH~Aa 102 (383)
T d1gy8a_ 80 NEDFLNGVFTRHGPIDAVVHMCA 102 (383)
T ss_dssp CHHHHHHHHHHSCCCCEEEECCC
T ss_pred CHHHhhhhhhccceeehhhcccc
Confidence 74 23457899997553
|